RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17408
(96 letters)
>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 51.0 bits (121), Expect = 1e-09
Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 9/70 (12%)
Query: 26 GRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGA 85
GR N N DLNRNFPD F+ ++ R+ ET+A++ ++K FVLS NLHGGA
Sbjct: 126 GRENYNQYDLNRNFPDAFEYNNVSRQP---------ETVAVMKWLKTETFVLSANLHGGA 176
Query: 86 IVASYPFDDS 95
+VASYPFD+
Sbjct: 177 LVASYPFDNG 186
>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm
(Helicoverpa armigera) [TaxId: 29058]}
Length = 317
Score = 49.8 bits (118), Expect = 4e-09
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 13 PYEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVK----KLEPETLAMIS 68
N ++ N GVDLNRNF + ++S EPE+ +
Sbjct: 122 DRYWRKNRATGYMAGNLCMGVDLNRNFGMNWGTASSSSVCSDTFHGRSAFSEPESSVIRD 181
Query: 69 FIKNN--PFVLSGNLHGGAIVASYPFDDS 95
I + L ++H + Y + +
Sbjct: 182 IIAEHRNRMALYLDIHSFGSMILYGYGNG 210
>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm
(Helicoverpa zea) [TaxId: 7113]}
Length = 312
Score = 48.2 bits (114), Expect = 1e-08
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 7/93 (7%)
Query: 10 NWLPYEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKK-----LEPETL 64
+ S G D NRNF ++S ++ E ET
Sbjct: 114 TNERFWRKTRSTNNNPLSQICRGADGNRNFDFVWNSIGTSNSPCSDIYAGTSAFSEVETR 173
Query: 65 AMISFIKNNP--FVLSGNLHGGAIVASYPFDDS 95
+ + + L +H + YP+
Sbjct: 174 VVRDILHEHLARMALYLTMHSFGSMILYPWGHD 206
>d1m4la_ c.56.5.1 (A:) Carboxypeptidase A {Cow (Bos taurus) [TaxId:
9913]}
Length = 307
Score = 46.3 bits (109), Expect = 5e-08
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 23 RFVGRNNANGVDLNRNFPDQFD-----SSSERREQPLNVKKLEPETLAMISFIKNN-PFV 76
+ GVD NRN+ F SS E E +++ F+K++ F
Sbjct: 131 SVTSSSLCVGVDANRNWDAGFGKAGASSSPCSETYHGKYANSEVEVKSIVDFVKDHGNFK 190
Query: 77 LSGNLHGGAIVASYPFDDSK 96
++H + + YP+ +
Sbjct: 191 AFLSIHSYSQLLLYPYGYTT 210
>d1ayea1 c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 307
Score = 45.2 bits (106), Expect = 1e-07
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 6/98 (6%)
Query: 5 CDCKSNWLPYEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSER-----REQPLNVKKL 59
D V + GVD NRN+ F
Sbjct: 111 PDGYVFSQTKNRMWRKTRSKVSGSLCVGVDPNRNWDAGFGGPGASSNPCSDSYHGPSANS 170
Query: 60 EPETLAMISFIKNNP-FVLSGNLHGGAIVASYPFDDSK 96
E E +++ FIK++ LH + + +P+
Sbjct: 171 EVEVKSIVDFIKSHGKVKAFIILHSYSQLLMFPYGYKC 208
>d2bo9a1 c.56.5.1 (A:4-307) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 305
Score = 45.3 bits (106), Expect = 1e-07
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 26 GRNNANGVDLNRNFPDQFD-----SSSERREQPLNVKKLEPETLAMISFIKNNP-FVLSG 79
++ G D NRN+ F + E E +++ FI+ + F
Sbjct: 132 PGSSCIGADPNRNWNASFAGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFI 191
Query: 80 NLHGGAIVASYPFDDS 95
+LH + + YP+ S
Sbjct: 192 DLHSYSQLLMYPYGYS 207
>d1h8la2 c.56.5.1 (A:4-304) Carboxypeptidase D, catalytic domain
{Crested duck (Lophonetta specularioides) [TaxId: 8836]}
Length = 301
Score = 45.3 bits (106), Expect = 1e-07
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 9/68 (13%)
Query: 28 NNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAIV 87
NN+N DLNRNFPDQF ++ + ETLA++S++K PFVLS NLHGG++V
Sbjct: 133 NNSNNYDLNRNFPDQFFQVTDPPQP---------ETLAVMSWLKTYPFVLSANLHGGSLV 183
Query: 88 ASYPFDDS 95
+YPFDD
Sbjct: 184 VNYPFDDD 191
>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces
vulgaris [TaxId: 2026]}
Length = 323
Score = 40.6 bits (94), Expect = 6e-06
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 12/86 (13%)
Query: 23 RFVGRNNANGVDLNRNFPDQFDSSSERREQPLNV------KKLEPETLAMISFIKN---- 72
+ ++ G DLNRN+ ++ P + PET AM FI +
Sbjct: 133 QPNSGSSYVGTDLNRNYGYKWGCCGGSSGSPSSETYRGRSAFSAPETAAMRDFINSRVVG 192
Query: 73 --NPFVLSGNLHGGAIVASYPFDDSK 96
H + + YP+ +
Sbjct: 193 GKQQIKTLITFHTYSELILYPYGYTY 218
>d1z5ra1 c.56.5.1 (A:6-308) Carboxypeptidase B {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 304
Score = 39.8 bits (92), Expect = 1e-05
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 27 RNNANGVDLNRNFPDQFD-----SSSERREQPLNVKKLEPETLAMISFIKNNP--FVLSG 79
G D NRNF + + + + E ET A+ FI+NN
Sbjct: 130 GTTCIGTDPNRNFDAGWCTTGASTDPCDETYCGSAAESEKETKALADFIRNNLSSIKAYL 189
Query: 80 NLHGGAIVASYPFDDS 95
+H + + YP+
Sbjct: 190 TIHSYSQMILYPYSYD 205
>d1yw6a1 c.56.5.7 (A:1-322) Succinylglutamate desuccinylase AstE
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 28.9 bits (64), Expect = 0.085
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 31 NGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAIVASY 90
D+NR F ++ +E E ++LE K + +LH + +
Sbjct: 98 CHSDMNRMFGGRWQLFAESGETCR-ARELEQCLEDFYDQGKESVRWH-LDLHTAIRGSLH 155
Query: 91 PF 92
P
Sbjct: 156 PQ 157
>d3bdwa1 d.169.1.1 (A:59-179) CD94 {Human (Homo sapiens) [TaxId:
9606]}
Length = 121
Score = 26.1 bits (56), Expect = 0.49
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 5 CDCKSNWLPYEGSC 18
C C+ W+ Y +C
Sbjct: 1 CSCQEKWVGYRCNC 14
>d1yw4a1 c.56.5.7 (A:2-332) Succinylglutamate desuccinylase AstE
{Chromobacterium violaceum [TaxId: 536]}
Length = 331
Score = 25.8 bits (56), Expect = 0.99
Identities = 13/58 (22%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 34 DLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAIVASYP 91
D+NR F E E +LE + + LH AI S
Sbjct: 103 DMNRLFNGAHARHPELPESVR-AAELETLAAEFFAGARARKLHYD--LH-TAIRGSVF 156
>d1kg0c_ d.169.1.1 (C:) EBV gp42 {Epstein-Barr virus [TaxId:
10376]}
Length = 136
Score = 24.8 bits (53), Expect = 1.7
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 3 KYCDCKSNWLPYEGSC 18
YC+ + Y+G C
Sbjct: 15 TYCNTREYTFSYKGCC 30
>d1c3ab_ d.169.1.1 (B:) Snake coagglutinin beta chain {Habu snake
(Trimeresurus flavoviridis), flavocetin-A [TaxId:
88087]}
Length = 125
Score = 24.7 bits (52), Expect = 2.1
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 5 CDCKSNWLPYEGSC 18
C W Y+ C
Sbjct: 2 FCCPLGWSSYDEHC 15
>d1fs7a_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 471
Score = 24.7 bits (53), Expect = 2.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 37 RNFPDQFDSSSERREQPLNVKKLE 60
R +P QFDS + +E L+
Sbjct: 19 RYYPRQFDSWKKTKESDNITDMLK 42
>d2g9da1 c.56.5.7 (A:3-342) Succinylglutamate desuccinylase AstE
{Vibrio cholerae [TaxId: 666]}
Length = 340
Score = 24.2 bits (52), Expect = 2.8
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 14/70 (20%)
Query: 34 DLNRNFPDQFDSSSERREQPLNVKKLEPETLA--------------MISFIKNNPFVLSG 79
+LNR F D+ + S N+K L + A I K+ F +S
Sbjct: 109 NLNRLFDDKPHTPSTELAIADNLKVLLRQFFANTDEHSRWHLDLHCAIRGSKHYSFAVSP 168
Query: 80 NLHGGAIVAS 89
S
Sbjct: 169 KARHPVRSRS 178
>d1umrc_ d.169.1.1 (C:) Snake coagglutinin beta chain {South
american rattlesnake (Crotalus durissus terrificus),
convulxin [TaxId: 8732]}
Length = 125
Score = 23.9 bits (50), Expect = 2.9
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 5 CDCKSNWLPYEGSC 18
C S+W Y+ C
Sbjct: 2 FCCPSHWSSYDRYC 15
>d1oz7b_ d.169.1.1 (B:) Snake coagglutinin beta chain {Saw-scaled
viper (Echis carinatus), echicetin [TaxId: 40353]}
Length = 123
Score = 23.9 bits (50), Expect = 3.5
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 6 DCKSNWLPYEGSC 18
+C +W YEG C
Sbjct: 1 NCLPDWSVYEGYC 13
>d1jnda1 c.1.8.5 (A:2-278,A:371-420) Imaginal disc growth factor-2
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 327
Score = 24.0 bits (51), Expect = 3.7
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 19 NSLARFVGRNNANGVDLNRNFPDQFDSSS 47
S V +G+DL FP
Sbjct: 112 RSAYELVKTYGFDGLDLAYQFPKNKPRKV 140
>d1j34b_ d.169.1.1 (B:) Snake coagglutinin beta chain {Habu snake
(Trimeresurus flavoviridis) [TaxId: 88087]}
Length = 123
Score = 23.9 bits (50), Expect = 3.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 6 DCKSNWLPYEGSC 18
DC S+W YEG C
Sbjct: 1 DCPSDWSSYEGHC 13
>d1fvub_ d.169.1.1 (B:) Snake coagglutinin beta chain {Jararaca
(Bothrops jararaca), botrocetin [TaxId: 8724]}
Length = 125
Score = 23.7 bits (49), Expect = 4.7
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 6 DCKSNWLPYEGSC 18
DC +W YEG C
Sbjct: 1 DCPPDWSSYEGHC 13
>d1fvua_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Jararaca
(Bothrops jararaca), botrocetin [TaxId: 8724]}
Length = 133
Score = 23.2 bits (48), Expect = 5.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 6 DCKSNWLPYEGSC 18
DC S W YEG+C
Sbjct: 1 DCPSGWSSYEGNC 13
>d1sb2a1 d.169.1.1 (A:1-132) Snake coagglutinin alpha chain
{Malayan pit viper (Calloselasma rhodostoma),
rhodocetin [TaxId: 8717]}
Length = 132
Score = 23.2 bits (48), Expect = 6.0
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 6 DCKSNWLPYEGSC 18
DC W + C
Sbjct: 1 DCPDGWSSTKSYC 13
>d1umra_ d.169.1.1 (A:) Snake coagglutinin alpha chain {South
american rattlesnake (Crotalus durissus terrificus),
convulxin [TaxId: 8732]}
Length = 135
Score = 23.1 bits (48), Expect = 6.1
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 5 CDCKSNWLPYEGSC 18
C S+W Y+ C
Sbjct: 2 LHCPSDWYYYDQHC 15
>d2afpa_ d.169.1.1 (A:) Type II antifreeze protein {Sea raven
(Hemitripterus americanus) [TaxId: 8094]}
Length = 129
Score = 23.1 bits (48), Expect = 6.3
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 5 CDCKSNWLPYEGSC 18
+C + W P C
Sbjct: 5 PNCPAGWQPLGDRC 18
>d1j34a_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Habu snake
(Trimeresurus flavoviridis) [TaxId: 88087]}
Length = 129
Score = 23.2 bits (48), Expect = 7.0
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 6 DCKSNWLPYEGSC 18
DC S W YEG C
Sbjct: 1 DCPSGWSSYEGHC 13
>d1v7pa_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Snake
(Echis multisquamatus), Ems16 [TaxId: 93050]}
Length = 134
Score = 22.8 bits (47), Expect = 7.5
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 6 DCKSNWLPYEGSC 18
DC S+W Y+ C
Sbjct: 3 DCPSDWTAYDQHC 15
>d1hq8a_ d.169.1.1 (A:) NK cell-activating receptor nkg2d {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 123
Score = 22.9 bits (48), Expect = 7.5
Identities = 6/16 (37%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 4 YCD-CKSNWLPYEGSC 18
YC C +NW+ + +C
Sbjct: 2 YCGPCPNNWICHRNNC 17
>d1sb2b1 d.169.1.1 (B:2-128) Snake coagglutinin beta chain
{Malayan pit viper (Calloselasma rhodostoma),
rhodocetin [TaxId: 8717]}
Length = 127
Score = 22.8 bits (47), Expect = 7.6
Identities = 3/13 (23%), Positives = 5/13 (38%)
Query: 6 DCKSNWLPYEGSC 18
C + W + C
Sbjct: 2 RCPTTWSASKLYC 14
>d1jzna_ d.169.1.1 (A:) Galactose-specific C-type lectin {Western
diamondback rattlesnake (Crotalus atrox) [TaxId: 8730]}
Length = 135
Score = 22.8 bits (47), Expect = 8.2
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 6 DCKSNWLPYEGSC 18
+C +WLP G C
Sbjct: 2 NCPLDWLPMNGLC 14
>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 22.8 bits (49), Expect = 9.2
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 50 REQPLNVKKLEPETLAMISFIKNN 73
R++ L V++L+ E ++I +++NN
Sbjct: 21 RDRELWVQRLKEEYQSLIRYVENN 44
>d1c3aa_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Habu snake
(Trimeresurus flavoviridis), flavocetin-A [TaxId:
88087]}
Length = 135
Score = 22.8 bits (47), Expect = 9.5
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 6 DCKSNWLPYEGSC 18
DC W Y+ C
Sbjct: 3 DCIPGWSAYDRYC 15
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.417
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 358,751
Number of extensions: 13830
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 48
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)