Query psy1741
Match_columns 333
No_of_seqs 98 out of 108
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 21:47:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tx3_A Uncharacterized protein 98.8 1.2E-07 4E-12 88.5 17.3 185 78-272 25-221 (249)
2 3vr8_D Succinate dehydrogenase 31.9 2.3E+02 0.0077 24.5 8.6 49 188-236 84-142 (156)
3 1pp5_A Microcin J25; lariat, p 14.2 18 0.00061 22.2 -1.4 11 256-266 8-18 (26)
4 2h88_D Succinate dehydrogenase 13.2 4.9E+02 0.017 20.4 9.0 50 187-236 34-89 (103)
5 3l2c_A Forkhead box protein O4 11.3 2.3E+02 0.0079 22.8 3.9 35 218-260 29-63 (110)
6 3bpy_A FORK head domain, forkh 10.4 2.7E+02 0.0094 21.3 3.9 35 218-260 10-44 (85)
7 1vtn_C HNF-3/FORK head DNA-rec 9.6 2.6E+02 0.0088 22.2 3.6 35 218-260 8-42 (102)
8 3coa_C Forkhead box protein O1 9.0 2.8E+02 0.0094 22.7 3.6 37 218-262 16-52 (117)
9 2hdc_A Protein (transcription 8.7 2.6E+02 0.0089 22.0 3.3 35 218-260 7-41 (97)
10 1v54_L VIIIA, cytochrome C oxi 8.7 1.4E+02 0.0049 20.7 1.5 27 242-268 13-40 (47)
No 1
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=98.84 E-value=1.2e-07 Score=88.45 Aligned_cols=185 Identities=18% Similarity=0.239 Sum_probs=127.5
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHH-HHHHHHH---HH
Q psy1741 78 EENKVWKRTVQCCLLNGGVFCGSILLFDHILLPFLLMILRLILGSSSTYTQFYWTWINLVLSWTFNA-LWVLPLF---TL 153 (333)
Q Consensus 78 ~~~~v~~r~~qc~lLNg~vFl~SIlif~~~l~P~l~~~l~~~~g~~~~~~~~~~~~l~~~l~~~f~~-lWvlPly---~l 153 (333)
.+|++++=++.-.++|.++|.+....+-.-+...+.+..+. -+ +-.+|++..+..+..+ +-+.-.| .+
T Consensus 25 ~~p~lr~~vl~Pllinl~L~~~~~~~~~~~~~~~i~~~~~~----lp----~Wl~wl~~ll~~l~~~~~lll~~~lf~~v 96 (249)
T 3tx3_A 25 RTKGLRRYVVVPILTNLILFSLAFTWLYGEVDYWLNRFMSW----LP----DFFQWLEFILWPLAVITIIALFSFIFSTI 96 (249)
T ss_dssp TSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CC----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999999876666544422222222211110 00 1114444333333211 1111112 35
Q ss_pred HHHHHHHhHHHHHHHHHHHcCCCCCCc-------chhHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHH
Q psy1741 154 SKVINSLWFQDIADSAYRYTQGRPHHF-------TSLSKLLADTLFSLLIQSLFLVQTMLVSK-LPLYLLSDSIGLIHMC 225 (333)
Q Consensus 154 S~ilNs~Wf~dIA~~a~~~~~~~p~~~-------~svs~~iad~ly~vLl~~~Fllq~~lv~~-iPip~IG~~l~fl~ms 225 (333)
+-++.+-++.++|++.-+...|+|.+. ..+.+++.|++-.+.......+-..++++ +| .+|+++.++.-+
T Consensus 97 a~~IaapF~~~LAE~VE~~l~g~~~~~~~~~~~~~~l~r~l~~~l~~l~~~l~~~l~ll~L~f~IP--~vg~vl~~~~~~ 174 (249)
T 3tx3_A 97 MHLIAAPFNGLLAEKVERYESGESLGDEGFLGLFKDIPRTLKREMQKLMYYIPRALGFFLLSLVIP--VIGQVLWYIFVC 174 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCTTCSSGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHST--THHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHH
Confidence 566778899999999877666654432 23457888888888877777777778888 89 799999999999
Q ss_pred HHHHHhhcceeeecCCcchHHHHHHHHhhchhhhchhhHHHHHHhhc
Q psy1741 226 LLYSLYAYEYKWYNQGWELHRRLTFIEHNFPYFLGFGLTLAVLTHVC 272 (333)
Q Consensus 226 ~LyS~YcFEYkW~~~g~~L~~Rl~~~E~~WaYFlGFG~p~tllt~~~ 272 (333)
|+.+.=-+||-..++|++..+|.+...+|-+-..|||.+.++++..+
T Consensus 175 ~~lg~ey~d~~~~r~~~~~~~~~~~lr~~r~~~~~fG~~~~ll~~IP 221 (249)
T 3tx3_A 175 WMMSIQYLDYPFDNHKLSFPRMRSELHQQRSKTLGFGFGVTVLTMIP 221 (249)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988774
No 2
>3vr8_D Succinate dehydrogenase [ubiquinone] cytochrome B subunit, mitochondrial; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_D*
Probab=31.93 E-value=2.3e+02 Score=24.51 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=33.8
Q ss_pred HHHHHHHHHH--HHHHHHHHHHhcccccchHHH--------HHHHHHHHHHHHhhccee
Q psy1741 188 ADTLFSLLIQ--SLFLVQTMLVSKLPLYLLSDS--------IGLIHMCLLYSLYAYEYK 236 (333)
Q Consensus 188 ad~ly~vLl~--~~Fllq~~lv~~iPip~IG~~--------l~fl~ms~LyS~YcFEYk 236 (333)
.|.+..+.+. +-.=+|+++..++|--..|+. ++.....-++.+|.|||.
T Consensus 84 lD~lLa~al~~H~h~GfqsvI~DYVp~rv~g~~~~K~A~~lL~~~s~~tl~GLy~f~t~ 142 (156)
T 3vr8_D 84 MDLCLALALTLHVHWGVWGVVNDYGRPFVLGDTLAAAVRVGAYIFTACLLAGLLYFNEH 142 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhhhhheecchhhcCchHHHHHHHHHHHHHHHHHHHheEeeec
Confidence 5665554443 345569999999985445553 566677788999999963
No 3
>1pp5_A Microcin J25; lariat, protoknot, backbone-sidechain amide linkage, structu genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: j.5.1.1 PDB: 1q71_A
Probab=14.20 E-value=18 Score=22.16 Aligned_cols=11 Identities=36% Similarity=0.999 Sum_probs=8.8
Q ss_pred hhhhchhhHHH
Q psy1741 256 PYFLGFGLTLA 266 (333)
Q Consensus 256 aYFlGFG~p~t 266 (333)
-||.|.|+|.+
T Consensus 8 eyfvgigtpis 18 (26)
T 1pp5_A 8 EYFVGIGTPIS 18 (26)
T ss_dssp CCCSSSSCCCS
T ss_pred ceeEecCCCeE
Confidence 38999999864
No 4
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=13.15 E-value=4.9e+02 Score=20.43 Aligned_cols=50 Identities=6% Similarity=0.032 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHhcccccchHH----HHHHHHHHHHHHHhhccee
Q psy1741 187 LADTLFSLLIQSL--FLVQTMLVSKLPLYLLSD----SIGLIHMCLLYSLYAYEYK 236 (333)
Q Consensus 187 iad~ly~vLl~~~--Fllq~~lv~~iPip~IG~----~l~fl~ms~LyS~YcFEYk 236 (333)
+.|.+..+.+..- .=+|+++..++|-+..+. .+.++-..-++.+|.|||.
T Consensus 34 v~d~~l~~~l~~H~~~G~q~vI~DYv~~~~~~~~~~~~~~~~s~~t~~Gl~~~~~~ 89 (103)
T 2h88_D 34 AVDYSLAAALTLHGHWGLGQVITDYVHGDTPIKVANTGLYVLSAITFTGLCYFNYY 89 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCeeeecccccchHHHHHHHHHHHHHHHHHHHHheeeec
Confidence 4566555444433 346999999998543333 3556666778999999986
No 5
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=11.27 E-value=2.3e+02 Score=22.82 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhcceeeecCCcchHHHHHHHHhhchhhhc
Q psy1741 218 SIGLIHMCLLYSLYAYEYKWYNQGWELHRRLTFIEHNFPYFLG 260 (333)
Q Consensus 218 ~l~fl~ms~LyS~YcFEYkW~~~g~~L~~Rl~~~E~~WaYFlG 260 (333)
...++.|++..| -.+..+|.+=-++|++++|||-.
T Consensus 29 Y~~LI~~AI~~s--------p~~~LtL~eIY~~I~~~fPyyr~ 63 (110)
T 3l2c_A 29 YAELISQAIESA--------PEKRLTLAQIYEWMVRTVPYFKD 63 (110)
T ss_dssp HHHHHHHHHHHS--------TTSCBCHHHHHHHHHHHCGGGTT
T ss_pred HHHHHHHHHHhC--------CccCcCHHHHHHHHHHhCchhhc
Confidence 455666666654 34568999999999999999964
No 6
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=10.41 E-value=2.7e+02 Score=21.28 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhcceeeecCCcchHHHHHHHHhhchhhhc
Q psy1741 218 SIGLIHMCLLYSLYAYEYKWYNQGWELHRRLTFIEHNFPYFLG 260 (333)
Q Consensus 218 ~l~fl~ms~LyS~YcFEYkW~~~g~~L~~Rl~~~E~~WaYFlG 260 (333)
...++.|++..| -.+..+|.+=-++|++++|||-.
T Consensus 10 Y~~LI~~Ai~~s--------p~~~ltL~eIY~~i~~~fpyy~~ 44 (85)
T 3bpy_A 10 YAELISQAIESA--------PEKRLTLAQIYEWMVRTVPYFKD 44 (85)
T ss_dssp HHHHHHHHHHHS--------TTSCBCHHHHHHHHHHHCGGGTT
T ss_pred HHHHHHHHHHhC--------CcCCccHHHHHHHHHHhCcchhc
Confidence 455666666654 34458999999999999999964
No 7
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=9.59 E-value=2.6e+02 Score=22.22 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhcceeeecCCcchHHHHHHHHhhchhhhc
Q psy1741 218 SIGLIHMCLLYSLYAYEYKWYNQGWELHRRLTFIEHNFPYFLG 260 (333)
Q Consensus 218 ~l~fl~ms~LyS~YcFEYkW~~~g~~L~~Rl~~~E~~WaYFlG 260 (333)
...++.|++..| -.+..+|.+=-++|++++|||-.
T Consensus 8 Y~~LI~~AI~~s--------p~~~LtL~eIY~~I~~~fpyyr~ 42 (102)
T 1vtn_C 8 YISLITMAIQQA--------PGKMLTLSEIYQWIMDLFPYYRE 42 (102)
T ss_dssp HHHHHHHHHHTS--------TTSCBCHHHHHHHHHHHCGGGGS
T ss_pred HHHHHHHHHHhC--------CCCCCcHHHHHHHHHHcCCcccc
Confidence 456777777766 45679999999999999999964
No 8
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=8.95 E-value=2.8e+02 Score=22.68 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhcceeeecCCcchHHHHHHHHhhchhhhchh
Q psy1741 218 SIGLIHMCLLYSLYAYEYKWYNQGWELHRRLTFIEHNFPYFLGFG 262 (333)
Q Consensus 218 ~l~fl~ms~LyS~YcFEYkW~~~g~~L~~Rl~~~E~~WaYFlGFG 262 (333)
...++.|++..| -.+.++|.+=-++|++|+|||-.=|
T Consensus 16 Ya~LI~~AI~~s--------p~~~LTL~eIY~~I~~~fPyyr~~~ 52 (117)
T 3coa_C 16 YADLITKAIESS--------AEKRLTLSQIYEWMVKSVPYFKDKG 52 (117)
T ss_dssp HHHHHHHHHHTS--------TTSCBCHHHHHHHHHHHCGGGTTCC
T ss_pred HHHHHHHHHHhC--------CCCCccHHHHHHHHHHhCcccccCC
Confidence 456666777654 2457899999999999999997543
No 9
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=8.71 E-value=2.6e+02 Score=21.99 Aligned_cols=35 Identities=34% Similarity=0.530 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhcceeeecCCcchHHHHHHHHhhchhhhc
Q psy1741 218 SIGLIHMCLLYSLYAYEYKWYNQGWELHRRLTFIEHNFPYFLG 260 (333)
Q Consensus 218 ~l~fl~ms~LyS~YcFEYkW~~~g~~L~~Rl~~~E~~WaYFlG 260 (333)
...++.|++..| -.+..+|.+=-++|++|+|||-.
T Consensus 7 Y~~LI~~AI~~s--------p~~~ltL~eIY~~i~~~fpyyr~ 41 (97)
T 2hdc_A 7 YIALITMAILQS--------PQKKLTLSGICEFISNRFPYYRE 41 (97)
T ss_dssp HHHHHHHHHHTC--------TTTCBCHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHhC--------CCCCCCHHHHHHHHHHhchhhcc
Confidence 456777777766 45689999999999999999974
No 10
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=8.70 E-value=1.4e+02 Score=20.70 Aligned_cols=27 Identities=11% Similarity=0.402 Sum_probs=15.6
Q ss_pred cchHHHHHHHHhhchhh-hchhhHHHHH
Q psy1741 242 WELHRRLTFIEHNFPYF-LGFGLTLAVL 268 (333)
Q Consensus 242 ~~L~~Rl~~~E~~WaYF-lGFG~p~tll 268 (333)
.+.+.|-.+.-.-|.|| .|||.|..+.
T Consensus 13 F~~~nk~~~~~~~~~f~g~GF~~PF~i~ 40 (47)
T 1v54_L 13 FSVENKWRLLAMMTLFFGSGFAAPFFIV 40 (47)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHhHHHHH
Confidence 34445555555666755 4677776543
Done!