RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1741
(333 letters)
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural
genomics, PSI-biology, NEW YORK consortium on MEM
protein structure, nycomps; HET: LDA; 2.30A {Idiomarina
loihiensis}
Length = 249
Score = 72.4 bits (177), Expect = 7e-15
Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 10/195 (5%)
Query: 81 KVWKRTVQCCLLNGGVFCGSILLFDHILLPFLLMILRLILGSSSTYTQFYWTWINLVLSW 140
+ + V L N +F + + +L + + Q+ + +
Sbjct: 28 GLRRYVVVPILTNLILFSLAFTWLYGEVDYWL----NRFMSWLPDFFQWLEFILWPLAVI 83
Query: 141 TFNALWVLPLFTLSKVINSLWFQDIADSAYRYTQGRPHHFTSLSKLLADTL------FSL 194
T AL+ T+ +I + + +A+ RY G L D
Sbjct: 84 TIIALFSFIFSTIMHLIAAPFNGLLAEKVERYESGESLGDEGFLGLFKDIPRTLKREMQK 143
Query: 195 LIQSLFLVQTMLVSKLPLYLLSDSIGLIHMCLLYSLYAYEYKWYNQGWELHRRLTFIEHN 254
L+ + + L + ++ + I +C + S+ +Y + N R + +
Sbjct: 144 LMYYIPRALGFFLLSLVIPVIGQVLWYIFVCWMMSIQYLDYPFDNHKLSFPRMRSELHQQ 203
Query: 255 FPYFLGFGLTLAVLT 269
LGFG + VLT
Sbjct: 204 RSKTLGFGFGVTVLT 218
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.005
Identities = 36/231 (15%), Positives = 67/231 (29%), Gaps = 58/231 (25%)
Query: 7 KGILDSLKGIIIIFRLDNKLKERSELKRKKKEFES-PSHQKTQSSSVPEELKRK------ 59
K + D K I+ +D+ + + + + F + S Q+ EE+ R
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 60 ---KKEFESPS---------HQKTQSS-------SVPEENKVWKRTVQCCLL----NGGV 96
K E PS + + +V K ++ LL V
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQALLELRPAKNV 153
Query: 97 F------CG-SILLFDHILLPFLLMILRLILGSSSTYTQFYWT--WINLVLSWTFNALWV 147
G + + L + S + + W+NL + + +
Sbjct: 154 LIDGVLGSGKTWV---------ALDVCL----SYKVQCKMDFKIFWLNLKNCNSPETV-L 199
Query: 148 LPLFTLSKVINSLWFQDIADSAYRYTQGRPHHFTSLSKLLADTLF--SLLI 196
L L I+ W +D + L +LL + LL+
Sbjct: 200 EMLQKLLYQIDPNWTSR-SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Score = 31.0 bits (69), Expect = 0.62
Identities = 21/167 (12%), Positives = 39/167 (23%), Gaps = 52/167 (31%)
Query: 161 WFQDIADSAYRYTQGRPHHFTSLSKLLADTLFSLLIQSL-FLVQTMLVSKLPLYLLSDSI 219
++ I HH ++ TLF ++ FL Q + +
Sbjct: 473 FYSHIG-----------HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 220 GLIHMCLLYSLYAYEYKWYNQGWELHRRLTFIEHNFPYFLGFGLTLAVLTHVCSSYVIRQ 279
+ Y Y + N + R + I FL +I
Sbjct: 522 NTLQQLKFYKPYICD----NDP-KYERLVNAILD----FL----------PKIEENLICS 562
Query: 280 DILKTSSLFHLLFIILLLCCSEYQLKLFSPVIAISNAVFNHTIRPAQ 326
++ L + A+F + Q
Sbjct: 563 K-----------------YTDLLRIALMAE----DEAIFEEAHKQVQ 588
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.021
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 25/49 (51%)
Query: 278 RQDILKTSSLFHLLFIILLLCCSEYQLKLF----SPVIAISNAVFNHTI 322
+Q + K + LKL+ +P +AI A T+
Sbjct: 19 KQALKKLQA----------------SLKLYADDSAPALAI-KA----TM 46
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence
factor, S active protein, toxin; 3.04A {Streptococcus
pyogenes serotype M1} PDB: 2xny_M
Length = 155
Score = 30.0 bits (66), Expect = 0.60
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 24 NKLKERSELKRKKKEFESPSHQKTQSSSVPEELKRKKKEFES 65
++ R E K K E+ + EEL++ K+ E
Sbjct: 23 QNIRLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALED 64
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN
BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Length = 294
Score = 30.2 bits (68), Expect = 0.77
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 226 LLYSLYAYEYKWYNQGWELHRRLTFIEHNFPYFLG-FG 262
++S++ YEY + I+ + +G FG
Sbjct: 184 TMFSIHMYEYAGGDANTVRSNIDRVIDQDLALVIGEFG 221
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.91
Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 14/61 (22%)
Query: 23 DNKLKERSELKRKKKEFESPSHQKTQSSSVPEELKRKKKEFESPSHQKTQSSSVPEENKV 82
+L+E + ++ E+ K+ +E+ Q Q N++
Sbjct: 95 RKRLQELDAASKVMEQ------------EWREKAKKDLEEWN--QRQSEQVEKNKINNRI 140
Query: 83 W 83
Sbjct: 141 A 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 1.9
Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 49/206 (23%)
Query: 121 GSSSTYTQF--------YWTWINLVLSW-TFNALWVLPLF-TLSKVINSLWFQDIADSAY 170
G++ F Y+ L + T++ L V L ++ ++ L + D+
Sbjct: 152 GNAQLVAIFGGQGNTDDYFE--ELRDLYQTYHVL-VGDLIKFSAETLSEL-IRTTLDAEK 207
Query: 171 RYTQGRPHHFTSLSKLLADTLFSLLIQSLFLVQTMLVSKLPLYLLSDSIGLIHMCLLYSL 230
+TQG + + L + S +L+ ++ +S PL IG+I +
Sbjct: 208 VFTQGLN-----ILEWLENP--SNTPDKDYLL-SIPIS-CPL------IGVIQLA----- 247
Query: 231 YAYEYKWYNQGW---ELHRRL-TFIEHNFPYFLGFGLTLAVLTHVCSSYVIRQDILKTSS 286
Y G+ EL L H GL AV S+ + +
Sbjct: 248 -HYVVTAKLLGFTPGELRSYLKGATGH------SQGLVTAVAIAETDSW---ESFFVSVR 297
Query: 287 LF-HLLFIILLLCCSEYQLKLFSPVI 311
+LF I + C Y P I
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSI 323
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A
{Bacillus}
Length = 345
Score = 29.1 bits (65), Expect = 2.1
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 226 LLYSLYAYEYKWYNQGWELHRRLTFIEHNFPYFLG-FG 262
++S++ YEY + I+ + +G FG
Sbjct: 207 TIFSIHMYEYAGGDANTVRSNIDRVIDQDLALVIGEFG 244
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 27.5 bits (60), Expect = 5.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 33 KRKKKEFESPSHQKTQSSSVPEELKRKKKEFE 64
KKK P K + +VPE LK+K++ F
Sbjct: 17 TLKKKVPAGPKTLKKKVPAVPETLKKKRRNFA 48
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus
pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 27.5 bits (62), Expect = 6.1
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 1 MGHALLKGILDSLKGIIIIFRLDNKLKERSE 31
M A++KG+ + +II + KE +E
Sbjct: 14 MASAIIKGLKQTPHELIISGSSLERSKEIAE 44
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 27.4 bits (61), Expect = 9.6
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 2 GHALLKGILDSLKGIIIIFRLDNKLKERSELKRKKKEFESPSHQKTQSSSVPEELKRKKK 61
G +LK I+ + ++ + ELK+ K E S K L+ K
Sbjct: 876 GWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLH----IGLENKIM 931
Query: 62 EFE 64
+ +
Sbjct: 932 QLQ 934
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.139 0.430
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,846,280
Number of extensions: 266471
Number of successful extensions: 656
Number of sequences better than 10.0: 1
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 16
Length of query: 333
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 239
Effective length of database: 4,077,219
Effective search space: 974455341
Effective search space used: 974455341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.1 bits)