Query psy17408
Match_columns 96
No_of_seqs 116 out of 1028
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 21:44:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03869 M14_CPX_like Peptidase 99.9 5.8E-28 1.3E-32 191.4 8.2 93 4-96 108-218 (405)
2 cd06246 M14_CPB2 Peptidase M14 99.9 1.5E-27 3.4E-32 182.3 9.3 89 4-95 104-204 (300)
3 cd03870 M14_CPA Peptidase M14 99.9 2.3E-27 4.9E-32 181.6 8.3 89 4-95 104-203 (301)
4 cd03872 M14_CPA6 Carboxypeptid 99.9 5.7E-27 1.2E-31 179.5 8.9 89 4-95 101-201 (300)
5 KOG2650|consensus 99.9 7.9E-27 1.7E-31 185.5 9.2 90 4-96 220-323 (418)
6 cd06247 M14_CPO Peptidase M14 99.9 2.2E-26 4.8E-31 176.1 9.7 90 4-96 103-204 (298)
7 cd03864 M14_CPN Peptidase M14 99.9 9.7E-27 2.1E-31 183.6 7.4 93 4-96 104-206 (392)
8 cd06227 Peptidase_M14-like_2 A 99.9 2.6E-26 5.7E-31 173.8 9.2 86 4-95 107-195 (272)
9 cd03871 M14_CPB Peptidase M14 99.9 3.3E-26 7.1E-31 175.2 8.3 89 4-95 104-204 (300)
10 cd06228 Peptidase_M14-like_3 A 99.9 2.8E-26 6.1E-31 178.0 7.8 89 4-95 90-202 (332)
11 cd03867 M14_CPZ Peptidase M14- 99.9 3.2E-26 7E-31 180.4 7.6 91 4-95 104-207 (395)
12 cd06248 M14_CPA_CPB_like Pepti 99.9 4.7E-26 1E-30 174.2 7.3 89 4-95 105-207 (304)
13 cd06226 M14_CPT_like Peptidase 99.9 1.1E-25 2.3E-30 172.0 9.1 88 4-95 93-211 (293)
14 cd03868 M14_CPD_I The first ca 99.9 1.1E-25 2.5E-30 175.6 7.8 85 4-95 103-187 (372)
15 cd03859 M14_CPT Peptidase M14- 99.9 2.9E-25 6.2E-30 168.7 8.9 91 4-95 105-210 (295)
16 cd03863 M14_CPD_II The second 99.9 1.5E-25 3.2E-30 176.0 7.3 80 4-95 108-187 (375)
17 cd06245 M14_CPD_III The third 99.9 5.7E-25 1.2E-29 172.0 7.8 80 4-95 104-183 (363)
18 cd03865 M14_CPE_H Peptidase M1 99.9 4.5E-25 9.7E-30 174.8 7.0 93 4-96 108-214 (402)
19 smart00631 Zn_pept Zn_pept. 99.9 3.9E-24 8.5E-29 160.7 9.3 89 4-95 100-194 (277)
20 cd03858 M14_CP_N-E_like Carbox 99.9 1.9E-24 4E-29 168.3 7.6 85 4-95 104-188 (374)
21 cd06229 M14_Endopeptidase_I Pe 99.9 3.6E-24 7.9E-29 159.7 8.6 91 4-94 72-182 (255)
22 cd03860 M14_CP_A-B_like The Pe 99.9 6.8E-24 1.5E-28 160.9 8.0 89 4-95 98-198 (294)
23 cd03866 M14_CPM Peptidase M14 99.9 4.8E-24 1E-28 167.3 6.9 79 4-95 107-185 (376)
24 cd06905 Peptidase_M14-like_8 A 99.9 1.6E-23 3.4E-28 164.0 9.2 64 31-95 208-272 (360)
25 PF00246 Peptidase_M14: Zinc c 99.9 1.5E-22 3.3E-27 150.8 4.4 88 5-95 97-189 (279)
26 cd03862 Peptidase_M14-like_7 A 99.9 1.1E-21 2.3E-26 148.9 7.8 75 21-95 80-173 (273)
27 KOG2649|consensus 99.8 1.9E-21 4.2E-26 156.2 5.5 89 5-96 172-270 (500)
28 cd06904 M14_MpaA_like Peptidas 99.7 4.7E-18 1E-22 121.2 6.8 68 25-92 49-118 (178)
29 cd00596 Peptidase_M14_like The 99.7 1.4E-16 3.1E-21 113.1 7.3 61 25-95 56-116 (196)
30 PRK10602 murein peptide amidas 99.7 8.4E-17 1.8E-21 120.2 6.1 61 24-84 86-159 (237)
31 cd06237 M14_Nna1_like_3 A bact 99.6 4.4E-16 9.6E-21 116.4 6.6 63 5-94 100-167 (244)
32 cd06908 M14_AGBL4_like Peptida 99.6 3E-15 6.6E-20 113.1 6.7 58 25-95 101-165 (261)
33 cd06234 M14_Nna1_like_1 A bact 99.6 2.1E-15 4.5E-20 114.1 5.8 54 25-94 114-167 (263)
34 cd03856 M14_Nna1_like Peptidas 99.5 1.3E-13 2.8E-18 104.4 6.2 55 26-93 112-174 (269)
35 cd06238 Peptidase_M14-like_1_1 99.4 5.7E-13 1.2E-17 101.2 6.4 54 22-91 130-186 (271)
36 cd06235 M14_Nna1_like_2 Subgro 99.4 1.5E-12 3.3E-17 97.8 6.4 58 25-95 103-165 (258)
37 cd06239 Peptidase_M14-like_1_2 99.3 2.3E-12 5E-17 96.0 5.3 51 25-93 91-141 (231)
38 cd06244 Peptidase_M14-like_1_7 99.3 6.4E-12 1.4E-16 95.6 6.3 51 25-91 126-177 (268)
39 cd06243 Peptidase_M14-like_1_6 99.2 2.7E-11 6E-16 90.4 5.9 45 24-84 86-130 (236)
40 cd06241 Peptidase_M14-like_1_4 99.2 3.8E-11 8.2E-16 90.8 4.7 55 24-95 117-171 (266)
41 cd06236 M14_AGBL5_like Peptida 99.2 5.7E-11 1.2E-15 91.7 5.7 58 25-95 126-188 (304)
42 cd03857 Peptidase_M14-like_1 P 99.1 7.8E-11 1.7E-15 86.8 5.9 51 24-90 87-139 (226)
43 cd06231 Peptidase_M14-like_4 A 99.0 6.5E-10 1.4E-14 82.9 6.4 47 24-85 92-140 (236)
44 cd06907 M14_AGBL2-3_like Pepti 99.0 9.2E-10 2E-14 83.6 5.9 58 25-95 104-166 (261)
45 cd06242 Peptidase_M14-like_1_5 99.0 7.4E-10 1.6E-14 83.9 5.1 48 24-87 109-156 (268)
46 cd06906 M14_Nna1 Peptidase M14 98.5 3.6E-07 7.8E-12 70.1 6.2 50 25-87 110-164 (278)
47 cd06233 Peptidase_M14-like_6 P 97.5 0.00018 3.9E-09 55.4 4.8 20 22-41 101-120 (283)
48 cd06240 Peptidase_M14-like_1_3 97.4 0.00029 6.3E-09 53.9 5.3 43 27-85 137-179 (273)
49 PF10994 DUF2817: Protein of u 97.4 0.00039 8.4E-09 54.7 6.1 34 51-86 183-220 (341)
50 cd06254 M14_ASTE_ASPA_like_4 A 96.9 0.0013 2.9E-08 49.8 4.2 49 29-92 73-125 (288)
51 cd06251 M14_ASTE_ASPA_like_1 A 96.7 0.0017 3.7E-08 49.3 3.5 49 24-86 69-119 (287)
52 cd06250 M14_PaAOTO_like An unc 96.6 0.0049 1.1E-07 48.5 5.2 27 66-92 149-177 (359)
53 cd06230 M14_ASTE_ASPA_like The 96.5 0.0046 1E-07 45.9 4.6 50 24-86 48-97 (252)
54 cd06255 M14_ASTE_ASPA_like_5 A 96.0 0.016 3.5E-07 44.2 5.1 52 24-87 73-125 (293)
55 cd06252 M14_ASTE_ASPA_like_2 A 95.4 0.026 5.5E-07 43.5 4.5 48 24-86 83-134 (316)
56 cd06232 Peptidase_M14-like_5 P 95.3 0.03 6.5E-07 42.4 4.2 26 61-86 120-145 (240)
57 TIGR02994 ectoine_eutE ectoine 95.2 0.049 1.1E-06 42.4 5.3 49 24-87 96-148 (325)
58 PF04952 AstE_AspA: Succinylgl 94.9 0.016 3.5E-07 43.3 1.9 58 24-87 51-112 (292)
59 cd06253 M14_ASTE_ASPA_like_3 A 94.8 0.063 1.4E-06 41.1 5.0 48 24-86 74-124 (298)
60 cd06909 M14_ASPA Aspartoacylas 93.1 0.31 6.6E-06 37.4 5.9 47 32-84 55-104 (282)
61 PRK02259 aspartoacylase; Provi 92.9 0.33 7.3E-06 37.0 5.7 44 33-85 58-107 (288)
62 COG2866 Predicted carboxypepti 92.8 0.069 1.5E-06 42.5 1.9 16 26-41 207-222 (374)
63 cd06910 M14_ASTE_ASPA_like_7 A 92.7 0.26 5.6E-06 37.2 4.9 50 32-92 60-110 (272)
64 cd06256 M14_ASTE_ASPA_like_6 A 92.6 0.24 5.1E-06 38.7 4.7 49 24-84 82-130 (327)
65 KOG3641|consensus 92.4 0.15 3.1E-06 43.2 3.3 51 26-89 488-544 (650)
66 cd03855 M14_ASTE Peptidase M14 90.7 0.66 1.4E-05 36.0 5.3 52 33-93 99-164 (322)
67 COG3608 Predicted deacylase [G 87.5 1 2.3E-05 35.6 4.4 51 24-89 97-151 (331)
68 PRK05324 succinylglutamate des 82.7 4.3 9.2E-05 31.7 5.7 54 25-91 98-166 (329)
69 PRK14341 lipoate-protein ligas 65.4 4.3 9.2E-05 30.2 1.7 14 78-91 74-87 (213)
70 TIGR03242 arg_catab_astE succi 63.3 17 0.00037 28.1 4.8 10 75-84 139-148 (319)
71 PRK14347 lipoate-protein ligas 63.1 5.1 0.00011 29.7 1.8 14 78-91 72-85 (209)
72 TIGR00214 lipB lipoate-protein 63.1 5.2 0.00011 29.1 1.8 14 78-91 54-67 (184)
73 PRK14342 lipoate-protein ligas 61.2 5.8 0.00013 29.5 1.8 14 78-91 74-87 (213)
74 PRK14348 lipoate-protein ligas 60.5 6 0.00013 29.6 1.7 14 78-91 83-96 (221)
75 PRK14345 lipoate-protein ligas 59.0 6.5 0.00014 29.6 1.7 14 78-91 80-93 (234)
76 PRK14344 lipoate-protein ligas 58.7 6.7 0.00015 29.4 1.7 14 78-91 92-105 (223)
77 PRK14343 lipoate-protein ligas 58.2 6.9 0.00015 29.6 1.7 14 78-91 84-97 (235)
78 PRK14346 lipoate-protein ligas 55.8 7.9 0.00017 29.2 1.7 14 78-91 71-84 (230)
79 PRK14349 lipoate-protein ligas 54.1 9.1 0.0002 28.7 1.8 14 78-91 69-82 (220)
80 PF01666 DX: DX module; Inter 49.9 9.5 0.00021 23.9 1.1 19 2-20 20-38 (76)
81 PF00034 Cytochrom_C: Cytochro 45.7 21 0.00045 20.6 2.1 17 57-73 74-90 (91)
82 COG0321 LipB Lipoate-protein l 40.6 20 0.00043 27.0 1.8 14 78-91 80-93 (221)
83 PF08914 Myb_DNA-bind_2: Rap1 30.9 41 0.0009 20.3 1.8 20 54-73 1-20 (65)
84 COG3931 Predicted N-formylglut 29.1 1.5E+02 0.0033 22.8 4.9 57 32-88 83-157 (263)
85 PF04299 FMN_bind_2: Putative 28.8 65 0.0014 22.8 2.8 33 56-88 5-37 (169)
86 PF01701 PSI_PsaJ: Photosystem 28.1 36 0.00077 18.7 1.0 10 33-42 27-36 (37)
87 PRK00753 psbL photosystem II r 26.2 29 0.00063 19.2 0.5 11 28-38 7-17 (39)
88 cd01211 GAPCenA GAPCenA Phosph 26.2 1.8E+02 0.0039 20.1 4.4 27 56-82 16-46 (125)
89 TIGR00197 yjeF_nterm yjeF N-te 25.7 1.3E+02 0.0029 21.6 4.0 33 52-84 124-157 (205)
90 PF02419 PsbL: PsbL protein; 25.6 26 0.00056 19.3 0.2 10 29-38 6-15 (37)
91 CHL00038 psbL photosystem II p 25.0 31 0.00068 19.0 0.4 11 28-38 6-16 (38)
92 PF13709 DUF4159: Domain of un 24.8 1.1E+02 0.0025 22.1 3.5 30 53-82 62-91 (207)
93 KOG0958|consensus 24.8 61 0.0013 28.3 2.3 26 69-94 250-276 (690)
94 PF04219 DUF413: Protein of un 24.1 1E+02 0.0022 20.1 2.8 12 36-47 5-16 (93)
95 PF09892 DUF2119: Uncharacteri 23.5 93 0.002 23.0 2.8 26 61-86 63-88 (193)
96 COG2988 Succinylglutamate desu 23.4 66 0.0014 25.5 2.1 55 33-93 100-163 (324)
97 COG0703 AroK Shikimate kinase 22.9 33 0.00073 24.7 0.4 25 53-77 52-76 (172)
98 KOG0640|consensus 22.7 1.8E+02 0.0038 23.7 4.4 38 56-93 199-236 (430)
99 PF06309 Torsin: Torsin; Inte 22.2 1.1E+02 0.0024 21.0 2.9 29 59-87 34-64 (127)
100 KOG0325|consensus 22.2 64 0.0014 24.4 1.8 14 78-91 86-99 (226)
101 PF14376 Haem_bd: Haem-binding 21.2 1.1E+02 0.0023 20.9 2.6 23 52-74 115-137 (137)
102 PF06925 MGDG_synth: Monogalac 20.8 1.1E+02 0.0024 20.8 2.7 22 63-84 78-99 (169)
103 PF13873 Myb_DNA-bind_5: Myb/S 20.4 50 0.0011 19.6 0.8 19 57-75 4-22 (78)
104 PRK11027 hypothetical protein; 20.4 1.3E+02 0.0028 20.3 2.8 12 36-47 14-25 (112)
105 PF03853 YjeF_N: YjeF-related 20.4 52 0.0011 22.8 0.9 32 54-85 111-143 (169)
No 1
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=99.95 E-value=5.8e-28 Score=191.36 Aligned_cols=93 Identities=31% Similarity=0.538 Sum_probs=83.3
Q ss_pred ccCCCCceeeecCCccCCCccCCCCCCCCcCCCCCCCC----CCCCCC-------------C-CCCCCCCCCCCcHHHHH
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRNNANGVDLNRNFPD----QFDSSS-------------E-RREQPLNVKKLEPETLA 65 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~N~~GVDLNRNFp~----~w~~~~-------------~-~~~y~G~~p~SEpEt~A 65 (96)
-.|||+++.+.+++++..+|+++|+||+|||||||||+ .|+..+ . ++.|.|+.|+|||||+|
T Consensus 108 ~~NPDG~e~s~~~~~~~~~Wrk~R~na~GVDLNRNFp~~~~~~W~~~~~~~~~~~~~~~~~Pc~~~Y~G~~~~sEPET~A 187 (405)
T cd03869 108 SMNPDGYEKAYEAGSELGGWALGRWTEEGIDINHNFPDLNTILWEAEDKKKVPRKVPNHHIPIPEWYLSENATVAPETRA 187 (405)
T ss_pred eeCCchhhhhhhcCccccccccCccCCCCccccCCCcccccccccccccccccccccccCCCCccccCCCCCCCcHHHHH
Confidence 36899999999988888899999999999999999996 676321 1 36899999999999999
Q ss_pred HHHHHHhCCceEEEEeccCCceEEeeCCCCC
Q psy17408 66 MISFIKNNPFVLSGNLHGGAIVASYPFDDSK 96 (96)
Q Consensus 66 v~~~~~~~~~~l~is~Hsg~~~i~yPy~~s~ 96 (96)
|++|+++++|+|++++|+|..+++||||+++
T Consensus 188 v~~~i~~~~FvLSanlHgG~lv~~YPyd~~~ 218 (405)
T cd03869 188 VIAWMEKIPFVLGANLQGGELVVSYPYDMTR 218 (405)
T ss_pred HHHHHHhCCceEEEEecCccEEEEcCccccc
Confidence 9999999999999999999999999999863
No 2
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=99.95 E-value=1.5e-27 Score=182.35 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=78.5
Q ss_pred ccCCCCceeeecCCccCCCccCCCC-----CCCCcCCCCCCCCCCCCCCC-----CCCCCCCCCCCcHHHHHHHHHHHhC
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRN-----NANGVDLNRNFPDQFDSSSE-----RREQPLNVKKLEPETLAMISFIKNN 73 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~-----N~~GVDLNRNFp~~w~~~~~-----~~~y~G~~p~SEpEt~Av~~~~~~~ 73 (96)
..|+|+++.+.+++ .+|+++|. ||+|||||||||.+|+..+. ++.|+|+.|+|||||+||++|++++
T Consensus 104 ~~NPDG~~~~~~~~---r~wRknr~~~~~~~~~GVDLNRNf~~~w~~~g~s~~p~~~~y~G~~p~SEpEt~av~~~~~~~ 180 (300)
T cd06246 104 VMNVDGYDYTWKKN---RMWRKNRSFYANSHCIGTDLNRNFDAKWCCEGASSSSCSETYCGPYPESEPEVKAVASFLRRH 180 (300)
T ss_pred eecCCceeEEEecc---ceeecCCCCCCCCCccCcccccccccccCCCCCCCCCCCCCcCCCCCCccHHHHHHHHHHHhC
Confidence 46899999998874 56899985 68999999999999975432 3799999999999999999999987
Q ss_pred C--ceEEEEeccCCceEEeeCCCC
Q psy17408 74 P--FVLSGNLHGGAIVASYPFDDS 95 (96)
Q Consensus 74 ~--~~l~is~Hsg~~~i~yPy~~s 95 (96)
+ +.++|++||++++|+|||+++
T Consensus 181 ~~~i~~~is~Hs~g~~i~~P~~~~ 204 (300)
T cd06246 181 INQIKAYISMHSYSQMILFPYSYT 204 (300)
T ss_pred CcceeEEEEeccCCcEEEeccccC
Confidence 4 788999999999999999986
No 3
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=99.94 E-value=2.3e-27 Score=181.60 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=77.7
Q ss_pred ccCCCCceeeecCCccCCCccCCCC-----CCCCcCCCCCCCCCCCCCC----C-CCCCCCCCCCCcHHHHHHHHHHHhC
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRN-----NANGVDLNRNFPDQFDSSS----E-RREQPLNVKKLEPETLAMISFIKNN 73 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~-----N~~GVDLNRNFp~~w~~~~----~-~~~y~G~~p~SEpEt~Av~~~~~~~ 73 (96)
..|+|+++...+.+ ..|+++|. ||.|||||||||.+|+..+ . ++.|+|+.|+|||||+||++|+.++
T Consensus 104 ~~NPDG~~~s~~~~---r~wrknr~~~~~~~~~GVDLNRNf~~~w~~~g~s~~p~~~~Y~G~~pfSEpEt~av~~~~~~~ 180 (301)
T cd03870 104 VTNPDGYVFTHSQN---RLWRKTRSVTSGSLCVGVDPNRNWDAGFGGAGASSNPCSETYHGPYANSEVEVKSIVDFVKSH 180 (301)
T ss_pred eecCchhhheeccc---ceeecCCCCCCCCCccccccccCCCcccCcCCCCCCCCccccCCCCCCccHHHHHHHHHHhhC
Confidence 36899998887654 46898886 7899999999999998543 2 3789999999999999999999987
Q ss_pred -CceEEEEeccCCceEEeeCCCC
Q psy17408 74 -PFVLSGNLHGGAIVASYPFDDS 95 (96)
Q Consensus 74 -~~~l~is~Hsg~~~i~yPy~~s 95 (96)
++.++|++||++++|+|||+++
T Consensus 181 ~~~~~~l~lHS~g~~i~yP~~~~ 203 (301)
T cd03870 181 GNFKAFISIHSYSQLLLYPYGYT 203 (301)
T ss_pred CCeEEEEEeccCCceEEecCcCC
Confidence 6999999999999999999986
No 4
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=99.94 E-value=5.7e-27 Score=179.55 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=78.2
Q ss_pred ccCCCCceeeecCCccCCCccCCCC-----CCCCcCCCCCCCCCCCCCCC-----CCCCCCCCCCCcHHHHHHHHHHHhC
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRN-----NANGVDLNRNFPDQFDSSSE-----RREQPLNVKKLEPETLAMISFIKNN 73 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~-----N~~GVDLNRNFp~~w~~~~~-----~~~y~G~~p~SEpEt~Av~~~~~~~ 73 (96)
..|+|+++...+++ ..|+++|. ||.|||||||||.+|+..+. ++.|+|+.|+|||||+||++|+.++
T Consensus 101 ~vNPDGy~ys~~~~---r~wrknR~~~~~~~c~GVDLNRNf~~~w~~~g~s~~Pcs~~Y~G~~pfSEpEt~al~~~~~~~ 177 (300)
T cd03872 101 VFNVDGYHYSWTND---RFWRKTRSKNSRYQCRGVDANRNWKVKWCDEGASLHPCDDTYCGPFPESEPEVKAVAQFLRKH 177 (300)
T ss_pred eecCCcceeeeccc---hhhhccCCCCCCCCccccccccccCcccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhC
Confidence 46899999998876 46888875 48999999999999976532 3799999999999999999999986
Q ss_pred --CceEEEEeccCCceEEeeCCCC
Q psy17408 74 --PFVLSGNLHGGAIVASYPFDDS 95 (96)
Q Consensus 74 --~~~l~is~Hsg~~~i~yPy~~s 95 (96)
++.++|++||++++|+|||+++
T Consensus 178 ~~~i~~~ls~Hsyg~~i~~P~g~~ 201 (300)
T cd03872 178 RKHVRAYLSFHAYAQMLLYPYSYK 201 (300)
T ss_pred CccceEEEEEccCCcEEEecCCCc
Confidence 5899999999999999999986
No 5
>KOG2650|consensus
Probab=99.94 E-value=7.9e-27 Score=185.46 Aligned_cols=90 Identities=22% Similarity=0.188 Sum_probs=78.4
Q ss_pred ccCCCCceeeecCCccCCCccCCCC--C----CCCcCCCCCCCCCCCC-CCC----C-CCCCCCCCCCcHHHHHHHHHHH
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRN--N----ANGVDLNRNFPDQFDS-SSE----R-REQPLNVKKLEPETLAMISFIK 71 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~--N----~~GVDLNRNFp~~w~~-~~~----~-~~y~G~~p~SEpEt~Av~~~~~ 71 (96)
.-|||+++-....+ .+|+++|. . |.||||||||+++|+. .+. | +.|+|+.|||||||+||.+||.
T Consensus 220 v~NPDGYeYS~t~~---R~WRKnRs~~~~~~~C~GvDlNRNfd~~W~~~~Gas~~PCse~Y~G~~pfSEpEt~av~~fi~ 296 (418)
T KOG2650|consen 220 VVNPDGYEYSRTTD---RLWRKNRSPNGCASRCIGVDLNRNFDFHWGGGKGASSDPCSETYAGPSPFSEPETRAVRDFIT 296 (418)
T ss_pred eecCCcceeeeccc---ccccccCCCCCCCCeeeCCCCCCCccCcCCCCCCCCCCCCccccCCCCCCCcHHHHHHHHHHH
Confidence 35899999888875 56999995 2 6899999999999987 332 3 7999999999999999999999
Q ss_pred hC--CceEEEEeccCCceEEeeCCCCC
Q psy17408 72 NN--PFVLSGNLHGGAIVASYPFDDSK 96 (96)
Q Consensus 72 ~~--~~~l~is~Hsg~~~i~yPy~~s~ 96 (96)
+. ++.++|+||||+|+|+|||+|+.
T Consensus 297 ~~~~~i~~yislHSYsQ~llyPyg~~~ 323 (418)
T KOG2650|consen 297 SFENNIKAYISLHSYSQLLLYPYGYTN 323 (418)
T ss_pred hcCcceEEEEEecccceeEEecccccC
Confidence 85 48999999999999999999873
No 6
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=99.94 E-value=2.2e-26 Score=176.12 Aligned_cols=90 Identities=22% Similarity=0.221 Sum_probs=78.0
Q ss_pred ccCCCCceeeecCCccCCCccCCCC-----CCCCcCCCCCCCCCCCCCCC-----CCCCCCCCCCCcHHHHHHHHHHHhC
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRN-----NANGVDLNRNFPDQFDSSSE-----RREQPLNVKKLEPETLAMISFIKNN 73 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~-----N~~GVDLNRNFp~~w~~~~~-----~~~y~G~~p~SEpEt~Av~~~~~~~ 73 (96)
..|+|+++...+.+ ..|+++|. +|.||||||||+.+|+..+. ++.|+|+.|+|||||+||++|+++.
T Consensus 103 ~~NPDGy~ys~~~~---r~wRknr~~~~~~~c~GVDLNRNf~~~w~~~g~s~~p~~~~y~G~~pfSEpEt~ai~~~~~~~ 179 (298)
T cd06247 103 VLNIDGYIYTWTTD---RLWRKNRSPHNNGTCYGVDLNRNFNSQWCSIGASRNCRSNIFCGTGPESEPETKAVARLIESK 179 (298)
T ss_pred eecCCcceEEeccc---ceecccCCCCCCCCccccccccCCCCccccCCCCCCCCCCCcCCCCCCCcHHHHHHHHHHHhc
Confidence 36899999987765 56899885 67899999999999986432 3799999999999999999999997
Q ss_pred C--ceEEEEeccCCceEEeeCCCCC
Q psy17408 74 P--FVLSGNLHGGAIVASYPFDDSK 96 (96)
Q Consensus 74 ~--~~l~is~Hsg~~~i~yPy~~s~ 96 (96)
+ ++++|++||+|++|+|||+++.
T Consensus 180 ~~~i~~~l~~Hsyg~~i~~P~g~~~ 204 (298)
T cd06247 180 KSDILCYLTIHSYGQLILLPYGYTK 204 (298)
T ss_pred CcceEEEEEeccCCCeEEeCCcCCC
Confidence 5 6779999999999999999863
No 7
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=99.93 E-value=9.7e-27 Score=183.61 Aligned_cols=93 Identities=44% Similarity=0.613 Sum_probs=77.1
Q ss_pred ccCCCCceeeecCCccCCCccCCCCCCCCcCCCCCCCCCCCCC-------CC--C-CCCCCCCCCCcHHHHHHHHHHHhC
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRNNANGVDLNRNFPDQFDSS-------SE--R-REQPLNVKKLEPETLAMISFIKNN 73 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~N~~GVDLNRNFp~~w~~~-------~~--~-~~y~G~~p~SEpEt~Av~~~~~~~ 73 (96)
-.|||+++++.++++...+|..+|.|++|||||||||+.|... +. + ..+....+++||||+||++|++++
T Consensus 104 ~~NPDG~e~~~~~~~~~~~~~~~R~Na~GVDLNRNFp~~~~~~~~~~~~~g~~~~~P~~~~~~~~~epET~Av~~~~~~~ 183 (392)
T cd03864 104 SMNPDGYEVAARQGPEFNGYLVGRNNANGVDLNRNFPDLNTLMYYNEKYGGPNHHLPLPDNWKSQVEPETLAVIQWMQNY 183 (392)
T ss_pred eeCCchHHhhhccCCCcCccccccccccCcccccCCCcccccchhhhccCCccccCCCccccccccCHHHHHHHHHHHhc
Confidence 3689999999998888788899999999999999999875311 11 0 011122578999999999999999
Q ss_pred CceEEEEeccCCceEEeeCCCCC
Q psy17408 74 PFVLSGNLHGGAIVASYPFDDSK 96 (96)
Q Consensus 74 ~~~l~is~Hsg~~~i~yPy~~s~ 96 (96)
+|+|++++|||+++++||||+++
T Consensus 184 ~fvls~nlHgG~~v~~YPyd~~~ 206 (392)
T cd03864 184 NFVLSANLHGGAVVANYPYDKSR 206 (392)
T ss_pred CcEEEEEccCCceeeeCCccccc
Confidence 99999999999999999999874
No 8
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.93 E-value=2.6e-26 Score=173.78 Aligned_cols=86 Identities=22% Similarity=0.264 Sum_probs=77.6
Q ss_pred ccCCCCceeeecCCccCCCccCCCCCCCCcCCCCCCCCCCCCCCC---CCCCCCCCCCCcHHHHHHHHHHHhCCceEEEE
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSE---RREQPLNVKKLEPETLAMISFIKNNPFVLSGN 80 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~N~~GVDLNRNFp~~w~~~~~---~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is 80 (96)
..|||+++....++ +.+|.|++|||||||||..|+..+. ++.|+|+.|+|||||+||++|+++.+++++|+
T Consensus 107 ~~NPDG~~~~~~~~------~~wR~N~~GVDLNRNf~~~w~~~~~~~~~~~y~G~~~~sEpEt~av~~~~~~~~~~~~i~ 180 (272)
T cd06227 107 NENPDGRKKVESGN------YCLRENENGVDLNRNYGADWGFKEDDYEDEEYSGPAPFSEPETRVLRDLLTSFSPDVFLS 180 (272)
T ss_pred ccCCchheeEeccC------cccccCCccccccccCCcccccCCCCccccccCCCCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 35899999987765 5678899999999999999986543 47999999999999999999999999999999
Q ss_pred eccCCceEEeeCCCC
Q psy17408 81 LHGGAIVASYPFDDS 95 (96)
Q Consensus 81 ~Hsg~~~i~yPy~~s 95 (96)
+||++++++|||+++
T Consensus 181 ~Hs~~~~i~~P~~~~ 195 (272)
T cd06227 181 VHSGTLALFTPYAYK 195 (272)
T ss_pred eccCCCEEEecCCCC
Confidence 999999999999986
No 9
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=99.93 E-value=3.3e-26 Score=175.23 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=76.2
Q ss_pred ccCCCCceeeecCCccCCCccCCCC-----CCCCcCCCCCCCCCCCCCCC-----CCCCCCCCCCCcHHHHHHHHHHHhC
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRN-----NANGVDLNRNFPDQFDSSSE-----RREQPLNVKKLEPETLAMISFIKNN 73 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~-----N~~GVDLNRNFp~~w~~~~~-----~~~y~G~~p~SEpEt~Av~~~~~~~ 73 (96)
..|+|+++.+.+.+ ..|+++|. +|.|||||||||..|+..+. .+.|+|+.|+|||||+||++|+++.
T Consensus 104 ~~NPDG~~~s~~~~---r~wrknr~~~~~~~c~GVDLNRNf~~~w~~~g~s~~pc~~~Y~G~~p~SEpEt~Al~~~~~~~ 180 (300)
T cd03871 104 VLNIDGYIYTWTKN---RMWRKTRSTNAGSSCIGTDPNRNFNAGWCTVGASRNPCDETYCGSAPESEKETKALADFIRNN 180 (300)
T ss_pred eecCCcCeeeeccC---HHHHHhcCCCCCCCccccccCcCCCCccCCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHhc
Confidence 35899999988865 45888775 25899999999999975432 2789999999999999999999986
Q ss_pred --CceEEEEeccCCceEEeeCCCC
Q psy17408 74 --PFVLSGNLHGGAIVASYPFDDS 95 (96)
Q Consensus 74 --~~~l~is~Hsg~~~i~yPy~~s 95 (96)
.+.++|++||++++|+|||+++
T Consensus 181 ~~~~~~~l~~HSyg~~i~~Py~~~ 204 (300)
T cd03871 181 LSSIKAYLTIHSYSQMLLYPYSYT 204 (300)
T ss_pred CcceeEEEEeccCccEEEecCcCC
Confidence 4788999999999999999986
No 10
>cd06228 Peptidase_M14-like_3 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.93 E-value=2.8e-26 Score=177.98 Aligned_cols=89 Identities=20% Similarity=0.153 Sum_probs=77.7
Q ss_pred ccCCCCceeeecCCccCCCccCCCC--------CCCCcCCCCCCCCCCCCC----------C----C-CCCCCCCCCCCc
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRN--------NANGVDLNRNFPDQFDSS----------S----E-RREQPLNVKKLE 60 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~--------N~~GVDLNRNFp~~w~~~----------~----~-~~~y~G~~p~SE 60 (96)
..|+|+++...+.+ ..|+++|. +|.||||||||+.+|+.. + . ++.|+|+.||||
T Consensus 90 ~vNPDGy~~s~~~~---r~WRKNr~~~~~~~~~~c~GVDLNRNf~~~W~~~~~~~~~~~~~g~S~~Pcse~Y~G~~pfSE 166 (332)
T cd06228 90 LVNPDGRAHDQTAN---SCWRKNRNPASAGPNPSSVGVDINRNFDFLWDFQKYFDPGASRSVASTDPASETFHGTAAFSE 166 (332)
T ss_pred eecCcchhheeccc---hhhhccCCCCcccccCcccccccCCCCCCCcCcccccccccccCCCCCCCCccccCCCCCCcc
Confidence 46899999987754 56899886 789999999999999731 1 1 379999999999
Q ss_pred HHHHHHHHHHHhCC-ceEEEEeccCCceEEeeCCCC
Q psy17408 61 PETLAMISFIKNNP-FVLSGNLHGGAIVASYPFDDS 95 (96)
Q Consensus 61 pEt~Av~~~~~~~~-~~l~is~Hsg~~~i~yPy~~s 95 (96)
|||+||++++++.+ +.++|++||++++|+|||+++
T Consensus 167 PET~av~~~~~~~~~~~~yls~HSygq~il~P~g~~ 202 (332)
T cd06228 167 PETRNVVWVMDTFKNIRWFVDLHSYGGDVLYSWGDD 202 (332)
T ss_pred HHHHHHHHHHhccCCeEEEEEeccCCceEEecccCC
Confidence 99999999999986 999999999999999999986
No 11
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=99.93 E-value=3.2e-26 Score=180.38 Aligned_cols=91 Identities=36% Similarity=0.561 Sum_probs=75.6
Q ss_pred ccCCCCceeeecCCccCCCccCCCCCCCCcCCCCCCCCCCCCC-------CCCCCCCCC------CCCCcHHHHHHHHHH
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRNNANGVDLNRNFPDQFDSS-------SERREQPLN------VKKLEPETLAMISFI 70 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~N~~GVDLNRNFp~~w~~~-------~~~~~y~G~------~p~SEpEt~Av~~~~ 70 (96)
-.|+|+++.+.+.++...+|+++|.||+|||||||||+.|... +.+ ...+| .+.|||||+||++|+
T Consensus 104 ~~NPDG~e~~~~~~~~~~~wr~~R~n~~GvDLNRNf~~~~~~~~~~~~~~g~~-~~~~p~p~~~~~~~sepEt~Av~~~~ 182 (395)
T cd03867 104 SMNPDGYEAAASEGAGYNGWTNGRQNAQNIDLNRNFPDLTSEVYRRRRQRGAR-TDHIPIPDSYWFGKVAPETKAVMKWM 182 (395)
T ss_pred ccCCchHHhhhhcCccccccccCCcCCCCcccccCCCcchhhhcchhhccccc-ccCCCCccccccCccCHHHHHHHHHH
Confidence 3589999999887765567999999999999999999998641 111 11111 346999999999999
Q ss_pred HhCCceEEEEeccCCceEEeeCCCC
Q psy17408 71 KNNPFVLSGNLHGGAIVASYPFDDS 95 (96)
Q Consensus 71 ~~~~~~l~is~Hsg~~~i~yPy~~s 95 (96)
++++|+++++||||+++++||||++
T Consensus 183 ~~~~~~l~~s~Hs~~~~~~yP~~~t 207 (395)
T cd03867 183 RSIPFVLSASLHGGDLVVSYPYDFS 207 (395)
T ss_pred hhCCceEEEEccCcceeEEcccccc
Confidence 9999999999999999999999986
No 12
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=99.93 E-value=4.7e-26 Score=174.16 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=77.3
Q ss_pred ccCCCCceeeecCCccCCCccCCCC-----CCCCcCCCCCCCCCCCCCCC-----CCCCCCCCCCCcHHHHHHHHHHHhC
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRN-----NANGVDLNRNFPDQFDSSSE-----RREQPLNVKKLEPETLAMISFIKNN 73 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~-----N~~GVDLNRNFp~~w~~~~~-----~~~y~G~~p~SEpEt~Av~~~~~~~ 73 (96)
-.|+|+++...+.+ ..|+++|. +|.|||||||||..|+..+. ++.|+|+.|+|||||+||++|+.++
T Consensus 105 ~~NPDG~~~~~~~~---~~wRknr~~~~~~~~~GVDLNRNf~~~w~~~g~s~~p~s~~Y~G~~~~sEpEt~av~~~~~~~ 181 (304)
T cd06248 105 VVNPDGFVYTQTSD---RLWRKNRQPTSGSSCVGTDLNRNWPYKWDGGGSSTNPCSETYRGESPGDAPEAKALAAFLNKL 181 (304)
T ss_pred eecCchhhhhccch---hhhhhcCCCCCCCCceeecCCCCCCCcccCCCCCCCCCCCCcCCCCCCccHHHHHHHHHHHhc
Confidence 46899998877755 45888884 57999999999999985431 3789999999999999999999986
Q ss_pred ----CceEEEEeccCCceEEeeCCCC
Q psy17408 74 ----PFVLSGNLHGGAIVASYPFDDS 95 (96)
Q Consensus 74 ----~~~l~is~Hsg~~~i~yPy~~s 95 (96)
+|+++|++||++++|+|||+++
T Consensus 182 ~~~~~~~~~l~~Hs~~~~i~~P~~~~ 207 (304)
T cd06248 182 AEGQGIVGYIDWHSYSQLILYPYGYS 207 (304)
T ss_pred cccCceEEEEEeccCcceEEecCcCC
Confidence 5999999999999999999986
No 13
>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.
Probab=99.93 E-value=1.1e-25 Score=171.99 Aligned_cols=88 Identities=22% Similarity=0.269 Sum_probs=74.6
Q ss_pred ccCCCCceeeecCCccCCCccCCCC---------CCCCcCCCCCCCCCCCCCC-----C-CCCCCCCCCCCcHHHHHHHH
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRN---------NANGVDLNRNFPDQFDSSS-----E-RREQPLNVKKLEPETLAMIS 68 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~---------N~~GVDLNRNFp~~w~~~~-----~-~~~y~G~~p~SEpEt~Av~~ 68 (96)
..|+|+++...++ ..|+++|. |+.|||||||||..|+..+ . .+.|+|+.|+|||||+||++
T Consensus 93 ~~NPDG~~~~~~~----~~wRkNr~~~~~~~~~~n~~GVDLNRNf~~~w~~~~~~~~~p~~~~y~G~~p~SEpEt~Av~~ 168 (293)
T cd06226 93 IVNPDGRKIAEQG----LSQRKNANTSGGSNCSGSSYGVDLNRNYSFGWGGAGASSGDPCSETYRGPAPGSEPETAALED 168 (293)
T ss_pred cccCCcceeeccC----cceeccCCCCCCCCccccccccccccCCCCcCCcCCCCCCCCCCCCcCCCCCCCcHHHHHHHH
Confidence 3689999988764 34677763 4589999999999997542 1 37899999999999999999
Q ss_pred HHHhCC----------------ceEEEEeccCCceEEeeCCCC
Q psy17408 69 FIKNNP----------------FVLSGNLHGGAIVASYPFDDS 95 (96)
Q Consensus 69 ~~~~~~----------------~~l~is~Hsg~~~i~yPy~~s 95 (96)
|+.++. |.++|++||++++|+|||+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~HS~g~~i~~P~g~~ 211 (293)
T cd06226 169 YIRGLFPDQRGPGDTDPAPDDTTGVYLDIHSYSNLVLYPWGWT 211 (293)
T ss_pred HHHhccccccccccccccccccceEEEEeccCCCeEeecCcCC
Confidence 999975 889999999999999999975
No 14
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=99.92 E-value=1.1e-25 Score=175.59 Aligned_cols=85 Identities=54% Similarity=0.917 Sum_probs=77.1
Q ss_pred ccCCCCceeeecCCccCCCccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEecc
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHG 83 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hs 83 (96)
..|+|+++...+++| ...|+++|.||+|||||||||++|+.... +.|+|||||+||++|+++++|++++++|+
T Consensus 103 ~~NPDG~~~~~~~~~-~~~~~~~R~n~~GvDLNRnf~~~~~~~~~------~~~~sepEt~av~~~~~~~~~~l~~~lH~ 175 (372)
T cd03868 103 SMNPDGFERSQEGDC-SCGGYGGRENANNVDLNRNFPDQFEGKLQ------RLSERQPETVAMMKWIRSNPFVLSGNLHG 175 (372)
T ss_pred eeCCchHHhhcccCc-cccCCCccCCCCCccCCCCCCcccCCcCC------CCCCCCHHHHHHHHHHhhCCcEEEEEccC
Confidence 468999999999887 45689999999999999999999986432 68899999999999999999999999999
Q ss_pred CCceEEeeCCCC
Q psy17408 84 GAIVASYPFDDS 95 (96)
Q Consensus 84 g~~~i~yPy~~s 95 (96)
|+++++||||++
T Consensus 176 ~~~~~~yP~~~~ 187 (372)
T cd03868 176 GSVVASYPYDDS 187 (372)
T ss_pred ccEEEecccccc
Confidence 999999999975
No 15
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=99.92 E-value=2.9e-25 Score=168.72 Aligned_cols=91 Identities=20% Similarity=0.191 Sum_probs=78.7
Q ss_pred ccCCCCceeeecCCccCCCccCCC-------CCCCCcCCCCCCCCCCCCC--C----C-CCCCCCCCCCCcHHHHHHHHH
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGR-------NNANGVDLNRNFPDQFDSS--S----E-RREQPLNVKKLEPETLAMISF 69 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R-------~N~~GVDLNRNFp~~w~~~--~----~-~~~y~G~~p~SEpEt~Av~~~ 69 (96)
..|+|+++...++ .....|+++| .|+.|||||||||.+|+.. + . .+.|+|+.|+|||||+||++|
T Consensus 105 ~~NPDG~~~~~~~-~~~~~wrkn~~~~~~~~~~~~GvDLNRNf~~~w~~~~~g~s~~p~~~~y~G~~p~sepEt~av~~~ 183 (295)
T cd03859 105 VVNPDGYEYDETT-GGYRSWRKNRRDNSGDISSSDGVDLNRNYGYKWGYDSGGSSNDPSSETYRGPSAFSEPETQAIRDF 183 (295)
T ss_pred eeCCCcceEEeec-cCccceeccCCCCCCCcCcceeecCCCCCCcccCCCCCCCCCCCCCCCccCCCCCchHHHHHHHHH
Confidence 3689999999885 2345688776 4789999999999999863 2 1 379999999999999999999
Q ss_pred HHhC-CceEEEEeccCCceEEeeCCCC
Q psy17408 70 IKNN-PFVLSGNLHGGAIVASYPFDDS 95 (96)
Q Consensus 70 ~~~~-~~~l~is~Hsg~~~i~yPy~~s 95 (96)
+.+. +|+++|++||++++|+|||+++
T Consensus 184 ~~~~~~~~~~l~~Hs~g~~i~~P~~~~ 210 (295)
T cd03859 184 VESHKNIKTALNYHTYSNLWLYPYGYQ 210 (295)
T ss_pred HHhCCCeEEEEEeecCCceEEeCCcCC
Confidence 9999 8999999999999999999975
No 16
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=99.92 E-value=1.5e-25 Score=176.02 Aligned_cols=80 Identities=51% Similarity=0.800 Sum_probs=72.5
Q ss_pred ccCCCCceeeecCCccCCCccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEecc
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHG 83 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hs 83 (96)
-.|||+++.+.++++. |+++|.|++|||||||||++|... ...+||||+||++|+++++|+++++|||
T Consensus 108 ~~NPDG~e~~~~~~~~---~~~~R~n~~GVDLNRNfp~~~~~~---------~~~~EpEt~Av~~~~~~~~f~l~~~lHs 175 (375)
T cd03863 108 SMNPDGYEKSQEGDRG---GTVGRNNSNNYDLNRNFPDQFFQV---------TDPPQPETLAVMSWLKSYPFVLSANLHG 175 (375)
T ss_pred ccCCchHHheecCCcc---cccccccCCCcccccCCccccccC---------CCCCcHHHHHHHHHHhhCCceEEEEecC
Confidence 3689999999998864 799999999999999999999742 3457999999999999999999999999
Q ss_pred CCceEEeeCCCC
Q psy17408 84 GAIVASYPFDDS 95 (96)
Q Consensus 84 g~~~i~yPy~~s 95 (96)
|+++++||||++
T Consensus 176 g~~~~~yPy~~~ 187 (375)
T cd03863 176 GSLVVNYPFDDD 187 (375)
T ss_pred CCEEEEccCcCC
Confidence 999999999975
No 17
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=99.91 E-value=5.7e-25 Score=172.02 Aligned_cols=80 Identities=33% Similarity=0.509 Sum_probs=72.0
Q ss_pred ccCCCCceeeecCCccCCCccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEecc
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHG 83 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hs 83 (96)
-.|||+++.+.+++|.. ..+|.||+|||||||||+.| .|+.|+|||||+||++|+++.+|+++++|||
T Consensus 104 ~~NPDG~e~~~~~~~~~---~~~r~na~GvDLNRNf~~~~---------~g~~~~sepEt~Av~~~~~~~~f~l~~~lH~ 171 (363)
T cd06245 104 SLNPDGREKAQEKQCTS---KEGHTNAHGKDLDTDFTSNA---------SNMSADVQPETKAIIDNLISKDFTLSVALDG 171 (363)
T ss_pred ccCCchHHHeecCCCcc---cCCCCCcccccCCCCCCccc---------CCCCCCCcHHHHHHHHHHHhCCceEEEEEcC
Confidence 35899999999988653 46789999999999999754 4678999999999999999999999999999
Q ss_pred CCceEEeeCCCC
Q psy17408 84 GAIVASYPFDDS 95 (96)
Q Consensus 84 g~~~i~yPy~~s 95 (96)
|+++++||||++
T Consensus 172 ~~~~~~yPy~~~ 183 (363)
T cd06245 172 GSVVATYPYDKP 183 (363)
T ss_pred CcEEEEecCCCC
Confidence 999999999986
No 18
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=99.91 E-value=4.5e-25 Score=174.79 Aligned_cols=93 Identities=41% Similarity=0.608 Sum_probs=75.5
Q ss_pred ccCCCCceeeecCCccCCCccCCCCCCCCcCCCCCCCCCCCC------CC-C----CCCCCCC---CCCCcHHHHHHHHH
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRNNANGVDLNRNFPDQFDS------SS-E----RREQPLN---VKKLEPETLAMISF 69 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~N~~GVDLNRNFp~~w~~------~~-~----~~~y~G~---~p~SEpEt~Av~~~ 69 (96)
-.|||+++.+.++.++...|+++|.|++|||||||||+++.. .+ . ...+.++ ....||||+|||+|
T Consensus 108 ~~NPDG~e~~~~~~~~~~~w~~~R~Na~GvDLNRNFp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pEt~Avm~w 187 (402)
T cd03865 108 SLNPDGFEKAASQPGELKDWFVGRSNAQGIDLNRNFPDLDRIVYVNEREGGPNNHLLKNMKKAVDENTKLAPETKAVIHW 187 (402)
T ss_pred eeCCchHHhhhhcCccccchhhhcccccCcccCCCCCcccchhhhhhccCCCccccccccccccccccCCChHHHHHHHH
Confidence 468999999988777777899999999999999999986321 11 1 1122222 23689999999999
Q ss_pred HHhCCceEEEEeccCCceEEeeCCCCC
Q psy17408 70 IKNNPFVLSGNLHGGAIVASYPFDDSK 96 (96)
Q Consensus 70 ~~~~~~~l~is~Hsg~~~i~yPy~~s~ 96 (96)
+++.+|+|+++||+|+.|++||||.++
T Consensus 188 ~~~~~FvlsanlHgG~lva~YP~D~~~ 214 (402)
T cd03865 188 IMDIPFVLSANLHGGDLVANYPYDETR 214 (402)
T ss_pred HHhCCcEEEEEccCccEEEECCCCCCC
Confidence 999999999999999999999999763
No 19
>smart00631 Zn_pept Zn_pept.
Probab=99.91 E-value=3.9e-24 Score=160.71 Aligned_cols=89 Identities=30% Similarity=0.381 Sum_probs=80.0
Q ss_pred ccCCCCceeeecCCccCCCccCCCC---CCCCcCCCCCCCCCCCCCCC--CCCCCCCCCCCcHHHHHHHHHHHhC-CceE
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRN---NANGVDLNRNFPDQFDSSSE--RREQPLNVKKLEPETLAMISFIKNN-PFVL 77 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~---N~~GVDLNRNFp~~w~~~~~--~~~y~G~~p~SEpEt~Av~~~~~~~-~~~l 77 (96)
-.|+|+++...+++ ..|+++|. |++|||||||||..|+.... .+.|+|+.|+|||||+||++++.+. ++.+
T Consensus 100 ~~NPDG~~~~~~~~---~~wr~~r~~~~~~~GvDLNRnf~~~w~~~~~p~~~~y~G~~~~sepEt~ai~~~~~~~~~~~~ 176 (277)
T smart00631 100 VLNPDGYEYTHTGD---RLWRKNRSPNSNCRGVDLNRNFPFHWGKTGNPCSETYAGPSPFSEPETKAVRDFIRSNRRFVL 176 (277)
T ss_pred eecCchhhheeccc---ccccCCCCCCCCCcCcccCCCCCCCCCCCCCCCCCCcCCCCCCCcHHHHHHHHHHHhcCCeeE
Confidence 46899999888776 35899998 99999999999999987433 4799999999999999999999999 8999
Q ss_pred EEEeccCCceEEeeCCCC
Q psy17408 78 SGNLHGGAIVASYPFDDS 95 (96)
Q Consensus 78 ~is~Hsg~~~i~yPy~~s 95 (96)
++++|+++++++|||+++
T Consensus 177 ~id~Hs~~~~i~~p~~~~ 194 (277)
T smart00631 177 YIDLHSYSQLILYPYGYT 194 (277)
T ss_pred EEEeccCCcEEEecCcCC
Confidence 999999999999999875
No 20
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=99.91 E-value=1.9e-24 Score=168.32 Aligned_cols=85 Identities=51% Similarity=0.795 Sum_probs=77.9
Q ss_pred ccCCCCceeeecCCccCCCccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEecc
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHG 83 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hs 83 (96)
-.|+|+++...++++ .|+++|.|++|||||||||..|...+. +|+.|+|||||+||++|+++++|++++++|+
T Consensus 104 ~~NPDG~~~~~~~~~---~w~~~R~n~~GvDLNRnf~~~~~~~~~----~G~~~~sepEt~al~~~~~~~~~~~~i~~Hs 176 (374)
T cd03858 104 SMNPDGYEKAAEGDC---GGLTGRYNANGVDLNRNFPDLFFTNYR----SSDNGPRQPETKAVMNWIKSIPFVLSANLHG 176 (374)
T ss_pred ccCCchhhhhcccCC---cccccCCCCcceecccCCCcccccccc----cCCCcccCHHHHHHHHHHhhCCceEEEEccC
Confidence 368999999888874 589999999999999999999986544 6999999999999999999999999999999
Q ss_pred CCceEEeeCCCC
Q psy17408 84 GAIVASYPFDDS 95 (96)
Q Consensus 84 g~~~i~yPy~~s 95 (96)
++++++|||+++
T Consensus 177 ~~~~~~yp~~~~ 188 (374)
T cd03858 177 GALVANYPYDDS 188 (374)
T ss_pred CceEEEcccccC
Confidence 999999999986
No 21
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=99.91 E-value=3.6e-24 Score=159.74 Aligned_cols=91 Identities=24% Similarity=0.301 Sum_probs=75.0
Q ss_pred ccCCCCceeeecCCccC-------CCccC-------CCCCCCCcCCCCCCCCCCCCCC-----C-CCCCCCCCCCCcHHH
Q psy17408 4 YCDCKSNWLPYEGSCNS-------LARFV-------GRNNANGVDLNRNFPDQFDSSS-----E-RREQPLNVKKLEPET 63 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~-------~~w~~-------~R~N~~GVDLNRNFp~~w~~~~-----~-~~~y~G~~p~SEpEt 63 (96)
-.|+|+++...++.... ..|++ +|.||+|||||||||..|...+ . +..|+|+.|+|||||
T Consensus 72 ~~NPDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~GVDLNRNf~~~w~~~~~~s~~p~~~~y~G~~p~SEpEt 151 (255)
T cd06229 72 MVNPDGVEIVQNGPYAIRNYYLELLVINAGSINFKEWKANARGVDLNRNFPAGWEKEKAGPKAPAPRNYKGEQPLSEPET 151 (255)
T ss_pred CccCCchheeeecccccccchhhhHHhhcCCCcccccccCCcccccCCCCCCCCCcCCCCCCCCCccCcCCCCCCCchhH
Confidence 46899999887753221 12222 3678999999999999997542 1 379999999999999
Q ss_pred HHHHHHHHhCCceEEEEeccCCceEEeeCCC
Q psy17408 64 LAMISFIKNNPFVLSGNLHGGAIVASYPFDD 94 (96)
Q Consensus 64 ~Av~~~~~~~~~~l~is~Hsg~~~i~yPy~~ 94 (96)
+||++|++++++.++|++|+++++|+|||+.
T Consensus 152 ral~~~~~~~~~~~~i~~Hs~g~~i~~~~~~ 182 (255)
T cd06229 152 IALAELTRENRFRAVLAYHSQGEEIYWGYGG 182 (255)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCeEEecCCC
Confidence 9999999999999999999999999999975
No 22
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=99.90 E-value=6.8e-24 Score=160.86 Aligned_cols=89 Identities=21% Similarity=0.181 Sum_probs=76.7
Q ss_pred ccCCCCceeeecCCccCCCccCCCCC-----CCCcCCCCCCCCCCCCCCC-----CCCCCCCCCCCcHHHHHHHHHHHhC
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRNN-----ANGVDLNRNFPDQFDSSSE-----RREQPLNVKKLEPETLAMISFIKNN 73 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~N-----~~GVDLNRNFp~~w~~~~~-----~~~y~G~~p~SEpEt~Av~~~~~~~ 73 (96)
-.|+|+++...+++ ..|+++|.+ ++|||||||||..|...+. .+.|+|+.|+|||||+||++++++.
T Consensus 98 ~~NPDG~~~~~~~~---~~wrknr~~~~~~~~~GvDLNRnf~~~w~~~~~~~~p~~~~y~G~~~~sepEt~al~~~~~~~ 174 (294)
T cd03860 98 VANPDGYEYTHTTD---RLWRKNRSPNSGGGCVGVDLNRNFDYHWGGGGASSDPCSETYAGPSAFSEPETRAVRDFLLSL 174 (294)
T ss_pred eecCCchhhhcccc---chhcccCCCCCCCCceeeccCCCCCCCCccCCCCCCCCCCCccCCCCCchHHHHHHHHHHHhc
Confidence 35889998876654 458888864 7899999999999986422 3789999999999999999999998
Q ss_pred --CceEEEEeccCCceEEeeCCCC
Q psy17408 74 --PFVLSGNLHGGAIVASYPFDDS 95 (96)
Q Consensus 74 --~~~l~is~Hsg~~~i~yPy~~s 95 (96)
+|+++|++|+++++|+|||+++
T Consensus 175 ~~~~~~~ld~Hs~~~~i~~P~~~~ 198 (294)
T cd03860 175 RGRIKAYLSLHSYGQLILYPWGYT 198 (294)
T ss_pred cccEEEEEEeccCCceEEcCCCCC
Confidence 7999999999999999999874
No 23
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=99.90 E-value=4.8e-24 Score=167.35 Aligned_cols=79 Identities=47% Similarity=0.769 Sum_probs=69.9
Q ss_pred ccCCCCceeeecCCccCCCccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEecc
Q psy17408 4 YCDCKSNWLPYEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHG 83 (96)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~w~~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hs 83 (96)
-.|||+++... .+| .|+++|.|++|||||||||+.|... ...|||||+||++|+++.+|+++++||+
T Consensus 107 ~~NPDG~e~~~-~~~---~~~~~R~N~~GvDLNRnf~~~w~~~---------~~~sepEt~al~~~~~~~~~~l~~~~H~ 173 (376)
T cd03866 107 SMNPDGFEASK-PDC---YYSVGRYNKNGYDLNRNFPDAFEEN---------NEQRQPETRAVMEWLKSETFVLSANLHG 173 (376)
T ss_pred ccCCchhhhcc-ccc---ccccccccCCCcccCcCchhhhccC---------CCCCcHHHHHHHHHHHhcCcEEEEEccC
Confidence 46899999983 443 4799999999999999999999853 2349999999999999999999999999
Q ss_pred CCceEEeeCCCC
Q psy17408 84 GAIVASYPFDDS 95 (96)
Q Consensus 84 g~~~i~yPy~~s 95 (96)
|+++++||||++
T Consensus 174 ~~~~~~YP~~~~ 185 (376)
T cd03866 174 GALVASYPYDNG 185 (376)
T ss_pred CceEEeccccCC
Confidence 999999999985
No 24
>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.90 E-value=1.6e-23 Score=163.99 Aligned_cols=64 Identities=27% Similarity=0.357 Sum_probs=59.0
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhC-CceEEEEeccCCceEEeeCCCC
Q psy17408 31 NGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNN-PFVLSGNLHGGAIVASYPFDDS 95 (96)
Q Consensus 31 ~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~-~~~l~is~Hsg~~~i~yPy~~s 95 (96)
.|||||||||..|.+.+ .++|+|+.|+|||||+||++|+.++ ++.++|++||+|++|+|||+++
T Consensus 208 ~GvDlNRNf~~~W~~~~-~~~y~G~~p~SEpEt~av~~~~~~~~~i~~~is~Hsyg~~il~P~g~~ 272 (360)
T cd06905 208 EGLDFNRNFPHDWRPEG-EQYGAGPFPFSEPETRAVVEFWTDHPNINGFISYHTYSGVILRPYSDK 272 (360)
T ss_pred cCCCcccCcCCCCCCCC-CcCCCCCCCCChHHHHHHHHHHhcCCCeEEEEEecCCcCeeeeCCCCC
Confidence 59999999999998653 4689999999999999999999987 5899999999999999999986
No 25
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=99.86 E-value=1.5e-22 Score=150.82 Aligned_cols=88 Identities=30% Similarity=0.325 Sum_probs=72.1
Q ss_pred cCCCCceeeecCCccCCCccCCCCCCCCcCCCCCCCCCCCCCC-----CCCCCCCCCCCCcHHHHHHHHHHHhCCceEEE
Q psy17408 5 CDCKSNWLPYEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSS-----ERREQPLNVKKLEPETLAMISFIKNNPFVLSG 79 (96)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~w~~~R~N~~GVDLNRNFp~~w~~~~-----~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~i 79 (96)
-|+|++++....+ ..|+++|.|++|||||||||..|+..+ ....|+|+.|+|||||+||++++++.++++++
T Consensus 97 ~NPDG~~~~~~~~---~~w~~~R~n~~GvDlNRnf~~~w~~~~~~~~~~~~~y~g~~~~sepEt~al~~~~~~~~~~~~i 173 (279)
T PF00246_consen 97 VNPDGYEYGTSGD---RGWRKNRSNANGVDLNRNFPYQWNEEGSSSNPCSETYRGPAPFSEPETRALRNLIQDWNPDFFI 173 (279)
T ss_dssp SSHHHHHHHHHT----TTCCSTSSBTTS--GGGSSSSSTTSSSSBSSTTSTTB--SSTTTSHHHHHHHHHHHHTTEEEEE
T ss_pred ecccceeeeeecc---cccccccccccccccccccCcccccccccCCCCCcccCCCcchhhhHHHHHHHHHhhcceeEEE
Confidence 3667777776644 458999999999999999999996542 13789999999999999999999999999999
Q ss_pred EeccCCceEEeeCCCC
Q psy17408 80 NLHGGAIVASYPFDDS 95 (96)
Q Consensus 80 s~Hsg~~~i~yPy~~s 95 (96)
++|++++.++|||+++
T Consensus 174 d~H~~~~~~~~p~~~~ 189 (279)
T PF00246_consen 174 DFHSGGNAILYPYGYS 189 (279)
T ss_dssp EEEESSSEEEESESSS
T ss_pred eccccccceeeecccc
Confidence 9999999999999864
No 26
>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.86 E-value=1.1e-21 Score=148.88 Aligned_cols=75 Identities=25% Similarity=0.326 Sum_probs=64.6
Q ss_pred CCccCCCCCCCCcCCCCCCCCCCCC--------CC--C-CCCCCCCC-CCCcHHHHHHHHHHHhC----CceEEEEeccC
Q psy17408 21 LARFVGRNNANGVDLNRNFPDQFDS--------SS--E-RREQPLNV-KKLEPETLAMISFIKNN----PFVLSGNLHGG 84 (96)
Q Consensus 21 ~~w~~~R~N~~GVDLNRNFp~~w~~--------~~--~-~~~y~G~~-p~SEpEt~Av~~~~~~~----~~~l~is~Hsg 84 (96)
|.|+++|.|++|||||||||..|.. .. . ...|.|+. |+|||||+||++++++. +++++|++|||
T Consensus 80 G~~~~~R~n~~GVDLNRNfp~~~~~~~~~~~~G~~~~p~~~~Y~G~~~~~sEpEt~al~~~~~~~~~~~~~~~~ld~HSg 159 (273)
T cd03862 80 GMALKTRSNGNGVDLMRNAPVDAEDKPPFLVGGQRLSPRLPWYRGKNGAGMELEAQALCRFVRELLFESPFSIALDCHSG 159 (273)
T ss_pred HHHhcccCCCCCcccCCCCCCCccccccccccCccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcccCCeEEEEEECCC
Confidence 4689999999999999999998752 11 1 26899986 99999999999999985 69999999996
Q ss_pred ---CceEEeeCCCC
Q psy17408 85 ---AIVASYPFDDS 95 (96)
Q Consensus 85 ---~~~i~yPy~~s 95 (96)
+++|+|||+++
T Consensus 160 ~G~~~~i~~Pyg~~ 173 (273)
T cd03862 160 FGLVDRIWFPYAYT 173 (273)
T ss_pred CCccCEEEcCCcCC
Confidence 48999999986
No 27
>KOG2649|consensus
Probab=99.84 E-value=1.9e-21 Score=156.20 Aligned_cols=89 Identities=46% Similarity=0.737 Sum_probs=75.5
Q ss_pred cCCCCceeeecCCccCCCccCCCCCCCCcCCCCCCCCCCCCCC---------CC-CCCCCCCCCCcHHHHHHHHHHHhCC
Q psy17408 5 CDCKSNWLPYEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSS---------ER-REQPLNVKKLEPETLAMISFIKNNP 74 (96)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~w~~~R~N~~GVDLNRNFp~~w~~~~---------~~-~~y~G~~p~SEpEt~Av~~~~~~~~ 74 (96)
-++|++|+|.++++. |..+|+|++|||||||||++.+.-. .+ ..+.-+....+|||+||++|+++.+
T Consensus 172 mNPDGyE~a~~~~~~---~~~GR~Nang~DLNrnFPd~~~~~~~~~~~~~~n~~l~~~~~~~~~~~pEt~Avm~W~~~~p 248 (500)
T KOG2649|consen 172 MNPDGYEIAKRGDRG---WATGRNNANGVDLNRNFPDQFRLVYFIVTFDLLNSHLIMFNDDLNLRQPETIAVMKWLRDIP 248 (500)
T ss_pred cCcchhhhhhccccc---ceecccCccccchhccCcccccceeeeeeecccccccccccccccccCccHHHHHHHHhhcc
Confidence 479999999997754 7999999999999999999854321 01 1255567789999999999999999
Q ss_pred ceEEEEeccCCceEEeeCCCCC
Q psy17408 75 FVLSGNLHGGAIVASYPFDDSK 96 (96)
Q Consensus 75 ~~l~is~Hsg~~~i~yPy~~s~ 96 (96)
|+|+++||+|..+++||||.++
T Consensus 249 FvLSAnLHGG~lvanYPfD~~~ 270 (500)
T KOG2649|consen 249 FVLSANLHGGALVANYPFDDTE 270 (500)
T ss_pred eeeeccccCCceEEEccccCCc
Confidence 9999999999999999999763
No 28
>cd06904 M14_MpaA_like Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A (MpaA) and related proteins. MpaA is a member of the M14 family of metallocarboxypeptidases (MCPs), however it has an exceptional type of activity, it hydrolyzes the gamma-D-glutamyl-meso-diaminopimelic acid (gamma-D-Glu-Dap) bond in murein peptides. MpaA is specific for cleavage of the gamma-D-Glu-Dap bond of free murein tripeptide; it may also cleave murein tetrapeptide. MpaA has a different substrate specificity and cellular role than endopeptidase I, ENP1 (ENP1 does not belong to this group). MpaA works on free murein peptide in the recycling pathway.
Probab=99.74 E-value=4.7e-18 Score=121.18 Aligned_cols=68 Identities=32% Similarity=0.299 Sum_probs=60.5
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCC--CCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEeccCCceEEeeC
Q psy17408 25 VGRNNANGVDLNRNFPDQFDSSSE--RREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAIVASYPF 92 (96)
Q Consensus 25 ~~R~N~~GVDLNRNFp~~w~~~~~--~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hsg~~~i~yPy 92 (96)
++|.|++|||||||||..|..... +..|+|+.++|||||++|++++++.++.++|++|++...+.++.
T Consensus 49 ~~R~n~~gvDLNRnFp~~~~~~~~~~~~~~~G~~~~sepEt~al~~~~~~~~~~~~idlHs~~~~~~~~~ 118 (178)
T cd06904 49 ATRCNANGVDLNRNFPTKDWPPGASRYRRYPGPKPGSEPESRALMDLIERFKPDVVVSFHAPLGVLDGDG 118 (178)
T ss_pred CcccCCCCcChhhcCCccccccCCCcccccCCCCCCCCHHHHHHHHHHHhcCCeEEEEeCCCCCeecCCC
Confidence 678899999999999999976543 36899999999999999999999999999999999998887653
No 29
>cd00596 Peptidase_M14_like The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring
Probab=99.67 E-value=1.4e-16 Score=113.08 Aligned_cols=61 Identities=43% Similarity=0.617 Sum_probs=56.2
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEeccCCceEEeeCCCC
Q psy17408 25 VGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAIVASYPFDDS 95 (96)
Q Consensus 25 ~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hsg~~~i~yPy~~s 95 (96)
.+|.|.+|||||||||..|.. .+++|||+++|++++++.++++++++|++++.++|||+++
T Consensus 56 ~~R~n~~g~DlNR~f~~~~~~----------~~~~~~e~~~~~~~~~~~~~~~~idlH~~~~~~~~p~~~~ 116 (196)
T cd00596 56 NWRKNANGVDLNRNFPGLWGK----------GPLSEPETRALAELIQQRKVDLYIDLHSGSLGVLYPYSHS 116 (196)
T ss_pred eEEeCCCCcCccCCCCCcccC----------CCCCcHHHHHHHHHHHhCCceEEEEEecCCceEEecCCCC
Confidence 578899999999999987763 4789999999999999999999999999999999999875
No 30
>PRK10602 murein peptide amidase A; Provisional
Probab=99.67 E-value=8.4e-17 Score=120.20 Aligned_cols=61 Identities=34% Similarity=0.395 Sum_probs=51.9
Q ss_pred cCCCCCCCCcCCCCCCCC-CCCCCC---------CC---CCCCCCCCCCcHHHHHHHHHHHhCCceEEEEeccC
Q psy17408 24 FVGRNNANGVDLNRNFPD-QFDSSS---------ER---REQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGG 84 (96)
Q Consensus 24 ~~~R~N~~GVDLNRNFp~-~w~~~~---------~~---~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hsg 84 (96)
..+|.||+|||||||||. .|...+ .+ ..|+|+.|+|||||+|+++|+.++.+..++++|+.
T Consensus 86 ~~~R~n~~GvDLNRnFp~~~w~~~~~~~~w~~~~~~~~~~~y~G~~p~SepEt~al~~~i~~~~~~~~~s~HsP 159 (237)
T PRK10602 86 LGLRANANGVDLNRNFPAANWKEGETVYRWNSAAEERDVVLLTGDKPGSEPETQALCQLIHRLQPAWVVSFHDP 159 (237)
T ss_pred cccccCCCCCchhhcCCCcccccccccccccCCCCccchhhccCCCCCCCHHHHHHHHHHHHcCCCEEEEeecc
Confidence 346889999999999997 675321 22 47999999999999999999999988999999993
No 31
>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=99.64 E-value=4.4e-16 Score=116.41 Aligned_cols=63 Identities=27% Similarity=0.337 Sum_probs=53.6
Q ss_pred cCCCCceeeecCCccCCCccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhC-----CceEEE
Q psy17408 5 CDCKSNWLPYEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNN-----PFVLSG 79 (96)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~w~~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~-----~~~l~i 79 (96)
.|||++++. .+|.|++||||||||+ ++|||||+||++++++. ++.++|
T Consensus 100 ~NPDG~~~~-----------~wR~N~~GvDLNRnw~----------------~~sepEt~a~~~~~~~~~~~~~~~~~~i 152 (244)
T cd06237 100 MNPDGVDLG-----------HWRHNANGIDLNRDWS----------------NFNQPETRAIRDYLVRLVKEGGKIVFAL 152 (244)
T ss_pred eCcchhhcC-----------CccCCCCCcCCCCCCC----------------CCCCHHHHHHHHHHHHHhccCCCEEEEE
Confidence 467776641 3588999999999985 57999999999999863 799999
Q ss_pred EeccCCceEEeeCCC
Q psy17408 80 NLHGGAIVASYPFDD 94 (96)
Q Consensus 80 s~Hsg~~~i~yPy~~ 94 (96)
++|++++.++|||++
T Consensus 153 d~Hs~~~~i~~~~~~ 167 (244)
T cd06237 153 DFHSTWHDVFYTMPE 167 (244)
T ss_pred EeccCCcceEecCCC
Confidence 999999999999864
No 32
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=99.58 E-value=3e-15 Score=113.12 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=52.3
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhC------CceEEEEeccCCceE-EeeCCCC
Q psy17408 25 VGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNN------PFVLSGNLHGGAIVA-SYPFDDS 95 (96)
Q Consensus 25 ~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~------~~~l~is~Hsg~~~i-~yPy~~s 95 (96)
..|.|+.||||||||+ ++.|++||||+||++++++. +++++|++|++++++ +|||+++
T Consensus 101 n~R~~~~G~DLNR~w~-------------~p~~~~~PEv~av~~~i~~~~~~~~~~i~~~lD~H~hs~~~~~F~yG~~ 165 (261)
T cd06908 101 NYRCSLMGHDLNRHWH-------------DPSPWAHPTLHAVKNLLKELDNDSTTQLDFYIDLHAHSSLMNCFIYGNT 165 (261)
T ss_pred CCcCcCcCcCCCCCCC-------------CCCcccChHHHHHHHHHHHhhhccccCeeEEEEeeccccccceeecccc
Confidence 4689999999999996 36789999999999999874 699999999999999 8999975
No 33
>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=99.58 E-value=2.1e-15 Score=114.07 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=48.5
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEeccCCceEEeeCCC
Q psy17408 25 VGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAIVASYPFDD 94 (96)
Q Consensus 25 ~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hsg~~~i~yPy~~ 94 (96)
.+|.||+||||||||+ ++.++|||||++|+++|++.+++++|++|+++++ ||.+
T Consensus 114 ~~R~n~~GvDLNRnw~-------------~p~~~s~PEt~av~~~~~~~~~~~~ld~Hs~~~~---py~f 167 (263)
T cd06234 114 HLRTNAAGANLNREWA-------------EPSAERSPEVFAVRQRMEETGVDFFLDVHGDEAL---PYNF 167 (263)
T ss_pred CCccCCCCCCCCCCCC-------------CCCCCCCHHHHHHHHHHHhcCCeEEEEeCCCCCC---CccE
Confidence 3588999999999996 3578999999999999999999999999999997 6664
No 34
>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M
Probab=99.45 E-value=1.3e-13 Score=104.37 Aligned_cols=55 Identities=25% Similarity=0.336 Sum_probs=48.8
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhC-----CceEEEEeccCC---ceEEeeCC
Q psy17408 26 GRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNN-----PFVLSGNLHGGA---IVASYPFD 93 (96)
Q Consensus 26 ~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~-----~~~l~is~Hsg~---~~i~yPy~ 93 (96)
+|.|+.||||||||+ ++.+++||||++|.+++.+. ++++++++|+++ ++++|-+.
T Consensus 112 ~R~n~~G~DLNR~~~-------------~p~~~~~pE~~~~~~~~~~~~~~~~~~~~~idlH~~~~~~~~f~yG~~ 174 (269)
T cd03856 112 YRCSLSGVDLNRQWQ-------------NPSPDLHPEIYLVKGLMLYLAAGKRGVLFYCDFHGHSRKKNVFMYGCS 174 (269)
T ss_pred CcCCCCCCCcCCCCC-------------CCCCCCCCCHHHHHHHHHHHHhccCCceEEEEecCCCccCceEeecCC
Confidence 588999999999996 46899999999999999986 799999999999 77875544
No 35
>cd06238 Peptidase_M14-like_1_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=99.40 E-value=5.7e-13 Score=101.17 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=48.8
Q ss_pred CccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEeccCC---ceEEee
Q psy17408 22 ARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGA---IVASYP 91 (96)
Q Consensus 22 ~w~~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hsg~---~~i~yP 91 (96)
.|-.+|.||.||||||||. ++|||||++|++++.+.++++++++|+++ .++++|
T Consensus 130 ~wp~~R~n~~g~DLNRD~~----------------~~s~pEtra~~~~~~~~~p~~~~D~H~~g~~~~~~~~P 186 (271)
T cd06238 130 PWPGGRTNHYWFDLNRDWL----------------PLTQPESRGRLAAYHEWRPNVVVDFHEMGTNSTYFFAP 186 (271)
T ss_pred CCccccccccCcccccccc----------------cccCHHHHHHHHHHHhcCCeEEEEeccCCCccceEEeC
Confidence 5667899999999999995 57999999999999999999999999987 677878
No 36
>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc
Probab=99.35 E-value=1.5e-12 Score=97.84 Aligned_cols=58 Identities=33% Similarity=0.424 Sum_probs=49.5
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhC----CceEEEEeccCCceE-EeeCCCC
Q psy17408 25 VGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNN----PFVLSGNLHGGAIVA-SYPFDDS 95 (96)
Q Consensus 25 ~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~----~~~l~is~Hsg~~~i-~yPy~~s 95 (96)
..|.|++||||||||.. +.+++|||++++.+++++. ++++++++|+++... .|+|+..
T Consensus 103 ~~R~n~~GvDLNR~w~~-------------p~~~~~PE~~~~~~~i~~~~~~~~~~~~iDlH~~s~~~~~F~yg~~ 165 (258)
T cd06235 103 NYRCSLSGIDLNRQWKN-------------PDKKLHPEIYHVKQLIKKLSQERNIALFIDLHGHSRKKNSFMYGCS 165 (258)
T ss_pred CCcCCCCCCCcCCCCCC-------------CCcccCcHHHHHHHHHHHHhccCCceEEEecccccccCCeeeecCC
Confidence 46999999999999974 4579999999999999986 899999999999763 4677653
No 37
>cd06239 Peptidase_M14-like_1_2 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.32 E-value=2.3e-12 Score=95.98 Aligned_cols=51 Identities=33% Similarity=0.397 Sum_probs=45.5
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEeccCCceEEeeCC
Q psy17408 25 VGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAIVASYPFD 93 (96)
Q Consensus 25 ~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hsg~~~i~yPy~ 93 (96)
.+|.|++||||||||+. .+|||++++++++.+.++.++++||+++.+ |..+
T Consensus 91 ~~R~N~~GvDLNRdf~~----------------~s~PEtr~l~~~~~~~~pd~~iDlH~~~~~--y~~~ 141 (231)
T cd06239 91 YTRVNANGVDLNRDAQD----------------LSQPESRLLRDVYDGFQPDFCFNLHDQRTI--YGVE 141 (231)
T ss_pred cccCCCcCCcCCCCCCC----------------CChHHHHHHHHHHHhcCCEEEEEECCCCCc--cCCC
Confidence 57899999999999973 589999999999999999999999999997 5443
No 38
>cd06244 Peptidase_M14-like_1_7 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.29 E-value=6.4e-12 Score=95.61 Aligned_cols=51 Identities=35% Similarity=0.358 Sum_probs=44.7
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEeccCC-ceEEee
Q psy17408 25 VGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGA-IVASYP 91 (96)
Q Consensus 25 ~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hsg~-~~i~yP 91 (96)
.+|.|++||||||||.. .++|||++|++++.+.++++++++|++. ..+..|
T Consensus 126 ~~R~Na~G~DLNRD~~~----------------~sqpEt~av~~~~~~w~P~~~~dlHg~~~~~~~~P 177 (268)
T cd06244 126 GTRENANGFDLNRDNSF----------------QTQPETQAIVALIAEWNPASFLDLHGYVEGFLIEP 177 (268)
T ss_pred eeecCCCccccCCCCCc----------------ccCHHHHHHHHHHHHhCCeEEEEeCCCCCceEEcC
Confidence 47999999999999953 5999999999999999999999999988 444446
No 39
>cd06243 Peptidase_M14-like_1_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.20 E-value=2.7e-11 Score=90.41 Aligned_cols=45 Identities=27% Similarity=0.293 Sum_probs=41.4
Q ss_pred cCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEeccC
Q psy17408 24 FVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGG 84 (96)
Q Consensus 24 ~~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hsg 84 (96)
+.+|.|+.||||||||+. ++||||++|++++.+.++.+++++|++
T Consensus 86 ~~~R~n~~g~DlNRd~~~----------------~~~pEt~al~~~~~~~~p~~~iDlHe~ 130 (236)
T cd06243 86 ADTRSNADGIDINRDHLL----------------LNTPEAQALASVLRDYRPDVVVDAHEY 130 (236)
T ss_pred cCCcCCCCCcccCCCCCC----------------CCCHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 357999999999999963 689999999999999999999999999
No 40
>cd06241 Peptidase_M14-like_1_4 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.15 E-value=3.8e-11 Score=90.78 Aligned_cols=55 Identities=25% Similarity=0.248 Sum_probs=47.8
Q ss_pred cCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEeccCCceEEeeCCCC
Q psy17408 24 FVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAIVASYPFDDS 95 (96)
Q Consensus 24 ~~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hsg~~~i~yPy~~s 95 (96)
..+|.|++||||||||+. .++|||+|+++++.+.++.++|++|+.+.. .|+|+.+
T Consensus 117 ~~~R~na~g~DLNRdf~~----------------~~~pEtra~~~~~~~~~p~~~iD~H~~~g~-~~~yd~t 171 (266)
T cd06241 117 YGWRGNARNLNLNRDFIK----------------LDAPEMRAFAKLFNKWNPDLFIDNHVTDGA-DYQYDLT 171 (266)
T ss_pred cCceecccceecCCCCcc----------------cCCHHHHHHHHHHHHhCCCEEEEeccCCCc-Cceeeec
Confidence 468999999999999973 479999999999999999999999988764 6777653
No 41
>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=99.15 E-value=5.7e-11 Score=91.74 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=49.8
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhC----CceEEEEeccCCceEE-eeCCCC
Q psy17408 25 VGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNN----PFVLSGNLHGGAIVAS-YPFDDS 95 (96)
Q Consensus 25 ~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~----~~~l~is~Hsg~~~i~-yPy~~s 95 (96)
..|.|+.|+||||+| .++.|++|||+.||.++++.. +++++|+||+.++... |+|+.+
T Consensus 126 ~~R~~~~G~DLNR~y-------------~~p~~~~~Pei~aik~~i~~~~~~~~i~~yiDlH~hs~~~~~F~Yg~~ 188 (304)
T cd06236 126 HYRTDTRGVNLNRVY-------------LNPDPELHPSIYAIKKLILYLHEESRLAFYIDLHAHASKRGCFIYGNA 188 (304)
T ss_pred ccccCCcCCCcCcCC-------------CCCCcccCHHHHHHHHHHHHhhccCCceEEEEecccccccceEeeecC
Confidence 348899999999986 357899999999999999863 5999999999999876 888754
No 42
>cd03857 Peptidase_M14-like_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.15 E-value=7.8e-11 Score=86.75 Aligned_cols=51 Identities=35% Similarity=0.412 Sum_probs=44.1
Q ss_pred cCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEeccC--CceEEe
Q psy17408 24 FVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGG--AIVASY 90 (96)
Q Consensus 24 ~~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hsg--~~~i~y 90 (96)
+.+|.|++|+||||+|+. .++|||+++.+++.+.++.+++++|++ +....|
T Consensus 87 ~~~R~n~~g~DLNRd~~~----------------~~~pEt~~~~~~~~~~~p~~~iDlH~~~~g~~~~~ 139 (226)
T cd03857 87 LFTRENANGLDLNRDFLK----------------LTQPETRAVREVFIEWKPQFFIDLHEYGFGAVSFY 139 (226)
T ss_pred hccccCCCcccCCCCCCC----------------cCCHHHHHHHHHHHHcCCeEEEEcCCCCCcceecC
Confidence 348999999999999974 489999999999999999999999999 544444
No 43
>cd06231 Peptidase_M14-like_4 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.02 E-value=6.5e-10 Score=82.94 Aligned_cols=47 Identities=30% Similarity=0.502 Sum_probs=42.5
Q ss_pred cCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhC--CceEEEEeccCC
Q psy17408 24 FVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNN--PFVLSGNLHGGA 85 (96)
Q Consensus 24 ~~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~--~~~l~is~Hsg~ 85 (96)
..+|.|++|+|||||||. +.++||++++++++.+. ++.++|+||+++
T Consensus 92 ~~~R~n~~g~DLNR~F~~---------------~~~~~E~~al~~~~~~~~~~~~~~IDLH~~~ 140 (236)
T cd06231 92 AITRWNRNGIDPNRSFRS---------------ESPSPEVRLLMEWLRRLGAAFDLHIDLHEDT 140 (236)
T ss_pred cCccCCCCCccccCCCCC---------------CCCCHHHHHHHHHHHHhCCCcEEEEEeCCCC
Confidence 478999999999999975 35789999999999987 799999999998
No 44
>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N
Probab=98.98 E-value=9.2e-10 Score=83.55 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=46.2
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHh----CCceEEEEeccCCceEE-eeCCCC
Q psy17408 25 VGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKN----NPFVLSGNLHGGAIVAS-YPFDDS 95 (96)
Q Consensus 25 ~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~----~~~~l~is~Hsg~~~i~-yPy~~s 95 (96)
..|.++.|+||||||.. +.+.+.||+.++.++++. .+++++++|||.+++.+ |||+++
T Consensus 104 ~~R~~~~G~DLNR~w~~-------------p~~~~~P~i~~~k~li~~l~~~~~i~~ylDlHghs~~~~~F~yG~~ 166 (261)
T cd06907 104 NYRCSLAGRDLNRNYKT-------------PLKDSFPTIWYTKNMVKRLLEEREVILYCDLHGHSRKNNVFMYGCE 166 (261)
T ss_pred CCcCCCcCCCCCcCCCC-------------CCcccCchHHHHHHHHHHHHhcCCeEEEEEeccchhccceEeecCC
Confidence 45889999999999975 236688997666665444 46999999999999955 999864
No 45
>cd06242 Peptidase_M14-like_1_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=98.98 E-value=7.4e-10 Score=83.87 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=43.6
Q ss_pred cCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEeccCCce
Q psy17408 24 FVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAIV 87 (96)
Q Consensus 24 ~~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hsg~~~ 87 (96)
+.+|.|++|+||||||. ++++|||+++++++.+..+.+++++|++++.
T Consensus 109 ~~~R~na~g~DlNRD~~----------------~~~~pEtra~~~~~~~~~P~v~iD~He~~~~ 156 (268)
T cd06242 109 YFQRTLATGYDPNRDHT----------------KLARQQTRDIKEAFSKFNPHIAIDAHEYGAF 156 (268)
T ss_pred hccccCCcCcccCCCCC----------------cccCHHHHHHHHHHHHhCCcEEEEeccCCcc
Confidence 45699999999999994 4689999999999999999999999999886
No 46
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=98.48 E-value=3.6e-07 Score=70.06 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=39.1
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHH---HHHHHHHHHhC--CceEEEEeccCCce
Q psy17408 25 VGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPE---TLAMISFIKNN--PFVLSGNLHGGAIV 87 (96)
Q Consensus 25 ~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpE---t~Av~~~~~~~--~~~l~is~Hsg~~~ 87 (96)
..|.|..|+||||||.. +.|...|| +++|++++.+. ++++++++||++..
T Consensus 110 n~Rc~~~G~DLNR~w~~-------------p~~~~~P~i~~~k~l~~~l~~~~~~~~~yiDlHghs~~ 164 (278)
T cd06906 110 NHRCSLSGEDLNRQWQS-------------PNPELHPTIYHTKGLLQYLAAIKRSPLVYCDYHGHSRK 164 (278)
T ss_pred ccccCCCCCCCCCCCCC-------------CCcccChHHHHHHHHHHHHHHhCCCceEEEeecccccc
Confidence 46778899999999863 35556676 67777888753 58899999999876
No 47
>cd06233 Peptidase_M14-like_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=97.49 E-value=0.00018 Score=55.36 Aligned_cols=20 Identities=55% Similarity=0.702 Sum_probs=17.1
Q ss_pred CccCCCCCCCCcCCCCCCCC
Q psy17408 22 ARFVGRNNANGVDLNRNFPD 41 (96)
Q Consensus 22 ~w~~~R~N~~GVDLNRNFp~ 41 (96)
.....|.|.+||||||||-+
T Consensus 101 f~~~~R~nedgvDLNRnf~d 120 (283)
T cd06233 101 FAHLRRVNENNVDLNRNFLD 120 (283)
T ss_pred HhhcccCCCCCCChhhcccc
Confidence 34688899999999999965
No 48
>cd06240 Peptidase_M14-like_1_3 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=97.43 E-value=0.00029 Score=53.89 Aligned_cols=43 Identities=16% Similarity=-0.002 Sum_probs=38.0
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEeccCC
Q psy17408 27 RNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGA 85 (96)
Q Consensus 27 R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hsg~ 85 (96)
+.+..|+||||+|= ..+.||++++++++.+..+.+.+++|..|
T Consensus 137 ~~~y~g~DlNRD~~----------------~~~~~et~~~~~~~~~w~P~v~~D~He~g 179 (273)
T cd06240 137 YGKYVGHDNNRDGY----------------MNQQETTNNSRKLFLEWHPQIMYDLHQSG 179 (273)
T ss_pred cCccCCcCCCcccc----------------hhcCHHHHHHHHHHHhcCCcEEEEcccCC
Confidence 56778999999982 36899999999999999999999999774
No 49
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=97.43 E-value=0.00039 Score=54.71 Aligned_cols=34 Identities=15% Similarity=-0.037 Sum_probs=22.9
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhC----CceEEEEeccCCc
Q psy17408 51 EQPLNVKKLEPETLAMISFIKNN----PFVLSGNLHGGAI 86 (96)
Q Consensus 51 ~y~G~~p~SEpEt~Av~~~~~~~----~~~l~is~Hsg~~ 86 (96)
+|.|..| +.-++.|..+++++ .-++.|.+|+|..
T Consensus 183 fYGG~~p--~wS~~~L~~il~~~~~~~~~v~~iDlHTGlG 220 (341)
T PF10994_consen 183 FYGGTEP--EWSNRTLREILREHLAGAERVAWIDLHTGLG 220 (341)
T ss_pred ccCCCCc--cHHHHHHHHHHHHHhhcCcEEEEEEeCCCCC
Confidence 5777443 33455566666654 5788999999876
No 50
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.90 E-value=0.0013 Score=49.83 Aligned_cols=49 Identities=27% Similarity=0.374 Sum_probs=30.7
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHh---CCceEEEEeccCC-ceEEeeC
Q psy17408 29 NANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKN---NPFVLSGNLHGGA-IVASYPF 92 (96)
Q Consensus 29 N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~---~~~~l~is~Hsg~-~~i~yPy 92 (96)
...|.||||+||-... .| +++.++.++.+ ...+..|+||+++ ...+.|+
T Consensus 73 ~~d~~dlNR~fpg~~~-------------g~--~~~r~a~~~~~~~~~~~d~~iDlHs~~~~~~~~p~ 125 (288)
T cd06254 73 PEDGKNLNRVFPGDKD-------------GT--LTERIAYFLTEEVIDKADFLIDLHSGDGNEQLRPY 125 (288)
T ss_pred CCCCCchhhcCCCCCC-------------CC--HHHHHHHHHHHHHHhhCcEEEECCCCCCccccCce
Confidence 4589999999985321 13 34444444433 2578899999986 3344444
No 51
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.71 E-value=0.0017 Score=49.27 Aligned_cols=49 Identities=27% Similarity=0.233 Sum_probs=30.4
Q ss_pred cCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHH--HHHHHHHHhCCceEEEEeccCCc
Q psy17408 24 FVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPET--LAMISFIKNNPFVLSGNLHGGAI 86 (96)
Q Consensus 24 ~~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt--~Av~~~~~~~~~~l~is~Hsg~~ 86 (96)
...|.+..|.||||+||-.. ..+..|. .++.+.+.. ..++.|+||+++.
T Consensus 69 ~~~R~~~d~~dlNR~fpg~~-------------~g~~~~~~a~~i~~~~~~-~~d~~iDlHs~~~ 119 (287)
T cd06251 69 NQSRYLPDRRDLNRSFPGSK-------------NGSLASRIAHLFFTEILS-HADYGIDLHTGAI 119 (287)
T ss_pred hccccCCCccCHhhcCCCCC-------------CCCHHHHHHHHHHHHHHh-hCCEEEEcCCCCC
Confidence 45677778999999998421 1122222 233332322 3889999999973
No 52
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=96.56 E-value=0.0049 Score=48.50 Aligned_cols=27 Identities=7% Similarity=-0.057 Sum_probs=18.3
Q ss_pred HHHHHHh--CCceEEEEeccCCceEEeeC
Q psy17408 66 MISFIKN--NPFVLSGNLHGGAIVASYPF 92 (96)
Q Consensus 66 v~~~~~~--~~~~l~is~Hsg~~~i~yPy 92 (96)
+...+.+ ...++.|.||+++..+-|.|
T Consensus 149 la~~l~~~~~~aD~~IDLHsg~~~~~~vy 177 (359)
T cd06250 149 LRLTLQRLALDADIVLDLHCDDEAVLHLY 177 (359)
T ss_pred HHHHHHHHhhcCCEEEECCCCCccCceEE
Confidence 5554443 36889999999988654433
No 53
>cd06230 M14_ASTE_ASPA_like The Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily belongs to the M14 family of metallocarboxypeptidases (MCPs), and includes ASTE, which catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) which cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.51 E-value=0.0046 Score=45.89 Aligned_cols=50 Identities=20% Similarity=0.083 Sum_probs=32.2
Q ss_pred cCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEeccCCc
Q psy17408 24 FVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAI 86 (96)
Q Consensus 24 ~~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hsg~~ 86 (96)
...|.+. +||||+||-.-. ....++.+.++|.+.+... ..+.|.+|++..
T Consensus 48 ~~~R~~~--~DLNR~fpg~~~----------~~~~~~~~a~~l~~~i~~~-~d~~iDlH~~~~ 97 (252)
T cd06230 48 AGQRYLD--RDLNRIFPGDPD----------SGTYEDRLAAELCPELEGL-ADAVLDLHSTSS 97 (252)
T ss_pred hCCCCCC--cCCCCCCCCCCC----------CCCHHHHHHHHHHHHHhhh-ccEEEECCCCCC
Confidence 4566666 999999984211 0122444455565555442 789999999985
No 54
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.97 E-value=0.016 Score=44.21 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=32.2
Q ss_pred cCCCCCC-CCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEeccCCce
Q psy17408 24 FVGRNNA-NGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAIV 87 (96)
Q Consensus 24 ~~~R~N~-~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hsg~~~ 87 (96)
...|.++ .++||||.||-. . ....+|..+.++.+-+. ....+.|.||+++.-
T Consensus 73 ~~~R~~p~d~~dlNR~fpg~--~---------~g~~~~r~A~~~~~~~~-~~~d~~iDlHs~~~~ 125 (293)
T cd06255 73 ARTRMSPFDELDLNRTFPGN--P---------NGMVTQQMAHALFEEVR-GVADYLVDLHTMTTI 125 (293)
T ss_pred hhcccCCCCCCCcccCCCCC--C---------CCCHHHHHHHHHHHHHH-hcCCEEEECCCCCCC
Confidence 4567776 899999999841 0 01223333444433332 256899999999764
No 55
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.44 E-value=0.026 Score=43.49 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=30.7
Q ss_pred cCCCCCC-CCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHh---CCceEEEEeccCCc
Q psy17408 24 FVGRNNA-NGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKN---NPFVLSGNLHGGAI 86 (96)
Q Consensus 24 ~~~R~N~-~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~---~~~~l~is~Hsg~~ 86 (96)
...|.++ .|.||||.||-.. ..+. ++.+..++.+ ...++.|.||+++.
T Consensus 83 ~~~R~~p~D~~DLNR~Fpg~~--------------~gs~-~~riA~~i~~~l~~~aD~~iDLHt~~~ 134 (316)
T cd06252 83 AGTRTSPIDGGNLNRVFPGDP--------------DGTV-TEMIAHYLTTELLPRADYVIDLHSGGR 134 (316)
T ss_pred hccccCCCCCCcHHhhCCCCC--------------CCCH-HHHHHHHHHHhhhhcCcEEEEccCCCC
Confidence 4567665 6899999998521 1222 3444444443 26789999999854
No 56
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=95.27 E-value=0.03 Score=42.43 Aligned_cols=26 Identities=27% Similarity=0.137 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCceEEEEeccCCc
Q psy17408 61 PETLAMISFIKNNPFVLSGNLHGGAI 86 (96)
Q Consensus 61 pEt~Av~~~~~~~~~~l~is~Hsg~~ 86 (96)
.|++++++++.+..+.+-|++|++-.
T Consensus 120 ~Es~~~~~~~~~~~~~~hiDlHeyp~ 145 (240)
T cd06232 120 GEREARHQALAKSGAQLHVNLHGYPA 145 (240)
T ss_pred hHHHHHHHHHHhhCCcEEEECCCCCc
Confidence 89999999999999999999998753
No 57
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=95.16 E-value=0.049 Score=42.42 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=32.7
Q ss_pred cCCCCCC-CCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHh---CCceEEEEeccCCce
Q psy17408 24 FVGRNNA-NGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKN---NPFVLSGNLHGGAIV 87 (96)
Q Consensus 24 ~~~R~N~-~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~---~~~~l~is~Hsg~~~ 87 (96)
...|.+. .|.||||.||- .+..+. |+.|+..+.+ ...++.|.||+++..
T Consensus 96 ~~~r~~p~d~~nlNR~fPG--------------~~~gs~-~~riA~~l~~~l~~~aD~~iDlHs~~~~ 148 (325)
T TIGR02994 96 AGTRTSPIDRGNLNRSFPG--------------RPDGTV-TEKIADYFQRHLLPLADIVLDFHSGGKT 148 (325)
T ss_pred hhCCCCCCCCCccCCCCCC--------------CCCCCH-HHHHHHHHHHhHHhhCCEEEECCCCCcc
Confidence 4556554 79999999984 122222 5556555543 258899999999873
No 58
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=94.93 E-value=0.016 Score=43.26 Aligned_cols=58 Identities=26% Similarity=0.203 Sum_probs=36.7
Q ss_pred cCCCCCC-CCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhC---CceEEEEeccCCce
Q psy17408 24 FVGRNNA-NGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNN---PFVLSGNLHGGAIV 87 (96)
Q Consensus 24 ~~~R~N~-~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~---~~~l~is~Hsg~~~ 87 (96)
...|... .|.||||.||-.-... ....+....+|+.+...+.+. +.++.|.||+++.-
T Consensus 51 ~~~R~~~~d~~dLNR~Fpg~~~~~------~~~~~~~~~~~~~ia~~l~~~~~~~aD~~iDLHs~~~~ 112 (292)
T PF04952_consen 51 QGTRFVPIDGRDLNRCFPGDALGS------SLQEDYEATETERIAHALFEEILPDADYVIDLHSGSSS 112 (292)
T ss_dssp HTSSSSTTTSSBGGGSTTHHHHCH------CTTHHHHHHHHHHHHHHHHHTTCCCGSEEEEEEEESST
T ss_pred hccccCCCCCCCHHHhCCCCcccc------ccccccchhHHHHHHHHHhhhhhccceEEEEeccCCCC
Confidence 3456665 8999999998421110 000111225677788877753 58999999998753
No 59
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.80 E-value=0.063 Score=41.14 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=29.3
Q ss_pred cCCCCCC-CCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHh--CCceEEEEeccCCc
Q psy17408 24 FVGRNNA-NGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKN--NPFVLSGNLHGGAI 86 (96)
Q Consensus 24 ~~~R~N~-~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~--~~~~l~is~Hsg~~ 86 (96)
...|.++ .|.||||.||-.- ..+ .++.++..+.+ ...++.|.||+++.
T Consensus 74 ~~~R~~p~d~~dlNR~Fpg~~--------------~g~-~~~riA~~~~~~~~~~d~~iDLHsg~~ 124 (298)
T cd06253 74 LGTRFWPTDNSDINRMFPGDP--------------QGE-TTQRIAAAVFEDVKGADYCIDLHSSNI 124 (298)
T ss_pred HhhCcCCCCCCcccccCCCCC--------------CCc-HHHHHHHHHHHHhcCCCEEEEccCCCc
Confidence 3566554 6999999998411 111 23334333333 35789999999854
No 60
>cd06909 M14_ASPA Aspartoacylase (ASPA) belongs to the Succinylglutamate desuccinylase/aspartoacylase subfamily of the M14 family of metallocarboxypeptidases. ASPA (also known as aminoacylase 2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.15 E-value=0.31 Score=37.35 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=26.7
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhC---CceEEEEeccC
Q psy17408 32 GVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNN---PFVLSGNLHGG 84 (96)
Q Consensus 32 GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~---~~~l~is~Hsg 84 (96)
..||||-||-..... ++.....+...+.+.+.+... +..+.|.||++
T Consensus 55 d~DLNR~Fpg~~~~~------~~~~~~e~~~A~~l~~~l~~~~~~~~D~~iDLHst 104 (282)
T cd06909 55 DTDLNRCFTLENLSN------SELLPYEVKRAKELNQKLGPKGNSPCDFVIDLHNT 104 (282)
T ss_pred CCCCCCCCCCCccCC------CCCCCHHHHHHHHHHHHHhhccCCCceEEEECCCC
Confidence 589999998643221 011111223344454544432 47899999995
No 61
>PRK02259 aspartoacylase; Provisional
Probab=92.86 E-value=0.33 Score=36.96 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=25.5
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHH---HHHHHHHh---CCceEEEEeccCC
Q psy17408 33 VDLNRNFPDQFDSSSERREQPLNVKKLEPETL---AMISFIKN---NPFVLSGNLHGGA 85 (96)
Q Consensus 33 VDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~---Av~~~~~~---~~~~l~is~Hsg~ 85 (96)
.||||.||-..... ...+..|.+ .+.+.+.. .+.++.|.||+++
T Consensus 58 ~DLNR~Fpg~~~~~---------~~~~~~e~~~A~~l~~~~~~~~~~~~D~~iDLHttt 107 (288)
T PRK02259 58 RDLNRSFRLDLLQN---------PDLSGYEQLRAKELVQQLGPKGNSPCDFIIDLHSTT 107 (288)
T ss_pred ccCCCCCCCccccC---------CCCCCHHHHHHHHHHHHHhhccCccCcEEEECCCCC
Confidence 79999998532210 111334443 44444421 2578999999964
No 62
>COG2866 Predicted carboxypeptidase [Amino acid transport and metabolism]
Probab=92.77 E-value=0.069 Score=42.50 Aligned_cols=16 Identities=75% Similarity=0.956 Sum_probs=14.5
Q ss_pred CCCCCCCcCCCCCCCC
Q psy17408 26 GRNNANGVDLNRNFPD 41 (96)
Q Consensus 26 ~R~N~~GVDLNRNFp~ 41 (96)
.|.|++|+||||+|+.
T Consensus 207 lr~na~~~dLnr~~~~ 222 (374)
T COG2866 207 LRTNANGVDLNRNFIA 222 (374)
T ss_pred cccccCccchhhhccC
Confidence 4999999999999965
No 63
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.68 E-value=0.26 Score=37.18 Aligned_cols=50 Identities=16% Similarity=-0.017 Sum_probs=28.4
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHh-CCceEEEEeccCCceEEeeC
Q psy17408 32 GVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKN-NPFVLSGNLHGGAIVASYPF 92 (96)
Q Consensus 32 GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~-~~~~l~is~Hsg~~~i~yPy 92 (96)
+.||||.||-.+.. |+. ...|.+.-..+..- ...++.|.||+++.. .+|+
T Consensus 60 ~~dLNR~Fpg~~~~--------g~~--~~~e~~~A~~l~~~i~~aD~~iDLHt~~~~-~~p~ 110 (272)
T cd06910 60 DEDMNRVWSPDVLD--------GPR--DSIELRRARELRPVIDTADYLLDLHSMQWP-SPPL 110 (272)
T ss_pred CCCcCCCCCCcccC--------CCc--ccHHHHHHHHHHHHHhhCCEEEECCCCCCC-CCCE
Confidence 68999999853321 111 13454443232211 146689999999873 4554
No 64
>cd06256 M14_ASTE_ASPA_like_6 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.60 E-value=0.24 Score=38.75 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=31.5
Q ss_pred cCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCceEEEEeccC
Q psy17408 24 FVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGG 84 (96)
Q Consensus 24 ~~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~~~~l~is~Hsg 84 (96)
...|....|.||||-||-... ...+...+.|.+.+.+....+.|.+|++
T Consensus 82 ~~~R~~~d~~DLNR~Fpg~~~------------s~e~r~A~~l~~~l~~~~~d~~IDLHst 130 (327)
T cd06256 82 AGVRRLDGQPDYNRCWPGPYD------------DPEGRLAEEVLELLADERPEASIDIHNN 130 (327)
T ss_pred hCcccCCCCCCccCCCCCCCC------------CHHHHHHHHHHHHHHhcCCcEEEECCCC
Confidence 355666678999999984111 1233335556666655556789999976
No 65
>KOG3641|consensus
Probab=92.35 E-value=0.15 Score=43.19 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=38.5
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhC------CceEEEEeccCCceEE
Q psy17408 26 GRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNN------PFVLSGNLHGGAIVAS 89 (96)
Q Consensus 26 ~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~------~~~l~is~Hsg~~~i~ 89 (96)
-|-.-.|.||||-|-. +.+.+.|+..++.+.++.. ...+++.+|+-++.++
T Consensus 488 yRCSL~G~DLNR~w~t-------------ps~~shPsi~~~k~li~~l~~~~~~~p~~Y~DlHgHSqK~n 544 (650)
T KOG3641|consen 488 YRCSLMGLDLNRMWST-------------PSPASHPSIYAVKQLIQQLSNVPHSRPLGYVDLHGHSQKVN 544 (650)
T ss_pred ceeccccchhhhhcCC-------------CCcccchhHHhHHHHHhhhhcccccCceEeecccccccccc
Confidence 3556689999999865 4556888877777666652 3788999999999864
No 66
>cd03855 M14_ASTE Peptidase M14 Succinylglutamate desuccinylase (ASTE, also known as N-succinyl-L-glutamate amidohydrolase, N2-succinylglutamate desuccinylase, and SGDS; EC 3.5.1.96) belongs to the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily of the M14 family of metallocarboxypeptidases. This group includes succinylglutamate desuccinylase that catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway. It hydrolyzes N-succinyl-L-glutamate to succinate and L-glutamate.
Probab=90.74 E-value=0.66 Score=35.98 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=29.7
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcHH-HHH----HHHHHHhC---CceEEEEeccC---C---ceEEeeCC
Q psy17408 33 VDLNRNFPDQFDSSSERREQPLNVKKLEPE-TLA----MISFIKNN---PFVLSGNLHGG---A---IVASYPFD 93 (96)
Q Consensus 33 VDLNRNFp~~w~~~~~~~~y~G~~p~SEpE-t~A----v~~~~~~~---~~~l~is~Hsg---~---~~i~yPy~ 93 (96)
.||||-||-.... ....+|.+ .+. +..++... .....+.||+. + .++++|+.
T Consensus 99 ~DLNR~FpG~~~~---------~~~~~E~~rA~~L~~~~~~~~~~~~~~~~d~~iDLHta~~~s~~~~f~~~p~~ 164 (322)
T cd03855 99 ENLNRLFSGRHQK---------DEPGPERARAAELEQAVADFFAAGPSGAERWHYDLHTAIRGSKHEKFAVYPFL 164 (322)
T ss_pred CCccCCCCCCccc---------CCCChHHHHHHHHHHHHHHHHhhcccccCcEEEEccCCCCCccCCceeecccc
Confidence 5999999843221 01123332 122 33344443 57889999995 4 56777764
No 67
>COG3608 Predicted deacylase [General function prediction only]
Probab=87.50 E-value=1 Score=35.60 Aligned_cols=51 Identities=24% Similarity=0.241 Sum_probs=32.7
Q ss_pred cCCCCCC-CCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhC---CceEEEEeccCCceEE
Q psy17408 24 FVGRNNA-NGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNN---PFVLSGNLHGGAIVAS 89 (96)
Q Consensus 24 ~~~R~N~-~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt~Av~~~~~~~---~~~l~is~Hsg~~~i~ 89 (96)
..+|.+. .+.++||+||- . .-.| =|.++.++++++ .-++.+.||+++.-..
T Consensus 97 ~~~R~~p~d~~N~NR~fPg---~----------~dgs--~t~ria~~l~r~L~~~aD~VlDlHsg~~~~~ 151 (331)
T COG3608 97 AQGRFSPGDDTNLNRAFPG---R----------PDGS--ATERIADRLKRLLLPLADIVLDLHSGGEGLD 151 (331)
T ss_pred hhcccCCCCCCcccccCCC---C----------CCCC--HHHHHHHHHHHhhhcccCEEEEccCCCCccc
Confidence 3556555 78999999992 0 0012 245556666443 3678999999987643
No 68
>PRK05324 succinylglutamate desuccinylase; Provisional
Probab=82.67 E-value=4.3 Score=31.70 Aligned_cols=54 Identities=22% Similarity=0.198 Sum_probs=29.5
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcHHH---HHHHH----HHHh--CCceEEEEeccC---C---ceEE
Q psy17408 25 VGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPET---LAMIS----FIKN--NPFVLSGNLHGG---A---IVAS 89 (96)
Q Consensus 25 ~~R~N~~GVDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt---~Av~~----~~~~--~~~~l~is~Hsg---~---~~i~ 89 (96)
..|.. ..||||-||-.+.+. + +.+|. +.|.+ ++.. ...++.+.||+. + ..++
T Consensus 98 ~~R~v--d~DLNR~FpG~~~~~----------~-~~~E~~rA~~L~~~i~~~~~~~~~~~D~~iDLHta~~gs~~~~f~~ 164 (329)
T PRK05324 98 GKRYL--DEDLNRLFGGRHQQF----------P-GSDEARRAAELEQAVEDFFAAGAERVRWHYDLHTAIRGSKHEQFAV 164 (329)
T ss_pred CcccC--CCCcccCCCCCcCCC----------C-CcHHHHHHHHHHHHHHHHhcccCccceEEEECCCCCccccCCceee
Confidence 44443 469999999644321 1 11144 33333 3322 136789999984 3 4456
Q ss_pred ee
Q psy17408 90 YP 91 (96)
Q Consensus 90 yP 91 (96)
+|
T Consensus 165 ~p 166 (329)
T PRK05324 165 LP 166 (329)
T ss_pred ee
Confidence 66
No 69
>PRK14341 lipoate-protein ligase B; Provisional
Probab=65.42 E-value=4.3 Score=30.17 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=13.0
Q ss_pred EEEeccCCceEEee
Q psy17408 78 SGNLHGGAIVASYP 91 (96)
Q Consensus 78 ~is~Hsg~~~i~yP 91 (96)
-+++|+-||++.||
T Consensus 74 ~iTyHGPGQlV~Yp 87 (213)
T PRK14341 74 QYTYHGPGQRVAYV 87 (213)
T ss_pred ceeEECCCeEEEEE
Confidence 47999999999999
No 70
>TIGR03242 arg_catab_astE succinylglutamate desuccinylase. Members of this protein family are succinylglutamate desuccinylase, the fifth and final enzyme of the arginine succinyltransferase (AST) pathway for arginine catabolism. This model excludes the related protein aspartoacylase.
Probab=63.28 E-value=17 Score=28.10 Aligned_cols=10 Identities=20% Similarity=0.082 Sum_probs=8.6
Q ss_pred ceEEEEeccC
Q psy17408 75 FVLSGNLHGG 84 (96)
Q Consensus 75 ~~l~is~Hsg 84 (96)
.++.|.||+.
T Consensus 139 ~D~~IDLHt~ 148 (319)
T TIGR03242 139 ARWHYDLHTA 148 (319)
T ss_pred ceEEEECCCC
Confidence 5889999985
No 71
>PRK14347 lipoate-protein ligase B; Provisional
Probab=63.15 E-value=5.1 Score=29.73 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=13.0
Q ss_pred EEEeccCCceEEee
Q psy17408 78 SGNLHGGAIVASYP 91 (96)
Q Consensus 78 ~is~Hsg~~~i~yP 91 (96)
-+++|+-||++.||
T Consensus 72 ~vTyHGPGQlV~Yp 85 (209)
T PRK14347 72 KFTFHGPGQRVIYP 85 (209)
T ss_pred ceEEeCCCcEEEEE
Confidence 47999999999999
No 72
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=63.11 E-value=5.2 Score=29.06 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=13.0
Q ss_pred EEEeccCCceEEee
Q psy17408 78 SGNLHGGAIVASYP 91 (96)
Q Consensus 78 ~is~Hsg~~~i~yP 91 (96)
-+++|+-||++.||
T Consensus 54 ~iTyHGPGQLV~Yp 67 (184)
T TIGR00214 54 QVTYHGPGQQVMYV 67 (184)
T ss_pred eeEEECCCeEEEEE
Confidence 47899999999999
No 73
>PRK14342 lipoate-protein ligase B; Provisional
Probab=61.25 E-value=5.8 Score=29.48 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=12.9
Q ss_pred EEEeccCCceEEee
Q psy17408 78 SGNLHGGAIVASYP 91 (96)
Q Consensus 78 ~is~Hsg~~~i~yP 91 (96)
-+++|+-||++.||
T Consensus 74 ~iTyHGPGQLV~Yp 87 (213)
T PRK14342 74 QVTYHGPGQLVMYV 87 (213)
T ss_pred ceEEECCCeEEEEE
Confidence 47999999999999
No 74
>PRK14348 lipoate-protein ligase B; Provisional
Probab=60.54 E-value=6 Score=29.55 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=12.9
Q ss_pred EEEeccCCceEEee
Q psy17408 78 SGNLHGGAIVASYP 91 (96)
Q Consensus 78 ~is~Hsg~~~i~yP 91 (96)
-+++|+-||++.||
T Consensus 83 ~iTyHGPGQlV~Yp 96 (221)
T PRK14348 83 DITYHGPGQLVCYP 96 (221)
T ss_pred ceEEECCCeEEEEE
Confidence 47999999999999
No 75
>PRK14345 lipoate-protein ligase B; Provisional
Probab=59.04 E-value=6.5 Score=29.60 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=12.9
Q ss_pred EEEeccCCceEEee
Q psy17408 78 SGNLHGGAIVASYP 91 (96)
Q Consensus 78 ~is~Hsg~~~i~yP 91 (96)
-+++|+-||++.||
T Consensus 80 ~iTyHGPGQLV~Yp 93 (234)
T PRK14345 80 KITWHGPGQLVGYP 93 (234)
T ss_pred ceeEeCCCeEEEEE
Confidence 47999999999999
No 76
>PRK14344 lipoate-protein ligase B; Provisional
Probab=58.74 E-value=6.7 Score=29.40 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=13.0
Q ss_pred EEEeccCCceEEee
Q psy17408 78 SGNLHGGAIVASYP 91 (96)
Q Consensus 78 ~is~Hsg~~~i~yP 91 (96)
-+++|+-||++.||
T Consensus 92 ~iTyHGPGQLV~Yp 105 (223)
T PRK14344 92 EVTHHMPGQLVTYL 105 (223)
T ss_pred eeeEECCCcEEEEE
Confidence 47999999999999
No 77
>PRK14343 lipoate-protein ligase B; Provisional
Probab=58.25 E-value=6.9 Score=29.60 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=13.0
Q ss_pred EEEeccCCceEEee
Q psy17408 78 SGNLHGGAIVASYP 91 (96)
Q Consensus 78 ~is~Hsg~~~i~yP 91 (96)
-+++|+-||++.||
T Consensus 84 ~iTyHGPGQLV~Yp 97 (235)
T PRK14343 84 QITYHGPGQVVAYL 97 (235)
T ss_pred ceeEeCCCeEEEEE
Confidence 47999999999999
No 78
>PRK14346 lipoate-protein ligase B; Provisional
Probab=55.84 E-value=7.9 Score=29.19 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=12.9
Q ss_pred EEEeccCCceEEee
Q psy17408 78 SGNLHGGAIVASYP 91 (96)
Q Consensus 78 ~is~Hsg~~~i~yP 91 (96)
-+++|+-||+|.||
T Consensus 71 ~iTyHGPGQlV~Yp 84 (230)
T PRK14346 71 QVTYHGPGQVVAYP 84 (230)
T ss_pred ceeEECCCeEEEEE
Confidence 47999999999999
No 79
>PRK14349 lipoate-protein ligase B; Provisional
Probab=54.08 E-value=9.1 Score=28.69 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=12.9
Q ss_pred EEEeccCCceEEee
Q psy17408 78 SGNLHGGAIVASYP 91 (96)
Q Consensus 78 ~is~Hsg~~~i~yP 91 (96)
.+++|+-||++.||
T Consensus 69 ~iTyHGPGQLV~Yp 82 (220)
T PRK14349 69 QVTYHGPGQVLAYT 82 (220)
T ss_pred ceEEeCCCcEEEEE
Confidence 47999999999999
No 80
>PF01666 DX: DX module; InterPro: IPR002593 This domain has no known function. It is found in several Caenorhabditis elegans proteins. The domain contains 6 conserved cysteines that probably form three disulphide bridges.
Probab=49.92 E-value=9.5 Score=23.92 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=16.7
Q ss_pred CcccCCCCceeeecCCccC
Q psy17408 2 FKYCDCKSNWLPYEGSCNS 20 (96)
Q Consensus 2 ~~~~~~~~~~~a~~~~~~~ 20 (96)
|-|||++...++..|+...
T Consensus 20 ~~fCdp~t~ki~imG~~~~ 38 (76)
T PF01666_consen 20 FAFCDPETGKIVIMGEENF 38 (76)
T ss_pred eEEECCcCCeEEEEeeecc
Confidence 6799999999999997664
No 81
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=45.67 E-value=21 Score=20.61 Aligned_cols=17 Identities=6% Similarity=0.178 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHhC
Q psy17408 57 KKLEPETLAMISFIKNN 73 (96)
Q Consensus 57 p~SEpEt~Av~~~~~~~ 73 (96)
..++.|.++|+.||++.
T Consensus 74 ~ls~~e~~~l~ayl~sl 90 (91)
T PF00034_consen 74 ILSDEEIADLAAYLRSL 90 (91)
T ss_dssp TSSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 48999999999999875
No 82
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=40.64 E-value=20 Score=27.01 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=12.8
Q ss_pred EEEeccCCceEEee
Q psy17408 78 SGNLHGGAIVASYP 91 (96)
Q Consensus 78 ~is~Hsg~~~i~yP 91 (96)
-+++|+-||++.||
T Consensus 80 qvTyHGPGQ~V~Y~ 93 (221)
T COG0321 80 QVTYHGPGQLVAYP 93 (221)
T ss_pred eeEEeCCCcEEEEE
Confidence 37999999999998
No 83
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=30.87 E-value=41 Score=20.31 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=12.7
Q ss_pred CCCCCCcHHHHHHHHHHHhC
Q psy17408 54 LNVKKLEPETLAMISFIKNN 73 (96)
Q Consensus 54 G~~p~SEpEt~Av~~~~~~~ 73 (96)
|-.||++.|=++|++|+..+
T Consensus 1 gR~~fT~edD~~l~~~v~~~ 20 (65)
T PF08914_consen 1 GRTPFTEEDDAALLDYVKEN 20 (65)
T ss_dssp ------HHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 34689999999999999764
No 84
>COG3931 Predicted N-formylglutamate amidohydrolase [Amino acid transport and metabolism]
Probab=29.06 E-value=1.5e+02 Score=22.84 Aligned_cols=57 Identities=23% Similarity=-0.001 Sum_probs=34.6
Q ss_pred CcCCCCCCCCCCC--CCCCCCCCCCCCCCCcHHHHHHHHHH------------Hh----CCceEEEEeccCCceE
Q psy17408 32 GVDLNRNFPDQFD--SSSERREQPLNVKKLEPETLAMISFI------------KN----NPFVLSGNLHGGAIVA 88 (96)
Q Consensus 32 GVDLNRNFp~~w~--~~~~~~~y~G~~p~SEpEt~Av~~~~------------~~----~~~~l~is~Hsg~~~i 88 (96)
=+|.||=+++.-- ....--.-+|..+.||.|-++-++-+ .. -+..+.+++||+..+.
T Consensus 83 liDcNRp~d~p~lip~~Se~~~VPgN~~ls~~ER~~R~~~~~~PfH~av~~~ia~r~AaG~~~~vvsvHSFTPvy 157 (263)
T COG3931 83 LIDCNRPEDAPDLIPQLSEGTVVPGNHPLSEEERRARIDRFYRPFHEAVTRIIAERAAAGRAPFVVSVHSFTPVY 157 (263)
T ss_pred EecCCCCCCcchhhhccccceeccCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCcEEEEEeccCccc
Confidence 4899998865321 11111245677888888866544332 22 1356678899998764
No 85
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [].; PDB: 2OL5_A.
Probab=28.76 E-value=65 Score=22.84 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=21.1
Q ss_pred CCCCcHHHHHHHHHHHhCCceEEEEeccCCceE
Q psy17408 56 VKKLEPETLAMISFIKNNPFVLSGNLHGGAIVA 88 (96)
Q Consensus 56 ~p~SEpEt~Av~~~~~~~~~~l~is~Hsg~~~i 88 (96)
..|.+.....+.+||++++|-..++.+.++..+
T Consensus 5 ~~f~~~d~~~l~~~i~~~pfa~Lvt~~~~~~~a 37 (169)
T PF04299_consen 5 PHFAEEDPEELRAFIRAHPFATLVTNGDGGPVA 37 (169)
T ss_dssp -------HCHHHHHHHHS-EEEEEEEETTEEEE
T ss_pred cccccCCHHHHHHHHHhCCcEEEEEcCCCCcce
Confidence 456777778889999999999999987777554
No 86
>PF01701 PSI_PsaJ: Photosystem I reaction centre subunit IX / PsaJ; InterPro: IPR002615 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. This family consists of the photosystem I reaction centre subunit IX or PsaJ from various organisms including Synechocystis sp. (strain PCC 6803), Pinus thunbergii (Green pine) and Zea mays (Maize). PsaJ (P19443 from SWISSPROT) is a small 4.4kDa, chloroplast encoded, hydrophobic subunit of the photosystem I reaction complex whose function is not yet fully understood []. PsaJ can be cross-linked to PsaF (P12356 from SWISSPROT) and has a single predicted transmembrane domain. It has a proposed role in maintaing PsaF in the correct orientation to allow for fast electron transfer from soluble donor proteins to P700+ [].; GO: 0015979 photosynthesis, 0009522 photosystem I; PDB: 2WSF_J 2WSC_J 2O01_J 2WSE_J 1JB0_J 3PCQ_J 3LW5_J.
Probab=28.07 E-value=36 Score=18.75 Aligned_cols=10 Identities=50% Similarity=1.056 Sum_probs=8.0
Q ss_pred cCCCCCCCCC
Q psy17408 33 VDLNRNFPDQ 42 (96)
Q Consensus 33 VDLNRNFp~~ 42 (96)
+.+||=||+.
T Consensus 27 IEiNRffPD~ 36 (37)
T PF01701_consen 27 IEINRFFPDL 36 (37)
T ss_dssp SSSTTTSTS-
T ss_pred HHHHHhCCCc
Confidence 7899999973
No 87
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=26.21 E-value=29 Score=19.24 Aligned_cols=11 Identities=45% Similarity=0.628 Sum_probs=8.6
Q ss_pred CCCCCcCCCCC
Q psy17408 28 NNANGVDLNRN 38 (96)
Q Consensus 28 ~N~~GVDLNRN 38 (96)
-|...|+|||-
T Consensus 7 pN~q~VELNRT 17 (39)
T PRK00753 7 PNKQPVELNRT 17 (39)
T ss_pred CCCCCceechh
Confidence 46678999984
No 88
>cd01211 GAPCenA GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA is a centrosome-associated GTPase activating protein (GAP) for rab 6. It consists of an N-terminal PTB domain and a C-terminal TBC domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=26.20 E-value=1.8e+02 Score=20.10 Aligned_cols=27 Identities=7% Similarity=0.068 Sum_probs=19.8
Q ss_pred CCCCcHHHHHHHHHHHhC----CceEEEEec
Q psy17408 56 VKKLEPETLAMISFIKNN----PFVLSGNLH 82 (96)
Q Consensus 56 ~p~SEpEt~Av~~~~~~~----~~~l~is~H 82 (96)
.|-||.|++++|.-|+.. ++.+.+++.
T Consensus 16 aP~sE~e~~r~m~~l~~~s~~~~i~Vtl~Vp 46 (125)
T cd01211 16 NPDSENEMKRLMKVLDEQSGAQTINVTLVVP 46 (125)
T ss_pred CCCCHHHHHHHHHHHHhhcccCCeEEEEEec
Confidence 678999999999988764 355555444
No 89
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=25.75 E-value=1.3e+02 Score=21.56 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=25.9
Q ss_pred CCCCCCCCcHHHHHHHHHHHhC-CceEEEEeccC
Q psy17408 52 QPLNVKKLEPETLAMISFIKNN-PFVLSGNLHGG 84 (96)
Q Consensus 52 y~G~~p~SEpEt~Av~~~~~~~-~~~l~is~Hsg 84 (96)
-.|-....+.+.+.+++++.+. .+++++.+.||
T Consensus 124 GtGl~~~l~~~~~~~i~~iN~~~~~vlAiDiPSG 157 (205)
T TIGR00197 124 GTGFKGKLREPFKTIVESINELPAPIVSVDIPSG 157 (205)
T ss_pred cCCCCCccchHHHHHHHHHHhCCCCeEEEecCCc
Confidence 3444556678899999999876 47999999988
No 90
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=25.59 E-value=26 Score=19.29 Aligned_cols=10 Identities=50% Similarity=0.720 Sum_probs=3.7
Q ss_pred CCCCcCCCCC
Q psy17408 29 NANGVDLNRN 38 (96)
Q Consensus 29 N~~GVDLNRN 38 (96)
|...|+|||-
T Consensus 6 n~q~VELNRT 15 (37)
T PF02419_consen 6 NKQPVELNRT 15 (37)
T ss_dssp T---BE--CC
T ss_pred CCCccchhHH
Confidence 5568999984
No 91
>CHL00038 psbL photosystem II protein L
Probab=24.99 E-value=31 Score=19.03 Aligned_cols=11 Identities=45% Similarity=0.688 Sum_probs=8.4
Q ss_pred CCCCCcCCCCC
Q psy17408 28 NNANGVDLNRN 38 (96)
Q Consensus 28 ~N~~GVDLNRN 38 (96)
-|...|+|||-
T Consensus 6 PN~q~VELNRT 16 (38)
T CHL00038 6 PNKQNVELNRT 16 (38)
T ss_pred CCCCccchhhh
Confidence 46678999984
No 92
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=24.79 E-value=1.1e+02 Score=22.12 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=24.9
Q ss_pred CCCCCCCcHHHHHHHHHHHhCCceEEEEec
Q psy17408 53 PLNVKKLEPETLAMISFIKNNPFVLSGNLH 82 (96)
Q Consensus 53 ~G~~p~SEpEt~Av~~~~~~~~~~l~is~H 82 (96)
.|...+|+.|.++|.+||++-.|.+.=+.+
T Consensus 62 ~~~~~~s~~e~~~Lr~Yl~~GGfl~~D~~~ 91 (207)
T PF13709_consen 62 HGDFPLSDEEIANLRRYLENGGFLLFDDRD 91 (207)
T ss_pred CCCCCCCHHHHHHHHHHHHcCCEEEEECCC
Confidence 455689999999999999998888876663
No 93
>KOG0958|consensus
Probab=24.77 E-value=61 Score=28.30 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=19.4
Q ss_pred HHHhCCceE-EEEeccCCceEEeeCCC
Q psy17408 69 FIKNNPFVL-SGNLHGGAIVASYPFDD 94 (96)
Q Consensus 69 ~~~~~~~~l-~is~Hsg~~~i~yPy~~ 94 (96)
+|++++|.. .+..+.+.-||.|||+|
T Consensus 250 ~LkqnGIpfn~ivqeagEFmITFPygy 276 (690)
T KOG0958|consen 250 VLKQNGIPFNRIVQEAGEFMITFPYGY 276 (690)
T ss_pred HHHHcCCCcceeeecCCcEEEecCccc
Confidence 444555444 47788999999999997
No 94
>PF04219 DUF413: Protein of unknown function, DUF; InterPro: IPR007335 This is a family of uncharacterised proteins.
Probab=24.06 E-value=1e+02 Score=20.15 Aligned_cols=12 Identities=42% Similarity=0.886 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCC
Q psy17408 36 NRNFPDQFDSSS 47 (96)
Q Consensus 36 NRNFp~~w~~~~ 47 (96)
|.|||-++...+
T Consensus 5 ~~~fPrGF~RsG 16 (93)
T PF04219_consen 5 DKNFPRGFSRSG 16 (93)
T ss_pred CCCCCCccccCC
Confidence 689999987654
No 95
>PF09892 DUF2119: Uncharacterized protein conserved in archaea (DUF2119); InterPro: IPR019218 This entry represents a family of hypothetical archaeal proteins of unknown function.
Probab=23.46 E-value=93 Score=23.02 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCceEEEEeccCCc
Q psy17408 61 PETLAMISFIKNNPFVLSGNLHGGAI 86 (96)
Q Consensus 61 pEt~Av~~~~~~~~~~l~is~Hsg~~ 86 (96)
++-+.|++++.+.++..|+-+|+|+.
T Consensus 63 ~~Gk~il~lIe~y~P~~Y~ElHsY~~ 88 (193)
T PF09892_consen 63 EMGKKILDLIEKYKPEFYFELHSYSK 88 (193)
T ss_pred hhhhHHHHHHHHhCCceEEEEeecCH
Confidence 34588999999999999999999975
No 96
>COG2988 Succinylglutamate desuccinylase [Amino acid transport and metabolism]
Probab=23.36 E-value=66 Score=25.54 Aligned_cols=55 Identities=24% Similarity=0.182 Sum_probs=31.8
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcHHH-HHHHHHHHhC--CceEEEEeccCC------ceEEeeCC
Q psy17408 33 VDLNRNFPDQFDSSSERREQPLNVKKLEPET-LAMISFIKNN--PFVLSGNLHGGA------IVASYPFD 93 (96)
Q Consensus 33 VDLNRNFp~~w~~~~~~~~y~G~~p~SEpEt-~Av~~~~~~~--~~~l~is~Hsg~------~~i~yPy~ 93 (96)
-||||=|...|... .+....+.-|- ++++.|...- ...+-+.+|+.- +..++|+.
T Consensus 100 qDlNR~F~gr~q~~------~~ne~~ra~eler~~q~ff~~~~~~vr~h~DLHtairgs~h~~f~~~P~~ 163 (324)
T COG2988 100 QDLNRMFGGRPQSF------SENETLRAYELERALQDFFQQGKESVRWHLDLHTAIRGSGHPQFGVLPQP 163 (324)
T ss_pred hhHHHHhCCCcccC------CCCchhhhHHHHHHHHHHHhcCCCcceEEEEhhhhhhccCCcceeeCCCC
Confidence 59999998776532 22222333332 4555555543 577888899642 34566664
No 97
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=22.87 E-value=33 Score=24.67 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=20.0
Q ss_pred CCCCCCCcHHHHHHHHHHHhCCceE
Q psy17408 53 PLNVKKLEPETLAMISFIKNNPFVL 77 (96)
Q Consensus 53 ~G~~p~SEpEt~Av~~~~~~~~~~l 77 (96)
.|...|.+-|++++.+++...+.++
T Consensus 52 ~GE~~FR~~E~~vl~~l~~~~~~Vi 76 (172)
T COG0703 52 EGEEGFRRLETEVLKELLEEDNAVI 76 (172)
T ss_pred HhHHHHHHHHHHHHHHHhhcCCeEE
Confidence 3777899999999999998875433
No 98
>KOG0640|consensus
Probab=22.70 E-value=1.8e+02 Score=23.71 Aligned_cols=38 Identities=11% Similarity=-0.024 Sum_probs=31.3
Q ss_pred CCCCcHHHHHHHHHHHhCCceEEEEeccCCceEEeeCC
Q psy17408 56 VKKLEPETLAMISFIKNNPFVLSGNLHGGAIVASYPFD 93 (96)
Q Consensus 56 ~p~SEpEt~Av~~~~~~~~~~l~is~Hsg~~~i~yPy~ 93 (96)
.-+|-|-++.-.+.++.--.+.+||||-.|..++.--+
T Consensus 199 FDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd 236 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD 236 (430)
T ss_pred EecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC
Confidence 45788888888888888889999999999998875433
No 99
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=22.20 E-value=1.1e+02 Score=20.97 Aligned_cols=29 Identities=21% Similarity=0.086 Sum_probs=19.6
Q ss_pred CcHHHHHHHHHHHhC--CceEEEEeccCCce
Q psy17408 59 LEPETLAMISFIKNN--PFVLSGNLHGGAIV 87 (96)
Q Consensus 59 SEpEt~Av~~~~~~~--~~~l~is~Hsg~~~ 87 (96)
.|.=..||..++.+. +=-|.+||||....
T Consensus 34 ~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGt 64 (127)
T PF06309_consen 34 VEVVVNAIKGHLANPNPRKPLVLSFHGWTGT 64 (127)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEeecCCCC
Confidence 333457888888774 23478889987653
No 100
>KOG0325|consensus
Probab=22.18 E-value=64 Score=24.42 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=12.7
Q ss_pred EEEeccCCceEEee
Q psy17408 78 SGNLHGGAIVASYP 91 (96)
Q Consensus 78 ~is~Hsg~~~i~yP 91 (96)
-++||+-+|++.||
T Consensus 86 ~iTfHGPgQl~~yp 99 (226)
T KOG0325|consen 86 LITFHGPGQLVAYP 99 (226)
T ss_pred eEEEeCCCceEEEE
Confidence 37899999999998
No 101
>PF14376 Haem_bd: Haem-binding domain
Probab=21.24 E-value=1.1e+02 Score=20.88 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=18.6
Q ss_pred CCCCCCCCcHHHHHHHHHHHhCC
Q psy17408 52 QPLNVKKLEPETLAMISFIKNNP 74 (96)
Q Consensus 52 y~G~~p~SEpEt~Av~~~~~~~~ 74 (96)
.+..+..|+.|.++|++|+++.+
T Consensus 115 ~H~~a~Ls~~ek~~Ll~Wi~~~R 137 (137)
T PF14376_consen 115 LHWEAKLSEEEKQALLNWIKEQR 137 (137)
T ss_pred hCCCCCCCHHHHHHHHHHHHHcC
Confidence 44557789999999999998753
No 102
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=20.78 E-value=1.1e+02 Score=20.80 Aligned_cols=22 Identities=14% Similarity=-0.008 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCceEEEEeccC
Q psy17408 63 TLAMISFIKNNPFVLSGNLHGG 84 (96)
Q Consensus 63 t~Av~~~~~~~~~~l~is~Hsg 84 (96)
.+.+.++|++.++++.++-|-.
T Consensus 78 ~~~l~~~l~~~~PD~IIsThp~ 99 (169)
T PF06925_consen 78 ARRLIRLLREFQPDLIISTHPF 99 (169)
T ss_pred HHHHHHHHhhcCCCEEEECCcc
Confidence 4678889999999999999865
No 103
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=20.44 E-value=50 Score=19.64 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=16.5
Q ss_pred CCCcHHHHHHHHHHHhCCc
Q psy17408 57 KKLEPETLAMISFIKNNPF 75 (96)
Q Consensus 57 p~SEpEt~Av~~~~~~~~~ 75 (96)
.+|+.|...|+++|..++-
T Consensus 4 ~fs~~E~~~Lv~~v~~~~~ 22 (78)
T PF13873_consen 4 NFSEEEKEILVELVEKHKD 22 (78)
T ss_pred CCCHHHHHHHHHHHHHhHH
Confidence 5799999999999998753
No 104
>PRK11027 hypothetical protein; Provisional
Probab=20.43 E-value=1.3e+02 Score=20.33 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCC
Q psy17408 36 NRNFPDQFDSSS 47 (96)
Q Consensus 36 NRNFp~~w~~~~ 47 (96)
|.|||-+|...+
T Consensus 14 ~knfPrGF~RsG 25 (112)
T PRK11027 14 DKNYPRGFSRSG 25 (112)
T ss_pred CCCCCCCcccCC
Confidence 689999887654
No 105
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=20.38 E-value=52 Score=22.85 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=23.6
Q ss_pred CCCCCCcHHHHHHHHHHHhC-CceEEEEeccCC
Q psy17408 54 LNVKKLEPETLAMISFIKNN-PFVLSGNLHGGA 85 (96)
Q Consensus 54 G~~p~SEpEt~Av~~~~~~~-~~~l~is~Hsg~ 85 (96)
|-....+++.+.+++|+.+. .+++++.+.||-
T Consensus 111 G~~~~l~~~~~~~i~~iN~~~~~viAiDiPSGl 143 (169)
T PF03853_consen 111 GFSGPLRGPIAELIDWINASRAPVIAIDIPSGL 143 (169)
T ss_dssp TGGSCGSTCHHHHHHHHHHHCSEEEEESS-TTC
T ss_pred CCCCCcCHHHHHHHHHHhccCCcEEEecCCCCc
Confidence 33445556789999999986 589999998875
Done!