BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17412
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
++A K GN+ F+ G Y A+ Y++A+++ ++ +LY+NRA L L + L DC
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDS 158
D +RLD +K ++ KA + ++ + +A+ ++ P+ + A E VR+
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE-AREGVRNC 124
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 129 QREEAKEYVRQLVEKYPTRRKLAIEQVRDSP---VLYTNRALTLLHLQLYDPVLPDCDKA 185
++ + EY ++ YPT + E V+ P +LY+NRA L L + L DCD
Sbjct: 16 EKNKGNEYFKK--GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTC 73
Query: 186 LRLDEDNMKAHLYKARAMHNLGQREEAK 213
+RLD +K ++ KA + + RE +K
Sbjct: 74 IRLDSKFIKGYIRKAACL--VAMREWSK 99
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A K GN+ F +Y A Y +AI + V YTNRAL L +Q + L DC +
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 106 ALRLDEDNMKAHLY 119
AL LD ++KAH +
Sbjct: 69 ALELDGQSVKAHFF 82
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 143 KYPTRRKLAIEQVRDSP---VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 198
KYP + +P V YTNRAL L +Q + L DC +AL LD ++KAH +
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A K GN+ F +Y A Y +AI + V YTNRAL L +Q + L DC +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEA 133
AL LD ++KAH + + + +EA
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEA 91
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 143 KYPTRRKLAIEQVRDSP---VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199
KYP + +P V YTNRAL L +Q + L DC +AL LD ++KAH +
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 200 ARAMHNLGQREEA 212
+ + +EA
Sbjct: 79 GQCQLEMESYDEA 91
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A+ K GN+ + +EAA+ Y KAIE + V + NRA L Y + DC++
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLV------EKYPTRRKLAIEQVRDSP 159
A+ +D KA+ A+ SL + EA Y ++ + E Y + K+A ++R++P
Sbjct: 72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
AIE + V + NRA L Y + DC++A+ +D KA+ A+ +L +
Sbjct: 38 AIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHV 97
Query: 211 EAKEYIRELVEKYP 224
EA Y ++ +E P
Sbjct: 98 EAVAYYKKALELDP 111
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
D+A K GN+ FQ G Y A+ Y +AI++ LY+NRA L + L DC
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 104 DKALRLDEDNMKAHLYKARAMHSL 127
++ ++L+ +K + KA A+ ++
Sbjct: 74 EECIQLEPTFIKGYTRKAAALEAM 97
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 144 YPTRRKLAIEQVRDSPV---LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200
YP K E ++ +P LY+NRA L + L DC++ ++L+ +K + KA
Sbjct: 32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91
Query: 201 RAMHNLGQREEAKEYIREL 219
A+ E K+Y + +
Sbjct: 92 AAL------EAMKDYTKAM 104
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 21 MNDFMRSVEIDAMRRFEERKARQDI--------ADHFKANGNKAFQSGQYEAALVQYDKA 72
M D + VE+ +E KAR D+ AD K +GN F+ + E A+ QY+ A
Sbjct: 146 MADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMA 205
Query: 73 IEQVRDSPVL-----------------YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 115
I + D + + N A L+ L+ YD + C+ L +E N K
Sbjct: 206 IAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK 265
Query: 116 AHLYKARAMHSLGQREEAKEYVRQLVEKY 144
A + +A LGQ + A++ R+ +KY
Sbjct: 266 ALFRRGKAKAELGQMDSARDDFRK-AQKY 293
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELV 220
+ N A L+ L+ YD + C+ L +E N KA + +A LGQ + A++ R+
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRK-A 290
Query: 221 EKYPTRRKLV 230
+KY K +
Sbjct: 291 QKYAPDDKAI 300
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A+ K N F++ YE A+ Y +AIE + + Y NR+L L + Y L D +
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQ 129
A+ LD+ +K + +A + +LG+
Sbjct: 73 AIELDKKYIKGYYRRAASNMALGK 96
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ 208
AIE + + Y NR+L L + Y L D +A+ LD+ +K + +A + LG+
Sbjct: 39 AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 96
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A+ K N F++ YE A+ Y +AIE + + Y NR+L L + Y L D +
Sbjct: 21 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATR 80
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQ 129
A+ LD+ +K + +A + +LG+
Sbjct: 81 AIELDKKYIKGYYRRAASNMALGK 104
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ 208
AIE + + Y NR+L L + Y L D +A+ LD+ +K + +A + LG+
Sbjct: 47 AIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIELDKKYIKGYYRRAASNMALGK 104
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A+ K N F++ YE A+ Y +AIE + + Y NR+L L + Y L D +
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQ 129
A+ LD+ +K + +A + +LG+
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGK 89
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ 208
AIE + + Y NR+L L + Y L D +A+ LD+ +K + +A + LG+
Sbjct: 32 AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 47 DHFKANGNKAFQSGQYEAALVQYDKAIE---QVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
+ + GN+ F+ G Y AL Y +A+ +D VL+ NRA L L+ YD +
Sbjct: 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEA 88
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEA 133
KA+ D ++KA +++A+ LG+ ++A
Sbjct: 89 SKAIEKDGGDVKALYRRSQALEKLGRLDQA 118
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 156 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
+D VL+ NRA L L+ YD + KA+ D ++KA +++A+ LG+ ++A
Sbjct: 62 QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQA 118
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 50 KANGNKAFQSGQYEAALVQYDKAI-----------EQVRDSPVL----YTNRALTLLHLQ 94
K G F+ G+Y+ AL+QY K + E+ + + L + N A+ L LQ
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR----KL 150
+ + C+KAL LD +N K + A ++ E A+ +++++ YP + +L
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 270
Query: 151 AIEQVR 156
A+ Q R
Sbjct: 271 AVCQQR 276
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 101
RQ A K GN F + + A+ Y AIE + PV Y+N + + + V+
Sbjct: 17 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIE 76
Query: 102 DCDKALRLDEDNMKAHLYKARAMHSLGQREEA 133
KAL + D+ KA L +A A SLG +A
Sbjct: 77 FTTKALEIKPDHSKALLRRASANESLGNFTDA 108
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
AIE + PV Y+N + + + V+ KAL + D+ KA L +A A +LG
Sbjct: 47 AIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFT 106
Query: 211 EA 212
+A
Sbjct: 107 DA 108
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 101
RQ A K GN F + + A+ Y AIE + PV Y+N + + + V+
Sbjct: 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIE 80
Query: 102 DCDKALRLDEDNMKAHLYKARAMHSLGQREEA 133
KAL + D+ KA L +A A SLG +A
Sbjct: 81 FTTKALEIKPDHSKALLRRASANESLGNFTDA 112
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
AIE + PV Y+N + + + V+ KAL + D+ KA L +A A +LG
Sbjct: 51 AIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFT 110
Query: 211 EA 212
+A
Sbjct: 111 DA 112
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 50 KANGNKAFQSGQYEAALVQYDKAI-----------EQVRDSPVL----YTNRALTLLHLQ 94
K G F+ G+Y+ AL+QY K + E+ + + L + N A+ L LQ
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR----KL 150
+ + C+KAL LD +N K + A ++ E A+ +++++ YP + +L
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 270
Query: 151 AIEQVR 156
A+ Q R
Sbjct: 271 AVCQQR 276
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR 108
K GN F+ G Y A+ YD+ I +PV Y+N+A+ L+ L Y + C + LR
Sbjct: 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
D+ H + G K +GQ AL Q+ A++ D+ + Y RA L + LPD
Sbjct: 25 DVEKHLEL-GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 83
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
K ++L D A L + + G+ +EA++ +++++ P+
Sbjct: 84 TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 41/85 (48%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
A++ D+ + Y RA L + LPD K ++L D A L + + G+ +
Sbjct: 52 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLD 111
Query: 211 EAKEYIRELVEKYPTRRKLVENYTQ 235
EA++ +++++ P+ + E +Q
Sbjct: 112 EAEDDFKKVLKSNPSENEEKEAQSQ 136
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%)
Query: 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 115
AF SG Y AA+ DK +E L RA + + D A +L DN +
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212
Query: 116 AHLYKARAMHSLGQREEAKEYVRQLV 141
A + + LG E + VR+ +
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRECL 238
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 22/168 (13%)
Query: 57 FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 116
++ G+YE A+ + A+EQ R+ Y + + + L D K + + ++
Sbjct: 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108
Query: 117 H-----LYKARAMHSLGQREEAKEYV------------RQLVEK--YPTRRKLAIEQVRD 157
H L K R ++ EA+ YV ++ K +P K E ++
Sbjct: 109 HRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168
Query: 158 SPV---LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202
+P Y+NRA L L + + DC+KA+ D + ++A++ KA A
Sbjct: 169 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G + F + A+ Y + I++ + Y+NRA L L + + DC+KA+ D +
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQL 140
++A++ KA A ++ KEY L
Sbjct: 206 FVRAYIRKATAQIAV------KEYASAL 227
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
D+ H + G K +GQ AL Q+ A++ D+ + Y RA L LPD
Sbjct: 25 DVEKHLEL-GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDL 83
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
K ++L D A L + + G+ +EA++ +++++ P+
Sbjct: 84 TKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
A++ D+ + Y RA L LPD K ++L D A L + + G+ +
Sbjct: 52 AVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLD 111
Query: 211 EAKEYIRELVEKYPTRRKLVENYTQ 235
EA++ +++++ P+ + E +Q
Sbjct: 112 EAEDDFKKVLKSNPSENEEKEAQSQ 136
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%)
Query: 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 115
AF SG Y AA+ DK +E L RA + + D A +L DN +
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212
Query: 116 AHLYKARAMHSLGQREEAKEYVRQLV 141
A + + LG E + VR+ +
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRECL 238
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 22/137 (16%)
Query: 27 SVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIE------------ 74
S E+D + E+ A K G F+ G+Y A++QY K +
Sbjct: 256 SWEMDTKEKLEQ-------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKE 308
Query: 75 -QVRDSPVL--YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQRE 131
+ +S +L + N A+ L L+ Y + CDKAL LD N K + A + + E
Sbjct: 309 SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFE 368
Query: 132 EAKEYVRQLVEKYPTRR 148
AK +++E P +
Sbjct: 369 SAKGDFEKVLEVNPQNK 385
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%)
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221
+ N A+ L L+ Y + CDKAL LD N K + A + + E AK +++E
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Query: 222 KYPTRR 227
P +
Sbjct: 380 VNPQNK 385
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 22/137 (16%)
Query: 27 SVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIE------------ 74
S E+D + E+ A K G F+ G+Y A++QY K +
Sbjct: 256 SWEMDTKEKLEQ-------AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE 308
Query: 75 -QVRDSPVL--YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQRE 131
+ +S +L + N A+ L L+ Y + CDKAL LD N K + A + + E
Sbjct: 309 SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFE 368
Query: 132 EAKEYVRQLVEKYPTRR 148
AK +++E P +
Sbjct: 369 SAKGDFEKVLEVNPQNK 385
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%)
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221
+ N A+ L L+ Y + CDKAL LD N K + A + + E AK +++E
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Query: 222 KYPTRR 227
P +
Sbjct: 380 VNPQNK 385
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN ++ G Y+ A+ Y KA+E ++ + N YD + KAL L +
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTR 147
N +A A + G +EA EY ++ +E YP
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN 110
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 11/112 (9%)
Query: 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 180
A + G +EA EY ++ +E YP + + N YD +
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEA-----------WYNLGNAYYKQGDYDEAIE 64
Query: 181 DCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232
KAL L +N +A A + G +EA EY ++ +E YP + +N
Sbjct: 65 YYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQN 116
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 18/112 (16%)
Query: 96 YDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQV 155
YD + KAL L +N +A A + G +EA EY ++ +E YP +
Sbjct: 25 YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE------ 78
Query: 156 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG 207
+ N YD + KAL L +N A A NLG
Sbjct: 79 -----AWYNLGNAYYKQGDYDEAIEYYQKALELYPNN-------AEAKQNLG 118
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
D+ H + G K +GQ AL Q+ A++ D+ + Y RA L LPD
Sbjct: 2 DVEKHLEL-GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDL 60
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
K + L D A L + + G+ +EA++ +++++ P+
Sbjct: 61 TKVIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 103
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
A++ D+ + Y RA L LPD K + L D A L + + G+ +
Sbjct: 29 AVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXDFTAARLQRGHLLLKQGKLD 88
Query: 211 EAKEYIRELVEKYPTRRKLVENYTQ 235
EA++ +++++ P+ ++ E +Q
Sbjct: 89 EAEDDFKKVLKSNPSEQEEKEAESQ 113
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%)
Query: 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 106
+ K GNKA G + AL Y +AI+ + VLY+NR+ Y D K
Sbjct: 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64
Query: 107 LRLDEDNMKAHLYKARAMHSLGQREEAK 134
+ L D K + KA A+ L + EEAK
Sbjct: 65 VDLKPDWGKGYSRKAAALEFLNRFEEAK 92
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN A++ +E A V YDKAIE + Y N+A + + + C+KA+ + +
Sbjct: 15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74
Query: 113 NMKAHLYKARAMHSLG 128
+ A+AM G
Sbjct: 75 TRADYKLIAKAMSRAG 90
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G + F + A+ Y + I++ + Y+NRA L L + + DC+KA+ D +
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQL 140
++A++ KA A ++ KEY L
Sbjct: 71 FVRAYIRKATAQIAV------KEYASAL 92
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 123 AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV---LYTNRALTLLHLQLYDPVL 179
+M + R E KEY + +P K E ++ +P Y+NRA L L + +
Sbjct: 1 SMKAEEARLEGKEYFTK--SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI 58
Query: 180 PDCDKALRLDEDNMKAHLYKARA 202
DC+KA+ D + ++A++ KA A
Sbjct: 59 ADCNKAIEKDPNFVRAYIRKATA 81
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 109
K GN+ F++ +Y+ A+ Y+ A+E +++ PV Y+N + + + V+ KAL L
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALE-LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68
Query: 110 DEDNMKAHLYKARAMHSLGQREEA 133
D K L +A A LG+ +A
Sbjct: 69 KPDYSKVLLRRASANEGLGKFADA 92
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 69 YDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 114
+DKA++ ++ +Y +R LQ YD D DKA LD +N+
Sbjct: 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI 338
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 154 QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
++++ PV Y+N + + + V+ KAL L D K L +A A LG+ +A
Sbjct: 34 ELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADA 92
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN ++ G Y+ A+ Y KA+E ++ + N YD + KAL LD +
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTR 147
N +A A + G +EA EY ++ +E P
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 96 YDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQV 155
YD + KAL LD +N +A A + G +EA EY ++ +E P +
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------ 78
Query: 156 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG 207
+ N YD + KAL LD +N A A NLG
Sbjct: 79 -----AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAKQNLG 118
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 11/112 (9%)
Query: 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 180
A + G +EA EY ++ +E P + + N YD +
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEA-----------WYNLGNAYYKQGDYDEAIE 64
Query: 181 DCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232
KAL LD +N +A A + G +EA EY ++ +E P + +N
Sbjct: 65 YYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 11/165 (6%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
G YE A + KAIE+ ++ + Y N A L + + L DKAL LD A+ Y
Sbjct: 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAY-Y 95
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
A ++ + +E KE + + EK A+ ++ L+ L+ L+ L
Sbjct: 96 GAGNVYVV--KEMYKE-AKDMFEK-------ALRAGMENGDLFYMLGTVLVKLEQPKLAL 145
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
P +A+ L+E++ +A + N G +EA + E+ P
Sbjct: 146 PYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
+ A+ +K GN ++ G Y+ A+ Y KA+E ++ + N Y +
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRK 149
KAL LD +N KA + A + G ++A E ++ +E P K
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAK 112
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
Query: 105 KALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTN 164
KAL LD +N A A + G ++A EY ++ +E P K +
Sbjct: 34 KALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAK-----------AWYR 82
Query: 165 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG 207
R Y + D KAL LD +N A+A NLG
Sbjct: 83 RGNAYYKQGDYQKAIEDYQKALELDPNN-------AKAKQNLG 118
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN ++ G Y+ A+ Y KA+E S + N YD + KAL LD
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVE 142
+ +A A + G +EA EY ++ +E
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 96 YDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQV 155
YD + KAL LD + +A A + G +EA EY ++ +E P
Sbjct: 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---------- 66
Query: 156 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
R + Y N YD + KAL LD + +A A + G +EA EY
Sbjct: 67 RSAEAWY-NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125
Query: 216 IRELVE 221
++ +E
Sbjct: 126 YQKALE 131
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN A++ ++ AL YDKA E + TN+A Y+ C+KA+ + +
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 113 NMKAHLYKARAMHSLG 128
N + + A+A +G
Sbjct: 71 NREDYRQIAKAYARIG 86
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN A++ ++ AL YDKA E + TN+A Y+ C+KA+ + +
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 113 NMKAHLYKARAMHSLG 128
N + + A+A +G
Sbjct: 71 NREDYRQIAKAYARIG 86
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-------------PVLYT---NRAL 88
I++ K GN F+S +E A+ +Y K + V S PV + N
Sbjct: 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGA 281
Query: 89 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR 148
L + + + C +AL +D N KA +A+ L + ++A +++ E P +
Sbjct: 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341
Query: 149 KLAIEQVR 156
+ E ++
Sbjct: 342 AIQAELLK 349
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN A++ ++ AL YDKA E + N+A Y+ C+KA+ + +
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 113 N-----MKAHLYKARAMHSLGQREEAKEYV 137
N M A+ Y AR +S + E+ K+ +
Sbjct: 71 NREDYRMIAYAY-ARIGNSYFKEEKYKDAI 99
>pdb|2VKJ|A Chain A, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
pdb|2VKJ|B Chain B, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
pdb|2VKO|A Chain A, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
pdb|2VKO|B Chain B, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
pdb|2VKO|C Chain C, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
pdb|2VKO|D Chain D, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
Length = 106
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 27 SVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAI 73
++I+ M +E+KAR IA+ G F++ Y ALV ++KA+
Sbjct: 39 GLKIEGMELLKEKKARSLIAE-----GKDLFETANYGEALVFFEKAL 80
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN ++ G Y+ A+ Y KA+E ++ + N YD + KAL LD +
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 113 NMKA 116
N +A
Sbjct: 76 NAEA 79
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 175 YDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234
YD + KAL LD +N +A A + G +EA EY ++ +E P + +N
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84
Query: 235 QA 236
A
Sbjct: 85 NA 86
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 96 YDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTR 147
YD + KAL LD +N +A A + G +EA EY ++ +E P
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 50 KANGNKAFQSGQYEAALVQYDKAI------EQVRDSPVLYTNRALTL-LHLQL------- 95
K GN+ F+ + A+V+Y +A+ E+ D +L + + + +L L
Sbjct: 42 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101
Query: 96 --YDPVLPDCDKALRLDEDNMKAHLYK-ARAMHSLGQREEAKE 135
Y + K L++D++N+KA LYK A G EEAKE
Sbjct: 102 KDYPKAIDHASKVLKIDKNNVKA-LYKLGVANMYFGFLEEAKE 143
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 23/155 (14%)
Query: 85 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKY 144
++A+ LL Q+YD D D AL L +K G + E + + +
Sbjct: 25 SQAVMLLE-QVYDADAFDVDVALHLGIAYVKT-----------GAVDRGTELLERSLADA 72
Query: 145 PTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 204
P K+A T LT + +Q YD +P K + N A+
Sbjct: 73 PDNVKVA-----------TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121
Query: 205 NLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
NLG+ +EA + + + P K+ ++EQ
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ 156
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 23/155 (14%)
Query: 85 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKY 144
++A+ LL Q+YD D D AL L +K G + E + + +
Sbjct: 25 SQAVMLLE-QVYDADAFDVDVALHLGIAYVKT-----------GAVDRGTELLERSLADA 72
Query: 145 PTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 204
P K+A T LT + +Q YD +P K + N A+
Sbjct: 73 PDNVKVA-----------TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALK 121
Query: 205 NLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
NLG+ +EA + + + P K+ ++EQ
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ 156
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 23/155 (14%)
Query: 85 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKY 144
++A+ LL Q+YD D D AL L +K G + E + + +
Sbjct: 25 SQAVMLLE-QVYDADAFDVDVALHLGIAYVKT-----------GAVDRGTELLERSLADA 72
Query: 145 PTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 204
P K+A T LT + +Q YD +P K + N A+
Sbjct: 73 PDNVKVA-----------TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121
Query: 205 NLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
NLG+ +EA + + + P K+ ++EQ
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ 156
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 158 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIR 217
+P+L N L ++ Y VL C L +DN+KA+ + +A + +EA+
Sbjct: 66 TPLL-LNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFA 124
Query: 218 ELVEKYPTRRKLVENYTQAFE 238
+++E P +V QA E
Sbjct: 125 KVLELDPALAPVVSRELQALE 145
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 53 GNKAFQSGQYEAALVQYDKAIE-----QVRDSPV-------------LYTNRALTLLHLQ 94
GN+ ++ G + A +Y AI Q+++ P L N L ++
Sbjct: 21 GNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLVVE 80
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
Y VL C L +DN+KA+ + +A ++ +EA+ +++E P
Sbjct: 81 EYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPA 132
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+D K+ GN A +Y A+ Y +A+ +P+ +NRA ++ D +
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142
A +D KA A + + AKE + +E
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIE 107
>pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal
Structure Of A Crenarchaeal Rada
Length = 324
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 184 KALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKL-VENYTQAFEQE 240
KAL LD DN+ ++Y RA+ N + + ++ELV K P+ + + V++ T F E
Sbjct: 163 KALGLDIDNVXNNIYYIRAI-NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAE 219
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 158 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIR 217
+P+L N L ++ Y VL C L +DN+KA+ + +A + +EA+
Sbjct: 60 TPLL-LNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFA 118
Query: 218 ELVEKYPTRRKLVENYTQAFE 238
+++E P +V QA E
Sbjct: 119 KVLELDPALAPVVSRELQALE 139
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 53 GNKAFQSGQYEAALVQYDKAIE-----QVRDSPV-------------LYTNRALTLLHLQ 94
GN+ ++ G + A +Y AI Q+++ P L N L ++
Sbjct: 15 GNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLVVE 74
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
Y VL C L +DN+KA+ + +A ++ +EA+ +++E P
Sbjct: 75 EYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPA 126
>pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
pdb|2ZUB|A Chain A, Left Handed Rada
pdb|2ZUB|B Chain B, Left Handed Rada
pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
Length = 324
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 184 KALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKL-VENYTQAFEQE 240
KAL LD DN+ ++Y RA+ N + + ++ELV K P+ + + V++ T F E
Sbjct: 163 KALGLDIDNVMNNIYYIRAI-NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAE 219
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 37/89 (41%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
+I D+ + T LT + +Q YD +P K + N A+ NLG+ +
Sbjct: 68 SIADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFD 127
Query: 211 EAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
EA + + + P K+ ++EQ
Sbjct: 128 EAIDSFKIALGLRPNEGKVHRAIAYSYEQ 156
>pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
pdb|4A6X|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A6X|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A74|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A74|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A7O|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Adp
Length = 231
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 188 LDEDNMKAHLYKARAM---HNLGQREEAKEYIRELVEK-YPTRRKLVENYTQAFEQE 240
LD D + H+Y ARA H + ++A++ I+EL+ P + +V++ T F E
Sbjct: 85 LDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 141
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 183 DKALRLDEDNMKAHLYKARAMHNLGQREEA 212
+KA++LD + K L K +A++NL + EEA
Sbjct: 30 EKAIQLDPEESKYWLMKGKALYNLERYEEA 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,343,386
Number of Sequences: 62578
Number of extensions: 248698
Number of successful extensions: 919
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 740
Number of HSP's gapped (non-prelim): 154
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)