RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17405
(241 letters)
>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 130 bits (328), Expect = 2e-37
Identities = 83/184 (45%), Positives = 111/184 (60%), Gaps = 13/184 (7%)
Query: 49 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVA 108
Y + + FL AQ S LHSIGKSV+ R+LW L + R + P FKYVA
Sbjct: 5 YHRQEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVGRF-PKEHRIGIPEFKYVA 63
Query: 109 NIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCNS 168
N+HGDE VG EL+ +LI+YL+ +DG D +T LIN+T I I+PS+NPDG+ A K+ C
Sbjct: 64 NMHGDETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAVKKPDCY- 122
Query: 169 LASFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGN 228
+GR N N DLNRNFPD F+ ++ R+ ET+A++ ++K FVLS N
Sbjct: 123 --YSIGRENYNQYDLNRNFPDAFEYNNVSRQP---------ETVAVMKWLKTETFVLSAN 171
Query: 229 LHGK 232
LHG
Sbjct: 172 LHGG 175
>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces
vulgaris [TaxId: 2026]}
Length = 323
Score = 126 bits (318), Expect = 1e-35
Identities = 54/200 (27%), Positives = 84/200 (42%), Gaps = 18/200 (9%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
Y +++E+ + A P+ VK SIGKS + R+LWA++IS NV + N +P Y
Sbjct: 8 GYHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDEN--EPEVLYT 65
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSC- 166
A H E + E+ Y ++ N D R+T L+N +I+I+ ++NPDG
Sbjct: 66 ALHHAREHLTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDISSGSY 125
Query: 167 ---NSLASFVGRNNANGVDLNRNFPDQFDSSSERREQPLNV------KKLEPETLAMISF 217
++ G DLNRN+ ++ P + PET AM F
Sbjct: 126 KSWRKNRQPNSGSSYVGTDLNRNYGYKWGCCGGSSGSPSSETYRGRSAFSAPETAAMRDF 185
Query: 218 IKN------NPFVLSGNLHG 231
I + H
Sbjct: 186 INSRVVGGKQQIKTLITFHT 205
>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm
(Helicoverpa armigera) [TaxId: 29058]}
Length = 317
Score = 126 bits (317), Expect = 1e-35
Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 16/194 (8%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
S++E+ +L A++ P+ V + GKS + R + L+IS + KP+
Sbjct: 11 KIHSYEEVDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYLRISTTNFQDAS--KPVVMMQ 68
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSC- 166
+ +H E V Y I L+I D + LIN D I+P NPDGY G
Sbjct: 69 SLLHCREWVTLPATLYAIHKLVI----DVTESDLINNIDWIILPVANPDGYVHTFGGDRY 124
Query: 167 ---NSLASFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVK----KLEPETLAMISFIK 219
N ++ N GVDLNRNF + ++S EPE+ + I
Sbjct: 125 WRKNRATGYMAGNLCMGVDLNRNFGMNWGTASSSSVCSDTFHGRSAFSEPESSVIRDIIA 184
Query: 220 NN--PFVLSGNLHG 231
+ L ++H
Sbjct: 185 EHRNRMALYLDIHS 198
>d1m4la_ c.56.5.1 (A:) Carboxypeptidase A {Cow (Bos taurus) [TaxId:
9913]}
Length = 307
Score = 126 bits (316), Expect = 2e-35
Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 13/192 (6%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
Y + DE+ F+ ++P V IG+S + R ++ L+ S ++ +P
Sbjct: 11 TYHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFSTGGSN-----RPAIWID 65
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSC- 166
IH E + + + + G D T ++++ DIF+ NPDG++ +
Sbjct: 66 LGIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAFTHSQNRL 125
Query: 167 -NSLASFVGRNNANGVDLNRNFPDQFD-----SSSERREQPLNVKKLEPETLAMISFIKN 220
S + GVD NRN+ F SS E E +++ F+K+
Sbjct: 126 WRKTRSVTSSSLCVGVDANRNWDAGFGKAGASSSPCSETYHGKYANSEVEVKSIVDFVKD 185
Query: 221 N-PFVLSGNLHG 231
+ F ++H
Sbjct: 186 HGNFKAFLSIHS 197
>d1h8la2 c.56.5.1 (A:4-304) Carboxypeptidase D, catalytic domain
{Crested duck (Lophonetta specularioides) [TaxId: 8836]}
Length = 301
Score = 122 bits (306), Expect = 4e-34
Identities = 85/183 (46%), Positives = 116/183 (63%), Gaps = 13/183 (7%)
Query: 49 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVA 108
+ F ++ FL A + PS +L+S+GKSV+ R+L+ ++IS N +P FKY+
Sbjct: 10 HHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDN-PGIHEAGEPEFKYIG 68
Query: 109 NIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCNS 168
N+HG+EVVG EL+ LIEYL N GTD VT L+ +T I I+PS+NPDGY ++EG
Sbjct: 69 NMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGDRG- 127
Query: 169 LASFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGN 228
VGRNN+N DLNRNFPDQF ++ + ETLA++S++K PFVLS N
Sbjct: 128 --GTVGRNNSNNYDLNRNFPDQFFQVTDPPQP---------ETLAVMSWLKTYPFVLSAN 176
Query: 229 LHG 231
LHG
Sbjct: 177 LHG 179
>d2bo9a1 c.56.5.1 (A:4-307) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 305
Score = 122 bits (306), Expect = 4e-34
Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 12/192 (6%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
Y S + + + A P + IG S +NR ++ L+ S +G+ + +P
Sbjct: 8 AYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFS----TGKGVRRPAVWLN 63
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSC- 166
A IH E + + ++ + D +T ++ DIF++P NPDGY + +
Sbjct: 64 AGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQNRL 123
Query: 167 -NSLASFVGRNNANGVDLNRNFPDQFD-----SSSERREQPLNVKKLEPETLAMISFIKN 220
S ++ G D NRN+ F + E E +++ FI+
Sbjct: 124 WRKTRSRNPGSSCIGADPNRNWNASFAGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQK 183
Query: 221 NP-FVLSGNLHG 231
+ F +LH
Sbjct: 184 HGNFKGFIDLHS 195
>d1ayea1 c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 307
Score = 119 bits (300), Expect = 3e-33
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 14/192 (7%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
Y + +E+++ + ++P V +IG S +NR + L+ S KP
Sbjct: 10 AYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGD------KPAIWLD 63
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDG--YSAAKEGS 165
A IH E V + ++ + G D +T +++ DIF++P NPDG +S K
Sbjct: 64 AGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTKNRM 123
Query: 166 CNSLASFVGRNNANGVDLNRNFPDQFDSSSER-----REQPLNVKKLEPETLAMISFIKN 220
S V + GVD NRN+ F E E +++ FIK+
Sbjct: 124 WRKTRSKVSGSLCVGVDPNRNWDAGFGGPGASSNPCSDSYHGPSANSEVEVKSIVDFIKS 183
Query: 221 NP-FVLSGNLHG 231
+ LH
Sbjct: 184 HGKVKAFIILHS 195
>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm
(Helicoverpa zea) [TaxId: 7113]}
Length = 312
Score = 119 bits (298), Expect = 9e-33
Identities = 36/196 (18%), Positives = 69/196 (35%), Gaps = 18/196 (9%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
+Y + + ++L ++ P + + +S + R + ++IS N KP+
Sbjct: 5 NYQELEVIDEYLDYIGEKYPDVATVVNAAESFEGRPIKYIKISTTNFEDEN--KPVIFID 62
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSC- 166
IH E + + + I L+ + L+ D ++P +NPDGY
Sbjct: 63 GGIHAREWISPPSVTWAIHKLVED----VTENDLLEKFDWILLPVVNPDGYKYTFTNERF 118
Query: 167 ----NSLASFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKK-----LEPETLAMISF 217
S + G D NRNF ++S ++ E ET +
Sbjct: 119 WRKTRSTNNNPLSQICRGADGNRNFDFVWNSIGTSNSPCSDIYAGTSAFSEVETRVVRDI 178
Query: 218 IKNNP--FVLSGNLHG 231
+ + L +H
Sbjct: 179 LHEHLARMALYLTMHS 194
>d1z5ra1 c.56.5.1 (A:6-308) Carboxypeptidase B {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 304
Score = 109 bits (273), Expect = 3e-29
Identities = 37/193 (19%), Positives = 73/193 (37%), Gaps = 14/193 (7%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
Y +++ + + +NP + +IG + +++ L++ + + KP
Sbjct: 6 KYNNWETIEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPN-----KPAIFMD 60
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDG--YSAAKEGS 165
H E + + + + ++ G + +T +N D +++P LN DG Y+ K
Sbjct: 61 CGFHAREWISHAFCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGYIYTWTKNRM 120
Query: 166 CNSLASFVGRNNANGVDLNRNFPDQFD-----SSSERREQPLNVKKLEPETLAMISFIKN 220
S G D NRNF + + + + E ET A+ FI+N
Sbjct: 121 WRKTRSTNAGTTCIGTDPNRNFDAGWCTTGASTDPCDETYCGSAAESEKETKALADFIRN 180
Query: 221 NP--FVLSGNLHG 231
N +H
Sbjct: 181 NLSSIKAYLTIHS 193
>d1yw6a1 c.56.5.7 (A:1-322) Succinylglutamate desuccinylase AstE
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 43.5 bits (102), Expect = 8e-06
Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 31/177 (17%)
Query: 55 LTKFLVAA-AQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGD 113
+ FL + P + G + L+++ L+ A IHG+
Sbjct: 1 MDNFLALTLTGKKPVITEREINGVRWRWLGDGVLELTPLTPPQGALV-----ISAGIHGN 55
Query: 114 EVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCNSLASFV 173
E E+++ L+ + + I ++ NP K
Sbjct: 56 ETAPVEMLDALLGAISHGE---------IPLRWRLLVILGNPPALKQGKRY--------- 97
Query: 174 GRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLH 230
D+NR F ++ +E E ++LE K + +LH
Sbjct: 98 -----CHSDMNRMFGGRWQLFAESGETCR-ARELEQCLEDFYDQGKESVRWH-LDLH 147
>d1yw4a1 c.56.5.7 (A:2-332) Succinylglutamate desuccinylase AstE
{Chromobacterium violaceum [TaxId: 536]}
Length = 331
Score = 38.5 bits (89), Expect = 4e-04
Identities = 17/145 (11%), Positives = 40/145 (27%), Gaps = 31/145 (21%)
Query: 86 ALQISRNVASGRNLLKPMFKYVANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTT 145
++++ + ++L +HG+E E+++ ++ + +
Sbjct: 35 CVELNGDARGADSVL-----LSCGVHGNETAPIEVVDGMLTDIAAGQ---------LALN 80
Query: 146 DIFIIPSLNPDGYSAAKEGSCNSLASFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVK 205
++ N D + D+NR F E E
Sbjct: 81 CRLLVMFANLDAIRQGV--------RYGNY------DMNRLFNGAHARHPELPESVR-AA 125
Query: 206 KLEPETLAMISFIKNNPFVLSGNLH 230
+LE + + LH
Sbjct: 126 ELETLAAEFFAGARARKLHYD--LH 148
>d2g9da1 c.56.5.7 (A:3-342) Succinylglutamate desuccinylase AstE
{Vibrio cholerae [TaxId: 666]}
Length = 340
Score = 38.5 bits (89), Expect = 4e-04
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 23/92 (25%)
Query: 107 VANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSC 166
IHGDE EL++ I+ ++ + + +P
Sbjct: 57 SCGIHGDETAPMELLDKWIDDIVSG---------FQPVAERCLFIMAHPQATVRHVR--- 104
Query: 167 NSLASFVGRNNANGVDLNRNFPDQFDSSSERR 198
+LNR F D+ + S
Sbjct: 105 -----------FIEQNLNRLFDDKPHTPSTEL 125
>d2bcoa1 c.56.5.7 (A:4-342) Succinylglutamate desuccinylase AstE
{Vibrio parahaemolyticus [TaxId: 670]}
Length = 339
Score = 35.4 bits (81), Expect = 0.005
Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 28/108 (25%)
Query: 92 NVASGRNLLKPMFKYVANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIP 151
+N++ IHGDE EL++ +I+ + +
Sbjct: 46 PTQETKNII-----ISCGIHGDETAPMELVDSIIKDIESGF---------QKVDARCLFI 91
Query: 152 SLNPDGYSAAKEGSCNSLASFVGRNNANGVDLNRNFPDQFDSSSERRE 199
+P+ A +LNR F ++ ++
Sbjct: 92 IAHPESTLAHTRF--------------LEENLNRLFDEKEHEPTKELA 125
>d2gu2a1 c.56.5.7 (A:4-310) Aspartoacylase AspA {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 307
Score = 31.1 bits (70), Expect = 0.097
Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 24/95 (25%)
Query: 107 VANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSC 166
HG+E+ G L+ + ++ + NP
Sbjct: 13 FGGTHGNELTGVFLVTHWLKNGA----------EVHRAGLEVKPFITNPRAVEKCTR--- 59
Query: 167 NSLASFVGRNNANGVDLNRNFPDQFDSSSERREQP 201
DLNR F + S + P
Sbjct: 60 -----------YIDCDLNRVFDLENLSKEMSEDLP 83
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA
polymerases {Escherichia coli [TaxId: 562]}
Length = 388
Score = 28.1 bits (62), Expect = 0.95
Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 41 EPFLENPHYLSFDELTKF---LVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGR 97
+ ++S D T L + + ++ +G + ++ VAS
Sbjct: 143 PDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASSLDFEL-EYVASRP 201
Query: 98 NLLKPMFKYVANIHGDEVVGYELMNYLIEYLI 129
LL+ + + AN D ++G+ ++ + + L
Sbjct: 202 QLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQ 233
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A
MoaA {Staphylococcus aureus [TaxId: 1280]}
Length = 327
Score = 26.7 bits (57), Expect = 2.8
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 12 TFG---TYIAISL---CFLLCWVGCTTPVLVNNDPEPFLENPHYLSFDELTKFLVAAAQQ 65
G + +S+ C C C P V D FL L+FDE+ + A+
Sbjct: 6 KLGRPIRDLRLSVTDRCNFRCDY-CM-PKEVFGDDFVFLPKNELLTFDEMARIAKVYAEL 63
Query: 66 NPSKV 70
K+
Sbjct: 64 GVKKI 68
>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 25.4 bits (54), Expect = 6.4
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 7 VLGTGTFGTYIAISLC 22
+LG G G+ +++ L
Sbjct: 5 ILGAGAMGSALSVPLV 20
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 24.9 bits (53), Expect = 8.1
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 71 KLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGD 113
KLHS+ ++V+ RD++ L + A G +L + + + +
Sbjct: 6 KLHSLCEAVKTRDIFGLL--QAYADGVDLTEKIPLANGHEPDE 46
>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 189
Score = 24.8 bits (53), Expect = 8.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 7 VLGTGTFGTYIAISLC 22
V G+G FGT +A+ L
Sbjct: 12 VFGSGAFGTALAMVLS 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.408
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 891,370
Number of extensions: 40316
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 22
Length of query: 241
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,268,006
Effective search space: 200344948
Effective search space used: 200344948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)