RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17408
(96 letters)
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 82.7 bits (204), Expect = 2e-20
Identities = 40/83 (48%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
Query: 14 YEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNN 73
EG+C SL +VGR NA +DLNR+FPD+ + S + + + +PET A++++I +
Sbjct: 152 QEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSR---QPETAALVNWIVSK 208
Query: 74 PFVLSGNLHGGAIVASYPFDDSK 96
PFVLS N HGGA+VASYP+D+S
Sbjct: 209 PFVLSANFHGGAVVASYPYDNSL 231
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 82.4 bits (203), Expect = 3e-20
Identities = 42/92 (45%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Query: 14 YEGSCNSLARFVGRNNANGVDLNRNFPDQFDS-------SSERREQPL---NVKKLEPET 63
N VGRNNANGVDLNRNFPD PL ++EPET
Sbjct: 119 AAQGPNKPGYLVGRNNANGVDLNRNFPDLNTYIYYNEKYGGPNHHLPLPDNWKSQVEPET 178
Query: 64 LAMISFIKNNPFVLSGNLHGGAIVASYPFDDS 95
A+I ++ + FVLS NLHGGA+VA+YP+D S
Sbjct: 179 RAVIRWMHSFNFVLSANLHGGAVVANYPYDKS 210
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 73.7 bits (181), Expect = 3e-17
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 10/83 (12%)
Query: 14 YEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNN 73
+ GRNN+N DLNRNFPDQF ++ + PETLA++S++K
Sbjct: 120 KSQEGDRGGTV-GRNNSNNYDLNRNFPDQFFQVTDPPQ---------PETLAVMSWLKTY 169
Query: 74 PFVLSGNLHGGAIVASYPFDDSK 96
PFVLS NLHGG++V +YPFDD +
Sbjct: 170 PFVLSANLHGGSLVVNYPFDDDE 192
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 70.4 bits (172), Expect = 5e-16
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 9/70 (12%)
Query: 26 GRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGA 85
GR N N DLNRNFPD F+ ++ R+ PET+A++ ++K FVLS NLHGGA
Sbjct: 126 GRENYNQYDLNRNFPDAFEYNNVSRQ---------PETVAVMKWLKTETFVLSANLHGGA 176
Query: 86 IVASYPFDDS 95
+VASYPFD+
Sbjct: 177 LVASYPFDNG 186
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 58.1 bits (141), Expect = 8e-12
Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 24/103 (23%)
Query: 14 YEGSCNSLARFVGRNNAN----GVDLNRNFPDQFDSS--------SE--RREQPLNVKKL 59
R + N+ G DLNRN+ ++ SE R +
Sbjct: 120 ISSGSYKSWRKNRQPNSGSSYVGTDLNRNYGYKWGCCGGSSGSPSSETYRGRSAFS---- 175
Query: 60 EPETLAMISFIKN------NPFVLSGNLHGGAIVASYPFDDSK 96
PET AM FI + H + + YP+ +
Sbjct: 176 APETAAMRDFINSRVVGGKQQIKTLITFHTYSELILYPYSYTY 218
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 47.1 bits (111), Expect = 9e-08
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 27 RNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAI 86
R NA G DLNR + + + PE + +K + L ++HG
Sbjct: 231 RTNAAGQDLNRAWLEPS-------------AERSPEVWFVQQEMKRHGVDLFLDIHGDEE 277
Query: 87 VASYPFDDS 95
+
Sbjct: 278 IPHVFAAGC 286
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 41.7 bits (97), Expect = 6e-06
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 27 RNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAI 86
R NA G +LNR + + + PE L + I L ++HG
Sbjct: 245 RTNAAGANLNREWMEPD-------------AERSPEVLVVRDAIHAIGCDLFFDIHGDED 291
Query: 87 VASYPFDDS 95
+ S
Sbjct: 292 LPYVFAAGS 300
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase;
1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Length = 401
Score = 37.0 bits (86), Expect = 3e-04
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 14/74 (18%)
Query: 32 GVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPETLAMISFIKNN-PFVLSGNL 81
GVD NRN+ F + S+ + E E +++ FIK++ L
Sbjct: 232 GVDPNRNWDAGFGGPGASSNPCSDSYHGPSANS----EVEVKSIVDFIKSHGKVKAFIIL 287
Query: 82 HGGAIVASYPFDDS 95
H + + +P+
Sbjct: 288 HSYSQLLMFPYGYK 301
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 36.4 bits (84), Expect = 5e-04
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 12/50 (24%)
Query: 32 GVDLNRNFPDQF------DSSSE--RREQPLNVKKLEPETLAMISFIKNN 73
GVDLNRNF + S+ + EPE+ + I +
Sbjct: 250 GVDLNRNFGMNWGTASSSSVCSDTFHGRSAFS----EPESSVIRDIIAEH 295
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase
inhibitor, hydrolase/hydrolase inhibitor complex; HET:
GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Length = 303
Score = 35.8 bits (83), Expect = 8e-04
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 13/54 (24%)
Query: 32 GVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPETLAMISFIKNNPFV 76
GVD NRN+ F + S+ + E E +++ FIK++ V
Sbjct: 134 GVDPNRNWDAGFGGPGASSNPCSDSYHGPSANS----EVEVKSIVDFIKSHGKV 183
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 35.4 bits (82), Expect = 0.001
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 13/51 (25%)
Query: 32 GVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPETLAMISFIKNN 73
G D NRNF + S+ + E ET + + +
Sbjct: 136 GADGNRNFDFVWNSIGTSNSPCSDIYAGTSAFS----EVETRVVRDILHEH 182
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 35.2 bits (80), Expect = 0.001
Identities = 11/56 (19%), Positives = 15/56 (26%), Gaps = 4/56 (7%)
Query: 27 RNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLH 82
R N G + NR F + + L K L L + H
Sbjct: 119 RFNRFGENPNRGFTLENGKPTPNEHTSLEGKLL----LEHAQLLCAASRDGILTCH 170
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
structural genomics, joint CENT structural genomics,
JCSG; 2.39A {Shewanella denitrificans}
Length = 395
Score = 35.1 bits (80), Expect = 0.001
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 13/58 (22%)
Query: 27 RNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGG 84
R NA G +LNR + + PE +++ + L ++HG
Sbjct: 236 RTNAVGANLNREWQT-------------PSLERSPEVYYVVNKMHETGVDLFYDVHGD 280
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous
protein inhibitor, metalloprotease carboxypeptidase,
hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1
PDB: 4a94_A 2pcu_A*
Length = 308
Score = 32.7 bits (75), Expect = 0.009
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 13/52 (25%)
Query: 32 GVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPETLAMISFIKNNP 74
G D NRN+ F + SE + E E +++ FI+ +
Sbjct: 139 GADPNRNWNASFAGKGASDNPCSEVYHGPHANS----EVEVKSVVDFIQKHG 186
>2qvp_A Uncharacterized protein; putative metallopeptidase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 2.00A {Shewanella amazonensis}
Length = 275
Score = 31.2 bits (70), Expect = 0.031
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 27 RNNANGVDLNRNFPDQFDSSSERREQPLNVKKL 59
R N G + NR F + + + + L
Sbjct: 118 RFNELGENPNRGFFIENGKAKPGADTSAEGRIL 150
>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase,
hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A
1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P
1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A*
3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...
Length = 307
Score = 30.5 bits (69), Expect = 0.058
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 13/52 (25%)
Query: 32 GVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPETLAMISFIKNNP 74
GVD NRN+ F SE + + E E +++ F+K++
Sbjct: 140 GVDANRNWDAGFGKAGASSSPCSETYHGKYANS----EVEVKSIVDFVKDHG 187
>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa}
SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A*
2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A*
2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A*
2pjc_A* 1zli_A ...
Length = 306
Score = 30.5 bits (69), Expect = 0.058
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 13/51 (25%)
Query: 32 GVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPETLAMISFIKNN 73
G D NRNF + D E + E ET A+ FI+NN
Sbjct: 137 GTDPNRNFDAGWCTTGASTDPCDETYCGSAAES----EKETKALADFIRNN 183
>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens}
SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A
Length = 402
Score = 30.1 bits (68), Expect = 0.068
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 13/51 (25%)
Query: 32 GVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPETLAMISFIKNN 73
G D NRNF + + E + E ET A+ FI+N
Sbjct: 232 GTDPNRNFDAGWCEIGASRNPCDETYCGPAAES----EKETKALADFIRNK 278
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 30.1 bits (68), Expect = 0.079
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 13/52 (25%)
Query: 32 GVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPETLAMISFIKNNP 74
G D NRN+ F +E + P + E E ++ F+KNN
Sbjct: 235 GSDSNRNWDAGFGGAGASSSPCAETYHGKYPNS----EVEVKSITDFVKNNG 282
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.15
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 14/29 (48%)
Query: 48 ERREQPLNVKKLE-------PET---LAM 66
E++ +KKL+ ++ LA+
Sbjct: 18 EKQA----LKKLQASLKLYADDSAPALAI 42
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Rhodobacter
sphaeroides 2}
Length = 354
Score = 29.5 bits (65), Expect = 0.15
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 27 RNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISF 69
+ +G D+NR FP + + + P +
Sbjct: 106 LSPVDGRDINRCFPGDPRGTFSQMLAHFLDSVILPMADISVDM 148
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex,
glycoprotein, hydrolase, metal-binding, metalloprotease,
protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Length = 309
Score = 28.5 bits (64), Expect = 0.26
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 14/52 (26%)
Query: 32 GVDLNRNFPDQF--------DSSSE--RREQPLNVKKLEPETLAMISFIKNN 73
G DLNRNF + S SE P + EPE A+ F++ N
Sbjct: 138 GTDLNRNFASKHWCGEGASSSSCSEIYCGTYPES----EPEVKAVADFLRRN 185
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 28.2 bits (63), Expect = 0.32
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 13/51 (25%)
Query: 32 GVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPETLAMISFIKNN 73
G D NRN+ F + SE + E E +++ FI+ +
Sbjct: 235 GADPNRNWNASFAGKGASDNPCSEVYHGPHANS----EVEVKSVVDFIQKH 281
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein
S glycoprotein, hydrolase, metal-binding,
metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL
BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A*
3d67_A*
Length = 401
Score = 27.5 bits (61), Expect = 0.56
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 14/52 (26%)
Query: 32 GVDLNRNFPDQF--------DSSSE--RREQPLNVKKLEPETLAMISFIKNN 73
G DLNRNF + S SE P + EPE A+ F++ N
Sbjct: 230 GTDLNRNFASKHWCGEGASSSSCSEIYCGTYPES----EPEVKAVADFLRRN 277
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; HET: MSE; 2.00A
{Ruegeria SP}
Length = 331
Score = 27.5 bits (60), Expect = 0.59
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 20 SLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISF 69
+ + + +LNR FP + D + ++ + L P + F
Sbjct: 95 AFRASARTSPIDRGNLNRAFPGRPDGTVTQKIADYFQRTLLPMADVAVDF 144
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Shewanella
amazonensis} PDB: 3lwu_A*
Length = 368
Score = 27.2 bits (59), Expect = 0.93
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 19 NSLARFVGRNN-ANGVDLNRNFPDQFDSSSERREQPLN 55
S +GR + GV+ NR + D + ++ +
Sbjct: 83 KSGEFTLGRFDPITGVNWNREYLDHGFNIEVWYQEHSH 120
>1fvu_B Botrocetin beta chain; VON WILLBRAND factor modulator, C-type
lectin, metal- binding, loop exchanged dimer, toxin;
1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_C
1u0n_C 1u0o_B
Length = 125
Score = 26.2 bits (58), Expect = 1.3
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 6 DCKSNWLPYEGSC 18
DC +W YEG C
Sbjct: 1 DCPPDWSSYEGHC 13
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.00A
{Chromobacterium violaceum} SCOP: c.56.5.7
Length = 341
Score = 26.5 bits (58), Expect = 1.3
Identities = 13/57 (22%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 34 DLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAIVASY 90
D+NR F E E +LE + + LH AI S
Sbjct: 104 DMNRLFNGAHARHPELPESVR-AAELETLAAEFFAGARARKLHYD--LH-TAIRGSV 156
>1umr_A Convulxin alpha, CVX alpha; lectin, C-type lectin, platelet,
sugar-binding protein, activator, snake venom; 2.40A
{Crotalus durissus terrificus} SCOP: d.169.1.1 PDB:
1uos_A
Length = 135
Score = 26.3 bits (58), Expect = 1.5
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 5 CDCKSNWLPYEGSC 18
C S+W Y+ C
Sbjct: 2 LHCPSDWYYYDQHC 15
>1c3a_B Flavocetin-A: beta subunit; C-type lectin-like domains, membrane
protein; 2.50A {Trimeresurus flavoviridis} SCOP:
d.169.1.1 PDB: 1v4l_B
Length = 125
Score = 25.8 bits (57), Expect = 1.5
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 5 CDCKSNWLPYEGSC 18
C W Y+ C
Sbjct: 2 FCCPLGWSSYDEHC 15
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB:
2vrp_B
Length = 146
Score = 26.2 bits (58), Expect = 1.6
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 5 CDCKSNWLPYEGSC 18
DC S W YEG C
Sbjct: 23 ADCPSGWSSYEGHC 36
>1umr_C Convulxin beta, CVX beta; lectin, C-type lectin, platelet,
sugar-binding protein, activator, snake venom; 2.40A
{Crotalus durissus terrificus} SCOP: d.169.1.1 PDB:
1uos_B
Length = 125
Score = 25.8 bits (57), Expect = 1.7
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 5 CDCKSNWLPYEGSC 18
C S+W Y+ C
Sbjct: 2 FCCPSHWSSYDRYC 15
>1fvu_A Botrocetin alpha chain; VON WILLBRAND factor modulator, C-type
lectin, metal- binding, loop exchanged dimer, toxin;
1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_B
1u0n_B 1u0o_A
Length = 133
Score = 25.9 bits (57), Expect = 2.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 6 DCKSNWLPYEGSC 18
DC S W YEG+C
Sbjct: 1 DCPSGWSSYEGNC 13
>1yw6_A Succinylglutamate desuccinylase; alpha-beta protein., structural
genomics, PSI, protein structure initiative; 3.10A
{Escherichia coli} SCOP: c.56.5.7
Length = 335
Score = 26.2 bits (57), Expect = 2.2
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 34 DLNRNFPDQFDSSSERREQPLNVKKLEP 61
D+NR F ++ +E E ++LE
Sbjct: 106 DMNRMFGGRWQLFAESGETCR-ARELEQ 132
>1sb2_A Rhodocetin alpha subunit; C-type lectin, domain swapping, toxin;
1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB:
3gpr_A
Length = 133
Score = 25.5 bits (56), Expect = 2.5
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 6 DCKSNWLPYEGSC 18
DC W + C
Sbjct: 1 DCPDGWSSTKSYC 13
>1j34_B Coagulation factor IX-binding protein B chain; magnesium ION,
calcium ION, GLA domain, protein binding/blood clotting
complex; HET: CGU; 1.55A {Trimeresurus flavoviridis}
SCOP: d.169.1.1 PDB: 1bj3_B 1ixx_B* 1j35_B* 1x2t_B*
1x2w_B 1wt9_B 1iod_B 1y17_B
Length = 123
Score = 25.4 bits (56), Expect = 2.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 6 DCKSNWLPYEGSC 18
DC S+W YEG C
Sbjct: 1 DCPSDWSSYEGHC 13
>1j34_A Coagulation factor IX-binding protein A chain; magnesium ION,
calcium ION, GLA domain, protein binding/blood clotting
complex; HET: CGU; 1.55A {Trimeresurus flavoviridis}
SCOP: d.169.1.1 PDB: 1bj3_A* 1j35_A* 1x2t_A* 1x2w_A
1ixx_A 1y17_A 1wt9_A 1iod_A*
Length = 129
Score = 25.5 bits (56), Expect = 2.8
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 6 DCKSNWLPYEGSC 18
DC S W YEG C
Sbjct: 1 DCPSGWSSYEGHC 13
>3ubu_B Agglucetin subunit beta-2; platelet inhibiting, agkisacucetin,
dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding;
1.91A {Deinagkistrodon acutus}
Length = 126
Score = 25.1 bits (55), Expect = 3.0
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 5 CDCKSNWLPYEGSC 18
C W YEG C
Sbjct: 2 FCCPLRWSAYEGHC 15
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics,
PSI, protein structure initiative; 2.33A {Vibrio
parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Length = 350
Score = 25.3 bits (55), Expect = 3.3
Identities = 5/18 (27%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 34 DLNRNFP-DQFDSSSERR 50
+LNR F + + + E
Sbjct: 111 NLNRLFDEKEHEPTKELA 128
>2afp_A Protein (SEA raven type II antifreeze protein); recombinant SEA
raven protein, solution backbone fold, C- type lectin;
NMR {Hemitripterus americanus} SCOP: d.169.1.1
Length = 129
Score = 25.0 bits (55), Expect = 3.4
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 5 CDCKSNWLPYEGSC 18
+C + W P C
Sbjct: 5 PNCPAGWQPLGDRC 18
>2e3x_C Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 122
Score = 25.1 bits (55), Expect = 3.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 6 DCKSNWLPYEGSC 18
DC S WL YE C
Sbjct: 2 DCPSGWLSYEQHC 14
>3hlx_A Pyrroloquinoline-quinone synthase; PQQC, PQQ biosynthesis, oxidase,
complex, all helical, oxido; HET: PQQ; 1.30A {Klebsiella
pneumoniae subsp} PDB: 3hml_A* 1otv_A 3hnh_A* 1otw_A*
Length = 258
Score = 25.1 bits (54), Expect = 3.8
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 50 REQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAIVASY 90
R+ L+ + + P + N F A +
Sbjct: 108 RDDLLSERHVLPGVRFAVDAYLN--FARRACWQEAACSSLT 146
>1c3a_A Flavocetin-A: alpha subunit; C-type lectin-like domains, membrane
protein; 2.50A {Trimeresurus flavoviridis} SCOP:
d.169.1.1 PDB: 1v4l_A
Length = 135
Score = 24.8 bits (54), Expect = 4.1
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 6 DCKSNWLPYEGSC 18
DC W Y+ C
Sbjct: 3 DCIPGWSAYDRYC 15
>1oz7_B Echicetin B-chain; platelet aggregation, dimer, toxin; 2.40A
{Echis carinatus} SCOP: d.169.1.1
Length = 123
Score = 24.6 bits (54), Expect = 4.4
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 6 DCKSNWLPYEGSC 18
+C +W YEG C
Sbjct: 1 NCLPDWSVYEGYC 13
>1jzn_A Galactose-specific lectin; C-type lectin, protein-disaccharide
complex, sugar binding P; HET: BGC GAL; 2.20A {Crotalus
atrox} SCOP: d.169.1.1 PDB: 1muq_A*
Length = 135
Score = 24.7 bits (54), Expect = 4.5
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 6 DCKSNWLPYEGSC 18
+C +WLP G C
Sbjct: 2 NCPLDWLPMNGLC 14
>1hq8_A NKG2-D; homodimer, CIS-proline, apoptosis; 1.95A {Mus musculus}
SCOP: d.169.1.1 PDB: 1jsk_A 1kcg_A*
Length = 123
Score = 24.6 bits (54), Expect = 5.2
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 5 CDCKSNWLPYEGSC 18
C +NW+ + +C
Sbjct: 4 GPCPNNWICHRNNC 17
>1ukm_A EMS16 A chain, EMS16 subunit A; domain swapping, C-type lectin,
toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP:
d.169.1.1 PDB: 1v7p_A*
Length = 134
Score = 24.7 bits (54), Expect = 5.5
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 6 DCKSNWLPYEGSC 18
DC S+W Y+ C
Sbjct: 3 DCPSDWTAYDQHC 15
>3alu_A Lectin CEL-IV, C-type; C-type lectin, raffinose, sugar binding
protein; HET: RAF; 1.65A {Cucumaria echinata} PDB:
3als_A* 3alt_A*
Length = 157
Score = 24.4 bits (53), Expect = 5.5
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 5 CDCKSNWLPYEGSC 18
C W + G C
Sbjct: 3 TSCPPLWTGFNGKC 16
>2py2_A Antifreeze protein type II; type II antifreeze protein; 1.70A
{Clupea harengus}
Length = 136
Score = 24.6 bits (54), Expect = 5.8
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 5 CDCKSNWLPYEGSC 18
+C ++W + G C
Sbjct: 2 DECPTDWKMFNGRC 15
>1jwi_B Platelet aggregation inducer; domain swapping, C-type lectin,
toxin; 2.00A {Bitis arietans} SCOP: d.169.1.1 PDB:
1uex_B
Length = 125
Score = 24.3 bits (53), Expect = 5.8
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 6 DCKSNWLPYEGSC 18
C +W Y+G C
Sbjct: 3 GCLPDWSSYKGHC 15
>3ubu_A Agglucetin subunit alpha-1; platelet inhibiting, agkisacucetin,
dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding;
1.91A {Deinagkistrodon acutus}
Length = 131
Score = 24.3 bits (53), Expect = 6.0
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 6 DCKSNWLPYEGSC 18
DC W Y+ SC
Sbjct: 3 DCLPGWSAYDQSC 15
>3gpr_C Rhodocetin subunit gamma; disulfide bond, lectin, secreted,
toxin, cell adhesion; 3.20A {Calloselasma rhodostoma}
Length = 134
Score = 24.3 bits (53), Expect = 6.1
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 6 DCKSNWLPYEGSC 18
+C W Y+ C
Sbjct: 2 NCLPGWSAYDQHC 14
>1sb2_B Rhodocetin beta subunit; C-type lectin, domain swapping, toxin;
1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB:
3gpr_B
Length = 129
Score = 24.3 bits (53), Expect = 6.1
Identities = 3/13 (23%), Positives = 5/13 (38%)
Query: 6 DCKSNWLPYEGSC 18
C + W + C
Sbjct: 3 RCPTTWSASKLYC 15
>1tdq_B Aggrecan core protein; extracellular matrix, lecticans,
tenascins, protein-protein interactions, C-type lectin
domain; 2.60A {Rattus norvegicus} SCOP: d.169.1.1
Length = 130
Score = 24.2 bits (53), Expect = 6.4
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 5 CDCKSNWLPYEGSC 18
C+ W ++G C
Sbjct: 5 EQCEEGWTKFQGHC 18
>3nh4_A Aspartoacylase-2; mercapturates, hydrolase; 2.00A {Mus musculus}
PDB: 3nh5_A 3nfz_A 3nh8_A*
Length = 327
Score = 24.8 bits (53), Expect = 6.4
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 23 RFVGRNNANGVDLNRNFPDQFDSSSERREQPL 54
R++ R DLNR+ F S+ + P
Sbjct: 72 RYLDR------DLNRSCTLTFLGSTATPDDPY 97
>1qdd_A Lithostathine; pancreatic stone inhibitor, metal binding protein;
HET: SIA NDG GAL; 1.30A {Homo sapiens} SCOP: d.169.1.1
PDB: 1lit_A
Length = 144
Score = 24.3 bits (53), Expect = 6.5
Identities = 3/14 (21%), Positives = 3/14 (21%)
Query: 5 CDCKSNWLPYEGSC 18
C Y C
Sbjct: 12 ISCPEGTNAYRSYC 25
>3bx4_A Aggretin alpha chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB:
2vrp_A
Length = 136
Score = 24.3 bits (53), Expect = 7.3
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 5 CDCKSNWLPYEGSC 18
DC W PY+ C
Sbjct: 3 EDCDFGWSPYDQHC 16
>2e3x_B Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 134
Score = 24.0 bits (52), Expect = 7.7
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 6 DCKSNWLPYEGSC 18
DC + Y C
Sbjct: 2 DCPPDSSLYRYFC 14
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.00A {Escherichia coli} SCOP:
b.69.11.1
Length = 343
Score = 24.3 bits (53), Expect = 7.9
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 67 ISFIKNNPFVLSGNLHGGAIVASYPFDD 94
IS FV G+ + G V+ +D
Sbjct: 89 ISTDHQGQFVFVGSYNAGN-VSVTRLED 115
>2z4u_A Ribosome-inactivating protein PD-L4; crystallization, X-RAY,
hydrolase; 1.10A {Phytolacca dioica} PDB: 2qes_A 2qet_A*
2z53_A 3h5k_A* 3le7_A* 1gik_A* 1j1q_A* 1j1r_A* 1j1s_A*
2q8w_A* 1apa_A 1qci_A* 1paf_A 1pag_A* 1qcg_A 1d6a_A*
1qcj_A*
Length = 261
Score = 24.4 bits (52), Expect = 8.4
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 8 KSNWLPYEGSCNSLARFVGRNNANGVDLNRN 38
+ + Y ++L G ++ + V L
Sbjct: 112 EKKAINYNSQYSTLQNKAGVSSRSQVQLGIQ 142
>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system;
2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D
1ja3_A 1p1z_D
Length = 203
Score = 24.1 bits (52), Expect = 8.5
Identities = 3/15 (20%), Positives = 3/15 (20%)
Query: 4 YCDCKSNWLPYEGSC 18
W Y C
Sbjct: 77 TGRGVKYWFCYSTKC 91
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate
metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or
CS, 2-methy synthase; 2.41A {Salmonella enterica}
Length = 404
Score = 24.0 bits (53), Expect = 9.0
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 77 LSGNLHGGA 85
L G HGGA
Sbjct: 245 LRGPKHGGA 253
>3g8k_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.00A {Mus musculus} PDB:
1qo3_C 3cad_A
Length = 130
Score = 23.9 bits (52), Expect = 9.1
Identities = 3/12 (25%), Positives = 4/12 (33%)
Query: 7 CKSNWLPYEGSC 18
+ W Y C
Sbjct: 7 FEKYWFCYGIKC 18
>3ff7_C Killer cell lectin-like receptor subfamily G member 1;
KLRG1-cadherin complex, calcium, cell adhesion, cell
junction, cell membrane; 1.80A {Homo sapiens}
Length = 112
Score = 23.9 bits (52), Expect = 9.2
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 7 CKSNWLPYEGSC 18
C W+ Y C
Sbjct: 1 CPDRWMKYGNHC 12
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle
structural genomics center for infectious disease,
tubercluosis; 2.30A {Mycobacterium tuberculosis}
Length = 414
Score = 24.1 bits (53), Expect = 9.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 77 LSGNLHGGA 85
L G LHGGA
Sbjct: 258 LKGRLHGGA 266
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.417
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,428,538
Number of extensions: 67025
Number of successful extensions: 271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 98
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)