Query psy1741
Match_columns 333
No_of_seqs 98 out of 108
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 21:46:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3966|consensus 100.0 7.1E-87 1.5E-91 626.5 21.7 297 1-326 27-332 (360)
2 PF07264 EI24: Etoposide-induc 99.9 1.7E-24 3.6E-29 195.0 16.3 188 79-272 15-211 (219)
3 PRK04949 putative sulfate tran 98.8 1E-06 2.2E-11 83.7 20.3 185 78-272 22-221 (251)
4 PRK12768 CysZ-like protein; Re 98.2 0.00055 1.2E-08 64.9 21.9 184 78-272 13-206 (240)
5 COG2981 CysZ Uncharacterized p 97.5 0.038 8.2E-07 52.7 21.7 190 78-279 20-223 (250)
6 KOG3088|consensus 91.6 14 0.00031 36.5 16.5 147 76-249 124-282 (313)
7 COG4200 Uncharacterized protei 45.9 2.9E+02 0.0063 26.8 14.4 63 81-159 11-73 (239)
8 PF13038 DUF3899: Domain of un 31.0 78 0.0017 25.2 4.0 25 79-103 65-89 (92)
9 KOG3966|consensus 29.2 3.1E+02 0.0066 27.6 8.3 95 60-182 78-188 (360)
10 COG4818 Predicted membrane pro 28.2 2.1E+02 0.0046 24.3 6.0 52 80-152 29-80 (105)
11 PF12404 DUF3663: Peptidase ; 27.9 21 0.00045 28.8 0.1 14 251-264 64-77 (77)
12 COG5594 Uncharacterized integr 24.7 1.1E+03 0.023 27.0 14.3 37 130-166 411-447 (827)
13 PF10233 Cg6151-P: Uncharacter 22.8 80 0.0017 27.1 2.8 40 243-282 55-98 (113)
14 TIGR02230 ATPase_gene1 F0F1-AT 20.1 2.8E+02 0.0061 23.3 5.4 8 106-113 51-58 (100)
No 1
>KOG3966|consensus
Probab=100.00 E-value=7.1e-87 Score=626.48 Aligned_cols=297 Identities=39% Similarity=0.670 Sum_probs=280.1
Q ss_pred ChhhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhhhhccCCCCccccCCCCchHHHHhhhhccCCCCccCCCCCCCcchh
Q psy1741 1 MGHALLKGILDSLKGIIIIFRLDNKLKERSELKRKKKEFESPSHQKTQSSSVPEELKRKKKEFESPSHQKTQSSSVPEEN 80 (333)
Q Consensus 1 ~~~~~~~g~~ds~~g~~~i~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (333)
+++|.++|++||++|++++...|+|.++++||+++|+ +++++.+||++....| ++.||
T Consensus 27 ~~~D~arg~~ds~~gi~~v~iree~akq~~ee~~~r~----------------~~~vL~~rrp~~~~~k------~~~Ep 84 (360)
T KOG3966|consen 27 IARDFARGFIDSFKGITFVRIREEEAKQVKEEPPKRV----------------ERTVLMMRRPKQGIFK------RPPEP 84 (360)
T ss_pred HHHHHhhcCCccccchhhhhhhHHHHHHhhhcCCchH----------------HHHHHhhcCccccccc------CCCCC
Confidence 3689999999999999999999999999999999998 5788888886665544 45999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1741 81 KVWKRTVQCCLLNGGVFCGSILLFDHILLPFLLMILRLILGSSSTYTQFYWTWINLVLSWTFNALWVLPLFTLSKVINSL 160 (333)
Q Consensus 81 ~v~~r~~qc~lLNg~vFl~SIlif~~~l~P~l~~~l~~~~g~~~~~~~~~~~~l~~~l~~~f~~lWvlPly~lS~ilNs~ 160 (333)
++.|+..|||++||+++|.|+++|+++++|+|+.+++.+.| ++++|+.+|+|++++|+.+|+..||+|+|++||++|++
T Consensus 85 ~i~k~~F~cc~wngg~~w~s~llf~~v~ipiL~~~~s~f~g-~~s~h~~vw~wl~~~ls~lfg~iwVlPiF~lSkiV~al 163 (360)
T KOG3966|consen 85 PIKKDSFLCCLWNGGAMWISFLLFWQVCIPILGLFFSFFDG-TDSGHNVVWGWLHPILSLLFGYIWVLPIFFLSKIVQAL 163 (360)
T ss_pred chHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHheecc-CCccccchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888 66678899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhcceeeecC
Q psy1741 161 WFQDIADSAYRYTQGRPHHFTSLSKLLADTLFSLLIQSLFLVQTMLVSKLPLYLLSDSIGLIHMCLLYSLYAYEYKWYNQ 240 (333)
Q Consensus 161 Wf~dIA~~a~~~~~~~p~~~~svs~~iad~ly~vLl~~~Fllq~~lv~~iPip~IG~~l~fl~ms~LyS~YcFEYkW~~~ 240 (333)
||+|||++||++.|++|++.+++|+++||++++.|+|++|++|+|+++++|||+||+.++++|||+|||+|||||+|.|+
T Consensus 164 WF~DIa~aa~rv~k~~P~p~p~~Sk~~Ad~Lfs~l~Q~lFLiQgMlv~l~Pi~lVg~~i~~lHm~LLySlYcFeY~wfn~ 243 (360)
T KOG3966|consen 164 WFSDIAGAAMRVLKLPPPPVPPFSKMLADTLFSALHQILFLIQGMLVQLLPIPLVGPVIVYLHMALLYSLYCFEYFWFNY 243 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcchHHHHHHHHHHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHhhchhhhchhhHHHHHHhhccchhhhccchhhhhHHHHH---HHHHhcccc------ccccccchhHH
Q psy1741 241 GWELHRRLTFIEHNFPYFLGFGLTLAVLTHVCSSYVIRQDILKTSSLFHLL---FIILLLCCS------EYQLKLFSPVI 311 (333)
Q Consensus 241 g~~L~~Rl~~~E~~WaYFlGFG~p~tllt~~~~s~~v~~~~~~~~~ifslL---FII~a~~~~------~~~L~iF~p~~ 311 (333)
|||+|||+++||+|||||+|||+|+|++|.+.+|+++|+| +||+| |||++-||+ .+++++|+||+
T Consensus 244 g~e~hrRl~~iE~nWPYffGFG~PLa~lt~~sSs~ivssc------iFsilFPlFIis~neak~p~~~~~~~lrlfs~Vv 317 (360)
T KOG3966|consen 244 GLEFHRRLDIIESNWPYFFGFGTPLALLTSISSSMIVSSC------IFSILFPLFIISSNEAKYPANWNRKYLRLFSKVV 317 (360)
T ss_pred cHHHHHHHHHHHhcCchhccCCcHHHHHHhhhhhHHHHHH------HHHHHHHHHeecccccCCCchHHHHHHHhcchhh
Confidence 9999999999999999999999999999999999999999 99999 899996666 46899999999
Q ss_pred HHHHHHHhhhcCccc
Q psy1741 312 AISNAVFNHTIRPAQ 326 (333)
Q Consensus 312 ~~~n~~f~~~~~~~~ 326 (333)
.++|+++.++.+-++
T Consensus 318 F~snrl~~kt~yvq~ 332 (360)
T KOG3966|consen 318 FCSNRLYMKTEYVQK 332 (360)
T ss_pred hhhhHHHHHHHHHHH
Confidence 999999998876443
No 2
>PF07264 EI24: Etoposide-induced protein 2.4 (EI24); PDB: 3TX3_B.
Probab=99.92 E-value=1.7e-24 Score=194.98 Aligned_cols=188 Identities=27% Similarity=0.508 Sum_probs=147.7
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q psy1741 79 ENKVWKRTVQCCLLNGGVFCGSILLFDHILLPFLLMILRLILGSSSTYTQFYWTWINLVLSWTFNA--LWVLPLFTLSKV 156 (333)
Q Consensus 79 ~~~v~~r~~qc~lLNg~vFl~SIlif~~~l~P~l~~~l~~~~g~~~~~~~~~~~~l~~~l~~~f~~--lWvlPly~lS~i 156 (333)
+|++++..++|+++|+++++++.+.+...+.|.+...++... ...--.+.|+...+..++.+ +|++|.++.+.+
T Consensus 15 ~~~l~~~~l~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 90 (219)
T PF07264_consen 15 SPKLRRLSLIPLLLNLLLFLALFIFLWSYLDPLLEWLLSGSP----SWDWLQWLWIAWIIFFLLAVLLFWLLFSYLISLI 90 (219)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999888888887766554211 00000001456678888887 999999999999
Q ss_pred HHHHhHHHHHHHHHHHcCC------CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Q psy1741 157 INSLWFQDIADSAYRYTQG------RPHHFTSLSKLLADTLFSLLIQSLFLVQTMLVSKLPLYLLSDSIGLIHMCLLYSL 230 (333)
Q Consensus 157 lNs~Wf~dIA~~a~~~~~~------~p~~~~svs~~iad~ly~vLl~~~Fllq~~lv~~iPip~IG~~l~fl~ms~LyS~ 230 (333)
+|.+|++||++++.+..++ +|+...++.+.+.|.+++++++.++.++...+.++| ++|.++.+++.+|+|++
T Consensus 91 ~~~f~~~~i~~~ve~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~l~L~fIP--~vg~~~~~~~~~~l~~~ 168 (219)
T PF07264_consen 91 VSPFWYDDIAERVEKHLEGRHYPHSPPSSFSSLWRSLKDSLKSLLLFLVLLLLLLPLYFIP--VVGQILFFVLWFWLNAY 168 (219)
T ss_dssp HHHH-HHHHHHHHHHHHTT---TTSSCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHST--THHH----HHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cccchHHHHHHHHHHHH
Confidence 9999999999999543332 345567899999999999999999999999999999 89999999999999999
Q ss_pred -hhcceeeecCCcchHHHHHHHHhhchhhhchhhHHHHHHhhc
Q psy1741 231 -YAYEYKWYNQGWELHRRLTFIEHNFPYFLGFGLTLAVLTHVC 272 (333)
Q Consensus 231 -YcFEYkW~~~g~~L~~Rl~~~E~~WaYFlGFG~p~tllt~~~ 272 (333)
|||||.|...|++.++|.+++|+||+|++|||++++++...+
T Consensus 169 ~~~~e~~~~~~~~~~~er~~~~~~~~~~~~gfG~~~~ll~~IP 211 (219)
T PF07264_consen 169 FLGFEYLWSSLGRSFEERKRFLERNRGYFLGFGLPFALLLLIP 211 (219)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHCTHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999976653
No 3
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=98.78 E-value=1e-06 Score=83.65 Aligned_cols=185 Identities=13% Similarity=0.153 Sum_probs=131.1
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHH----HHHHHHHHH
Q psy1741 78 EENKVWKRTVQCCLLNGGVFCGSILLFDHILLPFLLMILRLILGSSSTYTQFYWTWINLVLSWTFNA----LWVLPLFTL 153 (333)
Q Consensus 78 ~~~~v~~r~~qc~lLNg~vFl~SIlif~~~l~P~l~~~l~~~~g~~~~~~~~~~~~l~~~l~~~f~~----lWvlPly~l 153 (333)
.+|++++=++.-.++|.++|.+.++..-..+...+.++++. .++ -.+|++..+..+..+ +-.+=.-.+
T Consensus 22 ~~P~lr~~~liPl~inllLf~~~l~~~~~~~~~~l~~l~~~----~p~----wl~wl~~ll~~l~~l~~l~l~~~lf~~v 93 (251)
T PRK04949 22 LQPGLRRFVILPLLVNILLFGGAFWWLFTQLDAWIDWLMSQ----LPD----WLSWLSYLLWPLAVLSVLLVFSFFFSTL 93 (251)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Ccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999888877655544444434444331 111 225555555444432 222223345
Q ss_pred HHHHHHHhHHHHHHHHHHHcCCCCCCcch-------hHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH----HHHHHH
Q psy1741 154 SKVINSLWFQDIADSAYRYTQGRPHHFTS-------LSKLLADTLFSLLIQSLFLVQTMLVSKLPLYLLS----DSIGLI 222 (333)
Q Consensus 154 S~ilNs~Wf~dIA~~a~~~~~~~p~~~~s-------vs~~iad~ly~vLl~~~Fllq~~lv~~iPip~IG----~~l~fl 222 (333)
+-++.+-++.++|++.-+...|+|..-.+ +.+.+.+++-++.......+--.+++++| .+| +++.|+
T Consensus 94 ~~~IaaPF~~~lAE~VE~~l~g~~~~~~~~~~~~~~~~r~l~~el~kl~y~l~~~i~llll~fIP--~vg~~~~pvl~~~ 171 (251)
T PRK04949 94 ANFIAAPFNGLLAEKVEARLTGETLPDTGIAGLVKDVPRILKREWQKLAYYLPRAIVLLLLSFIP--VVGQTVAPVLWFL 171 (251)
T ss_pred HHHHHHHHhHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccHHHHHHHHH
Confidence 66778889999999998876666433222 23456666655544444444444567888 788 589999
Q ss_pred HHHHHHHHhhcceeeecCCcchHHHHHHHHhhchhhhchhhHHHHHHhhc
Q psy1741 223 HMCLLYSLYAYEYKWYNQGWELHRRLTFIEHNFPYFLGFGLTLAVLTHVC 272 (333)
Q Consensus 223 ~ms~LyS~YcFEYkW~~~g~~L~~Rl~~~E~~WaYFlGFG~p~tllt~~~ 272 (333)
.-+|+-+.=-+||-..++|.+..++.+..-+|.+-=+|||...++++..+
T Consensus 172 ~~awll~~ey~d~~~~r~~~~~~~~r~~l~~~r~~~~gfG~~~~l~~~IP 221 (251)
T PRK04949 172 FSAWMMAIQYCDYPFDNHKVSFKDMRAALRQKRGTSLQFGALVSLFTMIP 221 (251)
T ss_pred HHHHHHHHHHhHhHHHHCCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998874
No 4
>PRK12768 CysZ-like protein; Reviewed
Probab=98.19 E-value=0.00055 Score=64.89 Aligned_cols=184 Identities=13% Similarity=0.067 Sum_probs=123.9
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHH-HHHHH-
Q psy1741 78 EENKVWKRTVQCCLLNGGVFCGSILLF----DHILLPFLLMILRLILGSSSTYTQFYWTWINLVLSWTFNALW-VLPLF- 151 (333)
Q Consensus 78 ~~~~v~~r~~qc~lLNg~vFl~SIlif----~~~l~P~l~~~l~~~~g~~~~~~~~~~~~l~~~l~~~f~~lW-vlPly- 151 (333)
.||+.|+-+.+|..+-..++.+-...+ ...+.|.+....+ ..| +--+|++..+..+..+.- +.-.|
T Consensus 13 ~~~~~r~vl~~~~~lt~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~p----~wl~wL~~ll~~l~~l~~l~~~~fl 84 (240)
T PRK12768 13 LSPPMRSVFWKVLGLTLLLLVVLWFALRRLFSWFAWPWAEQLLP----GFP----DWAGWLGWVLSIAAGLGLALGLALL 84 (240)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCc----cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688889889999888776654432222 1112222222111 011 112455544444443221 11122
Q ss_pred --HHHHHHHHHhHHHHHHHHHHHcCC--CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Q psy1741 152 --TLSKVINSLWFQDIADSAYRYTQG--RPHHFTSLSKLLADTLFSLLIQSLFLVQTMLVSKLPLYLLSDSIGLIHMCLL 227 (333)
Q Consensus 152 --~lS~ilNs~Wf~dIA~~a~~~~~~--~p~~~~svs~~iad~ly~vLl~~~Fllq~~lv~~iPip~IG~~l~fl~ms~L 227 (333)
.++-++.+.++.++|++.-+..-+ .|....++.+++.|++-.++......+-...+.++| .+|.++.++..+|+
T Consensus 85 f~~va~~IaapF~~~lae~VE~~~yp~~~~~~~~~i~~sl~~~l~~l~~~l~~~ll~L~L~fIP--~v~~vl~~l~~awL 162 (240)
T PRK12768 85 IAPVTALIAGFFLDDVAEIVEREDYPAEPPGTALPLGRALIESLKFLGLVILGNLVALPLLFVP--GINLIAFFVINGYL 162 (240)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhhCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 345778899999999987663322 233334567778888777766555555666667888 78999999999999
Q ss_pred HHHhhcceeeecCCcchHHHHHHHHhhchhhhchhhHHHHHHhhc
Q psy1741 228 YSLYAYEYKWYNQGWELHRRLTFIEHNFPYFLGFGLTLAVLTHVC 272 (333)
Q Consensus 228 yS~YcFEYkW~~~g~~L~~Rl~~~E~~WaYFlGFG~p~tllt~~~ 272 (333)
.+-=-|||-..+++ +.+++.+...+|.+-..|||.++++++..+
T Consensus 163 l~~ey~d~a~~r~~-~~~e~r~~l~~~r~~~~~fG~~~all~~IP 206 (240)
T PRK12768 163 LGREFFEFAAMRFR-SEAEAKAFRRKHATTVFLAGLVIAAFVAIP 206 (240)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHhcccHHHHHHHHHHHHHHhH
Confidence 99877799999988 999999999999999999999999999875
No 5
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=97.52 E-value=0.038 Score=52.74 Aligned_cols=190 Identities=15% Similarity=0.200 Sum_probs=128.8
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHH-HHH---H
Q psy1741 78 EENKVWKRTVQCCLLNGGVFCGSILLFDHILLPFLLMILRLILGSSSTYTQFYWTWINLVLSWTFNALWVLP-LFT---L 153 (333)
Q Consensus 78 ~~~~v~~r~~qc~lLNg~vFl~SIlif~~~l~P~l~~~l~~~~g~~~~~~~~~~~~l~~~l~~~f~~lWvlP-ly~---l 153 (333)
.+|-+++=++--.++|..+..|-...+-+-..|-+..+.+ ...|--+|+..++..+....-.+= -|. +
T Consensus 20 ~rpglrrfvilpLl~ni~L~~gl~~~~~~~~~~wid~Lm~--------~iPdWl~wLs~v~~~la~L~lll~~~~lfs~v 91 (250)
T COG2981 20 TRPGLRRFVILPLLLNILLWGGLFWLLFSQALPWIDTLMP--------GIPDWLGWLSYLLWILAVLLLLLVFAFLFSTV 91 (250)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468888899999999977766666665666666555433 122222565544433332221111 122 3
Q ss_pred HHHHHHHhHHHHHHHHHHHcCCC--CCC-----cchhHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccchHHHHHHHH
Q psy1741 154 SKVINSLWFQDIADSAYRYTQGR--PHH-----FTSLSKLLADTLFSLLIQSLFLVQTMLVSKLP---LYLLSDSIGLIH 223 (333)
Q Consensus 154 S~ilNs~Wf~dIA~~a~~~~~~~--p~~-----~~svs~~iad~ly~vLl~~~Fllq~~lv~~iP---ip~IG~~l~fl~ 223 (333)
+-++.+-|+.|+|+..-+...|+ |++ ...+-++++-+.-.+...+-..+...++.++| -+ +++++-|+.
T Consensus 92 ~~~IAapFng~lAEkvE~~l~g~~~~d~~~~~l~~dipR~l~re~kkL~~~lp~~ivll~L~fvP~~g~~-v~pv~~flf 170 (250)
T COG2981 92 ANLIAAPFNGLLAEKVEKRLTGETPPDPGGVGLMKDIPRALAREWKKLGYVLPGAIVLLLLLFVPGVGQT-VAPVAWFLF 170 (250)
T ss_pred HHHHHhhhhhHHHHHHHHHHcCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCh-HHHHHHHHH
Confidence 44577889999999888877663 222 11244666777777777777888888899999 22 455788999
Q ss_pred HHHHHHHhhcceeeecCCcchHHHHHHHHhhchhhhchhhHHHHHHhhccchhhhc
Q psy1741 224 MCLLYSLYAYEYKWYNQGWELHRRLTFIEHNFPYFLGFGLTLAVLTHVCSSYVIRQ 279 (333)
Q Consensus 224 ms~LyS~YcFEYkW~~~g~~L~~Rl~~~E~~WaYFlGFG~p~tllt~~~~s~~v~~ 279 (333)
-+|+-|-=-|||--++...++++-....-++=+==+|||...++.|+.+ ++|-
T Consensus 171 t~wmlaiqy~dyp~dnhk~~f~~mr~~l~q~~~~~~~fGlv~~~f~~IP---lvNl 223 (250)
T COG2981 171 TAWMLAIQYFDYPADNHKVPFAEMRLLLRQYRVTVFGFGLVVALFTAIP---LVNL 223 (250)
T ss_pred HHHHHHHHHhccHHhcCCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHH
Confidence 9999999999999999999966655555555556679999988888764 5553
No 6
>KOG3088|consensus
Probab=91.60 E-value=14 Score=36.54 Aligned_cols=147 Identities=13% Similarity=0.134 Sum_probs=67.1
Q ss_pred CcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHH----HHHHHHHHH
Q psy1741 76 VPEENKVWKRTVQCCLLNGGVFCGSILLFDHILLPFLLMILRLILGSSSTYTQFYWTWINLVLSWTF----NALWVLPLF 151 (333)
Q Consensus 76 ~~~~~~v~~r~~qc~lLNg~vFl~SIlif~~~l~P~l~~~l~~~~g~~~~~~~~~~~~l~~~l~~~f----~~lWvlPly 151 (333)
+.+-+++.+++.-..+.+.+ .++.+++.=+..| ++ +.+ +..|. +..++..+| +++|.=|+|
T Consensus 124 Pv~~Qk~vk~~yylwm~~~~------tL~~Niia~la~~-----i~-g~~--~~~f~-Laii~fllftPcsyVcWyRPlY 188 (313)
T KOG3088|consen 124 PVEFQKLVKRAYYLWMGLVL------TLLWNIIACLAWW-----IK-GGG--GTIFG-LAIIWFLLFTPCSYVCWYRPLY 188 (313)
T ss_pred CHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-----Hc-CCC--chhhH-HHHHHHHHhCCceeeEeehHHH
Confidence 66777888887766655542 4444544332222 22 111 12221 233333333 678988988
Q ss_pred HHHHH-----HHHHhHH---HHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Q psy1741 152 TLSKV-----INSLWFQ---DIADSAYRYTQGRPHHFTSLSKLLADTLFSLLIQSLFLVQTMLVSKLPLYLLSDSIGLIH 223 (333)
Q Consensus 152 ~lS~i-----lNs~Wf~---dIA~~a~~~~~~~p~~~~svs~~iad~ly~vLl~~~Fllq~~lv~~iPip~IG~~l~fl~ 223 (333)
-.-+- .-.+.|. .|+=.....-+.+--...+....|.-.-.++++-++|++-..+. -+-..+++..
T Consensus 189 kAFRsDSSf~F~~FFF~y~~q~~~~v~qAvgf~g~~~~G~i~ai~~~~~~i~v~i~m~i~a~~F------t~~av~~i~~ 262 (313)
T KOG3088|consen 189 KAFRTDSSFNFGAFFFTYFFQIVFCVFQAVGFPGWGLCGWIPAIDVLSGNIAVGILMLIGAGLF------TLEAVLSIWV 262 (313)
T ss_pred HHhccccchhhHHHHHHHHHHHHHHHHHHHccCCcchhhhhhHhhccCcchHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 64321 1112222 22222333333221222232223322234444444444433222 1335677778
Q ss_pred HHHHHHHhhcceeeecCCcchHHHHH
Q psy1741 224 MCLLYSLYAYEYKWYNQGWELHRRLT 249 (333)
Q Consensus 224 ms~LyS~YcFEYkW~~~g~~L~~Rl~ 249 (333)
+.=+|+||- ..|-+.+++..
T Consensus 263 i~kVh~~yR------gsG~sf~kaq~ 282 (313)
T KOG3088|consen 263 LQKVHSYYR------GSGASFQKAQE 282 (313)
T ss_pred HHHHHHHHH------hccHhHHHHHH
Confidence 888899873 33555555544
No 7
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.86 E-value=2.9e+02 Score=26.77 Aligned_cols=63 Identities=25% Similarity=0.311 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1741 81 KVWKRTVQCCLLNGGVFCGSILLFDHILLPFLLMILRLILGSSSTYTQFYWTWINLVLSWTFNALWVLPLFTLSKVINS 159 (333)
Q Consensus 81 ~v~~r~~qc~lLNg~vFl~SIlif~~~l~P~l~~~l~~~~g~~~~~~~~~~~~l~~~l~~~f~~lWvlPly~lS~ilNs 159 (333)
|++|.+.--.++=|-++.+++.++++.- +|. ...+.|. +...-+..+|.+|.+|+. +|-++..
T Consensus 11 Klk~~~~wllil~~P~li~~i~F~n~~~-------------~~~-~~s~~W~-~~~~~~~~~h~~~~lpv~-~~i~i~l 73 (239)
T COG4200 11 KLKKMLAWLLILFGPLLIGGIGFFNLIQ-------------NDR-TDSQPWA-AIYEQSSSFHGFIFLPVI-LSILIAL 73 (239)
T ss_pred HHHhhHHHHHHHHhHHHHHHHHHHHHHh-------------ccc-CccHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4444555555555555556666554431 122 2234554 223447789999999995 4444433
No 8
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=31.00 E-value=78 Score=25.15 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHH
Q psy1741 79 ENKVWKRTVQCCLLNGGVFCGSILL 103 (333)
Q Consensus 79 ~~~v~~r~~qc~lLNg~vFl~SIli 103 (333)
+..+.+.+..+++.++++++.|+++
T Consensus 65 ~~~~~~~~~~~ll~~~ll~l~~iil 89 (92)
T PF13038_consen 65 KYRVSRWTYPLLLIGLLLILLSIIL 89 (92)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888887666666654
No 9
>KOG3966|consensus
Probab=29.25 E-value=3.1e+02 Score=27.57 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=49.9
Q ss_pred hhccCCCCccCCCCCCCcchhHHHHHHHHHHhhhhHHHHH---HHHHHH-------------HHHHHHHHHHHHHHhcCC
Q psy1741 60 KKEFESPSHQKTQSSSVPEENKVWKRTVQCCLLNGGVFCG---SILLFD-------------HILLPFLLMILRLILGSS 123 (333)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~v~~r~~qc~lLNg~vFl~---SIlif~-------------~~l~P~l~~~l~~~~g~~ 123 (333)
++|+++|+++|+ ..+..+.+..+.|..+.++ .|.++. .++.--++.+|+.+||
T Consensus 78 ~k~~~Ep~i~k~---------~F~cc~wngg~~w~s~llf~~v~ipiL~~~~s~f~g~~s~h~~vw~wl~~~ls~lfg-- 146 (360)
T KOG3966|consen 78 FKRPPEPPIKKD---------SFLCCLWNGGAMWISFLLFWQVCIPILGLFFSFFDGTDSGHNVVWGWLHPILSLLFG-- 146 (360)
T ss_pred ccCCCCCchHHH---------HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHheeccCCccccchHhhhhHHHHHHHH--
Confidence 556666666655 6677777776666543222 122211 1222223344455555
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCCCcch
Q psy1741 124 STYTQFYWTWINLVLSWTFNALWVLPLFTLSKVINSLWFQDIADSAYRYTQGRPHHFTS 182 (333)
Q Consensus 124 ~~~~~~~~~~l~~~l~~~f~~lWvlPly~lS~ilNs~Wf~dIA~~a~~~~~~~p~~~~s 182 (333)
-+|-.=-.+++-+-+++|.-=+- |.|-++.+....+-.+...
T Consensus 147 -----~iwVlPiF~lSkiV~alWF~DIa------------~aa~rv~k~~P~p~p~~Sk 188 (360)
T KOG3966|consen 147 -----YIWVLPIFFLSKIVQALWFSDIA------------GAAMRVLKLPPPPVPPFSK 188 (360)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhcCCCCCCCCHHH
Confidence 23332235677788888875543 4466666666655444443
No 10
>COG4818 Predicted membrane protein [Function unknown]
Probab=28.17 E-value=2.1e+02 Score=24.29 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1741 80 NKVWKRTVQCCLLNGGVFCGSILLFDHILLPFLLMILRLILGSSSTYTQFYWTWINLVLSWTFNALWVLPLFT 152 (333)
Q Consensus 80 ~~v~~r~~qc~lLNg~vFl~SIlif~~~l~P~l~~~l~~~~g~~~~~~~~~~~~l~~~l~~~f~~lWvlPly~ 152 (333)
+=||=-..|+++.=+++-+ +++-..++|.+.|+++. .+..+--.+|+.|+|-
T Consensus 29 ~FVrFHAmQS~ltF~~l~~---l~ill~~iP~Ig~lls~------------------~v~l~a~iLwlv~myk 80 (105)
T COG4818 29 KFVRFHAMQSFLTFLGLWL---LIILLAFIPYIGWLLSG------------------LVGLAAFILWLVCMYK 80 (105)
T ss_pred cceeehhHHHHHHHHHHHH---HHHHHHHhhhhHHHHHh------------------HHHHHHHHHHHHHHHH
Confidence 3555567788876665433 33335578888887753 2334456899999984
No 11
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=27.89 E-value=21 Score=28.79 Aligned_cols=14 Identities=21% Similarity=0.733 Sum_probs=11.4
Q ss_pred HHhhchhhhchhhH
Q psy1741 251 IEHNFPYFLGFGLT 264 (333)
Q Consensus 251 ~E~~WaYFlGFG~p 264 (333)
+|+.|||+-||-.|
T Consensus 64 lE~~WAF~QGf~~~ 77 (77)
T PF12404_consen 64 LESQWAFYQGFRTP 77 (77)
T ss_pred HHHhhHHHhcccCC
Confidence 58889999999654
No 12
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=24.74 E-value=1.1e+03 Score=26.97 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1741 130 YWTWINLVLSWTFNALWVLPLFTLSKVINSLWFQDIA 166 (333)
Q Consensus 130 ~~~~l~~~l~~~f~~lWvlPly~lS~ilNs~Wf~dIA 166 (333)
...|...++..+.-++|..|+-.+..+.|---..+.-
T Consensus 411 ~k~~~~ni~~il~II~w~~pVa~v~~i~Nl~~l~~~~ 447 (827)
T COG5594 411 FKRISANILFILLIILWAFPVAFVGTISNLNTLSSLW 447 (827)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHhhhh
Confidence 3456667888888999999999999999875544433
No 13
>PF10233 Cg6151-P: Uncharacterized conserved protein CG6151-P; InterPro: IPR019365 This is a family of small, less than 200 residue long, proteins which are conserved from fungi to humans. The function of these proteins are unknown. The entry contains Golgi membrane proteins involved in vesicular trafficking that belong to the TVP18 family and the calcium channel flower protein from Drosophila. The flower proteins are calcium channels that regulates synaptic endocytosis and hence couples exo- with endocytosis. Isoform A and isoform B are mainly required in the nervous system and necessary in photoreceptor cells [].
Probab=22.81 E-value=80 Score=27.09 Aligned_cols=40 Identities=8% Similarity=0.100 Sum_probs=29.2
Q ss_pred chHHHHHHHHhhc---hhhhchhhHH-HHHHhhccchhhhccch
Q psy1741 243 ELHRRLTFIEHNF---PYFLGFGLTL-AVLTHVCSSYVIRQDIL 282 (333)
Q Consensus 243 ~L~~Rl~~~E~~W---aYFlGFG~p~-tllt~~~~s~~v~~~~~ 282 (333)
+++++++.+++|| +.|.|.+.+. ..++.-.+|.+.++.+|
T Consensus 55 ~f~~~i~k~~~n~~Ra~~Y~~maiv~~isl~~~~tSLi~~av~f 98 (113)
T PF10233_consen 55 KFDDFIRKFSTNWMRAALYCVMAIVPWISLCFGATSLIGSAVFF 98 (113)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6778888888888 5788888776 55555557777777733
No 14
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.08 E-value=2.8e+02 Score=23.31 Aligned_cols=8 Identities=38% Similarity=0.746 Sum_probs=4.2
Q ss_pred HHHHHHHH
Q psy1741 106 HILLPFLL 113 (333)
Q Consensus 106 ~~l~P~l~ 113 (333)
.+++|++.
T Consensus 51 ~~v~pil~ 58 (100)
T TIGR02230 51 SVAIPTLL 58 (100)
T ss_pred HHHHHHHH
Confidence 44556554
Done!