BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17408
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 3/84 (3%)
Query: 12 LPYEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIK 71
L EG+C SL +VGR NA +DLNR+FPD+ + S + L + +PET A++++I
Sbjct: 150 LSQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQ---LRAQSRQPETAALVNWIV 206
Query: 72 NNPFVLSGNLHGGAIVASYPFDDS 95
+ PFVLS N HGGA+VASYP+D+S
Sbjct: 207 SKPFVLSANFHGGAVVASYPYDNS 230
>pdb|1QMU|A Chain A, Duck Carboxypeptidase D Domain Ii
pdb|1H8L|A Chain A, Duck Carboxypeptidase D Domain Ii In Complex With Gemsa
Length = 380
Score = 82.0 bits (201), Expect = 8e-17, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 51/72 (70%), Gaps = 9/72 (12%)
Query: 25 VGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGG 84
VGRNN+N DLNRNFPDQF ++ +PETLA++S++K PFVLS NLHGG
Sbjct: 130 VGRNNSNNYDLNRNFPDQFFQVTD---------PPQPETLAVMSWLKTYPFVLSANLHGG 180
Query: 85 AIVASYPFDDSK 96
++V +YPFDD +
Sbjct: 181 SLVVNYPFDDDE 192
>pdb|2NSM|A Chain A, Crystal Structure Of The Human Carboxypeptidase N
(kininase I) Catalytic Domain
Length = 439
Score = 78.2 bits (191), Expect = 1e-15, Method: Composition-based stats.
Identities = 43/87 (49%), Positives = 55/87 (63%), Gaps = 10/87 (11%)
Query: 19 NSLARFVGRNNANGVDLNRNFPD---------QFDSSSERREQPLNVK-KLEPETLAMIS 68
N VGRNNANGVDLNRNFPD ++ + P N K ++EPET A+I
Sbjct: 124 NKPGYLVGRNNANGVDLNRNFPDLNTYIYYNEKYGGPNHHLPLPDNWKSQVEPETRAVIR 183
Query: 69 FIKNNPFVLSGNLHGGAIVASYPFDDS 95
++ + FVLS NLHGGA+VA+YP+D S
Sbjct: 184 WMHSFNFVLSANLHGGAVVANYPYDKS 210
>pdb|1UWY|A Chain A, Crystal Structure Of Human Carboxypeptidase M
Length = 426
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 9/70 (12%)
Query: 25 VGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGG 84
+GR N N DLNRNFPD F+ ++ R+ PET+A++ ++K FVLS NLHGG
Sbjct: 125 IGRENYNQYDLNRNFPDAFEYNNVSRQ---------PETVAVMKWLKTETFVLSANLHGG 175
Query: 85 AIVASYPFDD 94
A+VASYPFD+
Sbjct: 176 ALVASYPFDN 185
>pdb|4AXV|A Chain A, Biochemical And Structural Characterization Of The Mpaa
Amidase As Part Of A Conserved Scavenging Pathway For
Peptidoglycan Derived Peptides In Gamma-Proteobacteria
Length = 243
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 13/58 (22%)
Query: 27 RNNANGVDLNRNFPDQ--------FDSSSERREQPLNVK-----KLEPETLAMISFIK 71
R NAN VDLNR FP Q + SS + + VK +LEPE A+IS I+
Sbjct: 95 RANANQVDLNRAFPTQNWTEHGTVYRWSSHTPVRDVKVKTGDKEQLEPEVDALISLIE 152
>pdb|3D66|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D66|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D66|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D67|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
pdb|3D67|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
pdb|3D67|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
Length = 424
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 24 FVGRNNANGVDLNRNFP-----DQFDSSSERREQPLNV-KKLEPETLAMISFIKNN 73
F N+ G DLNRNF ++ SSS E + + EPE A+ SF++ N
Sbjct: 245 FYANNHCIGTDLNRNFASKHWCEEGASSSSCSETYCGLYPESEPEVKAVASFLRRN 300
>pdb|3LMS|A Chain A, Structure Of Human Activated Thrombin-Activatable
Fibrinolys Inhibitor, Tafia, In Complex With
Tick-Derived Funnelin Inh Tci
Length = 309
Score = 28.9 bits (63), Expect = 0.73, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 24 FVGRNNANGVDLNRNFP-----DQFDSSSERREQPLNV-KKLEPETLAMISFIKNN 73
F N+ G DLNRNF ++ SSS E + + EPE A+ SF++ N
Sbjct: 130 FYANNHCIGTDLNRNFASKHWCEEGASSSSCSETYCGLYPESEPEVKAVASFLRRN 185
>pdb|3D68|A Chain A, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
pdb|3D68|B Chain B, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
pdb|3D68|C Chain C, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
Length = 424
Score = 28.9 bits (63), Expect = 0.73, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 24 FVGRNNANGVDLNRNFP-----DQFDSSSERREQPLNV-KKLEPETLAMISFIKNN 73
F N+ G DLNRNF ++ SSS E + + EPE A+ SF++ N
Sbjct: 245 FYANNHCIGTDLNRNFASKHWCEEGASSSSCSETYCGLYPESEPEVKAVASFLRRN 300
>pdb|2I2X|B Chain B, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|D Chain D, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|F Chain F, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|H Chain H, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|J Chain J, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|L Chain L, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|N Chain N, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|P Chain P, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
Length = 258
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 19 NSLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLS 78
N + + N N VDL R+ P + ++ ++E+P+ + T M +F + N +L
Sbjct: 141 NIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLE 200
Query: 79 GNLH------GGAI 86
+ GGA+
Sbjct: 201 NGIKIPFACGGGAV 214
>pdb|3E0J|A Chain A, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
pdb|3E0J|C Chain C, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
pdb|3E0J|E Chain E, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
pdb|3E0J|G Chain G, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
Length = 476
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 13 PYEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEP---ETLAMISF 69
PY+ + + + RF+G + N D+ R + E E L V+ + P +TL F
Sbjct: 338 PYQATIDGV-RFLGTSGQNVSDIFRY--SSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 394
Query: 70 IKNNPFVL 77
K +PF+
Sbjct: 395 YKTDPFIF 402
>pdb|2V17|L Chain L, Structure Of The Complex Of Antibody Mn423 With A
Fragment Of Tau Protein
pdb|3L1O|L Chain L, Crystal Structure Of Monoclonal Antibody Mn423 Fab
Fragment With Free Combining Site, Crystallized In The
Presence Of Zinc
Length = 214
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 31 NGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLS 78
+G L P +F S + L + +LEPE AM ++N + L+
Sbjct: 50 SGSTLQSGTPSRFSGSGSGTDFTLTISRLEPEDFAMYYCQQHNDYPLT 97
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of
Zebrafish Tlr5
Length = 407
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 29 NANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPF 75
+ N VDL+ N + + +S R Q L K+E +T ++ I+NN F
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV--IRNNTF 75
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of
Zebrafish Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of
Zebrafish Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 29 NANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPF 75
+ N VDL+ N + + +S R Q L K+E +T ++ I+NN F
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV--IRNNTF 75
>pdb|1RHH|A Chain A, Crystal Structure Of The Broadly Hiv-1 Neutralizing Fab
X5 At 1.90 Angstrom Resolution
pdb|1RHH|C Chain C, Crystal Structure Of The Broadly Hiv-1 Neutralizing Fab
X5 At 1.90 Angstrom Resolution
pdb|2B4C|L Chain L, Crystal Structure Of Hiv-1 Jr-fl Gp120 Core Protein
Containing The Third Variable Region (v3) Complexed
With Cd4 And The X5 Antibody
Length = 215
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 38 NFPDQFDSSSERREQPLNVKKLEPETLAM 66
PD+F S + L + +LEPE LA+
Sbjct: 58 GIPDRFSGSGSGTDFTLTIGRLEPEDLAV 86
>pdb|1IT9|L Chain L, Crystal Structure Of An Antigen-Binding Fragment From A
Humanized Version Of The Anti-Human Fas Antibody Hfe7a
Length = 214
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 34 DLNRNFPDQFDSSSERREQPLNVKKLEPETLAM 66
+L PD+F S + L + +LEPE A+
Sbjct: 57 NLESGIPDRFSGSGSGTDFTLTISRLEPEDFAV 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,135,107
Number of Sequences: 62578
Number of extensions: 110814
Number of successful extensions: 320
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 21
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)