RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1741
(333 letters)
>gnl|CDD|219354 pfam07264, EI24, Etoposide-induced protein 2.4 (EI24). This family
contains a number of eukaryotic etoposide-induced 2.4
(EI24) proteins approximately 350 residues long as well
as bacterial CysZ proteins (formerly known as DUF540).
In cells treated with the cytotoxic drug etoposide, EI24
is induced by p53. It has been suggested to play an
important role in negative cell growth control.
Length = 205
Score = 109 bits (276), Expect = 8e-29
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 10/195 (5%)
Query: 81 KVWKRTVQCCLLNGGVFCGSILLFDHILLPFLLMILRLILGSSSTYTQFYWTWINLVLSW 140
++ + + LLN +F G + +L P L +L L+ ++ + + L++
Sbjct: 12 RLRRLVLLPLLLNLLLFAGLLYFLFSLLGPLLDALLSLLWLGWLSWLLWILAVLLLLV-- 69
Query: 141 TFNALWVLPLFTLSKVINSLWFQDIADSAYR--YTQGRPHHFTSLSKLLADTLFSLLIQS 198
LW L + S + W D+A+ + Y P SL + LAD+L LL+
Sbjct: 70 ---LLWFLFVVVASLIAAPFWTPDLAEKVEKRHYPDLEPALGGSLPRSLADSLKKLLLFL 126
Query: 199 LFLVQTMLVSKLPLYLLSDSIGLIHMCLLYS-LYAYEYKWYNQGWELHRRLTFIEHNFPY 257
LFL+ + + +P+ + + + LL + L +EY Y R + N Y
Sbjct: 127 LFLLLLLPLYFIPV--VGLVLAPVLWFLLNAWLLGFEYLDYAADRSFEERRALLRRNRAY 184
Query: 258 FLGFGLTLAVLTHVC 272
FLGFGL LA+L +
Sbjct: 185 FLGFGLLLALLLSIP 199
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is
a family of proteins conserved in yeasts. The function
is not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 31.8 bits (72), Expect = 0.56
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 35 KKKEFESPSHQKTQSSSVP-------EELKRKKKEFESPSHQKTQSSSVPE---ENKVWK 84
+ E+P + ++SSS E KKK S Q+ S V E E++
Sbjct: 436 PPRASETPEQETSRSSSEVSLDPHQSELKSEKKKARPEVSKQRFPSRDVWEDAPESQELV 495
Query: 85 RTVQ 88
T +
Sbjct: 496 TTEE 499
>gnl|CDD|219047 pfam06473, FGF-BP1, FGF binding protein 1 (FGF-BP1). This family
consists of several mammalian FGF binding protein 1.
Fibroblast growth factors (FGFs) play important roles
during fetal and embryonic development. Fibroblast
growth factor-binding protein (FGF-BP) 1 is a secreted
protein that can bind fibroblast growth factors (FGFs) 1
and 2.
Length = 229
Score = 31.0 bits (70), Expect = 0.70
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 27 KERSELKRKKKEFESPSHQKTQSSSVPEELKRKKKEFESPSHQKTQSSSVPE 78
E SE R++ SPS EE K KK + KT+++ +PE
Sbjct: 139 LEGSEGPRQEPRSPSPSEHDKGKEKSSEEKKLKKDSNSGVT--KTKATKLPE 188
Score = 27.5 bits (61), Expect = 8.1
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 30 SELKRKKKEFESP--------------SHQKTQSSSV-PEELKRKKKEFESPSHQKTQSS 74
EL+++K E P SH K +S++ E R++ SPS
Sbjct: 103 RELRKQKNACEDPKVLKTRVCRKAFPESHLKQVTSTLEGSEGPRQEPRSPSPSEHDKGKE 162
Query: 75 SVPEENKVWK 84
EE K+ K
Sbjct: 163 KSSEEKKLKK 172
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 28.5 bits (64), Expect = 1.2
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 25 KLKERSEL--KRKKKEFESPSHQKTQSSSVPEELKRKKKEF----ESPSHQKTQSSSVPE 78
KLK + K+KKK+ + ++ + EE K + E +
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDG 70
Query: 79 ENK 81
N
Sbjct: 71 MNL 73
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 30.0 bits (68), Expect = 1.5
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 3 HALLKGILDSLKGIIIIFRLDNKLKERSELKRKKKEFES-PSHQKTQSSSVPEELKRKKK 61
LLK L+ + K K++ + K+ KK + S + T SS+VP EL
Sbjct: 169 VELLKARLEEERA---------KKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAG 219
Query: 62 EFESPSHQKTQSSSVPEENK 81
+ K + S P+ K
Sbjct: 220 QVGEAKKLKKKRSIAPDNEK 239
>gnl|CDD|148759 pfam07334, IFP_35_N, Interferon-induced 35 kDa protein (IFP 35)
N-terminus. This family represents the N-terminus of
interferon-induced 35 kDa protein (IFP 35)
(approximately 80 residues long), which contains a
leucine zipper motif in an alpha helical configuration.
This family also includes N-myc-interactor (Nmi), a
homologous interferon-induced protein.
Length = 76
Score = 27.6 bits (61), Expect = 2.4
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 27 KERSELKRKKKEFESPSHQKTQSSSVPEELKRKKKEFESPS--HQKTQSSSVP 77
KE +LK + ++ E+ Q T+ + E++ K +F S +Q S+V
Sbjct: 7 KENIQLKEEIQKLEAELQQLTREFQIKEDIPETKIKFTSVEVPEDDSQFSNVS 59
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 29.4 bits (66), Expect = 3.0
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 21 RLDNKLKERSELKRKKKEFESPSHQKTQSS----SVPEELKRKKKEFESPSHQKTQ 72
+ + KE + K+KKKE Q+ +++ + EE K + + ++ +
Sbjct: 288 KEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQEERKEQLAKLRKEEKEREK 343
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 28.4 bits (64), Expect = 4.8
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 20 FRLDNKLKERS-ELKRKKKEFESPSHQKTQSSSVPEELKRKKKEFESPSHQKTQSSSVPE 78
R KLK+ E+ K K+ E + + S E+L KK E + + ++ E
Sbjct: 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT---EIAEAEKKLE 263
Query: 79 ENKVWKR 85
+ + +
Sbjct: 264 QCRGFTF 270
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 28.5 bits (64), Expect = 5.9
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 23 DNKLKERSELKRKKKEFESPSHQKTQSSSVPEELKRKKKEFES 65
+ L+ EL + E E ++ + E+LK + +E E
Sbjct: 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
Score = 28.1 bits (63), Expect = 9.2
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 6 LKGILDSLKGIIIIFRLDNKLKERSELKRKKKEFESPSHQKTQSSSVPEELKRKKKEFES 65
LK L LKG I L +L++ ELK+K E E + EEL KE E
Sbjct: 530 LKEKLIKLKGEIK--SLKKELEKLEELKKKLAELEKKLD------ELEEELAELLKELEE 581
>gnl|CDD|219835 pfam08426, ICE2, ICE2. ICE2 is a fungal ER protein which has been
shown to play an important role in forming/maintaining
the cortical ER. It has also bee identified as a protein
which is necessary for nuclear inner membrane targeting.
Length = 406
Score = 28.5 bits (64), Expect = 6.1
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 101 ILLFDHILLPFLLMIL----RLILGSSSTYTQFYWTWINLVLSWTFNALWVLPLFTL 153
+ H ++P LL++ + + + + + LV W + P+FTL
Sbjct: 62 LYYSQHFIIPSLLILFLSYFSNDELNKKNWVLYLFYYSGLVEPWDTLLSYSTPVFTL 118
>gnl|CDD|225528 COG2981, CysZ, Uncharacterized protein involved in cysteine
biosynthesis [Amino acid transport and metabolism].
Length = 250
Score = 28.1 bits (63), Expect = 6.3
Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 28/192 (14%)
Query: 107 ILLPFLLMILRLILGSSSTYTQFYWTWINLVLS-------------WTFNALWVLPLF-- 151
++LP LL IL L G WI+ ++ W L +L +F
Sbjct: 28 VILPLLLNIL-LWGGLFWLLFSQALPWIDTLMPGIPDWLGWLSYLLWILAVLLLLLVFAF 86
Query: 152 ---TLSKVINSLWFQDIADSAYRYTQGRPHHFTSLSKLLADTLFSLL--IQSLFLVQTML 206
T++ +I + + +A+ + G L+ D +L + L V
Sbjct: 87 LFSTVANLIAAPFNGLLAEKVEKRLTGETPPDPGGVGLMKDIPRALAREWKKLGYVLPGA 146
Query: 207 VSKLPLYLLSDSIGLIHMCLLYSLYAY-------EYKWYNQGWELHRRLTFIEHNFPYFL 259
+ L L + + + A+ +Y N +
Sbjct: 147 IVLLLLLFVPGVGQTVAPVAWFLFTAWMLAIQYFDYPADNHKVPFAEMRLLLRQYRVTVF 206
Query: 260 GFGLTLAVLTHV 271
GFGL +A+ T +
Sbjct: 207 GFGLVVALFTAI 218
>gnl|CDD|153274 cd07590, BAR_Bin3, The Bin/Amphiphysin/Rvs (BAR) domain of Bridging
integrator 3. BAR domains are dimerization, lipid
binding and curvature sensing modules found in many
different proteins with diverse functions. Bridging
integrator 3 (Bin3) is widely expressed in many tissues
except in the brain. It plays roles in regulating
filamentous actin localization and in cell division. In
humans, the Bin3 gene is located in chromosome 8p21.3, a
region that is implicated in cancer suppression.
Homozygous inactivation of the Bin3 gene in mice led to
the development of cataracts and an increased likelihood
of lymphomas during aging, suggesting a role for Bin3 in
lens development and cancer suppression. BAR domains
form dimers that bind to membranes, induce membrane
bending and curvature, and may also be involved in
protein-protein interactions.
Length = 225
Score = 27.3 bits (61), Expect = 9.9
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 7 KGILDSLKGIIIIF--------RLDNKLKE--RSELKRKK-KEFESPSHQKTQSSSVPEE 55
K ++ LK + +F R + L+E R + K +K E E + +
Sbjct: 94 KTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKA 153
Query: 56 LKRKKKEFESPSHQ 69
L + +FE + +
Sbjct: 154 LAAARADFEKQNIK 167
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.139 0.430
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,844,344
Number of extensions: 1613533
Number of successful extensions: 2653
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2639
Number of HSP's successfully gapped: 82
Length of query: 333
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 236
Effective length of database: 6,635,264
Effective search space: 1565922304
Effective search space used: 1565922304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.5 bits)