Query psy17412
Match_columns 240
No_of_seqs 525 out of 1472
Neff 11.6
Searched_HMMs 46136
Date Fri Aug 16 21:49:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626|consensus 100.0 8.8E-28 1.9E-32 185.2 16.3 200 38-237 278-500 (966)
2 KOG4626|consensus 100.0 3.7E-27 7.9E-32 181.9 19.7 174 38-222 346-519 (966)
3 KOG1126|consensus 99.9 2.5E-26 5.4E-31 178.1 13.9 188 40-238 415-602 (638)
4 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-24 2.7E-29 178.6 20.6 176 42-228 327-502 (615)
5 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-23 4.6E-28 171.4 24.2 189 39-238 358-553 (615)
6 COG3063 PilF Tfp pilus assembl 99.9 4.2E-23 9.1E-28 141.6 19.1 176 44-228 33-208 (250)
7 TIGR02521 type_IV_pilW type IV 99.9 1.4E-22 3.1E-27 147.2 21.7 187 42-237 27-213 (234)
8 PRK11189 lipoprotein NlpI; Pro 99.9 1.8E-22 3.9E-27 151.2 21.8 190 43-234 61-278 (296)
9 PRK15174 Vi polysaccharide exp 99.9 2.6E-22 5.6E-27 165.1 23.8 200 39-238 69-329 (656)
10 PRK12370 invasion protein regu 99.9 2.7E-22 5.9E-27 162.4 22.7 188 38-236 287-484 (553)
11 PRK09782 bacteriophage N4 rece 99.9 3.4E-22 7.4E-27 168.5 21.8 185 42-238 538-722 (987)
12 KOG1155|consensus 99.9 2.8E-22 6.1E-27 150.0 17.3 170 42-222 326-495 (559)
13 KOG1126|consensus 99.9 3.7E-22 8E-27 155.2 16.3 184 38-232 447-630 (638)
14 PRK15174 Vi polysaccharide exp 99.9 1.1E-20 2.3E-25 155.7 25.9 200 38-237 102-362 (656)
15 PRK11447 cellulose synthase su 99.9 4.8E-21 1E-25 167.0 23.1 200 38-237 295-539 (1157)
16 PRK11447 cellulose synthase su 99.9 8.3E-21 1.8E-25 165.5 24.0 201 38-238 377-682 (1157)
17 PRK12370 invasion protein regu 99.9 2.9E-21 6.4E-26 156.4 19.8 180 48-238 260-452 (553)
18 KOG1155|consensus 99.9 1.8E-20 3.8E-25 140.5 21.3 188 38-236 356-550 (559)
19 TIGR02917 PEP_TPR_lipo putativ 99.9 2E-20 4.4E-25 160.2 24.7 184 42-238 699-882 (899)
20 TIGR02521 type_IV_pilW type IV 99.9 4.2E-20 9E-25 134.3 22.8 175 39-224 58-234 (234)
21 KOG0547|consensus 99.9 1.7E-21 3.6E-26 146.8 15.5 186 40-236 354-546 (606)
22 KOG1125|consensus 99.9 3.4E-21 7.4E-26 147.8 16.7 189 38-237 311-552 (579)
23 KOG0547|consensus 99.9 4.6E-21 1E-25 144.5 17.0 170 45-225 325-494 (606)
24 TIGR02917 PEP_TPR_lipo putativ 99.9 4.7E-20 1E-24 158.0 25.4 198 41-238 460-680 (899)
25 KOG1173|consensus 99.9 5.4E-21 1.2E-25 146.3 17.2 199 40-238 306-534 (611)
26 PRK11788 tetratricopeptide rep 99.9 5.2E-20 1.1E-24 144.1 22.7 187 40-226 63-282 (389)
27 KOG1125|consensus 99.9 5.6E-21 1.2E-25 146.6 15.9 189 49-237 288-508 (579)
28 TIGR03302 OM_YfiO outer membra 99.9 1.5E-20 3.3E-25 137.0 17.7 185 41-225 28-235 (235)
29 PRK11788 tetratricopeptide rep 99.9 1.1E-19 2.3E-24 142.3 23.2 184 42-236 137-325 (389)
30 PRK09782 bacteriophage N4 rece 99.9 9.9E-20 2.2E-24 153.8 23.7 186 40-239 504-689 (987)
31 KOG0548|consensus 99.9 2.8E-20 6.1E-25 141.7 17.3 191 49-239 5-472 (539)
32 COG3063 PilF Tfp pilus assembl 99.9 6.1E-19 1.3E-23 121.3 21.7 184 38-232 61-246 (250)
33 KOG0624|consensus 99.8 1.9E-18 4E-23 125.6 22.4 192 41-232 33-262 (504)
34 PLN02789 farnesyltranstransfer 99.8 8.4E-19 1.8E-23 131.4 21.2 191 38-239 63-267 (320)
35 PLN02789 farnesyltranstransfer 99.8 3.1E-19 6.7E-24 133.8 18.8 176 53-239 44-229 (320)
36 PRK15359 type III secretion sy 99.8 2.6E-19 5.6E-24 119.8 14.4 123 100-236 13-135 (144)
37 KOG1129|consensus 99.8 7.3E-20 1.6E-24 132.0 12.4 191 36-237 246-439 (478)
38 PF13429 TPR_15: Tetratricopep 99.8 4.4E-20 9.6E-25 138.0 11.3 183 44-239 76-260 (280)
39 PRK15359 type III secretion sy 99.8 1.1E-19 2.4E-24 121.6 12.1 125 67-205 14-138 (144)
40 PF13429 TPR_15: Tetratricopep 99.8 7.2E-20 1.6E-24 136.8 11.5 170 42-222 106-277 (280)
41 KOG2002|consensus 99.8 1.2E-18 2.7E-23 140.8 19.0 201 38-238 156-387 (1018)
42 KOG2076|consensus 99.8 1.2E-17 2.5E-22 134.3 23.4 203 37-239 164-495 (895)
43 PRK10370 formate-dependent nit 99.8 3E-18 6.5E-23 120.5 17.1 127 93-230 52-181 (198)
44 KOG1129|consensus 99.8 6.3E-19 1.4E-23 127.3 11.5 189 38-234 282-470 (478)
45 PRK11189 lipoprotein NlpI; Pro 99.8 7.4E-18 1.6E-22 126.4 17.7 154 58-223 38-195 (296)
46 PRK10049 pgaA outer membrane p 99.8 4E-17 8.6E-22 137.2 24.0 170 51-231 277-465 (765)
47 PRK14574 hmsH outer membrane p 99.8 2.9E-17 6.4E-22 136.6 20.5 186 41-238 29-214 (822)
48 KOG0553|consensus 99.8 6.5E-18 1.4E-22 120.7 13.6 124 42-176 77-200 (304)
49 COG2956 Predicted N-acetylgluc 99.8 1.2E-16 2.6E-21 115.2 19.6 195 38-239 61-261 (389)
50 PRK15179 Vi polysaccharide bio 99.8 8.3E-17 1.8E-21 131.7 20.7 164 55-229 58-224 (694)
51 KOG2003|consensus 99.8 1.4E-16 3E-21 120.2 19.3 199 38-236 482-703 (840)
52 TIGR02552 LcrH_SycD type III s 99.8 3.3E-17 7.2E-22 109.1 14.5 120 101-231 4-123 (135)
53 KOG2002|consensus 99.8 1.5E-16 3.2E-21 129.1 20.1 194 37-240 224-427 (1018)
54 PRK10370 formate-dependent nit 99.8 3.2E-17 6.9E-22 115.4 13.7 125 59-194 52-179 (198)
55 KOG0624|consensus 99.8 1.8E-16 4E-21 115.4 17.6 190 47-236 156-384 (504)
56 TIGR03302 OM_YfiO outer membra 99.8 8.9E-17 1.9E-21 117.2 16.3 155 76-238 29-214 (235)
57 COG5010 TadD Flp pilus assembl 99.8 2.7E-16 5.8E-21 110.5 17.4 171 36-218 57-227 (257)
58 KOG0550|consensus 99.8 3.9E-17 8.5E-22 121.2 13.9 181 46-234 169-361 (486)
59 KOG3060|consensus 99.8 1E-15 2.2E-20 107.0 19.9 183 41-234 47-232 (289)
60 KOG2003|consensus 99.8 5.2E-17 1.1E-21 122.5 14.3 191 47-237 455-670 (840)
61 PRK10747 putative protoheme IX 99.7 4.4E-15 9.6E-20 116.0 25.0 192 47-239 119-373 (398)
62 PRK10049 pgaA outer membrane p 99.7 7E-16 1.5E-20 129.7 21.1 184 55-238 246-438 (765)
63 KOG1173|consensus 99.7 2.1E-16 4.5E-21 121.5 16.2 196 42-237 240-499 (611)
64 TIGR02552 LcrH_SycD type III s 99.7 8.6E-17 1.9E-21 107.1 11.9 117 67-194 4-120 (135)
65 KOG0553|consensus 99.7 1.2E-16 2.6E-21 114.4 13.0 111 115-236 82-192 (304)
66 KOG0495|consensus 99.7 1.7E-15 3.7E-20 118.7 20.4 200 36-235 641-893 (913)
67 TIGR00540 hemY_coli hemY prote 99.7 6.1E-15 1.3E-19 115.8 23.6 197 41-238 113-381 (409)
68 COG5010 TadD Flp pilus assembl 99.7 2.3E-15 5E-20 105.9 18.4 165 61-237 48-212 (257)
69 KOG1174|consensus 99.7 2E-15 4.3E-20 112.5 18.5 192 44-236 298-514 (564)
70 KOG1840|consensus 99.7 3.7E-16 8E-21 122.5 15.5 180 41-223 194-397 (508)
71 COG2956 Predicted N-acetylgluc 99.7 1.6E-14 3.4E-19 104.4 21.5 197 19-226 74-282 (389)
72 KOG2076|consensus 99.7 4.7E-15 1E-19 119.6 20.5 169 43-222 136-309 (895)
73 cd05804 StaR_like StaR_like; a 99.7 4.3E-15 9.3E-20 115.0 19.8 171 42-224 39-217 (355)
74 PRK10747 putative protoheme IX 99.7 1.7E-14 3.6E-19 112.8 22.2 172 50-223 157-391 (398)
75 PRK15179 Vi polysaccharide bio 99.7 2.1E-15 4.6E-20 123.6 16.3 145 40-195 80-224 (694)
76 KOG1840|consensus 99.7 4.3E-14 9.3E-19 111.1 22.8 194 42-238 237-461 (508)
77 PRK15363 pathogenicity island 99.7 1.6E-15 3.5E-20 99.9 11.9 105 43-147 32-136 (157)
78 PRK15363 pathogenicity island 99.7 4.4E-15 9.4E-20 97.9 13.6 106 107-223 27-133 (157)
79 KOG4162|consensus 99.7 7.7E-14 1.7E-18 111.1 23.0 136 82-228 652-789 (799)
80 KOG0495|consensus 99.7 2.7E-14 5.9E-19 112.0 19.8 183 39-233 577-759 (913)
81 TIGR00540 hemY_coli hemY prote 99.7 9.7E-14 2.1E-18 109.1 23.1 175 47-222 154-399 (409)
82 PRK14720 transcript cleavage f 99.7 1.2E-14 2.6E-19 120.5 18.5 184 41-238 26-268 (906)
83 PRK10866 outer membrane biogen 99.7 4.3E-14 9.4E-19 102.5 19.0 176 44-219 30-238 (243)
84 PF13525 YfiO: Outer membrane 99.7 2.1E-14 4.6E-19 101.8 16.9 170 44-213 3-198 (203)
85 COG4783 Putative Zn-dependent 99.6 2.6E-13 5.7E-18 103.3 22.5 153 43-223 303-455 (484)
86 PLN03088 SGT1, suppressor of 99.6 7.3E-15 1.6E-19 112.7 14.5 113 49-172 5-117 (356)
87 KOG0548|consensus 99.6 2E-14 4.4E-19 110.2 16.2 142 38-191 350-491 (539)
88 KOG3060|consensus 99.6 3.6E-14 7.9E-19 99.3 15.9 153 41-204 81-236 (289)
89 cd05804 StaR_like StaR_like; a 99.6 2.8E-14 6.2E-19 110.4 17.0 177 42-227 2-182 (355)
90 PF12569 NARP1: NMDA receptor- 99.6 1.1E-13 2.3E-18 109.9 20.1 189 46-234 4-269 (517)
91 KOG0550|consensus 99.6 6.7E-15 1.5E-19 109.5 11.7 194 44-237 47-331 (486)
92 KOG4162|consensus 99.6 8.7E-14 1.9E-18 110.8 18.6 201 39-239 471-766 (799)
93 PLN03088 SGT1, suppressor of 99.6 1.6E-14 3.5E-19 110.9 13.7 113 83-206 5-117 (356)
94 COG4783 Putative Zn-dependent 99.6 2.4E-13 5.3E-18 103.5 18.8 149 77-236 303-451 (484)
95 KOG1156|consensus 99.6 3.3E-13 7.1E-18 105.8 19.3 188 39-237 34-263 (700)
96 KOG1127|consensus 99.6 1.2E-13 2.6E-18 112.8 16.8 189 36-235 482-672 (1238)
97 KOG1174|consensus 99.6 6.6E-13 1.4E-17 99.3 18.3 190 38-238 224-449 (564)
98 TIGR02795 tol_pal_ybgF tol-pal 99.6 1.3E-13 2.8E-18 89.7 12.3 113 114-234 2-117 (119)
99 KOG1156|consensus 99.6 5.3E-13 1.1E-17 104.6 17.4 168 45-223 6-173 (700)
100 PRK14574 hmsH outer membrane p 99.6 3E-12 6.6E-17 107.1 22.9 176 45-231 326-522 (822)
101 PF13525 YfiO: Outer membrane 99.5 9.7E-13 2.1E-17 93.4 16.0 149 79-235 4-183 (203)
102 TIGR02795 tol_pal_ybgF tol-pal 99.5 3.7E-13 8E-18 87.5 12.1 105 46-150 2-112 (119)
103 KOG1128|consensus 99.5 9.9E-14 2.1E-18 110.0 10.7 120 92-222 497-616 (777)
104 PRK02603 photosystem I assembl 99.5 1.4E-12 3.1E-17 90.3 15.4 107 41-147 30-153 (172)
105 PF04733 Coatomer_E: Coatomer 99.5 2.6E-13 5.7E-18 100.8 12.4 171 45-231 101-274 (290)
106 COG4235 Cytochrome c biogenesi 99.5 9E-13 2E-17 95.2 14.0 125 99-234 141-268 (287)
107 KOG0543|consensus 99.5 1.1E-12 2.5E-17 98.0 13.6 136 44-190 206-357 (397)
108 PRK10866 outer membrane biogen 99.5 5.9E-12 1.3E-16 91.5 16.8 147 78-232 30-214 (243)
109 KOG2376|consensus 99.5 3E-11 6.4E-16 94.2 20.7 186 39-228 39-259 (652)
110 KOG1128|consensus 99.5 7.1E-13 1.5E-17 105.2 12.0 175 45-237 423-597 (777)
111 cd00189 TPR Tetratricopeptide 99.5 1.1E-12 2.4E-17 81.5 10.8 99 48-146 2-100 (100)
112 PF13414 TPR_11: TPR repeat; P 99.5 2.3E-13 5E-18 79.4 7.0 67 158-224 2-69 (69)
113 CHL00033 ycf3 photosystem I as 99.5 5.1E-12 1.1E-16 87.2 14.5 105 114-226 35-153 (168)
114 COG4785 NlpI Lipoprotein NlpI, 99.5 1.1E-11 2.4E-16 85.2 15.7 182 41-223 60-267 (297)
115 PRK14720 transcript cleavage f 99.5 4.2E-12 9.1E-17 105.7 16.4 179 38-222 57-283 (906)
116 PF13414 TPR_11: TPR repeat; P 99.5 3.1E-13 6.7E-18 78.9 7.2 66 80-145 3-69 (69)
117 cd00189 TPR Tetratricopeptide 99.5 1.6E-12 3.4E-17 80.8 10.9 98 116-224 2-99 (100)
118 PF12895 Apc3: Anaphase-promot 99.5 3E-13 6.5E-18 82.1 7.2 81 59-140 2-84 (84)
119 CHL00033 ycf3 photosystem I as 99.5 5.7E-12 1.2E-16 87.0 14.3 105 43-147 32-153 (168)
120 PRK02603 photosystem I assembl 99.5 3.7E-12 8E-17 88.2 13.2 119 78-227 33-154 (172)
121 KOG1127|consensus 99.5 3.2E-12 6.9E-17 104.8 14.4 167 59-234 471-637 (1238)
122 COG3071 HemY Uncharacterized e 99.4 1.7E-10 3.7E-15 86.1 22.0 184 42-225 114-360 (400)
123 PRK10153 DNA-binding transcrip 99.4 8.5E-12 1.8E-16 99.8 16.4 137 45-193 338-487 (517)
124 PF09976 TPR_21: Tetratricopep 99.4 9.7E-12 2.1E-16 83.6 14.2 89 49-137 14-108 (145)
125 KOG3785|consensus 99.4 8.7E-12 1.9E-16 91.9 14.9 165 50-233 61-225 (557)
126 PRK11906 transcriptional regul 99.4 1.4E-11 3E-16 94.5 16.3 162 48-220 257-434 (458)
127 KOG0543|consensus 99.4 3E-12 6.4E-17 95.8 12.3 124 116-239 210-337 (397)
128 PF09976 TPR_21: Tetratricopep 99.4 1.3E-11 2.8E-16 83.0 14.0 97 44-141 46-145 (145)
129 KOG4648|consensus 99.4 3.3E-13 7.1E-18 98.8 6.4 102 49-150 100-201 (536)
130 PRK15331 chaperone protein Sic 99.4 7.1E-12 1.5E-16 83.2 11.9 97 80-187 37-133 (165)
131 PRK10803 tol-pal system protei 99.4 1.1E-11 2.4E-16 90.7 14.0 115 114-236 142-260 (263)
132 COG4105 ComL DNA uptake lipopr 99.4 8.2E-11 1.8E-15 83.5 17.7 185 43-227 31-238 (254)
133 PF13432 TPR_16: Tetratricopep 99.4 1.4E-12 3E-17 75.1 7.2 65 163-227 1-65 (65)
134 COG4235 Cytochrome c biogenesi 99.4 1E-11 2.2E-16 89.9 13.1 121 62-193 138-261 (287)
135 PF12895 Apc3: Anaphase-promot 99.4 1.2E-12 2.5E-17 79.5 7.0 84 126-219 1-84 (84)
136 PRK10153 DNA-binding transcrip 99.4 1.4E-11 3.1E-16 98.5 14.7 141 77-229 334-489 (517)
137 PRK15331 chaperone protein Sic 99.4 1.4E-11 3E-16 81.8 11.8 109 40-149 31-139 (165)
138 PF14938 SNAP: Soluble NSF att 99.4 1E-11 2.2E-16 92.8 12.3 176 45-226 34-229 (282)
139 PRK10803 tol-pal system protei 99.4 1.3E-11 2.9E-16 90.3 12.4 108 81-196 143-254 (263)
140 PF12569 NARP1: NMDA receptor- 99.4 3.3E-10 7.1E-15 90.4 21.2 174 39-223 31-292 (517)
141 PF13432 TPR_16: Tetratricopep 99.4 3.3E-12 7.2E-17 73.5 7.0 64 85-148 2-65 (65)
142 KOG4234|consensus 99.4 1.2E-11 2.7E-16 83.9 10.6 115 116-236 97-211 (271)
143 KOG4340|consensus 99.4 2.1E-11 4.5E-16 87.9 11.9 166 57-222 21-207 (459)
144 PF04733 Coatomer_E: Coatomer 99.3 2.1E-11 4.5E-16 90.8 10.8 141 80-236 102-244 (290)
145 PLN03218 maturation of RBCL 1; 99.3 2.3E-09 5E-14 92.6 24.5 161 49-221 582-747 (1060)
146 COG1729 Uncharacterized protei 99.3 9.6E-11 2.1E-15 83.9 13.2 111 117-235 144-257 (262)
147 PRK11906 transcriptional regul 99.3 1.3E-10 2.9E-15 89.2 14.0 134 84-228 259-407 (458)
148 KOG2376|consensus 99.3 2.1E-10 4.5E-15 89.6 15.0 160 47-221 13-203 (652)
149 COG3071 HemY Uncharacterized e 99.3 1.3E-08 2.8E-13 76.2 23.4 186 43-239 81-340 (400)
150 KOG4234|consensus 99.3 1.6E-10 3.6E-15 78.6 12.3 108 43-150 92-204 (271)
151 PF09295 ChAPs: ChAPs (Chs5p-A 99.3 1.5E-10 3.2E-15 89.0 13.2 121 86-220 175-295 (395)
152 KOG1130|consensus 99.3 2.4E-11 5.2E-16 91.2 7.8 180 38-222 127-344 (639)
153 COG1729 Uncharacterized protei 99.3 1.1E-10 2.4E-15 83.6 10.9 109 83-199 144-255 (262)
154 PLN03218 maturation of RBCL 1; 99.3 8.1E-09 1.7E-13 89.3 24.0 176 46-222 472-678 (1060)
155 PF13512 TPR_18: Tetratricopep 99.3 2.3E-10 5.1E-15 74.4 11.1 107 44-150 8-135 (142)
156 PF12688 TPR_5: Tetratrico pep 99.2 3.5E-10 7.6E-15 72.4 11.3 97 82-186 3-102 (120)
157 PLN03081 pentatricopeptide (PP 99.2 7.2E-10 1.6E-14 93.3 16.5 187 46-237 325-538 (697)
158 PF14559 TPR_19: Tetratricopep 99.2 2.5E-11 5.5E-16 70.5 5.3 67 170-236 2-68 (68)
159 KOG1070|consensus 99.2 7.4E-09 1.6E-13 88.3 21.4 183 42-236 1493-1677(1710)
160 PF14559 TPR_19: Tetratricopep 99.2 5.1E-11 1.1E-15 69.2 6.4 67 56-122 1-67 (68)
161 KOG4648|consensus 99.2 1.2E-10 2.6E-15 85.6 9.5 109 117-236 100-208 (536)
162 PLN03081 pentatricopeptide (PP 99.2 2.2E-09 4.8E-14 90.3 18.3 175 44-222 358-557 (697)
163 PF13512 TPR_18: Tetratricopep 99.2 8.4E-10 1.8E-14 71.8 12.2 125 80-231 10-137 (142)
164 KOG1915|consensus 99.2 2.6E-08 5.6E-13 76.6 21.9 174 40-226 67-240 (677)
165 PF09295 ChAPs: ChAPs (Chs5p-A 99.2 4.4E-10 9.5E-15 86.5 12.6 118 54-185 177-294 (395)
166 PF13371 TPR_9: Tetratricopept 99.2 1.3E-10 2.8E-15 68.5 6.8 70 166-235 2-71 (73)
167 KOG1130|consensus 99.2 3E-11 6.5E-16 90.7 4.9 178 45-222 54-264 (639)
168 KOG3785|consensus 99.2 2.9E-09 6.2E-14 78.9 15.0 154 41-213 86-239 (557)
169 PF12688 TPR_5: Tetratrico pep 99.2 1E-09 2.3E-14 70.2 11.0 96 47-142 2-103 (120)
170 COG4105 ComL DNA uptake lipopr 99.2 6.3E-09 1.4E-13 74.1 15.6 151 79-237 33-211 (254)
171 PLN03077 Protein ECB2; Provisi 99.1 4.5E-09 9.7E-14 90.6 17.6 171 52-238 530-702 (857)
172 PF13371 TPR_9: Tetratricopept 99.1 2.8E-10 6E-15 67.1 7.2 69 53-121 2-70 (73)
173 PF14938 SNAP: Soluble NSF att 99.1 3.2E-09 6.9E-14 79.4 14.3 185 44-233 73-277 (282)
174 COG0457 NrfG FOG: TPR repeat [ 99.1 2.2E-08 4.8E-13 72.6 18.6 173 42-225 91-268 (291)
175 PLN03077 Protein ECB2; Provisi 99.1 7.6E-09 1.6E-13 89.2 18.3 166 43-222 551-720 (857)
176 COG4700 Uncharacterized protei 99.1 5.3E-08 1.1E-12 65.9 17.5 155 56-221 66-221 (251)
177 COG0457 NrfG FOG: TPR repeat [ 99.1 5.3E-08 1.1E-12 70.5 19.4 178 46-234 59-243 (291)
178 KOG4555|consensus 99.1 1.3E-08 2.9E-13 64.5 13.4 103 46-148 43-149 (175)
179 KOG4642|consensus 99.1 6.9E-10 1.5E-14 77.5 8.0 99 46-144 10-108 (284)
180 KOG4340|consensus 99.1 1.4E-08 3.1E-13 73.6 14.8 168 39-217 37-265 (459)
181 KOG3081|consensus 99.0 2.3E-07 4.9E-12 66.3 19.3 134 82-233 110-247 (299)
182 KOG3081|consensus 99.0 2.8E-07 6E-12 65.9 19.6 167 45-229 107-278 (299)
183 KOG1915|consensus 99.0 1E-07 2.2E-12 73.4 17.4 174 38-223 314-501 (677)
184 PF13424 TPR_12: Tetratricopep 99.0 1.8E-09 3.8E-14 64.5 5.8 65 44-108 3-74 (78)
185 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 3.2E-09 6.9E-14 81.7 8.1 70 41-110 70-142 (453)
186 PF13424 TPR_12: Tetratricopep 99.0 1.4E-09 3E-14 64.9 4.8 68 77-144 2-76 (78)
187 KOG2796|consensus 98.9 3.3E-08 7.2E-13 70.4 11.9 151 82-237 179-333 (366)
188 KOG0545|consensus 98.9 4.8E-08 1E-12 68.9 12.0 117 114-231 178-302 (329)
189 KOG1070|consensus 98.9 2.5E-07 5.4E-12 79.5 17.9 186 39-236 1451-1643(1710)
190 COG4785 NlpI Lipoprotein NlpI, 98.9 1.8E-08 4E-13 69.7 9.2 125 80-216 65-189 (297)
191 KOG1941|consensus 98.9 9.3E-08 2E-12 71.2 13.4 182 41-223 78-276 (518)
192 KOG2796|consensus 98.9 2.7E-07 5.9E-12 65.9 14.7 137 45-192 176-319 (366)
193 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 2E-08 4.3E-13 77.4 9.6 70 75-144 70-142 (453)
194 PRK04841 transcriptional regul 98.9 4.8E-07 1E-11 78.8 18.9 176 45-223 451-642 (903)
195 PRK04841 transcriptional regul 98.9 6.7E-07 1.4E-11 77.9 19.4 181 46-226 531-764 (903)
196 KOG0376|consensus 98.8 8E-09 1.7E-13 79.3 6.1 103 48-150 6-108 (476)
197 COG4700 Uncharacterized protei 98.8 6.7E-07 1.5E-11 60.7 14.1 131 44-186 87-220 (251)
198 KOG1586|consensus 98.8 1.2E-06 2.6E-11 61.5 15.7 179 45-229 33-231 (288)
199 KOG4642|consensus 98.8 2.3E-08 4.9E-13 70.1 6.9 94 118-222 14-107 (284)
200 PF05843 Suf: Suppressor of fo 98.8 3.5E-07 7.5E-12 68.4 13.8 138 82-230 3-144 (280)
201 KOG4555|consensus 98.8 6.1E-07 1.3E-11 57.2 12.5 92 120-222 49-144 (175)
202 PF06552 TOM20_plant: Plant sp 98.7 2.4E-07 5.2E-12 62.5 10.3 95 130-235 7-122 (186)
203 KOG0545|consensus 98.7 2.3E-07 5E-12 65.5 10.5 107 44-150 176-300 (329)
204 PF13428 TPR_14: Tetratricopep 98.7 4.8E-08 1E-12 51.0 5.5 43 194-236 2-44 (44)
205 KOG0376|consensus 98.7 2.9E-08 6.3E-13 76.4 6.0 106 119-235 9-114 (476)
206 PF06552 TOM20_plant: Plant sp 98.7 4E-07 8.6E-12 61.5 10.6 89 62-150 7-116 (186)
207 KOG1585|consensus 98.7 4.5E-06 9.7E-11 59.2 15.6 187 45-236 30-237 (308)
208 KOG0551|consensus 98.7 1.9E-07 4E-12 68.7 9.0 107 43-149 78-188 (390)
209 COG3118 Thioredoxin domain-con 98.7 2.4E-06 5.2E-11 62.3 14.3 162 45-218 133-297 (304)
210 KOG1941|consensus 98.7 1.7E-06 3.6E-11 64.8 13.7 175 44-223 41-236 (518)
211 PF13281 DUF4071: Domain of un 98.7 4.7E-05 1E-09 58.4 21.4 176 45-232 140-344 (374)
212 KOG2047|consensus 98.6 6.2E-06 1.3E-10 66.1 16.2 181 40-223 343-541 (835)
213 KOG0551|consensus 98.6 5.4E-07 1.2E-11 66.4 9.1 102 116-224 83-184 (390)
214 PF05843 Suf: Suppressor of fo 98.6 2.1E-06 4.5E-11 64.2 12.4 95 51-145 6-101 (280)
215 KOG2053|consensus 98.6 2.8E-06 6.1E-11 70.2 13.8 125 56-192 19-143 (932)
216 KOG2053|consensus 98.6 5.4E-05 1.2E-09 63.0 21.0 186 39-226 36-259 (932)
217 KOG2610|consensus 98.6 1.1E-05 2.4E-10 59.9 15.5 161 49-220 106-274 (491)
218 KOG2047|consensus 98.5 2.1E-05 4.6E-10 63.2 17.5 170 45-225 386-582 (835)
219 PF13428 TPR_14: Tetratricopep 98.5 2.6E-07 5.6E-12 48.2 4.8 40 48-87 3-42 (44)
220 COG3898 Uncharacterized membra 98.5 8.7E-05 1.9E-09 56.4 18.9 185 42-235 116-304 (531)
221 KOG1308|consensus 98.5 1.1E-07 2.3E-12 70.2 3.5 101 46-146 114-214 (377)
222 PF04184 ST7: ST7 protein; In 98.5 1.5E-05 3.2E-10 62.3 14.7 172 51-233 173-386 (539)
223 KOG1586|consensus 98.5 5E-05 1.1E-09 53.7 15.6 144 45-194 73-230 (288)
224 PF13431 TPR_17: Tetratricopep 98.5 2E-07 4.3E-12 45.5 2.9 32 103-134 2-33 (34)
225 PF13431 TPR_17: Tetratricopep 98.5 1.9E-07 4E-12 45.6 2.8 33 181-213 1-33 (34)
226 KOG2610|consensus 98.4 1.8E-05 4E-10 58.8 13.9 127 85-219 108-235 (491)
227 KOG4507|consensus 98.4 4.2E-05 9.2E-10 61.0 15.7 77 160-236 643-719 (886)
228 PF00515 TPR_1: Tetratricopept 98.4 1.1E-06 2.4E-11 43.0 4.8 33 194-226 2-34 (34)
229 PF00515 TPR_1: Tetratricopept 98.4 1.1E-06 2.4E-11 43.0 4.7 32 115-146 2-33 (34)
230 KOG2471|consensus 98.4 1.7E-06 3.6E-11 67.1 7.7 149 82-236 208-378 (696)
231 PF10300 DUF3808: Protein of u 98.4 3.7E-05 8E-10 61.7 15.5 157 59-223 201-377 (468)
232 PF10300 DUF3808: Protein of u 98.4 9.8E-06 2.1E-10 65.0 12.0 119 59-187 246-375 (468)
233 PF07719 TPR_2: Tetratricopept 98.4 1.7E-06 3.7E-11 42.3 5.1 34 193-226 1-34 (34)
234 PF07719 TPR_2: Tetratricopept 98.4 1.7E-06 3.7E-11 42.3 4.9 33 115-147 2-34 (34)
235 KOG2471|consensus 98.4 3.3E-06 7.3E-11 65.5 8.5 155 52-206 212-382 (696)
236 COG2976 Uncharacterized protei 98.3 0.00028 6E-09 48.6 16.5 119 100-227 72-193 (207)
237 PF03704 BTAD: Bacterial trans 98.2 5.9E-05 1.3E-09 50.7 11.7 94 50-143 10-125 (146)
238 PF03704 BTAD: Bacterial trans 98.2 6E-05 1.3E-09 50.7 11.5 102 121-222 13-125 (146)
239 COG3118 Thioredoxin domain-con 98.2 0.00021 4.4E-09 52.5 14.6 145 82-237 136-282 (304)
240 PF04184 ST7: ST7 protein; In 98.2 5.5E-05 1.2E-09 59.3 12.3 135 85-221 173-323 (539)
241 COG3898 Uncharacterized membra 98.1 0.0025 5.4E-08 48.9 22.1 115 32-146 139-295 (531)
242 KOG1308|consensus 98.1 1.7E-06 3.7E-11 64.1 1.8 95 120-225 120-214 (377)
243 PF13181 TPR_8: Tetratricopept 98.0 1.3E-05 2.9E-10 39.0 4.2 32 194-225 2-33 (34)
244 KOG3617|consensus 98.0 0.0012 2.6E-08 55.2 16.3 160 51-221 805-995 (1416)
245 COG2976 Uncharacterized protei 97.9 0.00078 1.7E-08 46.5 12.4 117 64-192 70-192 (207)
246 PF13181 TPR_8: Tetratricopept 97.9 3.7E-05 8E-10 37.4 4.6 32 47-78 2-33 (34)
247 KOG1585|consensus 97.9 0.00026 5.7E-09 50.5 9.8 134 81-220 32-177 (308)
248 PF08424 NRDE-2: NRDE-2, neces 97.9 0.0023 4.9E-08 49.1 15.6 31 193-223 154-184 (321)
249 PF13174 TPR_6: Tetratricopept 97.9 4.1E-05 8.9E-10 36.9 4.2 32 195-226 2-33 (33)
250 KOG0530|consensus 97.8 0.00037 8.1E-09 50.2 10.0 170 58-238 55-232 (318)
251 PF02259 FAT: FAT domain; Int 97.8 0.0017 3.6E-08 50.5 14.9 147 79-225 145-341 (352)
252 KOG1258|consensus 97.8 0.011 2.3E-07 47.9 19.9 183 43-236 294-484 (577)
253 KOG3617|consensus 97.8 0.0051 1.1E-07 51.7 17.0 176 44-219 856-1106(1416)
254 PF13174 TPR_6: Tetratricopept 97.8 7.8E-05 1.7E-09 35.9 4.4 32 48-79 2-33 (33)
255 KOG2300|consensus 97.8 0.0059 1.3E-07 48.2 16.0 155 58-223 287-475 (629)
256 KOG2396|consensus 97.8 0.00043 9.4E-09 54.3 10.1 94 132-236 89-183 (568)
257 KOG2300|consensus 97.8 0.0083 1.8E-07 47.4 16.8 173 48-224 325-516 (629)
258 PF13281 DUF4071: Domain of un 97.8 0.0012 2.6E-08 50.9 12.3 149 44-193 177-339 (374)
259 PF08424 NRDE-2: NRDE-2, neces 97.7 0.0025 5.4E-08 48.8 14.0 153 37-189 10-184 (321)
260 PF04781 DUF627: Protein of un 97.7 0.00087 1.9E-08 41.8 9.2 92 52-143 2-107 (111)
261 PF14853 Fis1_TPR_C: Fis1 C-te 97.7 0.00031 6.7E-09 37.8 6.4 39 194-232 2-40 (53)
262 PRK10941 hypothetical protein; 97.7 0.00039 8.5E-09 51.4 8.7 73 160-232 182-254 (269)
263 KOG1550|consensus 97.7 0.0052 1.1E-07 50.8 15.7 169 38-223 236-427 (552)
264 COG0790 FOG: TPR repeat, SEL1 97.7 0.013 2.9E-07 44.3 17.0 162 47-226 74-270 (292)
265 KOG1914|consensus 97.6 0.021 4.5E-07 45.8 19.5 150 62-222 309-464 (656)
266 PF12968 DUF3856: Domain of Un 97.6 0.0022 4.8E-08 40.5 9.8 108 115-222 8-129 (144)
267 PF04910 Tcf25: Transcriptiona 97.6 0.0037 8E-08 48.6 13.5 172 36-225 30-225 (360)
268 KOG0530|consensus 97.6 0.0045 9.7E-08 44.9 12.6 144 60-231 40-185 (318)
269 KOG1550|consensus 97.6 0.02 4.3E-07 47.5 18.4 148 59-223 225-394 (552)
270 PF13176 TPR_7: Tetratricopept 97.6 0.00019 4.2E-09 35.4 4.1 28 195-222 1-28 (36)
271 PF02259 FAT: FAT domain; Int 97.6 0.0051 1.1E-07 47.8 13.9 120 42-172 142-305 (352)
272 KOG1310|consensus 97.6 0.00059 1.3E-08 54.1 8.4 108 41-148 369-479 (758)
273 PRK10941 hypothetical protein; 97.6 0.0012 2.7E-08 48.8 9.7 77 46-122 181-257 (269)
274 PF13176 TPR_7: Tetratricopept 97.5 0.0003 6.4E-09 34.7 4.3 27 49-75 2-28 (36)
275 PF09613 HrpB1_HrpK: Bacterial 97.5 0.0032 7E-08 42.3 10.2 100 45-145 9-108 (160)
276 PF12968 DUF3856: Domain of Un 97.5 0.0065 1.4E-07 38.4 10.7 93 51-143 14-129 (144)
277 KOG0985|consensus 97.5 0.02 4.3E-07 49.5 16.2 77 162-238 1223-1324(1666)
278 COG0790 FOG: TPR repeat, SEL1 97.4 0.03 6.5E-07 42.4 17.7 165 52-234 47-230 (292)
279 KOG1914|consensus 97.4 0.016 3.5E-07 46.4 14.6 160 67-236 266-444 (656)
280 KOG2396|consensus 97.4 0.0037 8.1E-08 49.4 10.9 88 63-150 88-176 (568)
281 PF09613 HrpB1_HrpK: Bacterial 97.4 0.017 3.8E-07 38.9 13.0 84 81-175 11-94 (160)
282 KOG1839|consensus 97.4 0.0025 5.4E-08 55.8 10.7 176 44-222 930-1128(1236)
283 KOG3824|consensus 97.4 0.00095 2.1E-08 49.5 6.8 79 45-123 115-193 (472)
284 PF14561 TPR_20: Tetratricopep 97.3 0.0026 5.6E-08 38.7 7.6 75 133-218 7-83 (90)
285 KOG4507|consensus 97.3 0.0031 6.7E-08 50.9 9.6 114 68-192 201-316 (886)
286 KOG3824|consensus 97.3 0.00083 1.8E-08 49.7 5.8 73 163-235 120-192 (472)
287 KOG4814|consensus 97.3 0.0041 8.9E-08 50.6 10.0 98 47-144 355-458 (872)
288 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0026 5.6E-08 34.3 6.2 36 48-83 3-38 (53)
289 PF08631 SPO22: Meiosis protei 97.2 0.011 2.4E-07 44.4 11.7 132 92-224 5-152 (278)
290 smart00028 TPR Tetratricopepti 97.2 0.00067 1.4E-08 31.9 3.7 32 115-146 2-33 (34)
291 KOG1310|consensus 97.2 0.0021 4.5E-08 51.2 7.7 102 114-226 374-478 (758)
292 KOG3783|consensus 97.2 0.043 9.4E-07 44.0 14.9 188 38-225 259-523 (546)
293 PF04781 DUF627: Protein of un 97.2 0.01 2.2E-07 37.2 9.3 95 120-222 2-107 (111)
294 KOG4814|consensus 97.2 0.076 1.6E-06 43.7 16.3 103 116-223 356-458 (872)
295 smart00028 TPR Tetratricopepti 97.2 0.00075 1.6E-08 31.7 3.7 31 195-225 3-33 (34)
296 PF09986 DUF2225: Uncharacteri 97.2 0.0099 2.2E-07 42.6 10.5 92 127-226 90-198 (214)
297 PF10602 RPN7: 26S proteasome 97.2 0.011 2.4E-07 41.1 10.4 101 115-223 37-143 (177)
298 PF07079 DUF1347: Protein of u 97.2 0.038 8.2E-07 43.5 13.9 126 45-184 378-520 (549)
299 KOG2041|consensus 97.2 0.015 3.3E-07 48.1 12.2 157 36-216 682-875 (1189)
300 PF14561 TPR_20: Tetratricopep 97.2 0.0061 1.3E-07 37.1 7.9 47 66-112 8-54 (90)
301 PF09986 DUF2225: Uncharacteri 97.1 0.011 2.3E-07 42.5 10.1 93 55-147 86-198 (214)
302 PF10602 RPN7: 26S proteasome 97.1 0.045 9.8E-07 38.1 12.7 103 42-144 32-143 (177)
303 KOG3364|consensus 97.1 0.017 3.7E-07 37.5 9.6 77 43-119 29-110 (149)
304 COG5191 Uncharacterized conser 97.0 0.00099 2.1E-08 49.4 4.2 80 157-236 105-185 (435)
305 PF15015 NYD-SP12_N: Spermatog 97.0 0.011 2.4E-07 45.8 9.9 88 53-140 183-288 (569)
306 KOG3364|consensus 97.0 0.0042 9.1E-08 40.2 6.3 71 161-231 34-109 (149)
307 COG4976 Predicted methyltransf 97.0 0.0011 2.4E-08 47.0 3.8 60 168-227 4-63 (287)
308 TIGR02561 HrpB1_HrpK type III 97.0 0.049 1.1E-06 36.2 12.1 84 48-131 12-95 (153)
309 PF07079 DUF1347: Protein of u 97.0 0.08 1.7E-06 41.8 13.9 143 46-188 6-157 (549)
310 COG3914 Spy Predicted O-linked 97.0 0.064 1.4E-06 43.6 13.7 133 65-202 50-185 (620)
311 PRK15180 Vi polysaccharide bio 97.0 0.0022 4.8E-08 50.5 5.6 124 57-191 300-423 (831)
312 COG4976 Predicted methyltransf 96.9 0.0016 3.4E-08 46.2 4.0 58 56-113 5-62 (287)
313 TIGR02561 HrpB1_HrpK type III 96.9 0.021 4.5E-07 37.9 8.7 81 83-174 13-93 (153)
314 PF04910 Tcf25: Transcriptiona 96.8 0.051 1.1E-06 42.4 12.0 116 107-222 33-168 (360)
315 COG2909 MalT ATP-dependent tra 96.6 0.37 8.1E-06 41.4 18.4 168 46-224 458-649 (894)
316 KOG1258|consensus 96.6 0.3 6.4E-06 40.0 15.3 155 45-207 330-489 (577)
317 KOG0985|consensus 96.6 0.064 1.4E-06 46.6 11.9 156 52-220 1054-1247(1666)
318 PRK15180 Vi polysaccharide bio 96.6 0.009 2E-07 47.3 6.6 110 38-147 315-424 (831)
319 PF08631 SPO22: Meiosis protei 96.6 0.21 4.6E-06 37.6 17.0 121 57-188 4-150 (278)
320 COG3914 Spy Predicted O-linked 96.5 0.12 2.7E-06 42.1 12.5 89 52-141 73-162 (620)
321 KOG2581|consensus 96.5 0.16 3.5E-06 39.5 12.3 129 91-227 137-281 (493)
322 PF13374 TPR_10: Tetratricopep 96.4 0.012 2.6E-07 29.7 4.6 29 194-222 3-31 (42)
323 PF13374 TPR_10: Tetratricopep 96.4 0.012 2.6E-07 29.7 4.5 30 115-144 3-32 (42)
324 PF10345 Cohesin_load: Cohesin 96.4 0.52 1.1E-05 39.8 19.0 169 44-220 57-252 (608)
325 PRK13184 pknD serine/threonine 96.4 0.3 6.6E-06 42.9 14.8 98 52-150 481-588 (932)
326 COG5191 Uncharacterized conser 96.3 0.0073 1.6E-07 45.0 4.3 83 69-151 96-179 (435)
327 COG2912 Uncharacterized conser 96.3 0.027 5.9E-07 41.3 7.2 73 160-232 182-254 (269)
328 PF15015 NYD-SP12_N: Spermatog 96.2 0.039 8.4E-07 43.0 8.0 103 118-220 180-289 (569)
329 PF04053 Coatomer_WDAD: Coatom 96.2 0.39 8.4E-06 38.7 13.8 129 50-218 299-427 (443)
330 COG2912 Uncharacterized conser 96.2 0.059 1.3E-06 39.7 8.4 75 48-122 183-257 (269)
331 KOG0890|consensus 96.2 0.3 6.4E-06 46.4 14.2 64 158-223 1669-1732(2382)
332 COG4649 Uncharacterized protei 96.1 0.26 5.7E-06 33.8 13.4 123 92-221 70-195 (221)
333 KOG3616|consensus 96.0 0.15 3.3E-06 43.0 10.8 61 46-106 661-732 (1636)
334 KOG0529|consensus 96.0 0.58 1.2E-05 36.7 16.4 173 54-237 36-239 (421)
335 COG4649 Uncharacterized protei 95.9 0.31 6.8E-06 33.5 14.2 144 51-205 63-212 (221)
336 PF12862 Apc5: Anaphase-promot 95.9 0.13 2.8E-06 31.6 7.9 31 116-146 43-73 (94)
337 PF11207 DUF2989: Protein of u 95.9 0.38 8.3E-06 33.9 11.4 83 89-179 115-198 (203)
338 COG5107 RNA14 Pre-mRNA 3'-end 95.8 0.76 1.6E-05 36.7 13.5 167 43-223 299-496 (660)
339 KOG2422|consensus 95.7 0.81 1.8E-05 37.5 13.4 140 40-191 278-451 (665)
340 COG3629 DnrI DNA-binding trans 95.7 0.065 1.4E-06 39.9 7.0 63 160-222 154-216 (280)
341 PF10373 EST1_DNA_bind: Est1 D 95.7 0.039 8.5E-07 41.4 6.1 62 178-239 1-62 (278)
342 PF07720 TPR_3: Tetratricopept 95.7 0.074 1.6E-06 26.0 5.0 32 194-225 2-35 (36)
343 PRK13184 pknD serine/threonine 95.7 0.1 2.2E-06 45.7 9.0 102 120-230 481-589 (932)
344 COG3629 DnrI DNA-binding trans 95.6 0.14 3.1E-06 38.2 8.5 80 62-143 137-216 (280)
345 PF10579 Rapsyn_N: Rapsyn N-te 95.6 0.17 3.6E-06 29.7 6.9 62 117-186 9-70 (80)
346 KOG3616|consensus 95.6 0.45 9.8E-06 40.3 11.8 119 82-220 767-909 (1636)
347 PF12862 Apc5: Anaphase-promot 95.5 0.072 1.6E-06 32.7 5.8 57 169-225 8-73 (94)
348 PF07720 TPR_3: Tetratricopept 95.5 0.082 1.8E-06 25.9 4.8 32 47-78 2-35 (36)
349 PF07721 TPR_4: Tetratricopept 95.4 0.026 5.7E-07 25.3 2.8 24 194-217 2-25 (26)
350 KOG1839|consensus 95.4 0.12 2.6E-06 46.0 8.7 145 41-188 968-1128(1236)
351 PF10345 Cohesin_load: Cohesin 95.4 1.4 3.1E-05 37.3 14.9 121 97-223 38-169 (608)
352 COG5107 RNA14 Pre-mRNA 3'-end 95.4 1.1 2.4E-05 35.9 15.0 50 36-85 32-81 (660)
353 PF10516 SHNi-TPR: SHNi-TPR; 95.3 0.044 9.4E-07 27.2 3.5 29 47-75 2-30 (38)
354 COG2909 MalT ATP-dependent tra 95.3 1.7 3.8E-05 37.6 16.6 124 79-208 414-552 (894)
355 KOG1464|consensus 95.3 0.69 1.5E-05 34.3 10.7 48 60-107 41-92 (440)
356 KOG0546|consensus 95.2 0.079 1.7E-06 40.4 6.1 104 47-150 223-345 (372)
357 KOG0546|consensus 95.2 0.063 1.4E-06 40.9 5.5 115 120-234 228-350 (372)
358 PF10516 SHNi-TPR: SHNi-TPR; 95.1 0.057 1.2E-06 26.8 3.5 30 115-144 2-31 (38)
359 TIGR03504 FimV_Cterm FimV C-te 95.0 0.17 3.8E-06 26.0 5.3 25 197-221 3-27 (44)
360 PF07721 TPR_4: Tetratricopept 95.0 0.041 8.8E-07 24.6 2.7 23 116-138 3-25 (26)
361 COG3947 Response regulator con 94.9 0.16 3.5E-06 37.8 6.8 60 161-220 281-340 (361)
362 smart00386 HAT HAT (Half-A-TPR 94.9 0.11 2.4E-06 24.2 4.4 31 207-237 1-31 (33)
363 PF10373 EST1_DNA_bind: Est1 D 94.8 0.16 3.5E-06 38.0 7.1 62 65-126 1-62 (278)
364 KOG0890|consensus 94.5 1.2 2.7E-05 42.6 12.6 107 42-150 1666-1791(2382)
365 PF11207 DUF2989: Protein of u 94.5 0.46 9.9E-06 33.5 7.9 76 58-134 118-198 (203)
366 KOG0529|consensus 94.5 1.9 4.1E-05 34.0 12.0 130 98-238 47-194 (421)
367 KOG3807|consensus 94.4 1.8 3.9E-05 33.2 15.0 177 49-236 187-405 (556)
368 PF10579 Rapsyn_N: Rapsyn N-te 94.3 0.52 1.1E-05 27.6 6.7 60 46-105 6-68 (80)
369 KOG2422|consensus 94.2 2.7 5.9E-05 34.7 16.1 155 59-224 251-450 (665)
370 KOG2041|consensus 94.1 1.9 4.2E-05 36.5 11.8 50 57-106 771-822 (1189)
371 PF04053 Coatomer_WDAD: Coatom 94.0 0.93 2E-05 36.6 9.9 102 55-185 327-428 (443)
372 COG4455 ImpE Protein of avirul 93.8 0.25 5.5E-06 35.2 5.7 63 167-229 9-71 (273)
373 PF10255 Paf67: RNA polymerase 93.8 1.2 2.7E-05 35.3 10.0 58 162-220 125-191 (404)
374 KOG3807|consensus 93.7 2.5 5.4E-05 32.5 13.3 133 82-216 186-334 (556)
375 PF14863 Alkyl_sulf_dimr: Alky 93.7 0.73 1.6E-05 30.7 7.4 59 40-98 64-122 (141)
376 KOG1463|consensus 93.6 2.6 5.6E-05 32.5 13.1 169 50-224 132-318 (411)
377 PF09670 Cas_Cas02710: CRISPR- 93.5 1.4 3.1E-05 34.8 10.0 62 48-109 133-198 (379)
378 smart00386 HAT HAT (Half-A-TPR 93.2 0.35 7.6E-06 22.4 4.2 29 60-88 1-29 (33)
379 PF11817 Foie-gras_1: Foie gra 93.1 0.65 1.4E-05 34.3 7.3 86 130-220 154-245 (247)
380 PF11817 Foie-gras_1: Foie gra 92.9 1.8 3.9E-05 32.0 9.3 59 81-139 179-243 (247)
381 COG3947 Response regulator con 92.8 0.7 1.5E-05 34.6 6.8 61 82-142 281-341 (361)
382 KOG0276|consensus 92.4 2.7 5.8E-05 35.0 10.1 66 68-142 629-694 (794)
383 COG4941 Predicted RNA polymera 92.3 4.2 9.1E-05 31.3 15.8 162 62-235 212-407 (415)
384 COG4455 ImpE Protein of avirul 92.3 1.1 2.3E-05 32.3 6.8 57 56-112 11-67 (273)
385 KOG2114|consensus 92.0 2.3 4.9E-05 36.7 9.6 28 47-74 369-396 (933)
386 PF00244 14-3-3: 14-3-3 protei 91.9 3.9 8.4E-05 30.1 12.9 32 48-79 3-34 (236)
387 TIGR03504 FimV_Cterm FimV C-te 91.9 0.56 1.2E-05 24.1 4.0 25 118-142 3-27 (44)
388 KOG1538|consensus 91.8 2.6 5.7E-05 35.4 9.5 25 161-185 806-830 (1081)
389 KOG0686|consensus 91.8 2.6 5.6E-05 33.3 9.0 98 115-220 151-256 (466)
390 COG1747 Uncharacterized N-term 91.7 6.6 0.00014 32.2 19.0 38 168-205 214-251 (711)
391 KOG0686|consensus 91.5 4.3 9.3E-05 32.1 9.9 97 45-141 149-256 (466)
392 COG5159 RPN6 26S proteasome re 91.4 4.9 0.00011 30.3 12.4 167 50-221 7-193 (421)
393 KOG1538|consensus 91.3 8.2 0.00018 32.7 13.7 51 166-219 780-830 (1081)
394 PF12854 PPR_1: PPR repeat 91.3 0.74 1.6E-05 22.0 3.9 26 193-218 7-32 (34)
395 PF12854 PPR_1: PPR repeat 90.5 1 2.2E-05 21.5 4.0 27 113-139 6-32 (34)
396 COG5187 RPN7 26S proteasome re 90.4 6.3 0.00014 29.8 12.2 118 63-188 92-221 (412)
397 KOG4151|consensus 90.3 1.7 3.7E-05 37.0 7.4 105 120-231 59-165 (748)
398 PF09670 Cas_Cas02710: CRISPR- 90.1 8.2 0.00018 30.7 13.3 61 83-143 134-198 (379)
399 cd02682 MIT_AAA_Arch MIT: doma 90.1 2.5 5.4E-05 24.7 6.2 31 45-75 5-35 (75)
400 KOG4151|consensus 90.1 3.5 7.5E-05 35.3 8.9 106 45-150 52-163 (748)
401 PF10255 Paf67: RNA polymerase 89.8 0.62 1.3E-05 36.9 4.3 60 83-142 125-192 (404)
402 PF14863 Alkyl_sulf_dimr: Alky 89.5 2.5 5.5E-05 28.2 6.4 51 159-209 70-120 (141)
403 KOG2561|consensus 89.4 4.3 9.3E-05 32.4 8.4 97 46-142 163-295 (568)
404 PF09797 NatB_MDM20: N-acetylt 89.0 5.6 0.00012 31.4 9.2 46 95-140 198-243 (365)
405 COG5536 BET4 Protein prenyltra 88.8 8.4 0.00018 28.9 9.9 162 64-236 50-236 (328)
406 KOG3783|consensus 88.6 7.8 0.00017 31.9 9.5 91 101-200 254-344 (546)
407 PF13041 PPR_2: PPR repeat fam 88.4 2 4.3E-05 22.5 4.6 25 83-107 6-30 (50)
408 PF11846 DUF3366: Domain of un 88.4 2 4.3E-05 30.4 5.8 50 176-226 128-177 (193)
409 PF04212 MIT: MIT (microtubule 88.3 2.1 4.5E-05 24.4 4.9 30 46-75 5-34 (69)
410 PF09797 NatB_MDM20: N-acetylt 88.0 3.7 8.1E-05 32.4 7.7 47 60-106 197-243 (365)
411 PF04190 DUF410: Protein of un 87.6 9.9 0.00021 28.4 12.1 65 158-222 89-170 (260)
412 KOG2561|consensus 87.3 7.4 0.00016 31.2 8.5 107 116-222 165-296 (568)
413 PF13041 PPR_2: PPR repeat fam 87.1 2.9 6.4E-05 21.8 6.4 29 194-222 4-32 (50)
414 PF12739 TRAPPC-Trs85: ER-Golg 87.1 14 0.00031 29.8 17.0 166 47-225 209-402 (414)
415 PF10952 DUF2753: Protein of u 87.0 4.4 9.5E-05 26.2 6.0 29 48-76 3-31 (140)
416 smart00299 CLH Clathrin heavy 86.9 6.8 0.00015 25.8 11.2 36 58-93 19-54 (140)
417 KOG4279|consensus 86.8 14 0.00031 32.0 10.3 172 45-229 200-402 (1226)
418 PF01535 PPR: PPR repeat; Int 86.2 1.8 3.9E-05 19.6 3.3 26 196-221 3-28 (31)
419 cd02681 MIT_calpain7_1 MIT: do 85.6 3.1 6.8E-05 24.4 4.6 31 45-75 5-35 (76)
420 KOG0687|consensus 85.5 15 0.00032 28.4 13.1 101 80-188 104-210 (393)
421 COG1747 Uncharacterized N-term 84.6 22 0.00047 29.5 17.7 165 62-237 82-249 (711)
422 KOG0276|consensus 84.2 20 0.00043 30.3 9.8 49 56-109 647-695 (794)
423 PF02064 MAS20: MAS20 protein 83.9 5.5 0.00012 25.8 5.5 39 197-235 67-105 (121)
424 cd02683 MIT_1 MIT: domain cont 83.5 4.2 9.1E-05 23.9 4.5 30 46-75 6-35 (77)
425 KOG1464|consensus 83.2 17 0.00038 27.3 11.4 177 47-223 66-261 (440)
426 KOG2114|consensus 83.1 12 0.00025 32.7 8.4 111 54-182 342-454 (933)
427 KOG1920|consensus 82.1 42 0.0009 30.9 11.9 25 163-187 1003-1027(1265)
428 PF09205 DUF1955: Domain of un 81.9 12 0.00027 24.7 6.8 62 162-223 88-150 (161)
429 cd02680 MIT_calpain7_2 MIT: do 81.7 4.5 9.8E-05 23.6 4.1 30 46-75 6-35 (75)
430 cd02682 MIT_AAA_Arch MIT: doma 81.6 5 0.00011 23.4 4.2 27 116-142 8-34 (75)
431 KOG0128|consensus 81.4 37 0.0008 29.9 12.6 157 61-222 94-260 (881)
432 PHA02537 M terminase endonucle 81.0 4.8 0.0001 29.3 4.9 91 57-147 94-211 (230)
433 TIGR00756 PPR pentatricopeptid 80.5 4.4 9.5E-05 18.7 4.0 27 196-222 3-29 (35)
434 PF09205 DUF1955: Domain of un 80.5 10 0.00022 25.1 5.7 93 47-144 55-150 (161)
435 KOG2581|consensus 80.5 28 0.00061 27.9 20.1 104 45-148 168-281 (493)
436 PF11846 DUF3366: Domain of un 80.1 7.7 0.00017 27.4 5.8 48 99-147 130-177 (193)
437 COG5187 RPN7 26S proteasome re 79.6 25 0.00054 26.8 13.9 104 43-146 112-224 (412)
438 cd02678 MIT_VPS4 MIT: domain c 79.4 7.2 0.00016 22.7 4.6 30 46-75 6-35 (75)
439 KOG2758|consensus 79.0 28 0.0006 27.0 18.7 163 65-227 114-322 (432)
440 KOG2063|consensus 79.0 48 0.001 29.7 14.2 168 44-221 502-712 (877)
441 KOG0687|consensus 78.6 29 0.00062 26.9 13.1 104 43-146 101-213 (393)
442 PHA02537 M terminase endonucle 78.5 8.1 0.00018 28.2 5.4 101 124-226 93-211 (230)
443 TIGR02710 CRISPR-associated pr 78.3 32 0.0007 27.4 11.1 64 42-105 124-196 (380)
444 PF04348 LppC: LppC putative l 78.0 0.7 1.5E-05 38.4 0.0 101 43-143 21-127 (536)
445 smart00745 MIT Microtubule Int 77.7 8.4 0.00018 22.4 4.6 28 48-75 10-37 (77)
446 smart00299 CLH Clathrin heavy 77.2 18 0.00039 23.8 12.0 119 88-236 15-134 (140)
447 cd00280 TRFH Telomeric Repeat 76.5 13 0.00027 26.2 5.6 47 165-212 117-163 (200)
448 KOG4014|consensus 76.3 24 0.00053 24.9 12.6 162 43-222 31-233 (248)
449 cd02684 MIT_2 MIT: domain cont 76.2 10 0.00023 22.1 4.6 30 46-75 6-35 (75)
450 PF14689 SPOB_a: Sensor_kinase 76.0 11 0.00025 20.9 5.1 38 184-221 14-51 (62)
451 cd02656 MIT MIT: domain contai 75.9 10 0.00022 21.9 4.6 28 48-75 8-35 (75)
452 COG5536 BET4 Protein prenyltra 74.9 33 0.00071 26.0 7.6 126 98-234 50-191 (328)
453 PF04212 MIT: MIT (microtubule 74.3 14 0.00029 21.0 4.8 25 197-221 9-33 (69)
454 PF02064 MAS20: MAS20 protein 73.7 12 0.00025 24.3 4.7 30 51-80 68-97 (121)
455 KOG1463|consensus 71.4 47 0.001 26.0 11.0 174 45-223 47-239 (411)
456 PRK15490 Vi polysaccharide bio 71.4 49 0.0011 28.1 8.8 60 43-104 39-98 (578)
457 cd02677 MIT_SNX15 MIT: domain 71.0 15 0.00032 21.5 4.3 27 49-75 9-35 (75)
458 COG4941 Predicted RNA polymera 71.0 48 0.001 25.9 8.5 89 61-150 311-401 (415)
459 cd02679 MIT_spastin MIT: domai 71.0 14 0.00029 21.9 4.2 27 48-74 10-36 (79)
460 cd00280 TRFH Telomeric Repeat 70.9 16 0.00035 25.7 5.0 42 54-96 119-160 (200)
461 KOG1497|consensus 70.5 48 0.001 25.7 10.9 103 115-221 104-212 (399)
462 cd02681 MIT_calpain7_1 MIT: do 70.0 12 0.00027 21.9 3.9 27 117-143 9-35 (76)
463 PF13226 DUF4034: Domain of un 69.9 46 0.001 25.2 11.0 135 53-210 7-150 (277)
464 PF07219 HemY_N: HemY protein 69.7 25 0.00054 22.1 10.0 54 42-95 55-108 (108)
465 KOG3677|consensus 69.1 55 0.0012 26.4 8.1 23 163-185 276-298 (525)
466 PF13812 PPR_3: Pentatricopept 68.7 10 0.00023 17.3 4.4 27 195-221 3-29 (34)
467 PRK11619 lytic murein transgly 68.6 79 0.0017 27.4 19.0 154 62-219 295-465 (644)
468 TIGR03362 VI_chp_7 type VI sec 68.0 54 0.0012 25.3 12.4 125 54-187 107-278 (301)
469 PF02184 HAT: HAT (Half-A-TPR) 67.9 12 0.00026 17.7 3.8 28 208-236 2-29 (32)
470 TIGR00985 3a0801s04tom mitocho 67.7 24 0.00052 23.8 5.3 38 197-234 94-132 (148)
471 TIGR02710 CRISPR-associated pr 67.2 63 0.0014 25.8 12.8 54 86-139 136-196 (380)
472 PF12583 TPPII_N: Tripeptidyl 66.9 34 0.00073 22.5 6.1 38 201-238 84-121 (139)
473 PF04762 IKI3: IKI3 family; I 66.8 1E+02 0.0022 28.2 10.4 46 169-219 882-927 (928)
474 PF07163 Pex26: Pex26 protein; 66.2 56 0.0012 24.8 10.2 94 49-142 38-146 (309)
475 PF07219 HemY_N: HemY protein 66.2 21 0.00045 22.5 4.7 47 162-208 62-108 (108)
476 PF10952 DUF2753: Protein of u 66.2 34 0.00074 22.3 6.0 65 162-226 4-87 (140)
477 PF04190 DUF410: Protein of un 65.2 56 0.0012 24.5 17.9 95 45-139 9-115 (260)
478 KOG4563|consensus 65.0 20 0.00043 28.1 5.0 56 44-99 39-102 (400)
479 cd02679 MIT_spastin MIT: domai 64.5 22 0.00047 21.1 4.1 25 197-221 12-36 (79)
480 PF12921 ATP13: Mitochondrial 64.1 38 0.00082 22.1 7.2 63 162-224 5-83 (126)
481 KOG4056|consensus 63.8 33 0.00072 22.7 5.2 37 197-233 85-121 (143)
482 KOG4279|consensus 63.3 40 0.00086 29.5 6.8 130 59-193 256-400 (1226)
483 PF15297 CKAP2_C: Cytoskeleton 62.9 58 0.0013 25.5 7.1 49 177-225 121-172 (353)
484 PF04090 RNA_pol_I_TF: RNA pol 62.7 54 0.0012 23.5 8.9 128 81-209 42-194 (199)
485 PF08238 Sel1: Sel1 repeat; I 61.5 17 0.00037 17.3 4.4 15 129-143 23-37 (39)
486 KOG0128|consensus 61.0 1.2E+02 0.0026 27.0 17.1 170 59-237 163-356 (881)
487 smart00671 SEL1 Sel1-like repe 60.3 17 0.00037 16.9 3.8 27 116-142 3-33 (36)
488 COG4259 Uncharacterized protei 59.9 39 0.00084 21.1 4.7 37 193-229 72-108 (121)
489 PF01239 PPTA: Protein prenylt 58.9 18 0.00038 16.6 3.9 25 213-237 3-27 (31)
490 smart00777 Mad3_BUB1_I Mad3/BU 58.5 49 0.0011 21.6 6.9 43 97-139 80-124 (125)
491 PRK15490 Vi polysaccharide bio 58.4 99 0.0021 26.4 8.2 77 94-183 22-98 (578)
492 PF06957 COPI_C: Coatomer (COP 58.4 1E+02 0.0022 25.2 10.9 111 117-228 207-335 (422)
493 COG5159 RPN6 26S proteasome re 57.3 87 0.0019 24.1 14.3 171 48-224 127-316 (421)
494 KOG1497|consensus 56.6 94 0.002 24.3 10.0 98 80-185 103-210 (399)
495 COG3014 Uncharacterized protei 56.5 97 0.0021 24.4 13.0 42 192-233 212-253 (449)
496 PF04840 Vps16_C: Vps16, C-ter 56.2 95 0.0021 24.2 8.2 78 113-215 207-284 (319)
497 TIGR02996 rpt_mate_G_obs repea 55.1 28 0.0006 17.7 3.3 32 181-212 4-35 (42)
498 cd00215 PTS_IIA_lac PTS_IIA, P 55.0 37 0.0008 21.0 4.2 36 41-76 10-45 (97)
499 PF06957 COPI_C: Coatomer (COP 54.9 1.2E+02 0.0025 24.8 11.5 102 48-149 206-335 (422)
500 PF14929 TAF1_subA: TAF RNA Po 54.8 1.3E+02 0.0029 25.5 11.4 129 94-238 323-466 (547)
No 1
>KOG4626|consensus
Probab=99.96 E-value=8.8e-28 Score=185.23 Aligned_cols=200 Identities=19% Similarity=0.150 Sum_probs=115.0
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
+....|..+.++-++|.+|+.+|..+-||..|+++++..|..+.++.++|.++-..|+..+|..+|.+++.+.|+++++.
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam 357 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAM 357 (966)
T ss_pred HHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCchHHHHHHHHHHHHhcc
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDSPVLYTNRALTLLHLQL 174 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~~~~~~la~~~~~~~~ 174 (240)
.++|.++..+|++++|...|+++++..|+.... ++...|..++.+.++|.+|...|+
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 555555555555555555555555555554333 122223333446666666666666
Q ss_pred cCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 175 YDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 175 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
.+.|+++|.+++..+|...+++.++|.+|...|+..+|+..|+.++++.|+.+++..++..++
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666655544
No 2
>KOG4626|consensus
Probab=99.96 E-value=3.7e-27 Score=181.86 Aligned_cols=174 Identities=18% Similarity=0.122 Sum_probs=129.2
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
...-.+..++++.++|+++..+|.+++|..+|.++++.+|+.+.++.++|.+|.+.|++++|+.+|+.++++.|..++++
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~ 425 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL 425 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
.++|.+|-.+|+.+.|+.+|.+++.++|...+. +.++|.+|...|+..+|+..|+.++++.|+.++++.
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeA-----------hsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEA-----------HSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHH-----------HhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 666666666666666666666666666666555 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
+++.++.-..++.+--+-+.+..++
T Consensus 495 Nllh~lq~vcdw~D~d~~~~kl~si 519 (966)
T KOG4626|consen 495 NLLHCLQIVCDWTDYDKRMKKLVSI 519 (966)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHH
Confidence 9999987766666555555555543
No 3
>KOG1126|consensus
Probab=99.94 E-value=2.5e-26 Score=178.07 Aligned_cols=188 Identities=19% Similarity=0.185 Sum_probs=181.8
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
..++..++.|..+|+++--+++++.|++.|++|++++|....+|..+|.=+.....++.|..+|++++..+|.+..+|+.
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
+|.+|.++++++.|.-+|++|++++|.+... ...+|.++.+.|+.++|+..+++|+.++|.++-..+..
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi-----------~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVI-----------LCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhH-----------HhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 9999999999999999999999999999888 99999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 200 ARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
|.++..++++++|+..++++.+..|++..++..+++++.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k 602 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYK 602 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988764
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=1.2e-24 Score=178.65 Aligned_cols=176 Identities=17% Similarity=0.103 Sum_probs=169.4
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
.+..+..+..+|.++...|++++|+..|++++..+|+....+..+|.++...|++++|+..++++++.+|+++.+++.+|
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 201 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 201 (240)
.++...|++++|+..|+++++++|++... +..+|.++...|++++|+..++++++..|+++.++..+|.
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~-----------~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~ 475 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFS-----------HIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE 475 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999998877 9999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 202 AMHNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
++..+|++++|+..|++++.+.|.+..
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKETKP 502 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCcccc
Confidence 999999999999999999999987543
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=2.1e-23 Score=171.41 Aligned_cols=189 Identities=17% Similarity=0.220 Sum_probs=158.7
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|.....++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|++..++.
T Consensus 358 l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 44578888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH---
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA--- 195 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~--- 195 (240)
.+|.++..+|++++|+..++++++..|+++.. +..+|.++...|++++|+..|++++.+.|.....
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~-----------~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~ 506 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDV-----------YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN 506 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH-----------HHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccccc
Confidence 99999999999999999999999999998777 7788888888888888888888888877753221
Q ss_pred ---HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 196 ---HLYKARAM-HNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 196 ---~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+...+.++ ...|++++|+..+++++.++|++..++..+++++.
T Consensus 507 ~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~ 553 (615)
T TIGR00990 507 VLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLL 553 (615)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 22223333 33577888888888888877777777777776654
No 6
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.92 E-value=4.2e-23 Score=141.60 Aligned_cols=176 Identities=21% Similarity=0.151 Sum_probs=162.4
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
..+.+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+.|..
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHH
Q psy17412 124 MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 203 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 203 (240)
++.+|++++|...|++++.. |..+. .+..+.|+|.|..+.|+++.|..+|+++++.+|+++.....++..+
T Consensus 113 LC~qg~~~eA~q~F~~Al~~-P~Y~~--------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 113 LCAQGRPEEAMQQFERALAD-PAYGE--------PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH 183 (250)
T ss_pred HHhCCChHHHHHHHHHHHhC-CCCCC--------cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence 99999999999999999873 43322 2555999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 204 HNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
+..|++..|..+++......+...+
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~~~A~ 208 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGGAQAE 208 (250)
T ss_pred HhcccchHHHHHHHHHHhcccccHH
Confidence 9999999999999998877665544
No 7
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.92 E-value=1.4e-22 Score=147.24 Aligned_cols=187 Identities=20% Similarity=0.154 Sum_probs=169.3
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
....+..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 201 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 201 (240)
.++...|++++|+..+++++...+. +.....+..+|.++...|++++|...+.++++.+|++...+..+|.
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 177 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLY---------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhcccc---------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHH
Confidence 9999999999999999999985321 1123348899999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 202 AMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
++...|++++|..++++++...|.++..+...+.+.
T Consensus 178 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 178 LYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIA 213 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999888877766665554
No 8
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.92 E-value=1.8e-22 Score=151.20 Aligned_cols=190 Identities=16% Similarity=0.106 Sum_probs=156.3
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
+..+..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++..++.++|.
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCchHHH---------------HHhc-----cCchHHHHHHHHHHHHhcccCchhhHH
Q psy17412 123 AMHSLGQREEAKEYVRQLVEKYPTRRKLA---------------IEQV-----RDSPVLYTNRALTLLHLQLYDPVLPDC 182 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------------~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~ 182 (240)
++...|++++|+..++++++.+|+++... +... ..++..+ ..+.+....|+...+ ..+
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~-~~~~~~~~lg~~~~~-~~~ 218 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQW-GWNIVEFYLGKISEE-TLM 218 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcccc-HHHHHHHHccCCCHH-HHH
Confidence 99999999999999999999999986320 0000 0112222 245666667777554 233
Q ss_pred HHHh-------hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Q psy17412 183 DKAL-------RLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP-TRRKLVENYT 234 (240)
Q Consensus 183 ~~~l-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~ 234 (240)
..+. +..|....+|+++|.++..+|++++|+.+|++++..+| +..+.+..+.
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~ 278 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALL 278 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 3333 44566778999999999999999999999999999997 5555555443
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=2.6e-22 Score=165.08 Aligned_cols=200 Identities=18% Similarity=0.157 Sum_probs=143.0
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|..++.++.+|......|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++.
T Consensus 69 l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~ 148 (656)
T PRK15174 69 VLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFA 148 (656)
T ss_pred HHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 34456666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH------------------------------------------------
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKL------------------------------------------------ 150 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------------------------------------------------ 150 (240)
.+|.++...|++++|+..+++++...|+++..
T Consensus 149 ~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~ 228 (656)
T PRK15174 149 LHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKY 228 (656)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCH
Confidence 66666666666666666666555555443322
Q ss_pred ---------HHHhccCchHHHHHHHHHHHHhcccCc----hhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 151 ---------AIEQVRDSPVLYTNRALTLLHLQLYDP----VLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIR 217 (240)
Q Consensus 151 ---------~~~~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 217 (240)
++...|.++..+..+|.++...|++++ |+..++++++.+|+++.++..+|.++...|++++|+..++
T Consensus 229 ~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 229 QEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 223345566778888888888888885 7888888888888888888888888888888888888888
Q ss_pred HHHHhCCCcHHHHHHHHHhhh
Q psy17412 218 ELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 218 ~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+++..+|+++.++..++.++.
T Consensus 309 ~al~l~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 309 QSLATHPDLPYVRAMYARALR 329 (656)
T ss_pred HHHHhCCCCHHHHHHHHHHHH
Confidence 888888888888888877664
No 10
>PRK12370 invasion protein regulator; Provisional
Probab=99.91 E-value=2.7e-22 Score=162.38 Aligned_cols=188 Identities=15% Similarity=0.004 Sum_probs=165.3
Q ss_pred HHHhchhHHHHHHHhHhHHHHh---------CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHh
Q psy17412 38 ERKARQDIADHFKANGNKAFQS---------GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR 108 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 108 (240)
....+|+.+.++..+|.++... +++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++
T Consensus 287 Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 366 (553)
T PRK12370 287 CVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL 366 (553)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4566788888998888877643 3489999999999999999999999999999999999999999999999
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 109 LDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 109 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
++|+++.+++.+|.++...|++++|+..++++++++|.++.. +..++.+++..|++++|+..++++++.
T Consensus 367 l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~-----------~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 367 LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA-----------GITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh-----------HHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999997665 666676777889999999999999877
Q ss_pred C-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 189 D-EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 189 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
. |+++..+..+|.++..+|++++|...+.++....|.+...+..++..
T Consensus 436 ~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~ 484 (553)
T PRK12370 436 HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAE 484 (553)
T ss_pred ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 5 77888899999999999999999999999888888877766666544
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=3.4e-22 Score=168.54 Aligned_cols=185 Identities=13% Similarity=0.034 Sum_probs=166.2
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
.+.....++..|..+...|++++|+.+|+++++..|+....+..++......|++++|+..++++++.+|+ +.++..+|
T Consensus 538 ~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA 616 (987)
T PRK09782 538 HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARA 616 (987)
T ss_pred cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 33334557788889999999999999999999999888777777777777789999999999999999996 88999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 201 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 201 (240)
.++.++|++++|+..+++++.++|+++.. +.++|.++...|++++|+..++++++.+|+++.++.++|.
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a-----------~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~ 685 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPNNSNY-----------QAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAY 685 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999998887 9999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 202 AMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
++..+|++++|+.+|++++.++|++..+....+.+.+
T Consensus 686 al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 686 VNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 9999999999999999999999999888777776554
No 12
>KOG1155|consensus
Probab=99.90 E-value=2.8e-22 Score=150.02 Aligned_cols=170 Identities=14% Similarity=0.143 Sum_probs=161.2
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
+.-.++...-+|+.|.-.++.++|+.+|+++++++|....+|..+|.-|..+++...|++.|++|++++|.+.++|+.+|
T Consensus 326 dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLG 405 (559)
T KOG1155|consen 326 DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLG 405 (559)
T ss_pred ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhh
Confidence 34455666667888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 201 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 201 (240)
+.|.-++...=|+-+|+++.+.-|+++.. |..+|.||.++++.++|+++|++++.....+..++..+|.
T Consensus 406 QaYeim~Mh~YaLyYfqkA~~~kPnDsRl-----------w~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKALELKPNDSRL-----------WVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCchHH-----------HHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 99999999999999999999999999888 9999999999999999999999999999989999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q psy17412 202 AMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~ 222 (240)
+|.++++..+|..+|++.++.
T Consensus 475 Lye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999983
No 13
>KOG1126|consensus
Probab=99.90 E-value=3.7e-22 Score=155.17 Aligned_cols=184 Identities=14% Similarity=0.137 Sum_probs=176.0
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
+...+|..+-++..+|.-+....+++.|..+|+.|+..+|.+-.+|+.+|.+|.+.++++.|.-.|++|++++|.+....
T Consensus 447 AiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~ 526 (638)
T KOG1126|consen 447 AIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVIL 526 (638)
T ss_pred hhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
..+|.++.++|+.++|+..+++|+.++|.++-. .+..|.+++..+++++|+..+++.-++-|++..+++
T Consensus 527 ~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~-----------~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~ 595 (638)
T KOG1126|consen 527 CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLC-----------KYHRASILFSLGRYVEALQELEELKELVPQESSVFA 595 (638)
T ss_pred hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchh-----------HHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHH
Confidence 999999999999999999999999999999888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
.+|.+|..+|+.+.|+..|.-+..++|.-.++...
T Consensus 596 llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i~~k 630 (638)
T KOG1126|consen 596 LLGKIYKRLGNTDLALLHFSWALDLDPKGAQIQIK 630 (638)
T ss_pred HHHHHHHHHccchHHHHhhHHHhcCCCccchhhHH
Confidence 99999999999999999999999999987664433
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=1.1e-20 Score=155.65 Aligned_cols=200 Identities=14% Similarity=0.064 Sum_probs=151.3
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
.....|.++.++..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|+++.++
T Consensus 102 ~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~ 181 (656)
T PRK15174 102 LLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI 181 (656)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 34556777778888888888888888888888888888888777777777777777777777777776666555444332
Q ss_pred H----------------------------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-------------
Q psy17412 118 L----------------------------------YKARAMHSLGQREEAKEYVRQLVEKYPTRRKL------------- 150 (240)
Q Consensus 118 ~----------------------------------~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------------- 150 (240)
. .++.++...|++++|+..+++++...|+++..
T Consensus 182 ~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 182 ATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR 261 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 2 22445555666666666666666666654432
Q ss_pred --------------HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17412 151 --------------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYI 216 (240)
Q Consensus 151 --------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 216 (240)
++...|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|
T Consensus 262 ~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 262 SREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred chhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 233345666779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHhh
Q psy17412 217 RELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 217 ~~~~~~~p~~~~~~~~l~~~~ 237 (240)
++++..+|++......++.++
T Consensus 342 ~~al~~~P~~~~~~~~~a~al 362 (656)
T PRK15174 342 VQLAREKGVTSKWNRYAAAAL 362 (656)
T ss_pred HHHHHhCccchHHHHHHHHHH
Confidence 999999998876665555544
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=4.8e-21 Score=166.98 Aligned_cols=200 Identities=18% Similarity=0.146 Sum_probs=173.3
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH--------------HHHHHHHHHHHccCcCchHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV--------------LYTNRALTLLHLQLYDPVLPDC 103 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------~~~~la~~~~~~~~~~~A~~~~ 103 (240)
.....|.++.++..+|.++...|++++|+..|+++++.+|++.. .....|.++...|++++|+..|
T Consensus 295 aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 295 AVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45567889999999999999999999999999999999987642 1235588899999999999999
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHh------------------cc---------
Q psy17412 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQ------------------VR--------- 156 (240)
Q Consensus 104 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~------------------~~--------- 156 (240)
++++..+|+++.++..+|.++...|++++|+..|+++++++|++....... .+
T Consensus 375 ~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 375 QQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987651100 00
Q ss_pred ----CchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 157 ----DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 157 ----~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
.....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+++..+..
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a 534 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYA 534 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 0123355678888899999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHhh
Q psy17412 233 YTQAF 237 (240)
Q Consensus 233 l~~~~ 237 (240)
++..+
T Consensus 535 ~al~l 539 (1157)
T PRK11447 535 YGLYL 539 (1157)
T ss_pred HHHHH
Confidence 66544
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=8.3e-21 Score=165.50 Aligned_cols=201 Identities=16% Similarity=0.117 Sum_probs=176.0
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHH-----------------------------
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRAL----------------------------- 88 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~----------------------------- 88 (240)
.....|..+.++..+|.++...|++++|++.|+++++.+|++..++..++.
T Consensus 377 Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 377 ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445678888999999999999999999999999999999998766655444
Q ss_pred -------------HHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHH----
Q psy17412 89 -------------TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLA---- 151 (240)
Q Consensus 89 -------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---- 151 (240)
++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..|+++...
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~a 536 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYG 536 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 445679999999999999999999999999999999999999999999999999999876530
Q ss_pred -----------------------------------------------------------HHhccCchHHHHHHHHHHHHh
Q psy17412 152 -----------------------------------------------------------IEQVRDSPVLYTNRALTLLHL 172 (240)
Q Consensus 152 -----------------------------------------------------------~~~~~~~~~~~~~la~~~~~~ 172 (240)
+...|.++..+..+|.++...
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~ 616 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQR 616 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 112345566788899999999
Q ss_pred cccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 173 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
|++++|+..|+++++.+|+++.++..++.++...|++++|+..+++++...|+++..+..++.++.
T Consensus 617 g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~ 682 (1157)
T PRK11447 617 GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWA 682 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888887777654
No 17
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=2.9e-21 Score=156.44 Aligned_cols=180 Identities=14% Similarity=0.047 Sum_probs=160.4
Q ss_pred HHHHhHhHHHHh---CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc---------CcCchHHHHHHHHhcCcccHH
Q psy17412 48 HFKANGNKAFQS---GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ---------LYDPVLPDCDKALRLDEDNMK 115 (240)
Q Consensus 48 ~~~~~a~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~~~~~~~~~~ 115 (240)
.++..|...+.. +++++|+..|+++++.+|+++.++..+|.+|...+ ++++|...++++++++|+++.
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence 345566655433 46789999999999999999999999999887554 378999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
++..+|.++...|++++|+..++++++++|+++.. ++.+|.++...|++++|+..++++++++|.++..
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a-----------~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADI-----------KYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 99999999999999999999999999999999888 9999999999999999999999999999998887
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHhhh
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKY-PTRRKLVENYTQAFE 238 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 238 (240)
...++.++...|++++|+..+++++... |+++..+..++.++.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~ 452 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLS 452 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 7777778888999999999999999875 778888888887763
No 18
>KOG1155|consensus
Probab=99.88 E-value=1.8e-20 Score=140.51 Aligned_cols=188 Identities=14% Similarity=0.125 Sum_probs=173.6
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
+...+|....+|..+|.-|...++...|++.|++|++++|.+-.+|+.+|..|.-++...=|+-+|+++....|+++..|
T Consensus 356 ALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw 435 (559)
T KOG1155|consen 356 ALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLW 435 (559)
T ss_pred HHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhh-------cCh
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR-------LDE 190 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-------~~~ 190 (240)
..+|.||.++++.++|+++|++++.....+... +..+|.+|.++++.++|..+|++.++ ..|
T Consensus 436 ~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~-----------l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~ 504 (559)
T KOG1155|consen 436 VALGECYEKLNRLEEAIKCYKRAILLGDTEGSA-----------LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD 504 (559)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhccccchHH-----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch
Confidence 999999999999999999999999998887777 99999999999999999999999988 456
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 191 DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 191 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+...+...++..+.+.+++++|..+...++.-++.-.++...+..+
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlRei 550 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREI 550 (559)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 6778888899999999999999999999998877666665554443
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=2e-20 Score=160.18 Aligned_cols=184 Identities=18% Similarity=0.157 Sum_probs=163.4
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
.+.....+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|...+++++...|++..++..+|
T Consensus 699 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la 777 (899)
T TIGR02917 699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALA 777 (899)
T ss_pred CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45566777788888888888888888888888888876 56677888888888888888888888888888888888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 201 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 201 (240)
.++..+|++++|+..|+++++..|+++.. +..+|.++...|+ .+|+..++++++..|+++..+..+|.
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKAPDNAVV-----------LNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 88888899999999999998888887776 9999999999999 88999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 202 AMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
++...|++++|+.+++++++.+|.++.++..++.++.
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL 882 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999888765
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.88 E-value=4.2e-20 Score=134.29 Aligned_cols=175 Identities=14% Similarity=0.129 Sum_probs=161.5
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC--cccHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD--EDNMKA 116 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 116 (240)
....|.....+..+|.++...|++++|++.++++++..|.+..++..+|.++...|++++|+..+++++... +.....
T Consensus 58 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 137 (234)
T TIGR02521 58 LEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARS 137 (234)
T ss_pred HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHH
Confidence 455678889999999999999999999999999999999999999999999999999999999999999754 456678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHH
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
+..+|.++...|++++|...+++++...|++... +..+|.++...|++++|...++++++..|.++..+
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 206 (234)
T TIGR02521 138 LENAGLCALKAGDFDKAEKYLTRALQIDPQRPES-----------LLELAELYYLRGQYKDARAYLERYQQTYNQTAESL 206 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999988777 99999999999999999999999999988888899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
..++.++...|+.++|..+.+.+....|
T Consensus 207 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 207 WLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999999999999888776654
No 21
>KOG0547|consensus
Probab=99.88 E-value=1.7e-21 Score=146.84 Aligned_cols=186 Identities=22% Similarity=0.256 Sum_probs=149.1
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
...+.....++.+|..|....+-++....|.++..++|.++.+|+.+|.+++-++++++|+..|+++++++|++.-++..
T Consensus 354 ~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547|consen 354 KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 34455555588888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh------hH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED------NM 193 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~ 193 (240)
++.+.++++++++++..|+.+.+..|+.++. +...|.++..++++++|++.|++++++.|. ++
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Ev-----------y~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKKFPNCPEV-----------YNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchH-----------HHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 8888888888888888888888888887777 888888888888888888888888888887 55
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 194 KAHLYKARAMH-NLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 194 ~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
..+...|.+.. -.+++..|+..++++++++|....++..++.+
T Consensus 503 ~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 503 APLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQF 546 (606)
T ss_pred hhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 55555555433 24778888888888888888887777777765
No 22
>KOG1125|consensus
Probab=99.88 E-value=3.4e-21 Score=147.76 Aligned_cols=189 Identities=14% Similarity=0.121 Sum_probs=170.8
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-------
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD------- 110 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------- 110 (240)
+..++|.++++|..+|.+....++-..|+..++++++++|++..++..||.+|...|.-.+|+.++.+-+...
T Consensus 311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~ 390 (579)
T KOG1125|consen 311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV 390 (579)
T ss_pred HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcc
Confidence 5678999999999999999999999999999999999999999999999999999998888888888775432
Q ss_pred ----------------------------------c--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHh
Q psy17412 111 ----------------------------------E--DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQ 154 (240)
Q Consensus 111 ----------------------------------~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 154 (240)
| .+++++..||.+|.-.|+|++|+++|+.|+...|++...
T Consensus 391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l---- 466 (579)
T KOG1125|consen 391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL---- 466 (579)
T ss_pred ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH----
Confidence 2 345678899999999999999999999999999999888
Q ss_pred ccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------
Q psy17412 155 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR-------- 226 (240)
Q Consensus 155 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-------- 226 (240)
|..+|..+....+.++|+..|.+|+++.|..+++++++|..++.+|.|++|.++|-.++.+.+.+
T Consensus 467 -------WNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~ 539 (579)
T KOG1125|consen 467 -------WNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPM 539 (579)
T ss_pred -------HHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999876541
Q ss_pred --HHHHHHHHHhh
Q psy17412 227 --RKLVENYTQAF 237 (240)
Q Consensus 227 --~~~~~~l~~~~ 237 (240)
..+|..|..++
T Consensus 540 ~se~iw~tLR~al 552 (579)
T KOG1125|consen 540 ASENIWQTLRLAL 552 (579)
T ss_pred chHHHHHHHHHHH
Confidence 24676666443
No 23
>KOG0547|consensus
Probab=99.88 E-value=4.6e-21 Score=144.49 Aligned_cols=170 Identities=19% Similarity=0.162 Sum_probs=165.8
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
-+.++...|..++-.|++..|.+.|+.+|.++|.....|..+|.+|...++.++....|.++..++|.++++|+.+|++.
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHH
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 204 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 204 (240)
+-++++++|+..|++++.++|++... +..++...++++++++++..|+.+.+..|+.++++...|.++.
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~~-----------~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAYA-----------YIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT 473 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Confidence 99999999999999999999999888 9999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC
Q psy17412 205 NLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~p~ 225 (240)
.++++++|.+.|..++.+.|.
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccc
Confidence 999999999999999999998
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=4.7e-20 Score=157.96 Aligned_cols=198 Identities=21% Similarity=0.170 Sum_probs=168.2
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
..|..+..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|...+++++...|.+..++..+
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 45667788888999999999999999999999999999888888999999999999999999999998888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCchHHHHHHHHHHHHhcccCc
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDSPVLYTNRALTLLHLQLYDP 177 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~~~~~~la~~~~~~~~~~~ 177 (240)
+.++...|++++|+..++++++.+|.+... .....|.++..+..+|.++...|++++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 998888999999999999888888876543 223345667778888999988899999
Q ss_pred hhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 178 VLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 178 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
|+..++++++..|.++..+..+|.++...|++++|...|++++..+|++...+..++.++.
T Consensus 620 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999988888888888889999989999999999999998888888888777776653
No 25
>KOG1173|consensus
Probab=99.88 E-value=5.4e-21 Score=146.26 Aligned_cols=199 Identities=18% Similarity=0.119 Sum_probs=178.0
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
...|..+..|+..|..|+..|++.+|.++|.++..++|..+.+|...|..+...|..++|+..|.+|-++.|..-.....
T Consensus 306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY 385 (611)
T KOG1173|consen 306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY 385 (611)
T ss_pred HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999888778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HH---Hhc-c---CchHHHHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AI---EQV-R---DSPVLYTNRALTL 169 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~---~~~-~---~~~~~~~~la~~~ 169 (240)
+|.-|..++++.-|.+.|.+++.+.|.++-. ++ ... + .-...+.++|.++
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 9999999999999999999999999988765 01 000 0 0123589999999
Q ss_pred HHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 170 LHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 170 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.+++++++|+.++++++.+.|.++.++..+|.+|..+|+.+.|+++|.+++.+.|++..+...|+.+++
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888888887765
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=5.2e-20 Score=144.06 Aligned_cols=187 Identities=13% Similarity=0.067 Sum_probs=107.7
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 115 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 115 (240)
...|.++..+..+|..+...|++++|+..+++++...+.. ..++..+|.+|...|++++|...|+++++..|.+..
T Consensus 63 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 142 (389)
T PRK11788 63 KVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEG 142 (389)
T ss_pred hcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHH
Confidence 3455666667777777777777777777777666542221 235566677777777777777777777766666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH----------------------------HHHhccCchHHHHHHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----------------------------AIEQVRDSPVLYTNRAL 167 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------------------~~~~~~~~~~~~~~la~ 167 (240)
++..++.++...|++++|+..++++++..|.+... .+...|.....+..+|.
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 222 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGD 222 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHH
Confidence 66667777777777777777777766665543211 01111122223555555
Q ss_pred HHHHhcccCchhhHHHHHhhcChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 168 TLLHLQLYDPVLPDCDKALRLDEDN-MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
++...|++++|++.++++++.+|.+ ..++..++.++...|++++|+..++++++..|+.
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 5555555555555555555554443 2334455555555555555555555555555544
No 27
>KOG1125|consensus
Probab=99.87 E-value=5.6e-21 Score=146.59 Aligned_cols=189 Identities=15% Similarity=0.157 Sum_probs=174.1
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG 128 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 128 (240)
-+..|..+++.|+..+|.-.|+.++..+|++.++|..||.++...++-..|+..++++++++|++..++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCchHH------------------------------HHHhcc--CchHHHHHHHHHHHHhcccC
Q psy17412 129 QREEAKEYVRQLVEKYPTRRKL------------------------------AIEQVR--DSPVLYTNRALTLLHLQLYD 176 (240)
Q Consensus 129 ~~~~A~~~~~~a~~~~~~~~~~------------------------------~~~~~~--~~~~~~~~la~~~~~~~~~~ 176 (240)
.-.+|..++.+.+...|..... +....+ .++++...||.+|.-.|+|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999999998877543221 233334 68999999999999999999
Q ss_pred chhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 177 PVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 177 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
+|+.+|+.+|...|++...|..+|-.+..-.+..+|+..|.+++++.|....++.+++.+.
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999998888654
No 28
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.87 E-value=1.5e-20 Score=137.01 Aligned_cols=185 Identities=17% Similarity=0.169 Sum_probs=158.7
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH--
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP---VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK-- 115 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-- 115 (240)
..+..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4566788999999999999999999999999999999875 57899999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCchHHH--H----HhccCchHHHHHHHHHHHHhcccCchhh
Q psy17412 116 -AHLYKARAMHSL--------GQREEAKEYVRQLVEKYPTRRKLA--I----EQVRDSPVLYTNRALTLLHLQLYDPVLP 180 (240)
Q Consensus 116 -~~~~la~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (240)
+++.+|.++... |++++|+..++++++.+|++.... . ............+|.++...|++.+|+.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 789999999886 889999999999999999986541 0 0001111223578899999999999999
Q ss_pred HHHHHhhcChh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 181 DCDKALRLDED---NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 181 ~~~~~l~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
.+.++++..|+ .+.+++.+|.++..+|++++|..+++.+....|+
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999775 4689999999999999999999999888777663
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.1e-19 Score=142.29 Aligned_cols=184 Identities=16% Similarity=0.053 Sum_probs=150.8
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP-----VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 116 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 116 (240)
.+.....+..++.++...|++++|++.++++++..|.+. ..+..+|.++...|++++|+..++++++..|+...+
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 216 (389)
T PRK11788 137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRA 216 (389)
T ss_pred CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH
Confidence 555667777888888888888888888888887766542 245677888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHH
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
+..+|.++...|++++|+..++++++..|.+. ...+..++.++...|++++|+..++++++..|+... .
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~ 285 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEEQDPEYL----------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-L 285 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-H
Confidence 88888888888888888888888888777642 223788999999999999999999999999998654 4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
..++.++...|++++|+..++++++.+|++......+...
T Consensus 286 ~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 286 LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence 8899999999999999999999999999988766555443
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=9.9e-20 Score=153.84 Aligned_cols=186 Identities=16% Similarity=0.101 Sum_probs=161.9
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
...|+.. ....+|..+...|++++|+..|++++...|.. ..+..+|.++...|++++|..+++++++..|........
T Consensus 504 ~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~ 581 (987)
T PRK09782 504 QRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW 581 (987)
T ss_pred HhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH
Confidence 3344433 35566777788999999999999987765554 456788899999999999999999999998888877777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
++.....+|++++|+..++++++++|+ ... +.++|.++.+.|++++|+..+.+++..+|+++.++.++
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a-----------~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nL 649 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAPS-ANA-----------YVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAAL 649 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC-HHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 777777789999999999999999996 666 99999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 200 ARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
|.++...|++++|+..|+++++.+|+++.++..++.++..
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987753
No 31
>KOG0548|consensus
Probab=99.86 E-value=2.8e-20 Score=141.67 Aligned_cols=191 Identities=33% Similarity=0.467 Sum_probs=177.7
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG 128 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 128 (240)
....|+..++.|+|+.|+.+|..++.++|.+...+.++..+|..+|+|++|++.-.+.++++|+.+..|..+|..+..+|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCchHH----------------------------------------------------------
Q psy17412 129 QREEAKEYVRQLVEKYPTRRKL---------------------------------------------------------- 150 (240)
Q Consensus 129 ~~~~A~~~~~~a~~~~~~~~~~---------------------------------------------------------- 150 (240)
+|++|+..|.+.++.+|++...
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999999999999987654
Q ss_pred --------------------------------------------------------------------------------
Q psy17412 151 -------------------------------------------------------------------------------- 150 (240)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (240)
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy17412 151 -------------------------------------------------------------------------------- 150 (240)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (240)
T Consensus 245 q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 245 QHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------------HHHhccCchHHHHHHHHHHHH
Q psy17412 151 -----------------------------------------------------------AIEQVRDSPVLYTNRALTLLH 171 (240)
Q Consensus 151 -----------------------------------------------------------~~~~~~~~~~~~~~la~~~~~ 171 (240)
++...|+++..|.++|.||.+
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLK 404 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 566678899999999999999
Q ss_pred hcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 172 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
+|.+..|+...+.+++++|++..+|+..|.++..+.+|++|.+.|.++++.+|++.++...+.+|+++
T Consensus 405 L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 405 LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888763
No 32
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.86 E-value=6.1e-19 Score=121.33 Aligned_cols=184 Identities=15% Similarity=0.115 Sum_probs=170.7
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc--CcccHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--DEDNMK 115 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 115 (240)
....+|....+|..+|.+|...|+.+.|.+.|+++++++|++.+++.+.|..++..|++++|...|++++.. .+..+.
T Consensus 61 AL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~ 140 (250)
T COG3063 61 ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSD 140 (250)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcch
Confidence 567899999999999999999999999999999999999999999999999999999999999999999974 255678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
.+-++|.|..++|+++.|..+|+++++.+|+.+.. ...++...++.|+|..|..++++.....+-....
T Consensus 141 t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~-----------~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~s 209 (250)
T COG3063 141 TLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA-----------LLELARLHYKAGDYAPARLYLERYQQRGGAQAES 209 (250)
T ss_pred hhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH-----------HHHHHHHHHhcccchHHHHHHHHHHhcccccHHH
Confidence 99999999999999999999999999999999888 9999999999999999999999998887777888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
+....++....|+-+.+-.+=.+..+.+|.+++....
T Consensus 210 L~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 210 LLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 8888889999999999999999999999998876543
No 33
>KOG0624|consensus
Probab=99.85 E-value=1.9e-18 Score=125.62 Aligned_cols=192 Identities=21% Similarity=0.243 Sum_probs=173.2
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
.++..++..+.+|..++..|++..|+..|..+++.+|++..+++.+|.+|+.+|+..-|+..+.+++++.|+..-+....
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 45668888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHH--------------------------------------HHHhccCchHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKL--------------------------------------AIEQVRDSPVLY 162 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------------------------------------~~~~~~~~~~~~ 162 (240)
|.+++++|.+++|...|+.++..+|++... .+...|.++.++
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 999999999999999999999999965433 233346677888
Q ss_pred HHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
...+.||...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+-.
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~ 262 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF 262 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH
Confidence 8899999999999999999999999888899999999999999999999999999999999988654433
No 34
>PLN02789 farnesyltranstransferase
Probab=99.85 E-value=8.4e-19 Score=131.44 Aligned_cols=191 Identities=16% Similarity=0.102 Sum_probs=172.7
Q ss_pred HHHhchhHHHHHHHhHhHHHHhC-CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCc--CchHHHHHHHHhcCcccH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSG-QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLY--DPVLPDCDKALRLDEDNM 114 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~~~~ 114 (240)
....+|.+..+|..+|.++...| ++++++..+++++..+|++..+|..++.+....|+. ++++.+++++++.+|.+.
T Consensus 63 aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy 142 (320)
T PLN02789 63 VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY 142 (320)
T ss_pred HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH
Confidence 45678999999999999999998 689999999999999999999999999999999874 678999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh---ccc----CchhhHHHHHhh
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL---QLY----DPVLPDCDKALR 187 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~----~~A~~~~~~~l~ 187 (240)
.+|..++.++...|++++++..+.++++.+|.+..+ |..++.+..+. |.+ ++++.+..+++.
T Consensus 143 ~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA-----------W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~ 211 (320)
T PLN02789 143 HAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA-----------WNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL 211 (320)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH-----------HHHHHHHHHhccccccccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888 99999888776 333 368888899999
Q ss_pred cChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 188 LDEDNMKAHLYKARAMHN----LGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 188 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
.+|++..+|..++.++.. +++..+|...+.+++...|.++.+...++.++..
T Consensus 212 ~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 212 ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 999999999999999988 5667889999999999999999888888887753
No 35
>PLN02789 farnesyltranstransferase
Probab=99.85 E-value=3.1e-19 Score=133.78 Aligned_cols=176 Identities=15% Similarity=0.134 Sum_probs=160.9
Q ss_pred HhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc-CcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH-
Q psy17412 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ-LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQR- 130 (240)
Q Consensus 53 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~- 130 (240)
-.++...+.+++|+..+.+++..+|++..+|..++.++..+| ++++++..+.++++.+|++..+|..++.+...+|+.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 344567789999999999999999999999999999999998 689999999999999999999999999999999874
Q ss_pred -HHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHc---
Q psy17412 131 -EEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNL--- 206 (240)
Q Consensus 131 -~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~--- 206 (240)
++++..++++++.+|++..+ |..++.++...|+++++++++.++++.+|.+..+|..++.+...+
T Consensus 124 ~~~el~~~~kal~~dpkNy~A-----------W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHA-----------WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHH-----------HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence 78899999999999999888 999999999999999999999999999999999999999998776
Q ss_pred CCH----HHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 207 GQR----EEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 207 g~~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
|.+ ++++.+..+++..+|++..+|..++.++..
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 333 578899999999999999999998887753
No 36
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.84 E-value=2.6e-19 Score=119.81 Aligned_cols=123 Identities=17% Similarity=0.085 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchh
Q psy17412 100 LPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179 (240)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 179 (240)
...++++++++|++ ++.+|.++...|++++|+..|++++..+|.+... +..+|.++...|++++|+
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a-----------~~~lg~~~~~~g~~~~A~ 78 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRA-----------HIALAGTWMMLKEYTTAI 78 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH-----------HHHHHHHHHHHhhHHHHH
Confidence 34566666666654 4455666666666666666666666666666555 666666666666666666
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
..|.+++..+|+++.+++++|.++..+|++++|+..|++++...|+++..+...+.+
T Consensus 79 ~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 79 NFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666555443
No 37
>KOG1129|consensus
Probab=99.84 E-value=7.3e-20 Score=132.04 Aligned_cols=191 Identities=17% Similarity=0.116 Sum_probs=121.0
Q ss_pred HHHHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH
Q psy17412 36 FEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 115 (240)
Q Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 115 (240)
++........++.+..++.+|.+..+...|+..|.+.++..|.+...+...+.++..++++++|.++|+.+++.+|.+.+
T Consensus 246 lqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 246 LQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred HHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce
Confidence 33333344444555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh---hh
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE---DN 192 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~---~~ 192 (240)
+...+|..|+.-++.+-|+.+|++++.+.-.++ .++.++|.|++..++++-++..|++++.... .-
T Consensus 326 aiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp-----------eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a 394 (478)
T KOG1129|consen 326 AIACIAVGYFYDNNPEMALRYYRRILQMGAQSP-----------ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA 394 (478)
T ss_pred eeeeeeeccccCCChHHHHHHHHHHHHhcCCCh-----------HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh
Confidence 444445555555555555555555555544444 4488888888888888888888888876533 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
.++|+++|.+....|++.-|..+|+-++..++++.++..+++.+-
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~ 439 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLA 439 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHH
Confidence 678888888888888888888888888888888888888887653
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.83 E-value=4.4e-20 Score=137.96 Aligned_cols=183 Identities=23% Similarity=0.227 Sum_probs=94.7
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC--cccHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD--EDNMKAHLYKA 121 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la 121 (240)
..+..+..++.. ...+++++|+.++.++.+..+ ++..+.....++...++++++...++++.... +.++..+..+|
T Consensus 76 ~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a 153 (280)
T PF13429_consen 76 ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALA 153 (280)
T ss_dssp --------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHH
T ss_pred cccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 344555555555 577777777777777766553 34555566666777777777777777765444 45666777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 201 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 201 (240)
.++.+.|++++|+..++++++.+|+++.. ...++.++...|+++++...+....+..|+++..+..+|.
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~P~~~~~-----------~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELDPDDPDA-----------RNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA 222 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH-TT-HHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHH-----------HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 77777777777777777777777777666 7777777777777777777776666666666677777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 202 AMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
++..+|++++|+.+|++++..+|+++.+...++.++.+
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred Hhcccccccccccccccccccccccccccccccccccc
Confidence 77777777777777777777777777777777766643
No 39
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.83 E-value=1.1e-19 Score=121.57 Aligned_cols=125 Identities=8% Similarity=-0.025 Sum_probs=86.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 67 VQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 67 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
..++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4566666666653 4456677777777777777777777777777777777777777777777777777777777776
Q ss_pred chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHH
Q psy17412 147 RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN 205 (240)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 205 (240)
++.. ++++|.++...|++++|+..|.++++..|+++..+..++.+...
T Consensus 91 ~~~a-----------~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 91 HPEP-----------VYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CcHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 6666 77777777777777777777777777777777666666665543
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.83 E-value=7.2e-20 Score=136.81 Aligned_cols=170 Identities=26% Similarity=0.296 Sum_probs=122.8
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQV--RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
....+..+.....++...++++++...++++.... +.++.+|..+|.++.+.|+.++|+..++++++.+|+++.+...
T Consensus 106 ~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~ 185 (280)
T PF13429_consen 106 RDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNA 185 (280)
T ss_dssp ------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 44566777778888999999999999999977654 6778899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
++.++...|+++++...++...+..|.++.. +..+|.++..+|++++|+.+++++++.+|+++.++..+
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~ 254 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAAPDDPDL-----------WDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAY 254 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH-HTSCCH-----------CHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHCcCHHHH-----------HHHHHHHhcccccccccccccccccccccccccccccc
Confidence 9999999999999999998888887777766 99999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 200 ARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
|.++...|+.++|..++++++..
T Consensus 255 a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 255 ADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHT------------------
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999999999988753
No 41
>KOG2002|consensus
Probab=99.83 E-value=1.2e-18 Score=140.82 Aligned_cols=201 Identities=13% Similarity=0.141 Sum_probs=178.4
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 116 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 116 (240)
-....|+++..++..|.+.+..|+|..|+.+|++++..+|.. +.....+|.|+.++|+.+.|+..|.++++++|.++.+
T Consensus 156 Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~a 235 (1018)
T KOG2002|consen 156 VLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSA 235 (1018)
T ss_pred HHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHH
Confidence 456789999999999999999999999999999999999976 5677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCchHH-----------------------HHHhc---cCchHHHHHHHH
Q psy17412 117 HLYKARAMHSLG---QREEAKEYVRQLVEKYPTRRKL-----------------------AIEQV---RDSPVLYTNRAL 167 (240)
Q Consensus 117 ~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~---~~~~~~~~~la~ 167 (240)
+..||.+-.... .+..++..+.++...++.+|.+ ++... +..+..++.+|.
T Consensus 236 lv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 236 LVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 999998776554 5678999999999999999887 11111 123466899999
Q ss_pred HHHHhcccCchhhHHHHHhhcChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 168 TLLHLQLYDPVLPDCDKALRLDEDN-MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+|..+|+|++|..+|.++++.+|++ .-.++.+|..++..|+.+.|+.+|++++...|++.+....++.++.
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 9999999999999999999999988 7789999999999999999999999999999999999988888765
No 42
>KOG2076|consensus
Probab=99.82 E-value=1.2e-17 Score=134.31 Aligned_cols=203 Identities=19% Similarity=0.117 Sum_probs=178.4
Q ss_pred HHHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHH
Q psy17412 37 EERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 116 (240)
Q Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 116 (240)
+-...+|..+.+|+.+|.+|..+|+.+++....-.|-.++|++...|..++....++|++++|.-+|.++++.+|.+.+.
T Consensus 164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~ 243 (895)
T KOG2076|consen 164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWEL 243 (895)
T ss_pred HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH----------------------------------------------
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL---------------------------------------------- 150 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------------------------------- 150 (240)
.+..+.++.++|+...|...+.+++...|.....
T Consensus 244 ~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~a 323 (895)
T KOG2076|consen 244 IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILA 323 (895)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 9999999999999999999999999998822110
Q ss_pred --------------------------------------------------------------------------------
Q psy17412 151 -------------------------------------------------------------------------------- 150 (240)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (240)
T Consensus 324 el~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l 403 (895)
T KOG2076|consen 324 ELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFL 403 (895)
T ss_pred HHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHH
Confidence
Q ss_pred HHHh--ccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 151 AIEQ--VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 151 ~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
.... ..+.++.+..++..+...|+|.+|+.++..+....+. +..+|+.+|.||..+|.+++|+.+|++++...|++.
T Consensus 404 ~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~ 483 (895)
T KOG2076|consen 404 VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL 483 (895)
T ss_pred HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch
Confidence 0000 1235688999999999999999999999999887664 467899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q psy17412 228 KLVENYTQAFEQ 239 (240)
Q Consensus 228 ~~~~~l~~~~~~ 239 (240)
+++..++.++.+
T Consensus 484 D~Ri~Lasl~~~ 495 (895)
T KOG2076|consen 484 DARITLASLYQQ 495 (895)
T ss_pred hhhhhHHHHHHh
Confidence 999999888764
No 43
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.82 E-value=3e-18 Score=120.54 Aligned_cols=127 Identities=17% Similarity=0.112 Sum_probs=102.4
Q ss_pred ccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHH-HH
Q psy17412 93 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL-LH 171 (240)
Q Consensus 93 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~ 171 (240)
.++.++++..+++++..+|+++..|..+|.++...|++++|+..|++++++.|+++.. +..+|.++ ..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~-----------~~~lA~aL~~~ 120 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAEL-----------YAALATVLYYQ 120 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHh
Confidence 5566777888888888888888888888888888888888888888888888887777 88888864 56
Q ss_pred hcc--cCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q psy17412 172 LQL--YDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLV 230 (240)
Q Consensus 172 ~~~--~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 230 (240)
.|+ +++|...++++++.+|+++.++..+|..+...|++++|+.+|+++++..|.+.+-.
T Consensus 121 ~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 121 AGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred cCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 666 47888888888888888888888888888888888888888888888877665433
No 44
>KOG1129|consensus
Probab=99.80 E-value=6.3e-19 Score=127.26 Aligned_cols=189 Identities=10% Similarity=-0.033 Sum_probs=176.2
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
-....|.+.-.+..++.++...+++++|.++|+.+++.+|.+.++...+|.-|+..++.+-|+.+|++.++..-.+++.+
T Consensus 282 gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf 361 (478)
T KOG1129|consen 282 GLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELF 361 (478)
T ss_pred hhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHH
Confidence 34567888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
.++|.|++..++++-++..|++++....+.... +++|+++|.+....|++.-|..+|.-++..++++..++.
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a--------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealn 433 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA--------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALN 433 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHHHHHhhccCcchh--------hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHH
Confidence 999999999999999999999999987765544 778999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
++|.+-.+.|+.++|..++..+....|+-.+...+++
T Consensus 434 NLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 434 NLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred hHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 9999999999999999999999999998777666654
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.80 E-value=7.4e-18 Score=126.44 Aligned_cols=154 Identities=21% Similarity=0.179 Sum_probs=133.9
Q ss_pred HhCCHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Q psy17412 58 QSGQYEAALVQYDKAIEQVR----DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEA 133 (240)
Q Consensus 58 ~~~~~~~A~~~~~~a~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 133 (240)
..+..+.++..+.+++...| ..+..|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34567889999999997544 23678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHH
Q psy17412 134 KEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAK 213 (240)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 213 (240)
+..|+++++++|++... +.++|.++...|++++|++.++++++.+|+++..... ..+....+++++|+
T Consensus 118 ~~~~~~Al~l~P~~~~a-----------~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~ 185 (296)
T PRK11189 118 YEAFDSVLELDPTYNYA-----------YLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAK 185 (296)
T ss_pred HHHHHHHHHhCCCCHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHH
Confidence 99999999999999888 9999999999999999999999999999998742222 22345678899999
Q ss_pred HHHHHHHHhC
Q psy17412 214 EYIRELVEKY 223 (240)
Q Consensus 214 ~~~~~~~~~~ 223 (240)
..+.+.....
T Consensus 186 ~~l~~~~~~~ 195 (296)
T PRK11189 186 ENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhhC
Confidence 9997766543
No 46
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=4e-17 Score=137.17 Aligned_cols=170 Identities=13% Similarity=0.066 Sum_probs=154.7
Q ss_pred HhHhHHHHhCCHHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc--------------
Q psy17412 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDS----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-------------- 112 (240)
Q Consensus 51 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------------- 112 (240)
.+|..+...|++++|+..|+++++..|.+ ......++.++...|++++|+..++++....|.
T Consensus 277 ~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 277 WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 35889999999999999999999888765 345677888889999999999999999988762
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 113 -NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 113 -~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
...++..+|.++...|++++|+..+++++...|.+... +..+|.++...|++++|++.+++++..+|+
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l-----------~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGL-----------RIDYASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 24577889999999999999999999999999999887 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 192 NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
+..+++.+|.++...|++++|...++++++..|+++.+..
T Consensus 426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 426 NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999999999999999987643
No 47
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=2.9e-17 Score=136.57 Aligned_cols=186 Identities=12% Similarity=0.010 Sum_probs=162.7
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
..|..+...+..+...++.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|........+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 35567889999999999999999999999999999999964444888899999999999999999995445555566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
|.++..+|++++|+..|+++++.+|+++.. +..++.++...++.++|++.++++...+|+.... ..++
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~-----------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~la 176 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDL-----------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLS 176 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-----------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHH
Confidence 889999999999999999999999999887 8888999999999999999999999999985554 5666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 201 RAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.++...++..+|+..+++++..+|+++++...+..++.
T Consensus 177 yL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~ 214 (822)
T PRK14574 177 YLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQ 214 (822)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 66666888878999999999999999999888877654
No 48
>KOG0553|consensus
Probab=99.78 E-value=6.5e-18 Score=120.75 Aligned_cols=124 Identities=29% Similarity=0.385 Sum_probs=116.4
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
....++.+-..|+-+++.++|.+|+..|.+||+++|.++..|.+++.+|.++|.++.|++.++.++.++|.+.++|..+|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccC
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD 176 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 176 (240)
.+|..+|++.+|+..|+++++++|++... +.+|..+-.+.++..
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~-----------K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNESY-----------KSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHHH-----------HHHHHHHHHHhcCCC
Confidence 99999999999999999999999999877 888887777776665
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.2e-16 Score=115.24 Aligned_cols=195 Identities=16% Similarity=0.122 Sum_probs=163.0
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 112 (240)
-...++...+..+.+|+.+.+.|..+.||.+-+..+. .|+. ..+...+|.-|+..|-++.|...|........-
T Consensus 61 ~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef 139 (389)
T COG2956 61 MLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF 139 (389)
T ss_pred HHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh
Confidence 4556788899999999999999999999988766554 3443 457888999999999999999999988876555
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 113 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
-..+...+..+|....+|++|++.-++..++.++.... ..+..+..++..+....+.+.|+..+.++++.+|++
T Consensus 140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~------eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c 213 (389)
T COG2956 140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV------EIAQFYCELAQQALASSDVDRARELLKKALQADKKC 213 (389)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc
Confidence 56788889999999999999999999999998876554 335568888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHhhhc
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR-RKLVENYTQAFEQ 239 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~ 239 (240)
+.+-..+|.+....|++..|++.++.+++.+|+. +++...+..++.+
T Consensus 214 vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 214 VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875 5566666666543
No 50
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.78 E-value=8.3e-17 Score=131.66 Aligned_cols=164 Identities=8% Similarity=-0.020 Sum_probs=145.7
Q ss_pred HHHHhCCHHHHHHHHHHH---HHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Q psy17412 55 KAFQSGQYEAALVQYDKA---IEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQRE 131 (240)
Q Consensus 55 ~~~~~~~~~~A~~~~~~a---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 131 (240)
+....+....+.+.+-++ ...+|+++.++.++|.+....|.+++|...++.++++.|++..++..++.++.++++++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~e 137 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIE 137 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHH
Confidence 334444444444333333 44578889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHH
Q psy17412 132 EAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREE 211 (240)
Q Consensus 132 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 211 (240)
+|+..+++++...|++... ++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++
T Consensus 138 eA~~~~~~~l~~~p~~~~~-----------~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 138 AGRAEIELYFSGGSSSARE-----------ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWR 206 (694)
T ss_pred HHHHHHHHHhhcCCCCHHH-----------HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999888 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHH
Q psy17412 212 AKEYIRELVEKYPTRRKL 229 (240)
Q Consensus 212 A~~~~~~~~~~~p~~~~~ 229 (240)
|...|++++....+....
T Consensus 207 A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 207 ARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHHhhCcchHH
Confidence 999999999887665443
No 51
>KOG2003|consensus
Probab=99.77 E-value=1.4e-16 Score=120.25 Aligned_cols=199 Identities=17% Similarity=0.134 Sum_probs=175.5
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
+...+.-++.++.+.|++.+..|++++|.+.|++++..+.....+++++|..+..+|+.++|+.+|-+...+--++.+++
T Consensus 482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl 561 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVL 561 (840)
T ss_pred HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHH
Confidence 34455667888999999999999999999999999999888889999999999999999999999999887777889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCchHHHHHHHHHHHHhcc
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDSPVLYTNRALTLLHLQL 174 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~~~~~~la~~~~~~~~ 174 (240)
+.++.+|..+.+..+|++++-++..+-|+++.. ....+|.+....-.+|..|....-
T Consensus 562 ~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999998876 122234556777888999999999
Q ss_pred cCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 175 YDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 175 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+++|+.+|+++--+.|+.......++.|+.+.|+|.+|...|+...+..|.+.+....+.++
T Consensus 642 ~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 642 SEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 99999999999999999998889999999999999999999999999999998887777665
No 52
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.77 E-value=3.3e-17 Score=109.15 Aligned_cols=120 Identities=19% Similarity=0.217 Sum_probs=103.1
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhh
Q psy17412 101 PDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 180 (240)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (240)
+.+++++..+|++..+.+.+|.++...|++++|...+++++..+|.++.. +..+|.++...|++++|..
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------~~~la~~~~~~~~~~~A~~ 72 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRY-----------WLGLAACCQMLKEYEEAID 72 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888888888888888888887777 8888888888888888888
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 181 DCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
.++++++.+|+++..++.+|.++...|++++|+..++++++.+|++.....
T Consensus 73 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 73 AYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 888888888888888888888888889999999999888888888876443
No 53
>KOG2002|consensus
Probab=99.77 E-value=1.5e-16 Score=129.07 Aligned_cols=194 Identities=14% Similarity=0.141 Sum_probs=173.1
Q ss_pred HHHHhchhHHHHHHHhHhHHHHhC---CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC---
Q psy17412 37 EERKARQDIADHFKANGNKAFQSG---QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD--- 110 (240)
Q Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--- 110 (240)
.....+|..+.++..+|.+..... .+..+...+.++...++.+|.+...++..++..|+|..+......++...
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 345667888899999888877655 47789999999999999999999999999999999999999999988765
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh
Q psy17412 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 111 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 190 (240)
+--++.++.+|.++..+|+|++|..+|.++++.+|++... .++.+|++++..|+++.|..+|+++++..|
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l----------~~~GlgQm~i~~~dle~s~~~fEkv~k~~p 373 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL----------PLVGLGQMYIKRGDLEESKFCFEKVLKQLP 373 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc----------cccchhHHHHHhchHHHHHHHHHHHHHhCc
Confidence 3335679999999999999999999999999999997222 289999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhcC
Q psy17412 191 DNMKAHLYKARAMHNLG----QREEAKEYIRELVEKYPTRRKLVENYTQAFEQE 240 (240)
Q Consensus 191 ~~~~~~~~la~~~~~~g----~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 240 (240)
++......+|.+|...+ ..+.|..+..++++..|.+.++|..+++++++.
T Consensus 374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 99999999999999886 678999999999999999999999999998863
No 54
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.76 E-value=3.2e-17 Score=115.37 Aligned_cols=125 Identities=17% Similarity=0.127 Sum_probs=117.6
Q ss_pred hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH-HHcCC--HHHHHH
Q psy17412 59 SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM-HSLGQ--REEAKE 135 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~--~~~A~~ 135 (240)
.++.++++..+++++..+|+++..|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHH
Q psy17412 136 YVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 194 (240)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 194 (240)
.++++++.+|++... ++.+|..++..|++++|+.+++++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~a-----------l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTA-----------LMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhH-----------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999888 999999999999999999999999999886543
No 55
>KOG0624|consensus
Probab=99.76 E-value=1.8e-16 Score=115.40 Aligned_cols=190 Identities=15% Similarity=0.161 Sum_probs=166.9
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 126 (240)
..+......++..|++..|+++....++..|-++..+..++.||...|+...|+..++.+-++..++.+.++.++.+++.
T Consensus 156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 156 WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence 34445566677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHH-----------------------------------HHHhccCch----HHHHHHHH
Q psy17412 127 LGQREEAKEYVRQLVEKYPTRRKL-----------------------------------AIEQVRDSP----VLYTNRAL 167 (240)
Q Consensus 127 ~~~~~~A~~~~~~a~~~~~~~~~~-----------------------------------~~~~~~~~~----~~~~~la~ 167 (240)
.|+.+.++...+.+++++|++... .+...|..+ .....+..
T Consensus 236 vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 999999999999999999987544 122223322 33445677
Q ss_pred HHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
|+...+++.+|+..+.+++..+|+++.++...+.+|+....|+.|+..|+++.+.++++..+...+.++
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~A 384 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERA 384 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 888889999999999999999999999999999999999999999999999999999999888776553
No 56
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.76 E-value=8.9e-17 Score=117.23 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=135.3
Q ss_pred cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHH
Q psy17412 76 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM---KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAI 152 (240)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 152 (240)
++..+..++.+|..++..|++++|+..+++++...|+++ .+++.+|.++...|++++|+..++++++..|+++..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-- 106 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA-- 106 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch--
Confidence 345678999999999999999999999999999999875 588999999999999999999999999999987764
Q ss_pred HhccCchHHHHHHHHHHHHh--------cccCchhhHHHHHhhcChhhHHHH-----------------HHHHHHHHHcC
Q psy17412 153 EQVRDSPVLYTNRALTLLHL--------QLYDPVLPDCDKALRLDEDNMKAH-----------------LYKARAMHNLG 207 (240)
Q Consensus 153 ~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~~l~~~~~~~~~~-----------------~~la~~~~~~g 207 (240)
...++.+|.++... |++++|++.++++++.+|++...+ ..+|.++...|
T Consensus 107 ------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 107 ------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG 180 (235)
T ss_pred ------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34588999999876 889999999999999999875432 36788899999
Q ss_pred CHHHHHHHHHHHHHhCCCc---HHHHHHHHHhhh
Q psy17412 208 QREEAKEYIRELVEKYPTR---RKLVENYTQAFE 238 (240)
Q Consensus 208 ~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 238 (240)
++.+|+..+++++...|++ ++++..++.++.
T Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~ 214 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTPATEEALARLVEAYL 214 (235)
T ss_pred ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH
Confidence 9999999999999998765 478888887765
No 57
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.75 E-value=2.7e-16 Score=110.53 Aligned_cols=171 Identities=15% Similarity=0.094 Sum_probs=159.2
Q ss_pred HHHHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH
Q psy17412 36 FEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 115 (240)
Q Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 115 (240)
......+|.+... ...+..+...|+-+.+..+..++...+|.+..+....|...+..|++..|+..++++..+.|++++
T Consensus 57 ~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~ 135 (257)
T COG5010 57 GAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE 135 (257)
T ss_pred HHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh
Confidence 3455667777888 889999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
+|..+|.+|.+.|++++|...|.+++++.|+++.. ..|+|..+.-.|+++.|..++..+....+.+..+
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~-----------~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v 204 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELAPNEPSI-----------ANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRV 204 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhccCCchh-----------hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHH
Confidence 99999999999999999999999999999999888 9999999999999999999999999988889999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRE 218 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~ 218 (240)
..+++.+....|++++|.....+
T Consensus 205 ~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 205 RQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHhhcCChHHHHhhccc
Confidence 99999999999999999887654
No 58
>KOG0550|consensus
Probab=99.75 E-value=3.9e-17 Score=121.18 Aligned_cols=181 Identities=22% Similarity=0.239 Sum_probs=162.7
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH----------
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK---------- 115 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------- 115 (240)
...-...+.++...|++++|...--..+++++.+..+++..|.|++..++.+.|+..|++++.++|+...
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK 248 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH
Confidence 3455667888999999999999999999999999999999999999999999999999999999987643
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH
Q psy17412 116 --AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 193 (240)
Q Consensus 116 --~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 193 (240)
.+...|.-.++.|++.+|.+.|..++.++|++... .+.+|.++|.+..++|+..+|+..++.+++++|...
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~-------naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi 321 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT-------NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI 321 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch-------hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH
Confidence 56778899999999999999999999999997654 456799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
.++...|.++..++++++|++.|+++++...+ .+.+..+.
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence 99999999999999999999999999998766 44444333
No 59
>KOG3060|consensus
Probab=99.75 E-value=1e-15 Score=106.98 Aligned_cols=183 Identities=14% Similarity=0.102 Sum_probs=165.5
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
..++....+.....+....|+.+-|..++++.....|.+..+-...|..+...|++++|+++|+..++-+|.+...+...
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK 126 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK 126 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence 34556667777788888999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
-.+...+|+..+|++.+...++..+.|.++ |..++.+|...|+|++|.-+++.++-..|.++..+..+|
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~F~~D~EA-----------W~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rla 195 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDKFMNDQEA-----------WHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLA 195 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHhcCcHHH-----------HHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 889999999999999999999999999888 999999999999999999999999999999999999999
Q ss_pred HHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 201 RAMHNLG---QREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 201 ~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
.+++-+| +..-|.++|.+++++.|.+...+..+-
T Consensus 196 e~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 196 EVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 9988877 556799999999999997766655543
No 60
>KOG2003|consensus
Probab=99.75 E-value=5.2e-17 Score=122.47 Aligned_cols=191 Identities=15% Similarity=0.062 Sum_probs=133.7
Q ss_pred HHHHHhHhHHHHh--CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 47 DHFKANGNKAFQS--GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 47 ~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
.+-.++...++-+ .++..|..+-+.++..+.-++.+..+.|.+-+..|++++|.+.|+.++..+....++++++|..+
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~ 534 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTA 534 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH
Confidence 3344444454543 37999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCchHHHHHHHHHHHHhcccCchhhH
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 181 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 181 (240)
..+|+.++|+.+|-+.-.+--++... +....|.+|.++..+|.+|-+.|+-.+|.++
T Consensus 535 e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 99999999999998877665555554 1222344455555555555555555555555
Q ss_pred HHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 182 CDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 182 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
+-......|.+.+..-++|..|+...-.++|+.+|+++--+.|+...+...++.|+
T Consensus 615 ~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 615 HYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred hhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 54445555555555555555555555555555566555555555555444444443
No 61
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=4.4e-15 Score=116.04 Aligned_cols=192 Identities=14% Similarity=0.082 Sum_probs=148.9
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV-LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 125 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 125 (240)
-.+...+......|+++.|..++.++.+..|+... .....+.++...|++++|...+++..+..|+++.++..++.++.
T Consensus 119 l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~ 198 (398)
T PRK10747 119 VNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYI 198 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 33444466669999999999999999999998753 33445899999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCchHH---------------------------H----HHhccCchHHHHHHHHHHHHhcc
Q psy17412 126 SLGQREEAKEYVRQLVEKYPTRRKL---------------------------A----IEQVRDSPVLYTNRALTLLHLQL 174 (240)
Q Consensus 126 ~~~~~~~A~~~~~~a~~~~~~~~~~---------------------------~----~~~~~~~~~~~~~la~~~~~~~~ 174 (240)
..|++++|+..+.+..+..+.++.. . ....++++.+...++..+...|+
T Consensus 199 ~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 199 RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC
Confidence 9999999998888888765543221 0 01233466667777777777777
Q ss_pred cCchhhHHHHHhh-------------------------------cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 175 YDPVLPDCDKALR-------------------------------LDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 175 ~~~A~~~~~~~l~-------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
.++|...++++++ .+|+++..+..+|.++...|++++|.++|+++++..
T Consensus 279 ~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 279 HDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 6666666666555 346667778888999999999999999999999998
Q ss_pred CCcHHHHHHHHHhhhc
Q psy17412 224 PTRRKLVENYTQAFEQ 239 (240)
Q Consensus 224 p~~~~~~~~l~~~~~~ 239 (240)
|++.. +..+++++++
T Consensus 359 P~~~~-~~~La~~~~~ 373 (398)
T PRK10747 359 PDAYD-YAWLADALDR 373 (398)
T ss_pred CCHHH-HHHHHHHHHH
Confidence 88755 3456666553
No 62
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=7e-16 Score=129.74 Aligned_cols=184 Identities=9% Similarity=-0.048 Sum_probs=153.8
Q ss_pred HHHHhCCHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHccCcCchHHHHHHHHhcCccc----HHHHHHHHHHHHHcCC
Q psy17412 55 KAFQSGQYEAALVQYDKAIEQVRDSP-VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN----MKAHLYKARAMHSLGQ 129 (240)
Q Consensus 55 ~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~ 129 (240)
.++..|++++|+..|+++++..|..+ .+...+|.+|...|++++|+..|++++...|.+ ......++.++...|+
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 45688999999999999998864322 234446999999999999999999999888765 3567778888999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHH--HHhccCc--hHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHH
Q psy17412 130 REEAKEYVRQLVEKYPTRRKLA--IEQVRDS--PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN 205 (240)
Q Consensus 130 ~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 205 (240)
+++|+..++++....|...... ....|++ ..++..+|.++...|++++|+..+++++...|++..++..+|.++..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 9999999999999988643220 1112221 24578899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 206 LGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.|++++|+..+++++..+|++..++...+.+..
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 999999999999999999999888887776543
No 63
>KOG1173|consensus
Probab=99.74 E-value=2.1e-16 Score=121.54 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=165.8
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc----------------------------------CCChHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQV----------------------------------RDSPVLYTNRA 87 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~~~~~~~la 87 (240)
...+.+.+...+..++..++|.+..+..+..++.+ |+.+..|+..|
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 34455666666666666777777666666666654 55567899999
Q ss_pred HHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------
Q psy17412 88 LTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----------------- 150 (240)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------- 150 (240)
..|...|++.+|..+|.|+..++|....+|...|..+...|..++|+.+|..|-++.|.....
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 999999999999999999999999999999999999999999999999999999998875432
Q ss_pred ------HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh-------hhHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 151 ------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE-------DNMKAHLYKARAMHNLGQREEAKEYIR 217 (240)
Q Consensus 151 ------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~ 217 (240)
+....|.+|.++..+|.+.+..+.|.+|..+|+.++..-+ .....+.++|.++.+++.+++|+.+++
T Consensus 400 e~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 400 EKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 5666789999999999999999999999999999984322 245678999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHhh
Q psy17412 218 ELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 218 ~~~~~~p~~~~~~~~l~~~~ 237 (240)
+++.+.|.++.++..++-++
T Consensus 480 ~aL~l~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIY 499 (611)
T ss_pred HHHHcCCCchhHHHHHHHHH
Confidence 99999999999998888765
No 64
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.73 E-value=8.6e-17 Score=107.14 Aligned_cols=117 Identities=20% Similarity=0.106 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 67 VQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 67 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
+.|++++..+|++......+|.++...|++++|...+++++..+|.++.++..+|.++..+|++++|...++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35666677777776667777777777777777777777777777777777777777777777777777777777777776
Q ss_pred chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHH
Q psy17412 147 RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 194 (240)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 194 (240)
++.. ++.+|.++...|++++|+..++++++.+|++..
T Consensus 84 ~~~~-----------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 DPRP-----------YFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ChHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 6665 777777777777777777777777777766544
No 65
>KOG0553|consensus
Probab=99.73 E-value=1.2e-16 Score=114.40 Aligned_cols=111 Identities=26% Similarity=0.285 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHH
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 194 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 194 (240)
+-+..-|.-+...++|.+|+..|.+||+++|+++.. |.+.+.+|.++|.++.|++.++.++.++|....
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy-----------ycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk 150 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY-----------YCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK 150 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH-----------HHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH
Confidence 456667888899999999999999999999998887 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 195 AHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+|..+|.+|..+|++.+|++.|++++.++|+++.++..|..+
T Consensus 151 ay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 151 AYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999888877654
No 66
>KOG0495|consensus
Probab=99.73 E-value=1.7e-15 Score=118.66 Aligned_cols=200 Identities=15% Similarity=0.125 Sum_probs=166.4
Q ss_pred HHHHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH
Q psy17412 36 FEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 115 (240)
Q Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 115 (240)
+..........+.|..-+.....+++.++|+++++++++.+|+....|..+|.++.++++.+.|.+.|...++..|..+.
T Consensus 641 lakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 641 LAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred HHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 33444456677788888888888888899999999999999988888888999988888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH---------------------------------------------
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL--------------------------------------------- 150 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------------------------------------------- 150 (240)
.|..++.+-...|+...|...++++.-.+|.+...
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc
Confidence 88888888888888888888888888888877655
Q ss_pred --------HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 151 --------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 151 --------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
++.....++.++..+|..+....++++|.++|.++++.+|++.++|..+-..+...|.-++-.+.+.++...
T Consensus 801 ~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 801 QRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred ccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344445678888889999999999999999999999999999999988888999999888888999999999
Q ss_pred CCCcHHHHHHHHH
Q psy17412 223 YPTRRKLVENYTQ 235 (240)
Q Consensus 223 ~p~~~~~~~~l~~ 235 (240)
.|.+...|....+
T Consensus 881 EP~hG~~W~avSK 893 (913)
T KOG0495|consen 881 EPTHGELWQAVSK 893 (913)
T ss_pred CCCCCcHHHHHhh
Confidence 9988887776554
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=6.1e-15 Score=115.78 Aligned_cols=197 Identities=13% Similarity=0.049 Sum_probs=152.0
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP-VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
..+.....+...|..+...|+++.|..++.++.+..|++. .+....+.++...|+++.|...++...+..|+++.++..
T Consensus 113 ~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~l 192 (409)
T TIGR00540 113 HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKL 192 (409)
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3455566677889999999999999999999999988875 466667999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHH---------------------------HHHhcc----CchHHHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKL---------------------------AIEQVR----DSPVLYTNRALT 168 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------------~~~~~~----~~~~~~~~la~~ 168 (240)
++.++...|++++|...+.+..+....++.. .....| +++.++..++..
T Consensus 193 l~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~ 272 (409)
T TIGR00540 193 AEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEH 272 (409)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHH
Confidence 9999999999999999999998764332221 112223 467888888888
Q ss_pred HHHhcccCchhhHHHHHhhcChh------------------------------------hH--HHHHHHHHHHHHcCCHH
Q psy17412 169 LLHLQLYDPVLPDCDKALRLDED------------------------------------NM--KAHLYKARAMHNLGQRE 210 (240)
Q Consensus 169 ~~~~~~~~~A~~~~~~~l~~~~~------------------------------------~~--~~~~~la~~~~~~g~~~ 210 (240)
+...|++++|.+.++++++..|+ ++ .....+|.++...|+++
T Consensus 273 l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~ 352 (409)
T TIGR00540 273 LIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFI 352 (409)
T ss_pred HHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHH
Confidence 88888888888888887776544 34 44556677777777777
Q ss_pred HHHHHHH--HHHHhCCCcHHHHHHHHHhhh
Q psy17412 211 EAKEYIR--ELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 211 ~A~~~~~--~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+|.++|+ .+++..|++.. ...++.++.
T Consensus 353 ~A~~~le~a~a~~~~p~~~~-~~~La~ll~ 381 (409)
T TIGR00540 353 EAADAFKNVAACKEQLDAND-LAMAADAFD 381 (409)
T ss_pred HHHHHHHHhHHhhcCCCHHH-HHHHHHHHH
Confidence 7777777 46666666554 336666554
No 68
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.72 E-value=2.3e-15 Score=105.85 Aligned_cols=165 Identities=15% Similarity=0.073 Sum_probs=154.1
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 61 QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQL 140 (240)
Q Consensus 61 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 140 (240)
+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+......+|...+..|++..|+..++++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3344777777788889999999 999999999999999999999999989999888888999999999999999999999
Q ss_pred HHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 141 VEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
..+.|++... |..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+.
T Consensus 127 ~~l~p~d~~~-----------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 127 ARLAPTDWEA-----------WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred hccCCCChhh-----------hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999988 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHhh
Q psy17412 221 EKYPTRRKLVENYTQAF 237 (240)
Q Consensus 221 ~~~p~~~~~~~~l~~~~ 237 (240)
...+.+..+..+++.+.
T Consensus 196 l~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 196 LSPAADSRVRQNLALVV 212 (257)
T ss_pred hCCCCchHHHHHHHHHH
Confidence 88888999999888765
No 69
>KOG1174|consensus
Probab=99.72 E-value=2e-15 Score=112.46 Aligned_cols=192 Identities=12% Similarity=0.061 Sum_probs=162.1
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
..+.-|+--|...+..+++..|+.+-+++|+.+|.+..++...|......|+.++|+-.|+.+..+.|...++|..+..+
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS 377 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 45666777777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHH-------------------------HHHhccCchHHHHHHHHHHHHhcccCch
Q psy17412 124 MHSLGQREEAKEYVRQLVEKYPTRRKL-------------------------AIEQVRDSPVLYTNRALTLLHLQLYDPV 178 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A 178 (240)
|...|++.+|...-+.+++..|.+... .+...|....+-..++..+...|.++.+
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchH
Confidence 888888888888887777777666544 2333444556688899999999999999
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 179 LPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+..+++.+...|+ ...+..+|.++...+.+.+|..+|..+++++|.+......+.++
T Consensus 458 i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 458 IKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 9999999998887 56789999999999999999999999999999999888887665
No 70
>KOG1840|consensus
Probab=99.72 E-value=3.7e-16 Score=122.51 Aligned_cols=180 Identities=17% Similarity=0.126 Sum_probs=151.7
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc---
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ--------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--- 109 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--- 109 (240)
..|....+...+|..|..+|+|++|+..++.++.. .|.-......+|.+|..++++++|+..|++++.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 46777888888999999999999999999999998 4444556667999999999999999999999965
Q ss_pred -----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHH
Q psy17412 110 -----DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 184 (240)
Q Consensus 110 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 184 (240)
+|....++.+||.+|...|++++|..++++++++..... ....+.-+..+.+++.++...+++++|..++.+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~---~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL---GASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh---ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 355667899999999999999999999999998754410 111122256689999999999999999999999
Q ss_pred HhhcC--------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 185 ALRLD--------EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 185 ~l~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
++++. +.-+..+.++|.+|..+|++++|.+.+++++.+.
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 98763 2346788999999999999999999999999765
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.6e-14 Score=104.44 Aligned_cols=197 Identities=11% Similarity=0.085 Sum_probs=162.6
Q ss_pred hhhHHHHHHHHHHHhhHHH-HHHhch-----hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q psy17412 19 FLMNDFMRSVEIDAMRRFE-ERKARQ-----DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLH 92 (240)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 92 (240)
.+...|.+..+.+..-+.. .....| ....+++.+|.-|+..|-++.|...|...++...-...+...+..+|..
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~ 153 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA 153 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence 3344555555555443333 222333 4567889999999999999999999999888766667888899999999
Q ss_pred ccCcCchHHHHHHHHhcCccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHH
Q psy17412 93 LQLYDPVLPDCDKALRLDEDN-----MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL 167 (240)
Q Consensus 93 ~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 167 (240)
..+|++|++..++..++.+.. +..+..++..+....+.+.|+..+.++++.+|++..+ -..+|.
T Consensus 154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA-----------si~lG~ 222 (389)
T COG2956 154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRA-----------SIILGR 222 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh-----------hhhhhH
Confidence 999999999999998887654 4577888888888999999999999999999998887 889999
Q ss_pred HHHHhcccCchhhHHHHHhhcChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 168 TLLHLQLYDPVLPDCDKALRLDEDN-MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
+....|+|++|++.++.+++.+|+. +.+.-.+..+|..+|+.++...++.++.+..+..
T Consensus 223 v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 223 VELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 9999999999999999999999986 5677888899999999999999999999887654
No 72
>KOG2076|consensus
Probab=99.71 E-value=4.7e-15 Score=119.64 Aligned_cols=169 Identities=16% Similarity=0.105 Sum_probs=156.2
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
+.....++..|+..+..|++++|.+++.+++..+|.++.+|+.+|.+|.++|+.+++....-.|-.++|.+.+.|..++.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-----hHHHHH
Q psy17412 123 AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-----NMKAHL 197 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~ 197 (240)
...++|++.+|.-+|.++++.+|.+... .+..+.+|.+.|+...|+..+.+++...|. ......
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~-----------~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWEL-----------IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHH-----------HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 9999999999999999999999999888 999999999999999999999999999992 123345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
..+..+...++.+.|++.++.++..
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 5678888899999999999999883
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.71 E-value=4.3e-15 Score=114.99 Aligned_cols=171 Identities=13% Similarity=0.042 Sum_probs=145.1
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHH----hcCcccHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL----RLDEDNMKAH 117 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~ 117 (240)
+.+..+.....|..+...|++++|...++++++.+|++..++.. +..+...|++..+.....+++ ...|....+.
T Consensus 39 ~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 117 (355)
T cd05804 39 RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLL 117 (355)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHH
Confidence 34556677788999999999999999999999999999877765 666666666555555555544 4567777788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh----H
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN----M 193 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~ 193 (240)
..+|.++..+|++++|...+++++++.|++... +..+|.++...|++++|+.++.+++...|.. .
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~-----------~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~ 186 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWA-----------VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRG 186 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH-----------HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhH
Confidence 889999999999999999999999999998777 9999999999999999999999999987643 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
..+..+|.++...|++++|+..+++++...|
T Consensus 187 ~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 187 HNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 3567899999999999999999999986666
No 74
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=1.7e-14 Score=112.83 Aligned_cols=172 Identities=15% Similarity=0.158 Sum_probs=149.3
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc--------------------
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL-------------------- 109 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------------------- 109 (240)
...+..+...|++++|+..+++..+.+|+++.++..++.+|...|++++|++.+.+..+.
T Consensus 157 l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 157 ITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999999999999999999666555422
Q ss_pred ----------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------
Q psy17412 110 ----------------------DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----------------- 150 (240)
Q Consensus 110 ----------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------- 150 (240)
.|+++.+...++..+...|+.++|...++++++..|+ +..
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~l~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-ERLVLLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHhhccCCChHHHHH
Confidence 1335567777899999999999999999999996554 332
Q ss_pred ----HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 151 ----AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 151 ----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
.....|+++..+..+|.++...+++++|.++|+++++..|++.. +..++.++..+|+.++|..+|++++.+.
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 56667899999999999999999999999999999999998654 6789999999999999999999998754
No 75
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.69 E-value=2.1e-15 Score=123.56 Aligned_cols=145 Identities=12% Similarity=0.047 Sum_probs=136.6
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
...+..+++++.+|.+..+.|.+++|...++.+++..|++..++..++.+..+.+++++|+..+++++..+|+++.+++.
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
+|.++..+|++++|+..|++++..+|+++.. +..+|.++...|+.++|...|.++++...+-...
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~-----------~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENG-----------YVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 9999999999999999999999988888777 9999999999999999999999999886554443
No 76
>KOG1840|consensus
Probab=99.68 E-value=4.3e-14 Score=111.06 Aligned_cols=194 Identities=18% Similarity=0.165 Sum_probs=154.2
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC---
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ--------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD--- 110 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--- 110 (240)
.+.-......+|..|...+++.+|+.+|++++.+ +|..+.++.++|..|...|++++|..++++++++.
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 3444555556999999999999999999999987 34446789999999999999999999999998764
Q ss_pred -----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 111 -----EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 111 -----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
|.-...+..++.++..++++++|..++++++++.-+-+.. ..+..+.++.++|.+|...|+|++|.+.++++
T Consensus 317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~---~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE---DNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc---cchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3345578889999999999999999999999864321110 11123677999999999999999999999999
Q ss_pred hhcC--------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCc---HHHHHHHHHhhh
Q psy17412 186 LRLD--------EDNMKAHLYKARAMHNLGQREEAKEYIRELVEK----YPTR---RKLVENYTQAFE 238 (240)
Q Consensus 186 l~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~ 238 (240)
+.+. +.....+..+|..+.+++++.+|...|.++..+ .|++ ...+.+|+.+|.
T Consensus 394 i~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~ 461 (508)
T KOG1840|consen 394 IQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYR 461 (508)
T ss_pred HHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence 9764 234567889999999999999999999888754 3444 445666666554
No 77
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.68 E-value=1.6e-15 Score=99.91 Aligned_cols=105 Identities=8% Similarity=-0.046 Sum_probs=101.0
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
++..+.++..|..++..|++++|...|+-+...+|.+...|+++|.|+..+|++.+|+..|.+++.++|+++..+++.|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 66888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCc
Q psy17412 123 AMHSLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
|++..|+.+.|.+.|+.++......
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999987443
No 78
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.67 E-value=4.4e-15 Score=97.87 Aligned_cols=106 Identities=10% Similarity=-0.004 Sum_probs=76.0
Q ss_pred HhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 107 LRLD-EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 107 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
..+. ++..+..+.+|..++..|++++|...|+-+..++|.+... |+++|.++..+|+|.+|+..|.++
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y-----------~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDY-----------WFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH-----------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444 5566667777777777777777777777777777776666 777777777777777777777777
Q ss_pred hhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 186 LRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 186 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
+.++|+++.++++.|.+++..|+.+.|.+.|+.++...
T Consensus 96 ~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 96 AQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777654
No 79
>KOG4162|consensus
Probab=99.67 E-value=7.7e-14 Score=111.13 Aligned_cols=136 Identities=23% Similarity=0.134 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHH
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (240)
.|...+..+...++.++|..++.++-.++|..+..|+..|.++...|++.+|...|..++.++|+++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s----------- 720 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS----------- 720 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH-----------
Confidence 344566677777777777777778877788888888888888888888888888888888888888877
Q ss_pred HHHHHHHHHHhcccCchhh--HHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 162 YTNRALTLLHLQLYDPVLP--DCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 162 ~~~la~~~~~~~~~~~A~~--~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
...+|.++.+.|+-.-|.. .+..+++++|.++++|+.+|.++..+|+.++|.++|..++++.+.+|-
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 8888888888888777777 888888888888888888888888888888888888888888877763
No 80
>KOG0495|consensus
Probab=99.67 E-value=2.7e-14 Score=112.04 Aligned_cols=183 Identities=14% Similarity=0.090 Sum_probs=117.4
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|.....|...+..+...|+...|..++.++++.+|++..+|.....+.....+++.|...|.++....| ...+|+
T Consensus 577 v~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~m 655 (913)
T KOG0495|consen 577 VEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWM 655 (913)
T ss_pred HHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhH
Confidence 3445666666777777778888888888888888888888777776666666666666666666666655443 235556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 198 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 198 (240)
.-+.+...+++.++|+..++++++..|..... |..+|+++.+.++.+.|...|...++..|+.+..|..
T Consensus 656 Ks~~~er~ld~~eeA~rllEe~lk~fp~f~Kl-----------~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 656 KSANLERYLDNVEEALRLLEEALKSFPDFHKL-----------WLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHhCCchHHH-----------HHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 56666666666666666666666666665555 6666666666666666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 199 KARAMHNLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 199 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
++.+-.+.|+.-.|...+.++.-.+|.+...|...
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~ 759 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLES 759 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHH
Confidence 66666555566666666666655566555555443
No 81
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=9.7e-14 Score=109.05 Aligned_cols=175 Identities=14% Similarity=0.103 Sum_probs=145.1
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc-----------------
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL----------------- 109 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------- 109 (240)
......+..+...|++++|...++...+..|+++.++..++.++...|++++|.+.+.+..+.
T Consensus 154 ~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~ 233 (409)
T TIGR00540 154 LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEI 233 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344556888888888888888888888888888888888888888888888777766655532
Q ss_pred ---------------------Cc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchH----H----------
Q psy17412 110 ---------------------DE----DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRK----L---------- 150 (240)
Q Consensus 110 ---------------------~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~---------- 150 (240)
.| +++..+..+|..+...|++++|...++++++..|++.. .
T Consensus 234 ~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 234 GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPE 313 (409)
T ss_pred HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCC
Confidence 23 35567778888999999999999999999999998873 2
Q ss_pred -----------HHHhccCch--HHHHHHHHHHHHhcccCchhhHHH--HHhhcChhhHHHHHHHHHHHHHcCCHHHHHHH
Q psy17412 151 -----------AIEQVRDSP--VLYTNRALTLLHLQLYDPVLPDCD--KALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215 (240)
Q Consensus 151 -----------~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~--~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 215 (240)
+....|+++ .+...+|.++++.|++++|.++|+ .+++..|+... +..+|.++..+|+.++|.++
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 456678888 889999999999999999999999 68888898766 55999999999999999999
Q ss_pred HHHHHHh
Q psy17412 216 IRELVEK 222 (240)
Q Consensus 216 ~~~~~~~ 222 (240)
|++++..
T Consensus 393 ~~~~l~~ 399 (409)
T TIGR00540 393 RQDSLGL 399 (409)
T ss_pred HHHHHHH
Confidence 9998754
No 82
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.66 E-value=1.2e-14 Score=120.46 Aligned_cols=184 Identities=11% Similarity=0.008 Sum_probs=154.3
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc-------
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN------- 113 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------- 113 (240)
-.|....++..+...+...+++++|+...+.+++.+|+...+++.+|.++.+.+++.++.-. .++...+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 46788999999999999999999999999999999999999999999999999888776655 555444443
Q ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhH
Q psy17412 114 ------------MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 181 (240)
Q Consensus 114 ------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 181 (240)
..+++.+|.||-++|+.++|...|+++++.+|+++.+ ..++|..|... +.++|+++
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~a-----------LNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEI-----------VKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHH-----------HHHHHHHHHHh-hHHHHHHH
Confidence 3799999999999999999999999999999999888 88888888777 78888887
Q ss_pred HHHHhhc--------------------ChhhHHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 182 CDKALRL--------------------DEDNMKA--------------------HLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 182 ~~~~l~~--------------------~~~~~~~--------------------~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
+.+++.. +|.+.+. +.-+-..|...+++++++.+++.+++
T Consensus 172 ~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 172 LKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 7777654 2333222 22233677888999999999999999
Q ss_pred hCCCcHHHHHHHHHhhh
Q psy17412 222 KYPTRRKLVENYTQAFE 238 (240)
Q Consensus 222 ~~p~~~~~~~~l~~~~~ 238 (240)
.+|.+..++..++.++.
T Consensus 252 ~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 252 HDNKNNKAREELIRFYK 268 (906)
T ss_pred cCCcchhhHHHHHHHHH
Confidence 99999999999998875
No 83
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.66 E-value=4.3e-14 Score=102.54 Aligned_cols=176 Identities=14% Similarity=0.108 Sum_probs=146.1
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHH---HHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVL---YTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAH 117 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~ 117 (240)
..+..++..|...+..|+|++|++.|++++...|..+.+ .+.+|.+|++.+++++|+..+++.++..|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 467778999999999999999999999999999988654 4899999999999999999999999999876 4578
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHHcCCCchHHH-----HHh-ccCchHHHHHHHHHHHHhc
Q psy17412 118 LYKARAMHSLG---------------Q---REEAKEYVRQLVEKYPTRRKLA-----IEQ-VRDSPVLYTNRALTLLHLQ 173 (240)
Q Consensus 118 ~~la~~~~~~~---------------~---~~~A~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~~~~la~~~~~~~ 173 (240)
+.+|.++...+ + ..+|+..+++.++..|++.... +.. ....+.--+.+|..|.+.|
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99998865543 1 2468899999999999876541 111 1122344567888999999
Q ss_pred ccCchhhHHHHHhhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 174 LYDPVLPDCDKALRLDEDN---MKAHLYKARAMHNLGQREEAKEYIREL 219 (240)
Q Consensus 174 ~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~ 219 (240)
.|..|+.-++.+++..|+. .+++..++..|..+|..++|..+....
T Consensus 190 ~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 190 AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999999999998864 778999999999999999998876643
No 84
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.66 E-value=2.1e-14 Score=101.83 Aligned_cols=170 Identities=18% Similarity=0.187 Sum_probs=133.6
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAH 117 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~ 117 (240)
..+..++..|..++..|+|.+|+..|++++...|.+ ..+.+.+|.+++..|+++.|+..+++.++..|++ +.++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 357789999999999999999999999999998876 5688999999999999999999999999999876 4588
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCchHHH-----H-HhccCchHHHHHHHHHHHHhcccCchhh
Q psy17412 118 LYKARAMHSLG-----------QREEAKEYVRQLVEKYPTRRKLA-----I-EQVRDSPVLYTNRALTLLHLQLYDPVLP 180 (240)
Q Consensus 118 ~~la~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (240)
+.+|.+++.+. ...+|+..|+..++..|++.... + ........--+.+|..|.+.|.|..|+.
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 99999876653 34589999999999999986551 1 1111233446678889999999999999
Q ss_pred HHHHHhhcChhh---HHHHHHHHHHHHHcCCHHHHH
Q psy17412 181 DCDKALRLDEDN---MKAHLYKARAMHNLGQREEAK 213 (240)
Q Consensus 181 ~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~ 213 (240)
.++.+++..|+. ..++..++..+..+|..+.|.
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999998875 567889999999999988554
No 85
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.65 E-value=2.6e-13 Score=103.31 Aligned_cols=153 Identities=19% Similarity=0.164 Sum_probs=130.1
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
+.....++..+..++..|++++|...++..+...|+++..+...+.+++..++.++|.+.+++++.++|+.+..++++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 56778888888899999999999999999999999999888889999999999999999999999999988888899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHH
Q psy17412 123 AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 202 (240)
++.+.|++.+|+..++..+..+|+++.. |..+|..|..+|+..++ ....+..
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~-----------w~~LAqay~~~g~~~~a-----------------~~A~AE~ 434 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNG-----------WDLLAQAYAELGNRAEA-----------------LLARAEG 434 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchH-----------HHHHHHHHHHhCchHHH-----------------HHHHHHH
Confidence 9999999999999999998888888877 88899888888876443 4455666
Q ss_pred HHHcCCHHHHHHHHHHHHHhC
Q psy17412 203 MHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~ 223 (240)
+...|++++|+..+..+.+..
T Consensus 435 ~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 435 YALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHhCCCHHHHHHHHHHHHHhc
Confidence 777788888888888777665
No 86
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.65 E-value=7.3e-15 Score=112.74 Aligned_cols=113 Identities=22% Similarity=0.273 Sum_probs=106.6
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG 128 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 128 (240)
+...|..++..|+|++|+..|++++..+|+++.++..+|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh
Q psy17412 129 QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172 (240)
Q Consensus 129 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 172 (240)
++++|+..|+++++++|++... ...++.|..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~-----------~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRF-----------TKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHH
Confidence 9999999999999999999887 77777775555
No 87
>KOG0548|consensus
Probab=99.64 E-value=2e-14 Score=110.16 Aligned_cols=142 Identities=25% Similarity=0.346 Sum_probs=124.2
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
....+|..+......|+.+++.|+|..|+..|.+++..+|+++..|.++|.||.++|.+..|+...+++++++|+....|
T Consensus 350 ~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 350 KAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred HHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence 44456777888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
...|.++..+.+|++|+..|+++++.+|++... ...+..|...........+..++++ .+|+
T Consensus 430 ~RKg~al~~mk~ydkAleay~eale~dp~~~e~-----------~~~~~rc~~a~~~~~~~ee~~~r~~-~dpe 491 (539)
T KOG0548|consen 430 LRKGAALRAMKEYDKALEAYQEALELDPSNAEA-----------IDGYRRCVEAQRGDETPEETKRRAM-ADPE 491 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH-----------HHHHHHHHHHhhcCCCHHHHHHhhc-cCHH
Confidence 999999999999999999999999999998877 7777777776544455555555533 3554
No 88
>KOG3060|consensus
Probab=99.64 E-value=3.6e-14 Score=99.30 Aligned_cols=153 Identities=16% Similarity=0.075 Sum_probs=138.1
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
.-|...+.....|..+-..|++++|+++|+..++.+|.+..++-....+...+|+..+|++.+...++..+.+.++|..+
T Consensus 81 ~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eL 160 (289)
T KOG3060|consen 81 RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHEL 160 (289)
T ss_pred hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34777888888999999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc---ccCchhhHHHHHhhcChhhHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ---LYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
+.+|...|+|++|..++++.+-+.|.++.. +..+|.+++-.| ++.-|.++|.++++++|.+...++
T Consensus 161 aeiY~~~~~f~kA~fClEE~ll~~P~n~l~-----------f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 161 AEIYLSEGDFEKAAFCLEELLLIQPFNPLY-----------FQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHcCCCcHHH-----------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 999999999999999999999999999887 788888777665 567799999999999998888887
Q ss_pred HHHHHHH
Q psy17412 198 YKARAMH 204 (240)
Q Consensus 198 ~la~~~~ 204 (240)
.+..+..
T Consensus 230 GI~lc~~ 236 (289)
T KOG3060|consen 230 GIYLCGS 236 (289)
T ss_pred HHHHHHH
Confidence 7665543
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.64 E-value=2.8e-14 Score=110.43 Aligned_cols=177 Identities=17% Similarity=0.102 Sum_probs=146.1
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
+|+.+..+..+|..+...|+.+.+...+.++....|.+ .......+.++...|++++|...+++++...|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 56778899999999999999999999999988887754 456777899999999999999999999999999987776
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEK-YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
. +..+...|++..+.....+++.. .|.+ +........+|.++...|++++|...++++++..|+++.++.
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~ 152 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPEN--------PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVH 152 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHH
Confidence 5 66666666555555555555432 1221 222344788899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
.+|.++...|++++|+.++++++...|.++
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence 999999999999999999999999887543
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.63 E-value=1.1e-13 Score=109.89 Aligned_cols=189 Identities=22% Similarity=0.162 Sum_probs=138.4
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 125 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 125 (240)
.+.+.....++...|++++|++++........+...+.-.+|.++.++|++++|...|...+..+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 44555666677777777777777777766666767777777777777777777777777777777777777766666653
Q ss_pred HcC-----CHHHHHHHHHHHHHcCCCchHH--------------------------------------------------
Q psy17412 126 SLG-----QREEAKEYVRQLVEKYPTRRKL-------------------------------------------------- 150 (240)
Q Consensus 126 ~~~-----~~~~A~~~~~~a~~~~~~~~~~-------------------------------------------------- 150 (240)
... +.+.-...|++.....|.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 222 3455556666665555543221
Q ss_pred -----HHH---------------hccCc--hHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCC
Q psy17412 151 -----AIE---------------QVRDS--PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ 208 (240)
Q Consensus 151 -----~~~---------------~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 208 (240)
... ..+.. ..+++.+|..|-..|++++|+++++++++..|+.++.+...|+++-..|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 000 00111 24668889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 209 REEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 209 ~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
+.+|..+++.+..+++.+.-+-...+
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~a 269 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCA 269 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHH
Confidence 99999999999999998765544433
No 91
>KOG0550|consensus
Probab=99.63 E-value=6.7e-15 Score=109.53 Aligned_cols=194 Identities=21% Similarity=0.228 Sum_probs=148.7
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccH---------
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM--------- 114 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--------- 114 (240)
..++.....|..+++..+|..|+..|..|++..|+++..|.+.+.+++..+++++|....++.+++.|..+
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQC 126 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhh
Confidence 35566777888888888888888888888888888888888888888888888877777766665544332
Q ss_pred -----------------------------------------------------------------------------HHH
Q psy17412 115 -----------------------------------------------------------------------------KAH 117 (240)
Q Consensus 115 -----------------------------------------------------------------------------~~~ 117 (240)
.+.
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al 206 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEAL 206 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHH
Confidence 333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHH-HHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh----
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLA-IEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---- 192 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---- 192 (240)
+..|.+++..++.+.|+.+|+++++++|++.... ....+..-..+-..|.-.++.|+|..|.+.|..++.++|++
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 4445555556666666677777777777655441 11122334567788999999999999999999999999975
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
+..|.+++.+...+|+..+|+..++.++.++|....++..-++|.
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 667899999999999999999999999999998877776666653
No 92
>KOG4162|consensus
Probab=99.63 E-value=8.7e-14 Score=110.85 Aligned_cols=201 Identities=18% Similarity=0.067 Sum_probs=162.1
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQV-RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
...++.++.+.+.++..|..+++.+.|.++.+++++.+ .+++.+|..++.+....+++.+|+...+.++.-.|+|-...
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~ 550 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM 550 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 44578888999999999999999999999999999994 45688999999999999999999999999998888765544
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------------------------------
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----------------------------------------------- 150 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------------------------------------- 150 (240)
.....+-...++.++|+......+.+....+.+
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 444444445555555555544444332210000
Q ss_pred ---------------------------------------------HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 151 ---------------------------------------------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 151 ---------------------------------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
+....+..+..|+..|.++...|+.++|.+.|..+
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 11222345566899999999999999999999999
Q ss_pred hhcChhhHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 186 LRLDEDNMKAHLYKARAMHNLGQREEAKE--YIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 186 l~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
+.++|+++.....+|.++...|+..-|.. .+..+++.+|.++++|+.++.++.+
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK 766 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999988888 9999999999999999999998865
No 93
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.62 E-value=1.6e-14 Score=110.87 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=86.0
Q ss_pred HHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHH
Q psy17412 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY 162 (240)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 162 (240)
+...|...+..|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..+++++.++|.+... +
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a-----------~ 73 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKA-----------Y 73 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH-----------H
Confidence 34567777777778888888888887777777777778888877888888888888887777777666 7
Q ss_pred HHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHc
Q psy17412 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNL 206 (240)
Q Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 206 (240)
+.+|.++..+|++++|+..|+++++++|++..+...++.+...+
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 77777777778888888888888777777777777776665444
No 94
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.61 E-value=2.4e-13 Score=103.48 Aligned_cols=149 Identities=19% Similarity=0.078 Sum_probs=139.7
Q ss_pred CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhcc
Q psy17412 77 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156 (240)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 156 (240)
|....+++..+..++..|++++|+..++..+...|+++..+-..+.++...++..+|.+.+++++.+.|..+..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l------ 376 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL------ 376 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH------
Confidence 67788999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred CchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
..++|.++++.|++.+|+..++..+..+|+++..|..++..|..+|+..+|...+.+.......-.++...+.+.
T Consensus 377 -----~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 377 -----QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred -----HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998887766666655544
No 95
>KOG1156|consensus
Probab=99.60 E-value=3.3e-13 Score=105.78 Aligned_cols=188 Identities=20% Similarity=0.179 Sum_probs=161.5
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|.+++.+-..|..+...|+-++|..+...++..++.+..+|..+|.++....+|++|+.+|+.|+.+.|+|...+.
T Consensus 34 L~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilr 113 (700)
T KOG1156|consen 34 LKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILR 113 (700)
T ss_pred HHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC---hh----
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD---ED---- 191 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---~~---- 191 (240)
.++.+..++++++-....-.+.++..|..... |...+..+.-.|++..|...++...+.. |.
T Consensus 114 DlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~-----------w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~ 182 (700)
T KOG1156|consen 114 DLSLLQIQMRDYEGYLETRNQLLQLRPSQRAS-----------WIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDY 182 (700)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHH
Confidence 99999999999999999999999999988777 7777777777777777776665544322 11
Q ss_pred -----------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 192 -----------------------------------NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 192 -----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
........+.+++++|+.++|...|...+..+|++-..+..+-.+
T Consensus 183 e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 183 EHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHH
Confidence 122334678889999999999999999999999998888777666
Q ss_pred h
Q psy17412 237 F 237 (240)
Q Consensus 237 ~ 237 (240)
+
T Consensus 263 l 263 (700)
T KOG1156|consen 263 L 263 (700)
T ss_pred H
Confidence 5
No 96
>KOG1127|consensus
Probab=99.59 E-value=1.2e-13 Score=112.80 Aligned_cols=189 Identities=14% Similarity=0.066 Sum_probs=148.6
Q ss_pred HHHHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc--
Q psy17412 36 FEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN-- 113 (240)
Q Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-- 113 (240)
.+....++.-+.++..+|..|....+...|..+|++|.++++.+..++-..+..|....+++.|....-.+-+..|..
T Consensus 482 i~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~ 561 (1238)
T KOG1127|consen 482 IRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFAC 561 (1238)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHH
Confidence 345556667777777777777777777777777777777777777777777777777777777777755555555432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 193 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 193 (240)
...|..+|..+...+++..|+..++.+++.+|.+... |..+|.+|...|+|..|++.|.++..++|.+.
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~-----------W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNL-----------WLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHH-----------HHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 2345668888888888888888888888888888777 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
...+..+.+...+|+|.+|+..+...+............++.
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE 672 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAE 672 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 999999999999999999999999888776555444444443
No 97
>KOG1174|consensus
Probab=99.58 E-value=6.6e-13 Score=99.28 Aligned_cols=190 Identities=15% Similarity=0.153 Sum_probs=135.8
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHH--------------------------------
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTN-------------------------------- 85 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-------------------------------- 85 (240)
....-+.+...+..+|.+++..|++++|+..|+++...+|......-.
T Consensus 224 ~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~w 303 (564)
T KOG1174|consen 224 DNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHW 303 (564)
T ss_pred hhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhh
Confidence 344567788899999999999999999999999999998875443333
Q ss_pred --HHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHH
Q psy17412 86 --RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163 (240)
Q Consensus 86 --la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 163 (240)
-+...+..+++..|+.+-.++|+.+|.+..++...|.++..+|+.++|+-.|+.+..+.|-.-+. |.
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~-----------Y~ 372 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI-----------YR 372 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH-----------HH
Confidence 33344445566677777777777777777777777777777777777777777777777766555 77
Q ss_pred HHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA-RAMH-NLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 164 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.+..+|...|++.+|......+++.-|.+...+..+| .++. .----++|.+++++++++.|....+...++.+..
T Consensus 373 GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 373 GLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ 449 (564)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence 7777777777777777777777777777777776665 3333 2333466777777777777777776666666543
No 98
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.57 E-value=1.3e-13 Score=89.67 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh-
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN- 192 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~- 192 (240)
++.++.+|..+...|++++|+..+++++..+|+++.. +..++.+|.++...|++++|+..+++++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYA--------PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc--------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 3567888888888888888888888888888765322 3347888888888888888888888888887764
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 193 --MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 193 --~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
+.++..+|.++..+|++++|..++++++...|+++.+.....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 567888888888888999999999888888888876655443
No 99
>KOG1156|consensus
Probab=99.56 E-value=5.3e-13 Score=104.64 Aligned_cols=168 Identities=17% Similarity=0.148 Sum_probs=158.9
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
.-..++..+.-.+..++|.+.++..+..++..|++++.....|.....+|+-++|......++..++.+.-+|.-+|.++
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 34567778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHH
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 204 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 204 (240)
...++|++|+++|+.|+.+.|++... +..++....++++++-....-.+.++..|..-..|...+..+.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qi-----------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~ 154 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQI-----------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQH 154 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHH-----------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999888 9999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhC
Q psy17412 205 NLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~ 223 (240)
..|++..|....+...+..
T Consensus 155 L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 155 LLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999988877654
No 100
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.56 E-value=3e-12 Score=107.14 Aligned_cols=176 Identities=11% Similarity=0.016 Sum_probs=156.4
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc-------
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVR------DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE------- 111 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------- 111 (240)
-.-+....|..|+..++.++|+.+|++++...| .+......+...|...+++++|..++++.....|
T Consensus 326 P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~ 405 (822)
T PRK14574 326 PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG 405 (822)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC
Confidence 445667789999999999999999999988653 2233346788899999999999999999987433
Q ss_pred --------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHH
Q psy17412 112 --------DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD 183 (240)
Q Consensus 112 --------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (240)
+..++...++.++...|++.+|...+++.+...|.+... +..+|.++...|.+.+|...++
T Consensus 406 ~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l-----------~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 406 LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNL-----------RIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHhcCCHHHHHHHHH
Confidence 445678889999999999999999999999999999888 9999999999999999999999
Q ss_pred HHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 184 KALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 184 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
.+..++|++..+...+|.++..+|++.+|......++...|+++....
T Consensus 475 ~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 475 AVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 999999999999999999999999999999999999999999986543
No 101
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.54 E-value=9.7e-13 Score=93.37 Aligned_cols=149 Identities=18% Similarity=0.195 Sum_probs=120.2
Q ss_pred ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhc
Q psy17412 79 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQV 155 (240)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 155 (240)
++..++..|...+..|++.+|+..|++++...|.+ +.+.+.+|.+++..|++++|+..+++.++..|+++..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----- 78 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----- 78 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-----
Confidence 46788899999999999999999999999988764 6789999999999999999999999999999998876
Q ss_pred cCchHHHHHHHHHHHHhc-----------ccCchhhHHHHHhhcChhhHH-----------------HHHHHHHHHHHcC
Q psy17412 156 RDSPVLYTNRALTLLHLQ-----------LYDPVLPDCDKALRLDEDNMK-----------------AHLYKARAMHNLG 207 (240)
Q Consensus 156 ~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~~l~~~~~~~~-----------------~~~~la~~~~~~g 207 (240)
+.+++.+|.+++... ...+|+..|+..++..|++.. --+.+|..|.+.|
T Consensus 79 ---~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 79 ---DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG 155 (203)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ---hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 677888888876653 345789999999999997521 2256889999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 208 QREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 208 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
.+..|+..++.+++..|+.+..-..+..
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~ 183 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALAR 183 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 9999999999999999998765544443
No 102
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.53 E-value=3.7e-13 Score=87.49 Aligned_cols=105 Identities=15% Similarity=0.230 Sum_probs=96.7
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLY 119 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~ 119 (240)
++.++..|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..+++++...|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578999999999999999999999999999876 5688999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
+|.++..+|++++|...++++++..|++...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999999999999987654
No 103
>KOG1128|consensus
Probab=99.53 E-value=9.9e-14 Score=110.00 Aligned_cols=120 Identities=12% Similarity=0.125 Sum_probs=73.8
Q ss_pred HccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH
Q psy17412 92 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171 (240)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 171 (240)
..++|.++..+++..++++|-....|+.+|.+..+.++++.|..+|..++.+.|++... |.+++..|.+
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea-----------WnNls~ayi~ 565 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA-----------WNNLSTAYIR 565 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh-----------hhhhhHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666555 6666666666
Q ss_pred hcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 172 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
.++-.+|...++++++.+-.+..+|-+...+..+.|.+++|++.|.+.+.+
T Consensus 566 ~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 666666666666666666555566666666666666666666666655543
No 104
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.53 E-value=1.4e-12 Score=90.30 Aligned_cols=107 Identities=23% Similarity=0.275 Sum_probs=95.4
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
..+..+..++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|.+...+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 455678899999999999999999999999999887664 46899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCc
Q psy17412 118 LYKARAMHSLGQ--------------REEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 118 ~~la~~~~~~~~--------------~~~A~~~~~~a~~~~~~~ 147 (240)
..+|.++...|+ +.+|+..+++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999887 567777777777777775
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.53 E-value=2.6e-13 Score=100.84 Aligned_cols=171 Identities=22% Similarity=0.244 Sum_probs=141.8
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
+.-.....|.++...|++++|++.+.+. ++.++......+++..++++.|.+.++.+.+.+.+..-.....+++.
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3445566778888899999999998764 56778888899999999999999999999998888777777777777
Q ss_pred HHcC--CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHH
Q psy17412 125 HSLG--QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202 (240)
Q Consensus 125 ~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 202 (240)
+..| ++.+|...|++.....+.++.. +..++.+++.+|+|++|.+.+.++++.+|++++++.+++.+
T Consensus 176 l~~g~e~~~~A~y~f~El~~~~~~t~~~-----------lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSDKFGSTPKL-----------LNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC 244 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHCCS--SHHH-----------HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHhccCCCHHH-----------HHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 7766 5999999999988877776666 99999999999999999999999999999999999999999
Q ss_pred HHHcCCH-HHHHHHHHHHHHhCCCcHHHHH
Q psy17412 203 MHNLGQR-EEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 203 ~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
...+|+. +.+.+++.+....+|+++-+..
T Consensus 245 ~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 245 SLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 9999999 6677788888889999876543
No 106
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=9e-13 Score=95.24 Aligned_cols=125 Identities=18% Similarity=0.134 Sum_probs=109.7
Q ss_pred hHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc---cc
Q psy17412 99 VLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ---LY 175 (240)
Q Consensus 99 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~ 175 (240)
-+.-++.-+..+|++++-|..||.+|+.+|++..|...|.+++++.|++++. +..+|.+++... ..
T Consensus 141 l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~-----------~~g~aeaL~~~a~~~~t 209 (287)
T COG4235 141 LIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI-----------LLGLAEALYYQAGQQMT 209 (287)
T ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHhcCCccc
Confidence 3445666678899999999999999999999999999999999999999888 999999887653 34
Q ss_pred CchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 176 DPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 176 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
.++...+++++..+|+++.+.+.+|..++..|++.+|...++..+...|.+..-...+.
T Consensus 210 a~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 210 AKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 57889999999999999999999999999999999999999999999887755444333
No 107
>KOG0543|consensus
Probab=99.49 E-value=1.1e-12 Score=98.00 Aligned_cols=136 Identities=21% Similarity=0.323 Sum_probs=116.3
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---------------hHHHHHHHHHHHHccCcCchHHHHHHHHh
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---------------PVLYTNRALTLLHLQLYDPVLPDCDKALR 108 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 108 (240)
..+......|+.+++.|+|..|...|++++..-+.. ..++.+++.|+.++++|..|+..+.+++.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 355667778999999999999999999998864321 34889999999999999999999999999
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCch-hhHHHHHhh
Q psy17412 109 LDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPV-LPDCDKALR 187 (240)
Q Consensus 109 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~l~ 187 (240)
.+|+|+.+++..|.++..+|+++.|+..|++++++.|++..+ ...+..+..+..++.+. .+.|.+++.
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~-----------~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA-----------RAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999877 77777777766655444 667777765
Q ss_pred cCh
Q psy17412 188 LDE 190 (240)
Q Consensus 188 ~~~ 190 (240)
.-+
T Consensus 355 k~~ 357 (397)
T KOG0543|consen 355 KLA 357 (397)
T ss_pred ccc
Confidence 543
No 108
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.49 E-value=5.9e-12 Score=91.47 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=123.7
Q ss_pred CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHh
Q psy17412 78 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK---AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQ 154 (240)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 154 (240)
.++..++..|...+..|++++|++.|++++...|..+. +.+.+|.++++.+++++|+..+++.++.+|+++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---- 105 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---- 105 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----
Confidence 35677888999999999999999999999999998765 45899999999999999999999999999999877
Q ss_pred ccCchHHHHHHHHHHHHhc------------------ccCchhhHHHHHhhcChhhHH-----------------HHHHH
Q psy17412 155 VRDSPVLYTNRALTLLHLQ------------------LYDPVLPDCDKALRLDEDNMK-----------------AHLYK 199 (240)
Q Consensus 155 ~~~~~~~~~~la~~~~~~~------------------~~~~A~~~~~~~l~~~~~~~~-----------------~~~~l 199 (240)
+.+++.+|.++...+ ...+|+..|++.++..|+... --+..
T Consensus 106 ----~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~i 181 (243)
T PRK10866 106 ----DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSV 181 (243)
T ss_pred ----HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899998865443 124688999999999997521 12567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 200 ARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
|..|.+.|.+..|+.-++.+++..|+.+..-..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~ea 214 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDA 214 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHH
Confidence 888999999999999999999999987554433
No 109
>KOG2376|consensus
Probab=99.48 E-value=3e-11 Score=94.16 Aligned_cols=186 Identities=20% Similarity=0.202 Sum_probs=146.5
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|+...++...-.+....+.|++|+...+.-...... ....+..+.|+++++..++|+..++ ..++.+.....
T Consensus 39 l~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~ 114 (652)
T KOG2376|consen 39 LSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLE 114 (652)
T ss_pred HhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHH
Confidence 3456888899999999999999999999555443322211 2233789999999999999999998 44566667888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH----------------HHHhcc----CchHHHHHHHHHHHHhcccCch
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----------------AIEQVR----DSPVLYTNRALTLLHLQLYDPV 178 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------~~~~~~----~~~~~~~~la~~~~~~~~~~~A 178 (240)
..|++++++|+|++|...|+..++-+.++.+. .....| ++.+.++|.+.++...|+|.+|
T Consensus 115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA 194 (652)
T KOG2376|consen 115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQA 194 (652)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence 89999999999999999999998877665443 112222 2567899999999999999999
Q ss_pred hhHHHHHhhcCh--------h-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 179 LPDCDKALRLDE--------D-------NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 179 ~~~~~~~l~~~~--------~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
++.++++++... + -..+...++.++..+|+..+|...|...++.+|.+..
T Consensus 195 ~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 195 IELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence 999999954321 1 1346788999999999999999999999999987754
No 110
>KOG1128|consensus
Probab=99.48 E-value=7.1e-13 Score=105.25 Aligned_cols=175 Identities=17% Similarity=0.110 Sum_probs=151.2
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
....|-....+|...|+-.+|..+..+-++ .|.++..|..+|++....--|++|.+..+. .+..+...+|...
T Consensus 423 rlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~------~sarA~r~~~~~~ 495 (777)
T KOG1128|consen 423 RLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNY------ISARAQRSLALLI 495 (777)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhh------hhHHHHHhhcccc
Confidence 567788888999999999999999999988 666777887777776665555555555443 3455778888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHH
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 204 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 204 (240)
...++|+++..+++..++++|-.... |+.+|.+..+.+++..|.+.|.+++.++|++...|.+++..|+
T Consensus 496 ~~~~~fs~~~~hle~sl~~nplq~~~-----------wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINPLQLGT-----------WFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCccchhH-----------HHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 88999999999999999999998888 9999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 205 NLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
.+|+..+|...++++++-+-+++.+|.++..+.
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvs 597 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVS 597 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhh
Confidence 999999999999999999988888888876543
No 111
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.48 E-value=1.1e-12 Score=81.50 Aligned_cols=99 Identities=36% Similarity=0.436 Sum_probs=94.1
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHc
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSL 127 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 127 (240)
.++.+|..+...|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q psy17412 128 GQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 128 ~~~~~A~~~~~~a~~~~~~ 146 (240)
|++++|...+.++++..|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988773
No 112
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.47 E-value=2.3e-13 Score=79.41 Aligned_cols=67 Identities=24% Similarity=0.268 Sum_probs=64.2
Q ss_pred chHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q psy17412 158 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG-QREEAKEYIRELVEKYP 224 (240)
Q Consensus 158 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p 224 (240)
++..+..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35669999999999999999999999999999999999999999999999 79999999999999988
No 113
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.47 E-value=5.1e-12 Score=87.24 Aligned_cols=105 Identities=17% Similarity=0.037 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 193 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 193 (240)
..+++.+|.++..+|++++|+..+++++.+.|+.... +.++.++|.++...|++++|+..+++++..+|...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~--------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR--------SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP 106 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 3445556666666666666666666666555442211 22356666666666666666666666666666555
Q ss_pred HHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCc
Q psy17412 194 KAHLYKARAMH-------NLGQRE-------EAKEYIRELVEKYPTR 226 (240)
Q Consensus 194 ~~~~~la~~~~-------~~g~~~-------~A~~~~~~~~~~~p~~ 226 (240)
..+..+|.++. .+|+++ +|+.++++++..+|.+
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 55555555555 555554 6666777777788754
No 114
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.47 E-value=1.1e-11 Score=85.22 Aligned_cols=182 Identities=17% Similarity=0.135 Sum_probs=141.5
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
.+...+..++..|..|-+.|-+.-|..-|.+++.+.|+.+.++..+|..+...|+++.|.+.|+..++++|.+.-+..+.
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhc----cCch-HHHHHHHH--------------HHHHhcccCchhhH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQV----RDSP-VLYTNRAL--------------TLLHLQLYDPVLPD 181 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~----~~~~-~~~~~la~--------------~~~~~~~~~~A~~~ 181 (240)
|..++.-|++.-|.+.+.+-...+|++|--.+..+ .-+| .+..++.. +-+-+|+..+ ...
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l 218 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETL 218 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHH
Confidence 99999999999999999999999999886521111 0011 11111111 1122233211 122
Q ss_pred HHHHhhcChh-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 182 CDKALRLDED-------NMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 182 ~~~~l~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
++++.....+ -.++++.+|..+...|+.++|...|+-++..+
T Consensus 219 ~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 219 MERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3333322222 25678999999999999999999999888654
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.47 E-value=4.2e-12 Score=105.66 Aligned_cols=179 Identities=13% Similarity=0.123 Sum_probs=141.0
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh-------------------HHHHHHHHHHHHccCcCc
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP-------------------VLYTNRALTLLHLQLYDP 98 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------------~~~~~la~~~~~~~~~~~ 98 (240)
.....|.....++.+|..+++.++++++... .++...+.+. .+++.+|.||-++|++++
T Consensus 57 ~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~k 134 (906)
T PRK14720 57 HLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKK 134 (906)
T ss_pred HHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHH
Confidence 5567899999999999999999888777666 6666555544 899999999999999999
Q ss_pred hHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH------H---HHhc--------------
Q psy17412 99 VLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL------A---IEQV-------------- 155 (240)
Q Consensus 99 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------~---~~~~-------------- 155 (240)
|...++++++.+|+++.+..++|..+... +.++|+.++.+++...-+.... + +...
T Consensus 135 a~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki 213 (906)
T PRK14720 135 LKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKV 213 (906)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHH
Confidence 99999999999999999999999999999 9999999999998753221111 0 1111
Q ss_pred ------cCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 156 ------RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 156 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
......+.-+-.+|...++|++++.+++.+++.+|++..+...++.+|. +.|.. ...++..+++
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 1223445555578888999999999999999999999999999999987 44433 4445544443
No 116
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.47 E-value=3.1e-13 Score=78.87 Aligned_cols=66 Identities=24% Similarity=0.261 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG-QREEAKEYVRQLVEKYP 145 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~ 145 (240)
+..|..+|.+++..|++++|+..|.++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3445555555555555555555555555555555555555555555555 45555555555555544
No 117
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.47 E-value=1.6e-12 Score=80.75 Aligned_cols=98 Identities=36% Similarity=0.396 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
+++.+|.++...|++++|+..++++++..|.+... +..+|.++...+++++|+..+++++...|.+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 70 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADA-----------YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKA 70 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhH
Confidence 35667777777777777777777777777766555 7777777777777777777777777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
+..+|.++...|++++|..++.+++...|
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 77777777777777777777777776655
No 118
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.46 E-value=3e-13 Score=82.08 Aligned_cols=81 Identities=28% Similarity=0.384 Sum_probs=73.0
Q ss_pred hCCHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Q psy17412 59 SGQYEAALVQYDKAIEQVRD--SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEY 136 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 136 (240)
+|+|+.|+.+++++++..|. +...++.+|.|+++.|++++|+..+++ ...+|.++...+.+|.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 466788899999999999999999999 888888889999999999999999999999
Q ss_pred HHHH
Q psy17412 137 VRQL 140 (240)
Q Consensus 137 ~~~a 140 (240)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 119
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.46 E-value=5.7e-12 Score=87.00 Aligned_cols=105 Identities=24% Similarity=0.185 Sum_probs=90.0
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
...+..++.+|..+...|++++|+..|++++...|+. +.++.++|.++...|++++|+..+++++.+.|.....+..
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 3468889999999999999999999999999987663 4589999999999999999999999999999999998888
Q ss_pred HHHHHH-------HcCCHH-------HHHHHHHHHHHcCCCc
Q psy17412 120 KARAMH-------SLGQRE-------EAKEYVRQLVEKYPTR 147 (240)
Q Consensus 120 la~~~~-------~~~~~~-------~A~~~~~~a~~~~~~~ 147 (240)
+|.++. .+|+++ +|+..+++++...|.+
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 888888 777877 5555555666667654
No 120
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.46 E-value=3.7e-12 Score=88.21 Aligned_cols=119 Identities=21% Similarity=0.226 Sum_probs=83.9
Q ss_pred CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHh
Q psy17412 78 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQ 154 (240)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 154 (240)
....+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|.+...
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---- 108 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA---- 108 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH----
Confidence 345567777777777777777777777777665542 4567777777777777777777777777777776665
Q ss_pred ccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 155 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 155 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
+..+|.++...|+...+...+..++. .+++|..++++++..+|++.
T Consensus 109 -------~~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 109 -------LNNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred -------HHHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 77777777777776555544444332 26778888888888888763
No 121
>KOG1127|consensus
Probab=99.45 E-value=3.2e-12 Score=104.78 Aligned_cols=167 Identities=16% Similarity=0.044 Sum_probs=148.8
Q ss_pred hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 59 SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVR 138 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 138 (240)
.++...|...|-+++.+++..+.+|..+|.+|+...+...|..+|+++.++++.+..+.-..+..+....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred HHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17412 139 QLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRE 218 (240)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 218 (240)
.+-+..|..... ..|..+|..|.+.++...|+..|+.+++.+|.+...|..+|.+|...|++.-|++.|.+
T Consensus 551 ~~~qka~a~~~k---------~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 551 RAAQKAPAFACK---------ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHhhhchHHHHH---------hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 555555542221 22666899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHH
Q psy17412 219 LVEKYPTRRKLVENYT 234 (240)
Q Consensus 219 ~~~~~p~~~~~~~~l~ 234 (240)
+..++|.+.-..+..+
T Consensus 622 As~LrP~s~y~~fk~A 637 (1238)
T KOG1127|consen 622 ASLLRPLSKYGRFKEA 637 (1238)
T ss_pred hHhcCcHhHHHHHHHH
Confidence 9999999876655544
No 122
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=1.7e-10 Score=86.06 Aligned_cols=184 Identities=17% Similarity=0.107 Sum_probs=100.5
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
.+...-.+..-+...-..|+++.+-.++.++-+..+++ ..+...++.+....|++..|.....++++..|.++.+....
T Consensus 114 ~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa 193 (400)
T COG3071 114 GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLA 193 (400)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHH
Confidence 33344444555555556666666666666666553322 34455566666666666666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHH---------------------------HHHh----ccCchHHHHHHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKL---------------------------AIEQ----VRDSPVLYTNRALTL 169 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------------~~~~----~~~~~~~~~~la~~~ 169 (240)
..+|...|+|.+....+.+.-+..--+... ..+. ...++.+...++.-+
T Consensus 194 ~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~l 273 (400)
T COG3071 194 LRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERL 273 (400)
T ss_pred HHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHH
Confidence 666666666666665555444322111100 0111 112344455555555
Q ss_pred HHhcccCchhhHHHHHhhc-------------------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17412 170 LHLQLYDPVLPDCDKALRL-------------------------------DEDNMKAHLYKARAMHNLGQREEAKEYIRE 218 (240)
Q Consensus 170 ~~~~~~~~A~~~~~~~l~~-------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 218 (240)
..+|+.++|.+..+.+++. .|+++..+..+|..+.+.+.+.+|..+|+.
T Consensus 274 i~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred HHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555555544432 255566666666666666666666666666
Q ss_pred HHHhCCC
Q psy17412 219 LVEKYPT 225 (240)
Q Consensus 219 ~~~~~p~ 225 (240)
++...|+
T Consensus 354 Al~~~~s 360 (400)
T COG3071 354 ALKLRPS 360 (400)
T ss_pred HHhcCCC
Confidence 6655554
No 123
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.45 E-value=8.5e-12 Score=99.78 Aligned_cols=137 Identities=12% Similarity=0.001 Sum_probs=85.4
Q ss_pred HHHHHHHhHhHHHHhCC---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcC--------chHHHHHHHHhc--Cc
Q psy17412 45 IADHFKANGNKAFQSGQ---YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYD--------PVLPDCDKALRL--DE 111 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~--------~A~~~~~~~~~~--~~ 111 (240)
.+-.++..|..++..++ ...|+.+|+++++.+|+++.++..++.+|.....+. .+.....+++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 45555677777776554 778999999999999999888888888776543332 222333333332 44
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 112 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
..+.++..+|......|++++|...+++++.++|+ ... |..+|.++...|++++|+..+++++.++|.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a-----------~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLN-----------YVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 44555555565555566666666666666666653 333 566666666666666666666666666665
Q ss_pred hH
Q psy17412 192 NM 193 (240)
Q Consensus 192 ~~ 193 (240)
++
T Consensus 486 ~p 487 (517)
T PRK10153 486 EN 487 (517)
T ss_pred Cc
Confidence 44
No 124
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.45 E-value=9.7e-12 Score=83.60 Aligned_cols=89 Identities=22% Similarity=0.160 Sum_probs=40.5
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHHHH
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYKAR 122 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~ 122 (240)
.+.........++...+...++..+..+|++ ..+.+.+|.+++..|++++|...|+.++...|+. ..+.+.+|.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3333333344555555555555555555544 2334444444444455555555554444433222 223444444
Q ss_pred HHHHcCCHHHHHHHH
Q psy17412 123 AMHSLGQREEAKEYV 137 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~ 137 (240)
++...|++++|+..+
T Consensus 94 ~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 94 ILLQQGQYDEALATL 108 (145)
T ss_pred HHHHcCCHHHHHHHH
Confidence 444444444444444
No 125
>KOG3785|consensus
Probab=99.45 E-value=8.7e-12 Score=91.86 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=104.2
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQ 129 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 129 (240)
..+|.+++..|+|++|...|+-+.+.+.-+...+.++|-|++.+|.|.+|.....++ |+++-....+-.+..+.++
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCc
Confidence 334555555555555555555555544444455555555555555555554444333 2333222222222233333
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCH
Q psy17412 130 REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQR 209 (240)
Q Consensus 130 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 209 (240)
-++- -.|...+ .+..+-...+|.+.+..-.|.+|+..|++++.-+|+....-..++.||.++.-+
T Consensus 137 Ek~~-~~fh~~L--------------qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYy 201 (557)
T KOG3785|consen 137 EKRI-LTFHSSL--------------QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYY 201 (557)
T ss_pred HHHH-HHHHHHH--------------hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchh
Confidence 2221 1122211 122233677888888888999999999999999999998999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 210 EEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 210 ~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
+-+.+.+.-.++..|+++-+....
T Consensus 202 dvsqevl~vYL~q~pdStiA~NLk 225 (557)
T KOG3785|consen 202 DVSQEVLKVYLRQFPDSTIAKNLK 225 (557)
T ss_pred hhHHHHHHHHHHhCCCcHHHHHHH
Confidence 999999999999999987765443
No 126
>PRK11906 transcriptional regulator; Provisional
Probab=99.44 E-value=1.4e-11 Score=94.48 Aligned_cols=162 Identities=17% Similarity=0.044 Sum_probs=137.3
Q ss_pred HHHHhHhHHHHhCC---HHHHHHHHHHHH---HhcCCChHHHHHHHHHHHHc---c------CcCchHHHHHHHHhcCcc
Q psy17412 48 HFKANGNKAFQSGQ---YEAALVQYDKAI---EQVRDSPVLYTNRALTLLHL---Q------LYDPVLPDCDKALRLDED 112 (240)
Q Consensus 48 ~~~~~a~~~~~~~~---~~~A~~~~~~a~---~~~~~~~~~~~~la~~~~~~---~------~~~~A~~~~~~~~~~~~~ 112 (240)
.++..|...+..+. ...|+.+|.+++ ..+|+.+.++..++.|++.. | +..+|.+..+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 44677777766654 568999999999 89999999999999999875 1 234678889999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 113 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
++.++..+|.+....++++.|...|++++.++|+.... ++..|.+..-.|+.++|++.++++++++|..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~-----------~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL-----------YYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 99999999999999999999999999999999999888 9999999999999999999999999999987
Q ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHH
Q psy17412 193 MKAHLYKARA-MHNLGQREEAKEYIRELV 220 (240)
Q Consensus 193 ~~~~~~la~~-~~~~g~~~~A~~~~~~~~ 220 (240)
..+-...-.+ .+.....++|+..|-+-.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 406 RKAVVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred hHHHHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 6554444344 445667788888776543
No 127
>KOG0543|consensus
Probab=99.44 E-value=3e-12 Score=95.84 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH----HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
.....|..+++.|+|..|...|++++..-+..... .-........++.|++.|+.++++|.+|+..++++|..+|+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 45667899999999999999999998764422111 01111112356999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 192 NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
|+.+++..|.++..+|+++.|+..|++++++.|+|..+...+..|-++
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888877553
No 128
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.43 E-value=1.3e-11 Score=83.00 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=78.0
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
-...+.+.+|..++..|++++|+..|+.++...|+. ..+...+|.++...|++++|+..++.. .-.+-.+.++..+
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~ 124 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELL 124 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHH
Confidence 346778888899999999999999999998887655 457778899999999999999888663 3334456678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLV 141 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~ 141 (240)
|.++...|++++|+..|++++
T Consensus 125 Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 125 GDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999888764
No 129
>KOG4648|consensus
Probab=99.43 E-value=3.3e-13 Score=98.78 Aligned_cols=102 Identities=33% Similarity=0.471 Sum_probs=97.9
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG 128 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 128 (240)
+-..|+.|+++|.|++|+.+|.+++..+|.++..+.+++.+|++...+..|...+..++.++..+..+|...|..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCchHH
Q psy17412 129 QREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 129 ~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
+..+|.+.++.++++.|++...
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHH
Confidence 9999999999999999987655
No 130
>PRK15331 chaperone protein SicA; Provisional
Probab=99.42 E-value=7.1e-12 Score=83.16 Aligned_cols=97 Identities=8% Similarity=-0.177 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCch
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (240)
-...+..|.-++..|++++|...|+-+...+|.+++.+..+|.++..+++|++|+..|..+..+.++++..
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p--------- 107 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP--------- 107 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc---------
Confidence 44455555555566666666666665555555555556666666666666666666666665555555554
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhh
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALR 187 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~ 187 (240)
.+..|.|++.+|+.+.|+..|..+++
T Consensus 108 --~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 --VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred --cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 55566666666666666666655555
No 131
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.42 E-value=1.1e-11 Score=90.69 Aligned_cols=115 Identities=15% Similarity=0.140 Sum_probs=99.9
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-
Q psy17412 114 MKAHLYKARAM-HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED- 191 (240)
Q Consensus 114 ~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~- 191 (240)
...++..|..+ ...|+|++|+..|+..++.+|++... +.+++.+|.+|+..|++++|+..|.++++.+|+
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a--------~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQ--------PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 46778888766 66799999999999999999998543 455999999999999999999999999988877
Q ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 192 --NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 192 --~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
.+++++.+|.++..+|++++|...|+++++.+|++..+.....++
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 588899999999999999999999999999999987765554443
No 132
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.42 E-value=8.2e-11 Score=83.48 Aligned_cols=185 Identities=21% Similarity=0.183 Sum_probs=148.3
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH---H
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK---A 116 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~ 116 (240)
...+..|+..|...+..|+|++|++.|+......|.+ ..+...++.++++.+++++|+..+++-+.+.|.++. +
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 3467889999999999999999999999999988876 568889999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCchHH-----HHHh-ccCchHHHHHHHHHHHHhcccCchhhHH
Q psy17412 117 HLYKARAMHSL--------GQREEAKEYVRQLVEKYPTRRKL-----AIEQ-VRDSPVLYTNRALTLLHLQLYDPVLPDC 182 (240)
Q Consensus 117 ~~~la~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~ 182 (240)
++..|.+++.. .--.+|...++..+...|++.-. .+.. ....+..-..+|..|.+.|.+..|+.-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 77888876543 22356888899999999987544 0111 1122344677889999999999999999
Q ss_pred HHHhhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 183 DKALRLDEDN---MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 183 ~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
+.+++..|+. .+++..+..+|..+|-.++|...-.-.-...|+++
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 9999987764 56788899999999999999876654444455554
No 133
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.41 E-value=1.4e-12 Score=75.07 Aligned_cols=65 Identities=26% Similarity=0.324 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++.+|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999986
No 134
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1e-11 Score=89.91 Aligned_cols=121 Identities=18% Similarity=0.133 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHH
Q psy17412 62 YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG---QREEAKEYVR 138 (240)
Q Consensus 62 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~ 138 (240)
.+.-+.-++..+..+|+++.-|..+|.+|+..|++..|...|.+++++.|++++.+..+|.+++.+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4566777788888899999999999999999999999999999999999999999999998877664 4567889999
Q ss_pred HHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH
Q psy17412 139 QLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 193 (240)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 193 (240)
++++.+|.+... .+.+|..++..|+|.+|...++..++..|.+.
T Consensus 218 ~al~~D~~~ira-----------l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPANIRA-----------LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCccHHH-----------HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999888 99999999999999999999999999887653
No 135
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.41 E-value=1.2e-12 Score=79.46 Aligned_cols=84 Identities=29% Similarity=0.372 Sum_probs=72.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHH
Q psy17412 126 SLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN 205 (240)
Q Consensus 126 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 205 (240)
.+|++++|+..++++++..|.++. ...++.+|.++++.|+|++|+..+++ .+.+|.+....+.+|.++..
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~---------~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPN---------SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHH---------HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChh---------HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999996321 22378899999999999999999999 88888888999999999999
Q ss_pred cCCHHHHHHHHHHH
Q psy17412 206 LGQREEAKEYIREL 219 (240)
Q Consensus 206 ~g~~~~A~~~~~~~ 219 (240)
+|++++|+..++++
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 99999999999875
No 136
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.40 E-value=1.4e-11 Score=98.51 Aligned_cols=141 Identities=15% Similarity=0.052 Sum_probs=112.0
Q ss_pred CCChHH--HHHHHHHHHHccC---cCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHc
Q psy17412 77 RDSPVL--YTNRALTLLHLQL---YDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG--------QREEAKEYVRQLVEK 143 (240)
Q Consensus 77 ~~~~~~--~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~a~~~ 143 (240)
|.+..+ ++..|..+...++ ...|+.+|+++++++|+++.++..++.++.... +...+....++++.+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 444443 3456666655443 779999999999999999999999888776543 234455555555553
Q ss_pred --CCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 144 --YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 144 --~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
.|.++.. +..+|......|++++|...+++++.++|+ ..++..+|.++...|++++|++.|++++.
T Consensus 414 ~~~~~~~~~-----------~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 414 PELNVLPRI-----------YEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ccCcCChHH-----------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444 888999999999999999999999999995 78999999999999999999999999999
Q ss_pred hCCCcHHH
Q psy17412 222 KYPTRRKL 229 (240)
Q Consensus 222 ~~p~~~~~ 229 (240)
++|.++..
T Consensus 482 L~P~~pt~ 489 (517)
T PRK10153 482 LRPGENTL 489 (517)
T ss_pred cCCCCchH
Confidence 99998753
No 137
>PRK15331 chaperone protein SicA; Provisional
Probab=99.39 E-value=1.4e-11 Score=81.82 Aligned_cols=109 Identities=11% Similarity=0.091 Sum_probs=101.3
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
...++..+..+..|..++..|++++|...|+-....+|.++..|..+|.|+..+++|++|+..|..+..++++++...+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRK 149 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 149 (240)
.|.|++.+|+.+.|..+|+.++. .|.+..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 99999999999999999999998 455433
No 138
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.39 E-value=1e-11 Score=92.80 Aligned_cols=176 Identities=16% Similarity=0.145 Sum_probs=134.7
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc------c
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRD------SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE------D 112 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~ 112 (240)
-++.+...|..|...|+|++|.+.|.++...... ....+...+.++.+. ++++|+.++++++.+.- .
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4667778899999999999999999999876432 145677777777666 99999999999997642 2
Q ss_pred cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 113 NMKAHLYKARAMHSL-GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 113 ~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
-..++..+|.++... |++++|+.+|++++++....... ......+..+|.++.+.|+|++|++.|+++....-+
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~-----~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP-----HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H-----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh-----hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 256889999999999 99999999999999875432211 112456889999999999999999999998764321
Q ss_pred ------h-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 192 ------N-MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 192 ------~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
. ...++..+.+++..|+...|...+++....+|..
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 1 2345677889999999999999999999998854
No 139
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.38 E-value=1.3e-11 Score=90.28 Aligned_cols=108 Identities=13% Similarity=0.109 Sum_probs=96.7
Q ss_pred HHHHHHHHHH-HHccCcCchHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhcc
Q psy17412 81 VLYTNRALTL-LHLQLYDPVLPDCDKALRLDEDN---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156 (240)
Q Consensus 81 ~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 156 (240)
...+..|..+ +..|+|++|+..|++.+...|++ +.+++.+|.+++..|++++|+..|+++++.+|+++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~------ 216 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA------ 216 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------
Confidence 5677777766 56799999999999999999987 5799999999999999999999999999999987766
Q ss_pred CchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHH
Q psy17412 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
+++++.+|.++...|++++|...|+++++..|+...+.
T Consensus 217 --~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 217 --ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 77799999999999999999999999999999876543
No 140
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.38 E-value=3.3e-10 Score=90.38 Aligned_cols=174 Identities=21% Similarity=0.179 Sum_probs=140.3
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccC-----cCchHHHHHHHHhcC---
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL-----YDPVLPDCDKALRLD--- 110 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~~~--- 110 (240)
...-.+....+...|.++...|++++|...|...++.+|++...+..+..+...... .+.-...|+......
T Consensus 31 ~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s 110 (517)
T PF12569_consen 31 EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRS 110 (517)
T ss_pred hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccc
Confidence 445667788889999999999999999999999999999998877777776622211 111122222211100
Q ss_pred ------------------------------------------------------------------------------cc
Q psy17412 111 ------------------------------------------------------------------------------ED 112 (240)
Q Consensus 111 ------------------------------------------------------------------------------~~ 112 (240)
|.
T Consensus 111 ~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p 190 (517)
T PF12569_consen 111 DAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPP 190 (517)
T ss_pred cchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCc
Confidence 01
Q ss_pred c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh
Q psy17412 113 N--MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 113 ~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 190 (240)
. ..+++.+|+.|...|++++|+.+++++++..|..++. +...|.++.+.|++.+|...++.+-++++
T Consensus 191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el-----------y~~KarilKh~G~~~~Aa~~~~~Ar~LD~ 259 (517)
T PF12569_consen 191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL-----------YMTKARILKHAGDLKEAAEAMDEARELDL 259 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHhCCh
Confidence 1 1356888999999999999999999999999998888 99999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 191 DNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 191 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
.+-.+....+..+.+.|+.++|.+.+....+.+
T Consensus 260 ~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 260 ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 998888999999999999999999988776554
No 141
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.37 E-value=3.3e-12 Score=73.49 Aligned_cols=64 Identities=27% Similarity=0.340 Sum_probs=44.3
Q ss_pred HHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q psy17412 85 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR 148 (240)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 148 (240)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566777777777777777777777777777777777777777777777777777777777653
No 142
>KOG4234|consensus
Probab=99.37 E-value=1.2e-11 Score=83.91 Aligned_cols=115 Identities=27% Similarity=0.428 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
.+..-|.-++..|+|++|..-|..++.+.|..+.- ..+.+|.+.|.++++++.++.|+..+.++++++|++..+
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e------~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTE------ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHH------HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence 34556788899999999999999999999986543 335569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+...|.+|.++..+++|+..|+++++.+|...+++...+++
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999999999999999998888877765
No 143
>KOG4340|consensus
Probab=99.36 E-value=2.1e-11 Score=87.94 Aligned_cols=166 Identities=16% Similarity=0.123 Sum_probs=128.2
Q ss_pred HHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Q psy17412 57 FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEY 136 (240)
Q Consensus 57 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 136 (240)
.+..+|..|++++..-.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|......+.-+..+++.+.+.+|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 56667778888887777777777777777888888888888888888888777787777777777777777777777766
Q ss_pred HHHHHHc----------------CCCc---hHHHHHhcc--CchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 137 VRQLVEK----------------YPTR---RKLAIEQVR--DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 137 ~~~a~~~----------------~~~~---~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
....... ..++ ....++..| ..++...+.|.+.++.|+++.|++-|+.+++...-++..
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll 180 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL 180 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence 5443221 1111 011233444 456779999999999999999999999999998888889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
-++++.+++..|+++.|+++..++++.
T Consensus 181 AYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 181 AYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999998887754
No 144
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.33 E-value=2.1e-11 Score=90.78 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCch
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (240)
+.+....|.++...|++++|++.+.+. .+.++......++..+++++.|.+.++..-+.+++..-.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~--------- 167 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILT--------- 167 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHH---------
Confidence 445566777888889999998888765 456777888899999999999999999988887765443
Q ss_pred HHHHHHHHHHHHhc--ccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 160 VLYTNRALTLLHLQ--LYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 160 ~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
....+++....| .+.+|...|+...+..+.++..+..++.+++.+|++++|...+.+++..+|.++++..++.-+
T Consensus 168 --qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 168 --QLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC 244 (290)
T ss_dssp --HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 444455555555 699999999999888888899999999999999999999999999999999999988887654
No 145
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.33 E-value=2.3e-09 Score=92.59 Aligned_cols=161 Identities=15% Similarity=0.062 Sum_probs=80.9
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHccCcCchHHHHHHHHhc--CcccHHHHHHHHHHHH
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQV-RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--DEDNMKAHLYKARAMH 125 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~ 125 (240)
+..+...+.+.|++++|.++|+...+.+ +.+...|..+...|.+.|++++|...|++..+. .|+ ...+..+...+.
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~ 660 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Confidence 3333334444444444444444443332 122333444444444444444444444444332 121 223334444444
Q ss_pred HcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc--ChhhHHHHHHHHHHH
Q psy17412 126 SLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--DEDNMKAHLYKARAM 203 (240)
Q Consensus 126 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~ 203 (240)
+.|++++|...++...+... ..+...+..+...|.+.|++++|.+.|++..+. .|+ ...|..+...|
T Consensus 661 k~G~~eeA~~l~~eM~k~G~----------~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy 729 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGI----------KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITAL 729 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCC----------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Confidence 44444444444444443221 123345677777777777777777777766542 343 45577777777
Q ss_pred HHcCCHHHHHHHHHHHHH
Q psy17412 204 HNLGQREEAKEYIRELVE 221 (240)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~ 221 (240)
.+.|+.++|.+.|++...
T Consensus 730 ~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777777777777776554
No 146
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.32 E-value=9.6e-11 Score=83.89 Aligned_cols=111 Identities=17% Similarity=0.203 Sum_probs=102.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh---H
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---M 193 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~ 193 (240)
.|..|.-++..|+|..|...|..-++..|++... +..+++||.+++.+|+|+.|...|..+.+-.|++ +
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~--------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT--------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc--------chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh
Confidence 7899999999999999999999999999998766 7889999999999999999999999999988764 7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
++++.+|.+...+|+.++|...|+++++.+|..+.+...-..
T Consensus 216 dallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 216 DALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 899999999999999999999999999999998877655443
No 147
>PRK11906 transcriptional regulator; Provisional
Probab=99.30 E-value=1.3e-10 Score=89.18 Aligned_cols=134 Identities=16% Similarity=0.003 Sum_probs=118.6
Q ss_pred HHHHHHHHHcc---CcCchHHHHHHHH---hcCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCch
Q psy17412 84 TNRALTLLHLQ---LYDPVLPDCDKAL---RLDEDNMKAHLYKARAMHSL---------GQREEAKEYVRQLVEKYPTRR 148 (240)
Q Consensus 84 ~~la~~~~~~~---~~~~A~~~~~~~~---~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~ 148 (240)
+.+|...+..+ ..+.|+..|.+++ .++|+...++..++.|++.. ....+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 55666665544 3567889999999 99999999999999998765 234678899999999999998
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 149 KLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 149 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
.. +..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|...++++++++|....
T Consensus 339 ~a-----------~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 339 KI-----------LAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HH-----------HHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 88 9999999999999999999999999999999999999999999999999999999999999997643
No 148
>KOG2376|consensus
Probab=99.30 E-value=2.1e-10 Score=89.59 Aligned_cols=160 Identities=21% Similarity=0.208 Sum_probs=130.6
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 126 (240)
..++.--+.+...|+|++|.....+.+...|++..++.....+..+.++|++|+...++-......+. ..+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHH
Confidence 44555556778899999999999999999999999999999999999999999966655443222222 23789999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh---------------
Q psy17412 127 LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED--------------- 191 (240)
Q Consensus 127 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--------------- 191 (240)
+++.++|+..++ ..++.+... ....|.+++++|+|++|+..|+..++.+.+
T Consensus 92 lnk~Dealk~~~---~~~~~~~~l-----------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a 157 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKL-----------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA 157 (652)
T ss_pred cccHHHHHHHHh---cccccchHH-----------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 999999999998 445554445 888899999999999999999998665421
Q ss_pred ----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 192 ----------------NMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 192 ----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
..+..++.|.++...|+|.+|++.++++++
T Consensus 158 ~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 158 ALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred hhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 245678999999999999999999999943
No 149
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.29 E-value=1.3e-08 Score=76.23 Aligned_cols=186 Identities=18% Similarity=0.173 Sum_probs=149.8
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc-ccHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE-DNMKAHLYKA 121 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 121 (240)
...+......|..-+..|+|.+|.+...+.-+..+.....+..-+.+--++|+++.+-.++.++-+..+ +...+...++
T Consensus 81 rrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltra 160 (400)
T COG3071 81 RRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRA 160 (400)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 345667777888888999999999999999888888888888888999999999999999999999844 3456788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC------------
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD------------ 189 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------------ 189 (240)
.+....|+++.|.....++++..|.++.. ......+|.+.|++.+...++.+.-+..
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~v-----------lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~ 229 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPEV-----------LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ 229 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChHH-----------HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH
Confidence 99999999999999999999999999888 7777788888888887777666544321
Q ss_pred --------------------------h----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------
Q psy17412 190 --------------------------E----DNMKAHLYKARAMHNLGQREEAKEYIRELVE------------------ 221 (240)
Q Consensus 190 --------------------------~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------------ 221 (240)
| +++.+...++.-+...|++++|.+..+.+++
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d 309 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGD 309 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCC
Confidence 1 2355667777788888988888877776653
Q ss_pred -------------hCCCcHHHHHHHHHhhhc
Q psy17412 222 -------------KYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 222 -------------~~p~~~~~~~~l~~~~~~ 239 (240)
..|++|.++..+++++-+
T Consensus 310 ~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k 340 (400)
T COG3071 310 PEPLIKAAEKWLKQHPEDPLLLSTLGRLALK 340 (400)
T ss_pred chHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 456777777777776543
No 150
>KOG4234|consensus
Probab=99.29 E-value=1.6e-10 Score=78.56 Aligned_cols=108 Identities=34% Similarity=0.586 Sum_probs=99.2
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
...+..+-.-|+-++..|+|.+|..-|..|+...|.. ..+|.+.|.+.++++.++.|+..+.++++++|.+..++
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 3456677888999999999999999999999998875 45788999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
...|.+|.++..|++|+..|+++++.+|....+
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 999999999999999999999999999986554
No 151
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.28 E-value=1.5e-10 Score=89.05 Aligned_cols=121 Identities=21% Similarity=0.189 Sum_probs=108.7
Q ss_pred HHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHH
Q psy17412 86 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165 (240)
Q Consensus 86 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 165 (240)
+-.+....++++.|+..+++..+.+|+ +...++.++...++..+|+..++++++..|.+... +...
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~L-----------L~~Q 240 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSEL-----------LNLQ 240 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH-----------HHHH
Confidence 444555678899999999999988875 56678999999999999999999999999988777 9999
Q ss_pred HHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 166 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
+..+...++++.|+...+++++..|.+...|..++.+|..+|++++|+..++.+-
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999998877554
No 152
>KOG1130|consensus
Probab=99.26 E-value=2.4e-11 Score=91.22 Aligned_cols=180 Identities=17% Similarity=0.119 Sum_probs=137.9
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCC--------------------HHHHHHHHHHHHHhcCC------ChHHHHHHHHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQ--------------------YEAALVQYDKAIEQVRD------SPVLYTNRALTLL 91 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~ 91 (240)
+........++++++|.+|...|+ ++.|.++|..-+++... ...++-++|..|+
T Consensus 127 eLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyY 206 (639)
T KOG1130|consen 127 ELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYY 206 (639)
T ss_pred HHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceee
Confidence 344455678899999999987764 34566666665555332 2457888999999
Q ss_pred HccCcCchHHHHHHHHhcCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHH
Q psy17412 92 HLQLYDPVLPDCDKALRLDED------NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165 (240)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 165 (240)
-+|+|+.|+..-+.-+.+... .-.++.++|.++.-+|+++.|+++|+..+.+.-+ +..-...+...+.+
T Consensus 207 lLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie-----lg~r~vEAQscYSL 281 (639)
T KOG1130|consen 207 LLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE-----LGNRTVEAQSCYSL 281 (639)
T ss_pred eeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH-----hcchhHHHHHHHHh
Confidence 999999999988777665432 2358899999999999999999999998765432 11111224457889
Q ss_pred HHHHHHhcccCchhhHHHHHhhcCh------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 166 ALTLLHLQLYDPVLPDCDKALRLDE------DNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 166 a~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
|..|.-..++++|+.++.+-+.+.. ....+++.+|..+-.+|..++|+.+.+..++.
T Consensus 282 gNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 282 GNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999998776643 24678899999999999999999998887765
No 153
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.26 E-value=1.1e-10 Score=83.57 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=100.0
Q ss_pred HHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCch
Q psy17412 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159 (240)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (240)
.++.|.-++..|+|..|...|..-++..|++ +.++++||.+++.+|++++|...|..+.+-.|+++.. |
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA--------p 215 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA--------P 215 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC--------h
Confidence 6889999999999999999999999999876 5799999999999999999999999999999998776 8
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
+.++.+|.+...+|+.++|...|.++++..|+...+....
T Consensus 216 dallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 216 DALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 8899999999999999999999999999999877665443
No 154
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.26 E-value=8.1e-09 Score=89.31 Aligned_cols=176 Identities=10% Similarity=0.055 Sum_probs=84.8
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-cccHHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRD-SPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-EDNMKAHLYKARA 123 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 123 (240)
...+..+...+.+.|++++|.+.|++..+.... +...|..+...|.+.|++++|.+.|....... ..+...|..+...
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a 551 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344445555555555566665555555544321 34455555555555666666655555554322 1123445555555
Q ss_pred HHHcCCHHHHHHHHHHHHHc----CCCchHH---------------H--------HHhccCchHHHHHHHHHHHHhcccC
Q psy17412 124 MHSLGQREEAKEYVRQLVEK----YPTRRKL---------------A--------IEQVRDSPVLYTNRALTLLHLQLYD 176 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~----~~~~~~~---------------~--------~~~~~~~~~~~~~la~~~~~~~~~~ 176 (240)
+.+.|++++|...+++.... .|+.... + -...+.+...|..+...|.+.|+++
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~d 631 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Confidence 55555555555555555431 2321100 0 0000112233555555555555555
Q ss_pred chhhHHHHHhhc--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 177 PVLPDCDKALRL--DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 177 ~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
+|+..|.+..+. .|+ ...+..+...+.+.|++++|.+.+.+..+.
T Consensus 632 eAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 632 FALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 555555555443 232 334455555555555555555555555543
No 155
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.25 E-value=2.3e-10 Score=74.38 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=96.1
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH---HH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK---AH 117 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~ 117 (240)
..+..++..|...+..|+|++|++.|+......|.. ..+...+|.+|+..+++++|+..+++.++++|.++. ++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 356788999999999999999999999999998865 568889999999999999999999999999998754 88
Q ss_pred HHHHHHHHHcCC---------------HHHHHHHHHHHHHcCCCchHH
Q psy17412 118 LYKARAMHSLGQ---------------REEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 118 ~~la~~~~~~~~---------------~~~A~~~~~~a~~~~~~~~~~ 150 (240)
+..|.+++.+.. ..+|...|++.++..|++...
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999998876 889999999999999997644
No 156
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.24 E-value=3.5e-10 Score=72.42 Aligned_cols=97 Identities=22% Similarity=0.182 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCc
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDED---NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDS 158 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (240)
+++.+|.++-..|+.++|+..|++++..... -..++..+|.++..+|++++|+..+++++...|++...
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~-------- 74 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN-------- 74 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc--------
Confidence 4455555555555555555555555554322 23355555555555555555555555555554541111
Q ss_pred hHHHHHHHHHHHHhcccCchhhHHHHHh
Q psy17412 159 PVLYTNRALTLLHLQLYDPVLPDCDKAL 186 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~l 186 (240)
..+...++.++...|+.++|+..+..++
T Consensus 75 ~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 75 AALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1124445555555555555555554444
No 157
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.24 E-value=7.2e-10 Score=93.26 Aligned_cols=187 Identities=12% Similarity=-0.004 Sum_probs=100.6
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQV-RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
...+..+...+.+.|++++|.+.+...++.. +.+..++..+...|.+.|+.++|...|++..+ .+...|..+...|
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y 401 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGY 401 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHH
Confidence 3455555555556666666666665555543 33344555555555555555555555555432 1233455555555
Q ss_pred HHcCCHHHHHHHHHHHHHc--CCCchHH----------------------HHHh--ccCchHHHHHHHHHHHHhcccCch
Q psy17412 125 HSLGQREEAKEYVRQLVEK--YPTRRKL----------------------AIEQ--VRDSPVLYTNRALTLLHLQLYDPV 178 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~--~~~~~~~----------------------~~~~--~~~~~~~~~~la~~~~~~~~~~~A 178 (240)
.+.|+.++|+..|++..+. .|+.... .... ...+...|..+...+.+.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 5555555555555554442 2222111 0000 011223466666677777777777
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 179 LPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
.+.+++. ...|+ ...|..+...+...|+.+.|...+++.++..|++...+..+..++
T Consensus 482 ~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 482 YAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred HHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 7666543 22333 445666666677777777777777777777776655555555444
No 158
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.23 E-value=2.5e-11 Score=70.46 Aligned_cols=67 Identities=28% Similarity=0.360 Sum_probs=62.1
Q ss_pred HHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 170 LHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 170 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999999888877654
No 159
>KOG1070|consensus
Probab=99.22 E-value=7.4e-09 Score=88.30 Aligned_cols=183 Identities=10% Similarity=0.009 Sum_probs=154.9
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
.......|..+-+....-|.-+...+.|++|.+.. +...++..+..+|...+++++|.++++..++.......+|...|
T Consensus 1493 eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~ 1571 (1710)
T KOG1070|consen 1493 EEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYA 1571 (1710)
T ss_pred hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHH
Confidence 34455566666666666677778888888888875 33568888999999999999999999999998888889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC--chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPT--RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
..+++.++-+.|...+.+|++.-|. +.+. ....|.+.++.|+.+.+...|+-.+.-+|...+.|..+
T Consensus 1572 ~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~-----------IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1572 DFLLRQNEAEAARELLKRALKSLPKQEHVEF-----------ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVY 1640 (1710)
T ss_pred HHHhcccHHHHHHHHHHHHHhhcchhhhHHH-----------HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHH
Confidence 9999999999999999999999998 5454 88889999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 200 ARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
...-.+.|+.+.+...|++++.+.-.-......+.+-
T Consensus 1641 id~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1641 IDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred HHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 9999999999999999999998765544444444433
No 160
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.22 E-value=5.1e-11 Score=69.16 Aligned_cols=67 Identities=24% Similarity=0.296 Sum_probs=59.5
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 56 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
++..|++++|++.|++++..+|++..++..+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999999999999998877776664
No 161
>KOG4648|consensus
Probab=99.22 E-value=1.2e-10 Score=85.62 Aligned_cols=109 Identities=24% Similarity=0.312 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHH
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
.-..|.-|+++|+|++|+.+|.+++..+|.++.. +.+.+..|++.++|..|...+..++.++.....+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~-----------~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAY 168 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY-----------HINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAY 168 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccc-----------hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 4567999999999999999999999999988877 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
...+.+-..+|+..+|.+.++.++++.|.+.++...++.+
T Consensus 169 SRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 169 SRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 9999999999999999999999999999998887777654
No 162
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.21 E-value=2.2e-09 Score=90.34 Aligned_cols=175 Identities=11% Similarity=0.040 Sum_probs=117.8
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC--cccHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD--EDNMKAHLYKA 121 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la 121 (240)
.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|++.|++..+.. |+ ...+..+.
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll 433 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVL 433 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHH
Confidence 3445555666666666666666666665532 234556666666666666666666666655432 32 33455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc---CCCchHH------------------HHHhc--cCchHHHHHHHHHHHHhcccCch
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEK---YPTRRKL------------------AIEQV--RDSPVLYTNRALTLLHLQLYDPV 178 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~------------------~~~~~--~~~~~~~~~la~~~~~~~~~~~A 178 (240)
..+.+.|..++|...|+...+. .|+.... .+... ..+..+|..+...+...|+++.|
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 5566666666666666665542 2221000 01111 12345688888999999999999
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 179 LPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
...+++.++..|++...+..++.+|...|++++|.+.++...+.
T Consensus 514 ~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999987755
No 163
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.21 E-value=8.4e-10 Score=71.83 Aligned_cols=125 Identities=19% Similarity=0.154 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhcc
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 156 (240)
+..++.-|...++.|+|++|++.|+.+....|.. ..+.+.+|.+++..+++++|+..+++.++++|+++.+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v------ 83 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV------ 83 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc------
Confidence 4566777777777778888877777777776543 4577777777777788888888888877777777665
Q ss_pred CchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
+.+++..|.+++.... .++..+- ..+.+|. ...+|...|+++++..|+++-+..
T Consensus 84 --dYa~Y~~gL~~~~~~~--~~~~~~~-~~drD~~----------------~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 84 --DYAYYMRGLSYYEQDE--GSLQSFF-RSDRDPT----------------PARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred --cHHHHHHHHHHHHHhh--hHHhhhc-ccccCcH----------------HHHHHHHHHHHHHHHCcCChhHHH
Confidence 6667777777666544 1111111 2222222 234788888888888888765543
No 164
>KOG1915|consensus
Probab=99.21 E-value=2.6e-08 Score=76.56 Aligned_cols=174 Identities=10% Similarity=0.020 Sum_probs=145.6
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
..+..+...|..-|.--.+++++..|...+++|+..+..+...|...+.+-++..+...|...+++++..-|.....|+.
T Consensus 67 rrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK 146 (677)
T KOG1915|consen 67 RRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK 146 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH
Confidence 34455678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
...+-..+|+..-|.+.|++-++..|+. .+|......-.+.+..+.|..+|++-+-.+|+ +..|...
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w~P~e------------qaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wiky 213 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEWEPDE------------QAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKY 213 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcCCCcH------------HHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHH
Confidence 9999999999999999999999999973 22666666666667777777777777777765 5667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 200 ARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
+..-.+.|+..-|...|+.++....++
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 777777777777777777777665543
No 165
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.20 E-value=4.4e-10 Score=86.50 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=105.1
Q ss_pred hHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Q psy17412 54 NKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEA 133 (240)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 133 (240)
..+...++++.|++.+++..+.+|+ +...++.++...++..+|+..+++++...|.+...+...+..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 4445578899999999999888865 5566899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 134 KEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
+...+++++..|.+... |..|+.+|...|+++.|+-.++.+
T Consensus 254 L~iAk~av~lsP~~f~~-----------W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFET-----------WYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHH-----------HHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999998888 999999999999999999777654
No 166
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.18 E-value=1.3e-10 Score=68.49 Aligned_cols=70 Identities=27% Similarity=0.329 Sum_probs=65.1
Q ss_pred HHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 166 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
..++...+++++|++++++++..+|+++..+..+|.++..+|++++|...++++++..|+++......+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5678899999999999999999999999999999999999999999999999999999999887765544
No 167
>KOG1130|consensus
Probab=99.18 E-value=3e-11 Score=90.72 Aligned_cols=178 Identities=19% Similarity=0.158 Sum_probs=112.5
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc------c
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQV------RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE------D 112 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~ 112 (240)
....|.++|+.|+..++|.+|+++-..-+.+. -..+...-++|..+-.+|.|++|+.++.+-+.+.. .
T Consensus 54 LSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~ 133 (639)
T KOG1130|consen 54 LSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVL 133 (639)
T ss_pred HHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHh
Confidence 34556677888888888888877654433221 12244555778888888888888877776654432 2
Q ss_pred cHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHcCCCchHH--HHHhccCchHHHHHHHHHHHHhcccCc
Q psy17412 113 NMKAHLYKARAMHSLGQR-------------EEAKEYVRQLVEKYPTRRKL--AIEQVRDSPVLYTNRALTLLHLQLYDP 177 (240)
Q Consensus 113 ~~~~~~~la~~~~~~~~~-------------~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~ 177 (240)
...++|++|.+|...|+- +++...++.+.+....+-.. .+..-......+-++|..|+-+|+|++
T Consensus 134 e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 134 ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence 345788888888766542 33444444444433332222 011111233557778888888888888
Q ss_pred hhhHHHHHhhcChh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 178 VLPDCDKALRLDED------NMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 178 A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
|+..-+.-+.+... .-.++.++|.++.-+|+++.|+++|+..+.+
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 88877776665443 2456788888888888888888888877644
No 168
>KOG3785|consensus
Probab=99.18 E-value=2.9e-09 Score=78.90 Aligned_cols=154 Identities=19% Similarity=0.106 Sum_probs=115.8
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
.+...++.+.++|.+++-.|.|.+|.....+ .|+++.....+-.+-.+.++-++- -.|...++ +..+-...+
T Consensus 86 ~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlfhlahklndEk~~-~~fh~~Lq---D~~EdqLSL 157 (557)
T KOG3785|consen 86 KDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLFHLAHKLNDEKRI-LTFHSSLQ---DTLEDQLSL 157 (557)
T ss_pred cCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHHhCcHHHH-HHHHHHHh---hhHHHHHhH
Confidence 3445678889999999999999999776544 467776665555555666665443 33444333 233456778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
+.+.+..-.|++|++.|++++.-+|+.... -..+|.||+++.-|+-+.+.+.-.++..|+++-+...++
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~dn~ey~al-----------NVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQDNPEYIAL-----------NVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhh-----------HHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 888888888999999999999999887666 788999999999999999999999999999988887777
Q ss_pred HHHHHcCCHHHHH
Q psy17412 201 RAMHNLGQREEAK 213 (240)
Q Consensus 201 ~~~~~~g~~~~A~ 213 (240)
...+++=+-..|.
T Consensus 227 cn~fRl~ngr~ae 239 (557)
T KOG3785|consen 227 CNLFRLINGRTAE 239 (557)
T ss_pred HHHhhhhccchhH
Confidence 7766643333333
No 169
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.17 E-value=1e-09 Score=70.23 Aligned_cols=96 Identities=24% Similarity=0.218 Sum_probs=86.8
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc---cHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED---NMKAHLYK 120 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l 120 (240)
.+++..|.++-..|+.++|+.+|++++....+. ..++..+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468899999999999999999999999975444 568999999999999999999999999998888 77788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~ 142 (240)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999977764
No 170
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.16 E-value=6.3e-09 Score=74.08 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=125.9
Q ss_pred ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhc
Q psy17412 79 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQV 155 (240)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 155 (240)
.+..++.-|...++.|++++|...|+.+....|.. ..+...++.++++.+++++|+...++-+++.|+++..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~----- 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA----- 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-----
Confidence 46789999999999999999999999999988755 5689999999999999999999999999999998876
Q ss_pred cCchHHHHHHHHHHHHh--------cccCchhhHHHHHhhcChhhH-----------------HHHHHHHHHHHHcCCHH
Q psy17412 156 RDSPVLYTNRALTLLHL--------QLYDPVLPDCDKALRLDEDNM-----------------KAHLYKARAMHNLGQRE 210 (240)
Q Consensus 156 ~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~~l~~~~~~~-----------------~~~~~la~~~~~~g~~~ 210 (240)
..+++..|.+++.. .-..+|+..++..+...|++. .--..+|+.|.+.|.+-
T Consensus 108 ---dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 108 ---DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ---hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 66677888776653 223467888889999998751 11256788999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 211 EAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 211 ~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
.|+..++.+++..|+.+.....+..+.
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~ 211 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLE 211 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHH
Confidence 999999999999998877666665543
No 171
>PLN03077 Protein ECB2; Provisional
Probab=99.15 E-value=4.5e-09 Score=90.55 Aligned_cols=171 Identities=12% Similarity=0.012 Sum_probs=107.5
Q ss_pred hHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc--CcccHHHHHHHHHHHHHcCC
Q psy17412 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--DEDNMKAHLYKARAMHSLGQ 129 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~ 129 (240)
+-..|.+.|++++|...|+.. +.+...|..+...|.+.|+.++|++.|++..+. .|+. ..+..+-..+.+.|.
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcCh
Confidence 335666677777777777664 345666777777777777777777777776653 3433 334445556677777
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCH
Q psy17412 130 REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQR 209 (240)
Q Consensus 130 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 209 (240)
+++|..+|+...+..+-.+. ...|..+...+.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.
T Consensus 605 v~ea~~~f~~M~~~~gi~P~---------~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPN---------LKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCc---------hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCh
Confidence 77777777776643222111 223667777777777777777776654 23444 44555555566666777
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 210 EEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 210 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+.+....++++++.|++...+..++.++.
T Consensus 674 e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 674 ELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 77777777777777777666666665543
No 172
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.15 E-value=2.8e-10 Score=67.06 Aligned_cols=69 Identities=33% Similarity=0.480 Sum_probs=54.1
Q ss_pred HhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 53 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
..++...++|++|++.+++++..+|+++..+..+|.++...|++.+|...++++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456777888888888888888888888888888888888888888888888888888887776655443
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.14 E-value=3.2e-09 Score=79.44 Aligned_cols=185 Identities=19% Similarity=0.145 Sum_probs=128.4
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHc-cCcCchHHHHHHHHhcCcc----
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHL-QLYDPVLPDCDKALRLDED---- 112 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~---- 112 (240)
..+..+...+.++ +..++++|+++|++++...-.. ..++..+|.+|... |++++|+++|++++.....
T Consensus 73 ~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~ 151 (282)
T PF14938_consen 73 EAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP 151 (282)
T ss_dssp HHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 3455556655555 5559999999999999874322 56888999999998 9999999999999977421
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh
Q psy17412 113 --NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 113 --~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 190 (240)
...++..+|.++..+|+|++|+..|+++....-++... .......++..+.|++..|++..|...+++....+|
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~----~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL----KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT----GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc----chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24577889999999999999999999998865443211 000123467788899999999999999999999988
Q ss_pred hh-----HHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 191 DN-----MKAHLYKARAMH--NLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 191 ~~-----~~~~~~la~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
.. ......+..++- ....+++|+..|....+++|-...+...+
T Consensus 228 ~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~~ 277 (282)
T PF14938_consen 228 SFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLKI 277 (282)
T ss_dssp TSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHHH
Confidence 53 333444444443 35677888888887777765444444333
No 174
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.14 E-value=2.2e-08 Score=72.56 Aligned_cols=173 Identities=31% Similarity=0.338 Sum_probs=97.5
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHH-HHHHccCcCchHHHHHHHHhcCc---ccHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRAL-TLLHLQLYDPVLPDCDKALRLDE---DNMKAH 117 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~ 117 (240)
.+.....+...|......+++..++..+..++...+.........+. ++...|+++.|...+.+++...| ......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 34444555555555555566666666666665555544333333444 55566666666666666555444 233344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPT-RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
...+..+...++++.++..+.+++...+. .... +..++.++...++++.|+..+..++...|.....+
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 239 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEA-----------LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEAL 239 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHH-----------HHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHH
Confidence 44444455555666666666666665555 3333 56666666666666666666666666666544555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
..++..+...|..+++...+.+++...|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 240 YNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 55555555555566666666666666554
No 175
>PLN03077 Protein ECB2; Provisional
Probab=99.13 E-value=7.6e-09 Score=89.15 Aligned_cols=166 Identities=11% Similarity=0.090 Sum_probs=138.4
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC--cccHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ--VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD--EDNMKAHL 118 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 118 (240)
..+...|..+...|...|+.++|+++|++..+. .|+. ..+..+-..+.+.|+.++|..+|+...+.. ..+...|.
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 556778999999999999999999999998874 4554 445556677889999999999999988433 23457889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 198 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 198 (240)
.+..++.+.|++++|.+.+++. ...|+ +.+|..+-..+...|+.+.+....+++++++|++...+..
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m-~~~pd------------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKM-PITPD------------PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHC-CCCCC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Confidence 9999999999999999999875 34454 2337777777788899999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 199 KARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 199 la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
++.+|...|++++|.+..+...+.
T Consensus 697 l~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 697 LCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHc
Confidence 999999999999999998877643
No 176
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=99.11 E-value=5.3e-08 Score=65.87 Aligned_cols=155 Identities=20% Similarity=0.141 Sum_probs=126.8
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHh-cCcccHHHHHHHHHHHHHcCCHHHHH
Q psy17412 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR-LDEDNMKAHLYKARAMHSLGQREEAK 134 (240)
Q Consensus 56 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 134 (240)
....=|.+.......+.++..|.. .-.+.+|.....+|++.+|...|++++. +..+++..+..+++..+..+++..|.
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 334446666666666667776654 4556799999999999999999999884 45677888999999999999999999
Q ss_pred HHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHH
Q psy17412 135 EYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKE 214 (240)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 214 (240)
..+++..+.+|.. ..++....+|.++...|++.+|...|+.++...|+ +.+....+..+..+|+.++|..
T Consensus 145 ~tLe~l~e~~pa~---------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 145 QTLEDLMEYNPAF---------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhhcCCcc---------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 9999999988753 23455888999999999999999999999999987 6778888999999999988887
Q ss_pred HHHHHHH
Q psy17412 215 YIRELVE 221 (240)
Q Consensus 215 ~~~~~~~ 221 (240)
.+..+..
T Consensus 215 q~~~v~d 221 (251)
T COG4700 215 QYVAVVD 221 (251)
T ss_pred HHHHHHH
Confidence 7665553
No 177
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.11 E-value=5.3e-08 Score=70.55 Aligned_cols=178 Identities=29% Similarity=0.279 Sum_probs=152.9
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHH--hcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH-
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIE--QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR- 122 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~- 122 (240)
.......+..+...+++..+...+...+. ..+.....+...+..+...+++..++..+..++...+.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 57778888999999999999999999997 677888899999999999999999999999999988776555666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC---chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-hHHHHHH
Q psy17412 123 AMHSLGQREEAKEYVRQLVEKYPT---RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-NMKAHLY 198 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~ 198 (240)
++...|+++.|...+.+++...|. ... .....+..+...++++.++..+.+++...+. ....+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 207 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAE-----------ALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLN 207 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHH-----------HHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHH
Confidence 899999999999999999887763 222 2666666688889999999999999999999 6899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 199 KARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 199 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
++..+...++++.|...+..++...|.....+...+
T Consensus 208 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 243 (291)
T COG0457 208 LGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLA 243 (291)
T ss_pred hhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHH
Confidence 999999999999999999999999987444444333
No 178
>KOG4555|consensus
Probab=99.10 E-value=1.3e-08 Score=64.51 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=92.8
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc----HHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN----MKAHLYKA 121 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la 121 (240)
...+...|..+...|+.+.|++.|.+++...|..+.+|.+.+..+.-.|+.++|+..+++++++..+. ..++...|
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 45566788899999999999999999999999999999999999999999999999999999987443 45789999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCch
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRR 148 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~ 148 (240)
.+|..+|+.+.|...|+.+-++.....
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 999999999999999999988876643
No 179
>KOG4642|consensus
Probab=99.09 E-value=6.9e-10 Score=77.52 Aligned_cols=99 Identities=32% Similarity=0.494 Sum_probs=93.0
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 125 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 125 (240)
+.-+-..|+.++....|+.|+..|.+++..+|..+..|.+.+.||++.++++.+.....+++++.|+.+..++.+|....
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 44556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q psy17412 126 SLGQREEAKEYVRQLVEKY 144 (240)
Q Consensus 126 ~~~~~~~A~~~~~~a~~~~ 144 (240)
....|++|+..+.++..+.
T Consensus 90 ~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred hhccccHHHHHHHHHHHHH
Confidence 9999999999999997654
No 180
>KOG4340|consensus
Probab=99.08 E-value=1.4e-08 Score=73.62 Aligned_cols=168 Identities=15% Similarity=0.081 Sum_probs=135.6
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHh----------
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR---------- 108 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---------- 108 (240)
....|.+-..+..+|.+|+...+|..|..+|++.-...|.........+...++.+.+..|+........
T Consensus 37 ~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lq 116 (459)
T KOG4340|consen 37 LERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQ 116 (459)
T ss_pred HhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHH
Confidence 3456667778889999999999999999999999999999888888888888888888887766544322
Q ss_pred ------c--------------Cc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHH
Q psy17412 109 ------L--------------DE--DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRA 166 (240)
Q Consensus 109 ------~--------------~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 166 (240)
. -| +......+.|.+.++.|+++.|++-|+.+++...-.+.. -++++
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll-----------AYniA 185 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL-----------AYNLA 185 (459)
T ss_pred HHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh-----------HHHHH
Confidence 1 12 345677888999999999999999999999998887776 89999
Q ss_pred HHHHHhcccCchhhHHHHHhhc----Chhh-------------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 167 LTLLHLQLYDPVLPDCDKALRL----DEDN-------------------------MKAHLYKARAMHNLGQREEAKEYIR 217 (240)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~~l~~----~~~~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~ 217 (240)
.++++.|+++.|+++....++. .|.. ..++...+-++++.|+++.|.+.+.
T Consensus 186 LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 186 LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 9999999999999888776653 3321 3455667788999999998877653
No 181
>KOG3081|consensus
Probab=99.05 E-value=2.3e-07 Score=66.28 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHH
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (240)
....-|.++..-|++++|+...... .+.++...-..++.++.+++-|...+++..+++.+..
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t------------- 171 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT------------- 171 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH-------------
Confidence 3444567778888888888777663 3345555566677777777777777777777665432
Q ss_pred HHHHHHHHHH----hcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 162 YTNRALTLLH----LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 162 ~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
+..+|..+.+ .+++.+|.-+|+..-+..|-.+.....++.+.+.+|++++|...++.++..++++|+...++
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 2223332222 13344555555554444444444555555555555555555555555555555555544443
No 182
>KOG3081|consensus
Probab=99.04 E-value=2.8e-07 Score=65.86 Aligned_cols=167 Identities=19% Similarity=0.183 Sum_probs=133.0
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
+.-....-|.++...|++++|.+..... .+.++...-..++.++.+.+-|...+++..+.+.+. ....+|..+
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~aw 179 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAW 179 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHH
Confidence 3345556678899999999999988773 334566666788999999999999999999887543 344455544
Q ss_pred HHc----CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 125 HSL----GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 125 ~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
... +++.+|.-.|+..-+..|..+.. ....+.|.+.+|+|++|...++.++..++++++++.++.
T Consensus 180 v~la~ggek~qdAfyifeE~s~k~~~T~~l-----------lnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSEKTPPTPLL-----------LNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhcccCCChHH-----------HccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 432 46889999999988866666655 999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHhCCCcHHH
Q psy17412 201 RAMHNLGQREEAKE-YIRELVEKYPTRRKL 229 (240)
Q Consensus 201 ~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~ 229 (240)
.+...+|...++.. ++.+....+|.++-+
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 99999999877765 556666777877654
No 183
>KOG1915|consensus
Probab=99.01 E-value=1e-07 Score=73.41 Aligned_cols=174 Identities=18% Similarity=0.124 Sum_probs=133.1
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH---------HHHHHHH-HHHHccCcCchHHHHHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV---------LYTNRAL-TLLHLQLYDPVLPDCDKAL 107 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~-~~~~~~~~~~A~~~~~~~~ 107 (240)
....+|.+-++|+..-...-..|+-+.-.+.|++|+...|-... .|.+.+. .-....+.+.+.+.|+.++
T Consensus 314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45568888899998888888889999999999999998775422 2332221 1134678899999999999
Q ss_pred hcCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHH
Q psy17412 108 RLDED----NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD 183 (240)
Q Consensus 108 ~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (240)
.+-|. .+..|...|....++.+...|.+.+-.++...|.+.. .-....+-.++++++.+...|+
T Consensus 394 ~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl------------Fk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 394 DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL------------FKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH------------HHHHHHHHHHHhhHHHHHHHHH
Confidence 99885 4678888899999999999999999999999998543 3444455566777777888888
Q ss_pred HHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 184 KALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 184 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
+-++..|.+..+|...|.+-..+|+.+.|...|+-+++..
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 8888888777777777777777777777777777666543
No 184
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.98 E-value=1.8e-09 Score=64.46 Aligned_cols=65 Identities=26% Similarity=0.327 Sum_probs=31.4
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc-------CCChHHHHHHHHHHHHccCcCchHHHHHHHHh
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQV-------RDSPVLYTNRALTLLHLQLYDPVLPDCDKALR 108 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 108 (240)
..+.++..+|.++...|+|++|+.+|+++++.. |....++.++|.++...|++++|+++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555555555555555431 11133444444444444444444444444443
No 185
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.96 E-value=3.2e-09 Score=81.66 Aligned_cols=70 Identities=23% Similarity=0.164 Sum_probs=61.4
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHH---HHHHHHHHHHccCcCchHHHHHHHHhcC
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVL---YTNRALTLLHLQLYDPVLPDCDKALRLD 110 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~~~~~~ 110 (240)
.+|+.+..++++|..++..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 578888999999999999999999999999999999988754 8899999999999999999999998873
No 186
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.96 E-value=1.4e-09 Score=64.95 Aligned_cols=68 Identities=28% Similarity=0.362 Sum_probs=58.2
Q ss_pred CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy17412 77 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-------EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKY 144 (240)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 144 (240)
|+...++.++|.+|...|++++|+.+|++++++. |....++.++|.++..+|++++|+.++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4456789999999999999999999999999652 2336689999999999999999999999998763
No 187
>KOG2796|consensus
Probab=98.94 E-value=3.3e-08 Score=70.43 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchH
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLD-EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (240)
+.+.++.++.-.|.|.-....+.+.++.+ |..+.....+|.+.++.|+.+.|..++++.-+.... ++.......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k-----L~~~q~~~~ 253 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK-----LDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh-----hhccchhHH
Confidence 56667888888999999999999999988 566778888999999999999999999976544332 223333445
Q ss_pred HHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHhh
Q psy17412 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR---RKLVENYTQAF 237 (240)
Q Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~ 237 (240)
+..+.+.++.-.+++..|...+.+++..+|.++.+..+.|.|.+.+|+..+|++.++.++...|.. .....++.-++
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 578888888889999999999999999999999999999999999999999999999999999874 33444444443
No 188
>KOG0545|consensus
Probab=98.93 E-value=4.8e-08 Score=68.87 Aligned_cols=117 Identities=24% Similarity=0.289 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEK--------YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
..++...|+-++..|+|.+|...|..|+.. .|..+.. +........++.|++.|+...|+|-++++....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW-~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW-LELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH-HHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 456788899999999999999999988753 4555554 5565666678999999999999999999999999
Q ss_pred hhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 186 LRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 186 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
+..+|++..+++..|.+....-+.++|...|.++++++|.-..+..
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 9999999999999999999999999999999999999997655443
No 189
>KOG1070|consensus
Probab=98.91 E-value=2.5e-07 Score=79.45 Aligned_cols=186 Identities=15% Similarity=0.124 Sum_probs=149.5
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh-cCCC----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ-VRDS----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 113 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 113 (240)
....|..+-.|...-...++.++.++|.+..++|+.. ++.. ..+|..+-.....-|.-+.-.+.|++|-+.. +.
T Consensus 1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~ 1529 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DA 1529 (1710)
T ss_pred HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-ch
Confidence 3456777777877777778888899999999988875 3322 2344444344444455555567777776654 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh--
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-- 191 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-- 191 (240)
..++..|..+|...+++++|.++++..++...+.... |..+|..+++.++-++|...+.+|++.-|.
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~v-----------W~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKV-----------WIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhH-----------HHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 4578888999999999999999999999988866666 999999999999999999999999999997
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 192 NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+.......|.+.++.|+.+.+...|+..+..+|...+.|.-|.+.
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence 788899999999999999999999999999999999999888765
No 190
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=1.8e-08 Score=69.71 Aligned_cols=125 Identities=19% Similarity=0.110 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCch
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (240)
+..++.+|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+|+.|.+.|...++++|.....
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya--------- 135 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA--------- 135 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH---------
Confidence 56788899999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYI 216 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 216 (240)
..+.|..++-.|+|.-|.+.+.+-.+.+|+++---..+-..-. .-++.+|..-+
T Consensus 136 --~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~-k~dP~~A~tnL 189 (297)
T COG4785 136 --HLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ-KLDPKQAKTNL 189 (297)
T ss_pred --HhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh-hCCHHHHHHHH
Confidence 9999999999999999999999999999987643332222222 23455555443
No 191
>KOG1941|consensus
Probab=98.90 E-value=9.3e-08 Score=71.21 Aligned_cols=182 Identities=13% Similarity=0.108 Sum_probs=139.5
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc--
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN-- 113 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-- 113 (240)
......+++.+++..+....++.+++.+-+..+..-... ..+...+|..+..++.++++++.|+++++...++
T Consensus 78 ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D 157 (518)
T KOG1941|consen 78 DSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD 157 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence 344566778888888888888888888877777653222 3466679999999999999999999999775433
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC
Q psy17412 114 ----MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 189 (240)
Q Consensus 114 ----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 189 (240)
..++..+|..+....++++|..+..++.++....... -.......-..+.++..+..+|+...|.++.+.+.++.
T Consensus 158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 2478889999999999999999999998875432100 00000112347788889999999999999999997763
Q ss_pred ------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 190 ------EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 190 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
+.....+..+|.+|...|+.+.|..-|+.+...-
T Consensus 237 l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 237 LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 4456778899999999999999999999998653
No 192
>KOG2796|consensus
Probab=98.88 E-value=2.7e-07 Score=65.90 Aligned_cols=137 Identities=13% Similarity=0.155 Sum_probs=119.2
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC------cccHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQV-RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD------EDNMKAH 117 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~ 117 (240)
.....+.+..++.-.|.|.-++..+.+.++.+ |..+.....+|.+.++.|+.+.|..+|++.-+.. .....+.
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 34556677788888999999999999999998 6678888899999999999999999999654322 2345577
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
.+.+.++.-.+++.+|...+.+++..+|.++.. .++.|.|.+..|+..+|++.++.++...|..
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a-----------~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA-----------NNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCCchhh-----------hchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 888889999999999999999999999998888 9999999999999999999999999999973
No 193
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.88 E-value=2e-08 Score=77.41 Aligned_cols=70 Identities=19% Similarity=0.164 Sum_probs=66.9
Q ss_pred hcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy17412 75 QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA---HLYKARAMHSLGQREEAKEYVRQLVEKY 144 (240)
Q Consensus 75 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~a~~~~ 144 (240)
.+|+++..++++|.+++..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999854 9999999999999999999999999984
No 194
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=4.8e-07 Score=78.77 Aligned_cols=176 Identities=14% Similarity=0.075 Sum_probs=134.6
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc------c
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED------N 113 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~ 113 (240)
.......+|..+...|++++|...+++++...+.. ..+...+|.++...|++++|...+.+++..... .
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 34455567888899999999999999999864443 235677899999999999999999999865321 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh---
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE--- 190 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--- 190 (240)
..++..+|.++...|++++|...+++++......... ..+.....+..+|.++...|++++|...+.+++....
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 607 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE---QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ 607 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc---cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC
Confidence 3466788999999999999999999998864331100 0000122356788899999999999999999877532
Q ss_pred --hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 191 --DNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 191 --~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
.....+..++.++...|++++|...+.++....
T Consensus 608 ~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 608 PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 235566778999999999999999999987653
No 195
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.85 E-value=6.7e-07 Score=77.92 Aligned_cols=181 Identities=16% Similarity=0.151 Sum_probs=136.5
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC--------ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc-----c
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRD--------SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE-----D 112 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~ 112 (240)
...+..+|.++...|++++|...+.+++..... ....+..+|.++...|++++|...+.+++.... .
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 456678899999999999999999999886322 123455788899999999999999999876532 2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch---HH--H---------------------HHhc--c--Cc----
Q psy17412 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR---KL--A---------------------IEQV--R--DS---- 158 (240)
Q Consensus 113 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~--~---------------------~~~~--~--~~---- 158 (240)
...++..+|.++...|++++|...+.++..+.+... .. . +... + ..
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 345667789999999999999999999876533211 00 0 0000 0 00
Q ss_pred hHHHHHHHHHHHHhcccCchhhHHHHHhhcCh------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 159 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDE------DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
...+..++.++...|++++|...+.+++.... ....++..+|.++...|+.++|...+.+++......
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 11245788899999999999999999987632 235678889999999999999999999999887544
No 196
>KOG0376|consensus
Probab=98.83 E-value=8e-09 Score=79.34 Aligned_cols=103 Identities=26% Similarity=0.388 Sum_probs=97.7
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHc
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSL 127 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 127 (240)
..-..+..++..+.|+.|+..|.++++++|+.+..+.+++..+.+.+++..|+..+.++++.+|....+|+..|.+...+
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 34456778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCchHH
Q psy17412 128 GQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 128 ~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
+++.+|...|+....+.|+++.+
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHH
Confidence 99999999999999999999877
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.82 E-value=6.7e-07 Score=60.66 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=112.2
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc--cHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIE-QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED--NMKAHLYK 120 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l 120 (240)
......+.+|+.+...|++.+|...|++++. ...+++..+..++...+..+++..|...+++..+.+|. .++....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 3456677899999999999999999999987 46778889999999999999999999999999998874 46778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHh
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL 186 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 186 (240)
|.++...|++.+|...|+.++...|. +......+..+.++|+.++|..-+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg------------~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPG------------PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCC------------HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 99999999999999999999999998 3336777888889998887766554443
No 198
>KOG1586|consensus
Probab=98.81 E-value=1.2e-06 Score=61.50 Aligned_cols=179 Identities=17% Similarity=0.093 Sum_probs=130.5
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccH----
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVR------DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM---- 114 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---- 114 (240)
-++.+..-|+.|--.++|+.|-..|.++-+..- +....|...+.||.+ .+..+|+.++++++++..+-.
T Consensus 33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~ 111 (288)
T KOG1586|consen 33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTM 111 (288)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHH
Confidence 456667777788888888888888888766521 124566666677655 499999999999998875433
Q ss_pred --HHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 115 --KAHLYKARAMHSL-GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 115 --~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
..+..+|.+|... .++++|+.+|+++-+........ ......+...+..-..+++|.+|+..|+++....-+
T Consensus 112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~-----ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV-----SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455788888765 89999999999998766543322 111234677777788899999999999998765443
Q ss_pred h-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q psy17412 192 N-------MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKL 229 (240)
Q Consensus 192 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 229 (240)
+ -+.++.-|.|++-.++.-.+...+++..+++|...+.
T Consensus 187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 3 2234556777777789888999999999999976543
No 199
>KOG4642|consensus
Probab=98.80 E-value=2.3e-08 Score=70.10 Aligned_cols=94 Identities=26% Similarity=0.351 Sum_probs=87.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
..-|..++.-.+|..|+.+|.+++.++|..+.. +.+.+.|+++.++++.+.....++++++|+.+...+
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y-----------~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~ 82 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASY-----------YTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHY 82 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchh-----------hhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHH
Confidence 345667777789999999999999999998777 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
.+|.+......+++|+..+.++..+
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999999654
No 200
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.80 E-value=3.5e-07 Score=68.35 Aligned_cols=138 Identities=10% Similarity=0.051 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchH
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS-LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (240)
+|..+.....+.+..+.|...|.++.+..+....+|...|.+.+. .++.+.|...|+.+++..|.+...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~---------- 72 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF---------- 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH----------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH----------
Confidence 455666666666667777777777775555566777777777666 445555777777777777777666
Q ss_pred HHHHHHHHHHHhcccCchhhHHHHHhhcChhhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q psy17412 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM---KAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLV 230 (240)
Q Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 230 (240)
|......+...++.+.|...|++++..-|... .+|......-...|+.+...+..+++.+..|++....
T Consensus 73 -~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 73 -WLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp -HHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred -HHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 77777777777777777777777776655433 5677777777778888888888888887777755443
No 201
>KOG4555|consensus
Probab=98.79 E-value=6.1e-07 Score=57.16 Aligned_cols=92 Identities=27% Similarity=0.278 Sum_probs=46.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh----hHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED----NMKA 195 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~ 195 (240)
.|......|+.+.|++.|.+++.+.|..+.. |++.+..+.-.|+.++|+..+++++++... -..+
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSa-----------yNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa 117 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASA-----------YNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQA 117 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHh-----------hccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHH
Confidence 3444444555555555555555555554444 555555555555555555555555544321 1234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
+...|.+|..+|+-+.|...|+.+-++
T Consensus 118 ~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 118 FVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 445555555555555555555554444
No 202
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.75 E-value=2.4e-07 Score=62.52 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcc----------cCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 130 REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL----------YDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 130 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
|+.|.+.++.....+|.+.+. +.+=|.++..+.+ +++|+.-|+.++.++|+..+++..+
T Consensus 7 FE~ark~aea~y~~nP~Dadn-----------L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~l 75 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADN-----------LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCL 75 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHH-----------HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHH-----------HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 678899999999999998877 7777777666533 5678888899999999999999999
Q ss_pred HHHHHHcCC-----------HHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 200 ARAMHNLGQ-----------REEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 200 a~~~~~~g~-----------~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
|.++..++. +++|..+|+++...+|++...+..+..
T Consensus 76 GnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 76 GNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999987664 678999999999999999887776654
No 203
>KOG0545|consensus
Probab=98.74 E-value=2.3e-07 Score=65.54 Aligned_cols=107 Identities=27% Similarity=0.378 Sum_probs=95.1
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh--------cCCC----------hHHHHHHHHHHHHccCcCchHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQ--------VRDS----------PVLYTNRALTLLHLQLYDPVLPDCDK 105 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~ 105 (240)
.....+...|+-++..|+|.+|...|..|+.. .|.. ...+.+...|+...|+|-++++....
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 45678889999999999999999999999865 3433 34678899999999999999999999
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 106 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
.+...|.+..+++..|.+....-+.++|...+.++++++|.-...
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999999999975433
No 204
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.73 E-value=4.8e-08 Score=51.03 Aligned_cols=43 Identities=30% Similarity=0.338 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
.++..+|.++..+|++++|+..|+++++.+|+++.++..++++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 4678888888889999999999998888888888888888763
No 205
>KOG0376|consensus
Probab=98.72 E-value=2.9e-08 Score=76.36 Aligned_cols=106 Identities=21% Similarity=0.236 Sum_probs=77.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 198 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 198 (240)
.-+...+.-+.|+.|+..|.++++++|+.... +.+.+..+.+.+++..|+..+.++++.+|....+|+.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~-----------~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~r 77 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIY-----------FANRALAHLKVESFGGALHDALKAIELDPTYIKAYVR 77 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceee-----------echhhhhheeechhhhHHHHHHhhhhcCchhhheeee
Confidence 34555566677777777777777777776665 7777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 199 KARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 199 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
.|.+.+.++++.+|+..|+......|+++.+...+..
T Consensus 78 rg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 78 RGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred ccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 7777777777777777777777777777776665544
No 206
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.72 E-value=4e-07 Score=61.49 Aligned_cols=89 Identities=22% Similarity=0.277 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCc----------CchHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--
Q psy17412 62 YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLY----------DPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQ-- 129 (240)
Q Consensus 62 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-- 129 (240)
|+.|.+.++.....+|.++..+++-|.++..+.++ ++|+.-|+.++.++|+..++++.+|.++..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 45666666666666777766666666666554333 345555566666677777777777776655533
Q ss_pred ---------HHHHHHHHHHHHHcCCCchHH
Q psy17412 130 ---------REEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 130 ---------~~~A~~~~~~a~~~~~~~~~~ 150 (240)
|++|..+|+++...+|++...
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 677888888888889987654
No 207
>KOG1585|consensus
Probab=98.69 E-value=4.5e-06 Score=59.17 Aligned_cols=187 Identities=16% Similarity=0.073 Sum_probs=131.3
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHccCcCchHHHHHHHHhcC-----ccc
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHLQLYDPVLPDCDKALRLD-----EDN 113 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~ 113 (240)
.+..+..-+..+...++|++|...+.++.+...++ ...+-..+........+.++..+++++..+. |+.
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 45566677778888899999999999999776554 3345556667777889999999999998764 444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc-----
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL----- 188 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----- 188 (240)
...-...+--....-++++|+..|++++.+..++... ....+.+...+.++.+..++++|-..+.+-...
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~-----~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~ 184 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRD-----QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD 184 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchH-----HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh
Confidence 4444445555667789999999999998876554322 122455777888999999999988777765332
Q ss_pred -ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHh
Q psy17412 189 -DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY----PTRRKLVENYTQA 236 (240)
Q Consensus 189 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~ 236 (240)
.++....+.....++....+|..|..+++...+.. |++.....+|-..
T Consensus 185 ~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 185 AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 23334455666666777789999999999876653 3333444444433
No 208
>KOG0551|consensus
Probab=98.69 E-value=1.9e-07 Score=68.74 Aligned_cols=107 Identities=29% Similarity=0.478 Sum_probs=95.7
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
...+..+-.-|+.+++.++|..|+..|.+.++..-.+ ..+|.++|.|.+.+|+|..|+..+.+++.++|.+..+++
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~ 157 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYI 157 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhh
Confidence 3478888899999999999999999999999975433 567889999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRK 149 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 149 (240)
.-|.|++.+.++.+|..+.+..+.++.+...
T Consensus 158 R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 9999999999999999999988877655433
No 209
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.4e-06 Score=62.27 Aligned_cols=162 Identities=11% Similarity=0.023 Sum_probs=112.5
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc-HHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN-MKAHLYKARA 123 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~ 123 (240)
..+.-+..+......|++.+|...|..++...|++..+...++.|+...|+.+.|...+...-...... ..........
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 344556678888999999999999999999999999999999999999999999988776643222211 1110011122
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh--hHHHHHHHHH
Q psy17412 124 MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED--NMKAHLYKAR 201 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~ 201 (240)
+.+.....+. ..+++.+..+|++... .+.+|..+...|+.+.|.+.+-..++.+.+ +..+...+-.
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~a-----------a~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle 280 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEA-----------ALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLE 280 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 2222222221 2344555667776666 999999999999999999999888887654 4556666666
Q ss_pred HHHHcCCHHHHHHHHHH
Q psy17412 202 AMHNLGQREEAKEYIRE 218 (240)
Q Consensus 202 ~~~~~g~~~~A~~~~~~ 218 (240)
++...|.-+.+...+++
T Consensus 281 ~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 281 LFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHhcCCCCHHHHHHHH
Confidence 77666655555554444
No 210
>KOG1941|consensus
Probab=98.67 E-value=1.7e-06 Score=64.78 Aligned_cols=175 Identities=17% Similarity=0.073 Sum_probs=133.4
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc----CCC--hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc----
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQV----RDS--PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---- 113 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---- 113 (240)
..-..+-.+..+....|.|++++.+--..++.. ... ..++.+++..+....++.+++.+.+..+.+-...
T Consensus 41 ~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~ 120 (518)
T KOG1941|consen 41 GRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQL 120 (518)
T ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccc
Confidence 344445556667778888888776654444432 111 4578899999999999999999998888764322
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-
Q psy17412 114 -MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED- 191 (240)
Q Consensus 114 -~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~- 191 (240)
..+...+|..+..++.++++++.|+.+++...++.+. --.-.++..+|..+....++++|+-+..++.++-..
T Consensus 121 ~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~-----~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~ 195 (518)
T KOG1941|consen 121 GGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA-----MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY 195 (518)
T ss_pred cchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc-----eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence 2567779999999999999999999999986654332 112245889999999999999999999998876432
Q ss_pred ---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 192 ---------NMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 192 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
..-+++.++..+..+|....|.++.+++.++.
T Consensus 196 ~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 196 GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 24467889999999999999999999988764
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.65 E-value=4.7e-05 Score=58.41 Aligned_cols=176 Identities=14% Similarity=-0.019 Sum_probs=127.5
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh----cCCChHHHHHHHHHHHH---ccCcCchHHHHHHH-HhcCcccHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQ----VRDSPVLYTNRALTLLH---LQLYDPVLPDCDKA-LRLDEDNMKA 116 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~-~~~~~~~~~~ 116 (240)
.++...++-..|....+|+.-+++.+..-.. .++.+.+....|.++.+ .|+.++|+..+..+ ....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3455566666788889999999988887665 45567788889999988 89999999999994 4556778889
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHh-
Q psy17412 117 HLYKARAMHSL---------GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL- 186 (240)
Q Consensus 117 ~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l- 186 (240)
+..+|.+|-.+ ...++|+..|.++.++.|+... =.|++.++.-.|.-.+....+.+..
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~------------GIN~AtLL~~~g~~~~~~~el~~i~~ 287 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS------------GINAATLLMLAGHDFETSEELRKIGV 287 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc------------hHHHHHHHHHcCCcccchHHHHHHHH
Confidence 99999887432 3578999999999999976433 3566666666665433332222222
Q ss_pred hc-----------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 187 RL-----------DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 187 ~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
++ .-.+-.....++.+..-.|++++|...++++++..|........
T Consensus 288 ~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St 344 (374)
T PF13281_consen 288 KLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELEST 344 (374)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHH
Confidence 11 11234455667788889999999999999999998877654433
No 212
>KOG2047|consensus
Probab=98.62 E-value=6.2e-06 Score=66.12 Aligned_cols=181 Identities=13% Similarity=0.076 Sum_probs=117.4
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh-cCCC-----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCc--
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ-VRDS-----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDE-- 111 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-- 111 (240)
.++|.+...|... +-+..|+..+-+..|..|+.. +|.- ...|...|..|...|+.+.|...|+++....-
T Consensus 343 RQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred hcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 3466666666654 344578899999999999875 5542 56899999999999999999999999998763
Q ss_pred --ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH--------HHHhccCchHHHHHHHHHHHHhcccCchhhH
Q psy17412 112 --DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL--------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 181 (240)
Q Consensus 112 --~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 181 (240)
+-..+|...|..-....+++.|...++++... |..+.. .......+..+|..++......|-++.....
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 23578999999999999999999999999765 322211 1122223334444444444444555555555
Q ss_pred HHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 182 CDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 182 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
|++.+.+.--.+.+..+.|..+....-++++.+.|++.+.++
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 555554444444444444444444444444444444444443
No 213
>KOG0551|consensus
Probab=98.59 E-value=5.4e-07 Score=66.36 Aligned_cols=102 Identities=26% Similarity=0.293 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
-+..-|.-|+..++|..|+..|.++++..-.+++. ++.+|.|.|.+....|+|..|+..+.+++..+|++..+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl-------navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka 155 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL-------NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKA 155 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 34445556666666666666666666654444433 23446666666666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
++.-|.+++.+.++++|..+++..+..+.
T Consensus 156 ~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 156 YIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 66666666666666666666655555443
No 214
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.58 E-value=2.1e-06 Score=64.20 Aligned_cols=95 Identities=14% Similarity=0.046 Sum_probs=41.0
Q ss_pred HhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc-cCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q psy17412 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL-QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQ 129 (240)
Q Consensus 51 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 129 (240)
.......+.+..+.|...|.+|.+..+....+|...|.+.+.. ++.+.|...|+.+++..|.+...|......+...|+
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d 85 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND 85 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc
Confidence 3333334444444444445444433333344444444443332 223334455555554444444444444444444455
Q ss_pred HHHHHHHHHHHHHcCC
Q psy17412 130 REEAKEYVRQLVEKYP 145 (240)
Q Consensus 130 ~~~A~~~~~~a~~~~~ 145 (240)
.+.|...|++++..-+
T Consensus 86 ~~~aR~lfer~i~~l~ 101 (280)
T PF05843_consen 86 INNARALFERAISSLP 101 (280)
T ss_dssp HHHHHHHHHHHCCTSS
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5555555555444433
No 215
>KOG2053|consensus
Probab=98.58 E-value=2.8e-06 Score=70.20 Aligned_cols=125 Identities=17% Similarity=0.196 Sum_probs=95.4
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Q psy17412 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKE 135 (240)
Q Consensus 56 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 135 (240)
....+++.+|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 34667888888888888888888888888888888888999888877777777777777778888888888899999999
Q ss_pred HHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 136 YVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
+|++++..+|. ... ...+-.+|.+.+.|.+-.+.--+..+..|++
T Consensus 99 ~Ye~~~~~~P~-eel-----------l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~ 143 (932)
T KOG2053|consen 99 LYERANQKYPS-EEL-----------LYHLFMAYVREKSYKKQQKAALQLYKNFPKR 143 (932)
T ss_pred HHHHHHhhCCc-HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999888888 444 5666666666666655444444444455544
No 216
>KOG2053|consensus
Probab=98.58 E-value=5.4e-05 Score=62.98 Aligned_cols=186 Identities=14% Similarity=0.028 Sum_probs=135.5
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|....+....|..+.+.|+.++|..+++..-...+++...+..+-.||..+|++++|...|++++..+|. ....+
T Consensus 36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~ 114 (932)
T KOG2053|consen 36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLY 114 (932)
T ss_pred HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHH
Confidence 45677788888889999999999999998888877778888888899999999999999999999999999999 78888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH---------------------------------HHHhc-c--CchHHH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKL---------------------------------AIEQV-R--DSPVLY 162 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------------------~~~~~-~--~~~~~~ 162 (240)
.+-.+|.+.+.|.+-.+.--+..+..|+.+.. .+... + ...++
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~- 193 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI- 193 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH-
Confidence 88888888888877666655666677766544 00000 0 00011
Q ss_pred HHHHHHHHHhcccCchhhHHHHH-hhc-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 163 TNRALTLLHLQLYDPVLPDCDKA-LRL-DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~-l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
...-.++...|++++|...+..- .+. .+.+...-......+...+++.+-.+...+++..++++
T Consensus 194 ~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 194 ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 11123344567788888777332 222 33334444455667778889999888888888888887
No 217
>KOG2610|consensus
Probab=98.57 E-value=1.1e-05 Score=59.90 Aligned_cols=161 Identities=11% Similarity=-0.064 Sum_probs=130.7
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc-Cccc---HHHHHHHHHHH
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL-DEDN---MKAHLYKARAM 124 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~la~~~ 124 (240)
....+......|++.+|....++.++..|.+..++..--..++..|+...-...+++.+-. +++. .-+.-.++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3344556677899999999999999999999888888888999999999999999999866 5544 44555677788
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh----HHHHHHHH
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN----MKAHLYKA 200 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la 200 (240)
...|-|++|.+.-+++++++|.+.-. ...++.++.-.+++.++.+...+.-...... ..-|..-+
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa-----------~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A 254 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWA-----------SHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA 254 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHH-----------HHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH
Confidence 89999999999999999999998766 7788888888999999999887754433221 22355677
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q psy17412 201 RAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~ 220 (240)
.+++.-+.++.|++.|.+-+
T Consensus 255 l~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HhhhcccchhHHHHHHHHHH
Confidence 88888899999999997644
No 218
>KOG2047|consensus
Probab=98.55 E-value=2.1e-05 Score=63.16 Aligned_cols=170 Identities=14% Similarity=0.131 Sum_probs=132.8
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc---------
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRD----SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE--------- 111 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------- 111 (240)
-...|...|..|...|+.+.|...|+++.+..=. -..+|..-|..-+...+++.|+...+++...-.
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 4567889999999999999999999999887422 267899999999999999999999999874421
Q ss_pred ---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHH
Q psy17412 112 ---------DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 182 (240)
Q Consensus 112 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 182 (240)
.+..+|...+......|-++.....|++.+++.--.|.. ..|.|..+....-++++.+.|
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi-----------i~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI-----------IINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH-----------HHHHHHHHHhhHHHHHHHHHH
Confidence 124578888889999999999999999999987776666 888888888888888999999
Q ss_pred HHHhhcC--hhhHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 183 DKALRLD--EDNMKAHLYKARA---MHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 183 ~~~l~~~--~~~~~~~~~la~~---~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
++.+.+. |...++|...-.. -+.--..+.|...|++++..-|.
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 9888875 4445555432222 22234667888888888887763
No 219
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.54 E-value=2.6e-07 Score=48.24 Aligned_cols=40 Identities=20% Similarity=0.128 Sum_probs=24.1
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRA 87 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 87 (240)
.+..+|..+...|++++|++.|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555566666666666666666666666666666655554
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.50 E-value=8.7e-05 Score=56.43 Aligned_cols=185 Identities=16% Similarity=0.124 Sum_probs=128.7
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
....+..+..-++...-.|+++.|.+-|+..+. +|.. ...+..+-.--...|..+.|..+-..+....|.-+.++...
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~At 194 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARAT 194 (531)
T ss_pred ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHH
Confidence 444566777778888899999999999987654 3332 12222232333568999999999999999999988888877
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---CCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKY---PTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
-...+..|+|+.|++..+...... ++..+- ....++...+..... -+...|...-..++++.|+....-.
T Consensus 195 Le~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR------~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav 267 (531)
T COG3898 195 LEARCAAGDWDGALKLVDAQRAAKVIEKDVAER------SRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAV 267 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhhchhhHHH------HHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHH
Confidence 778889999999999998765432 221111 011122222222222 3466778888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
.-+..++..|+..++-..++.+.+..| +|+++..+.+
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia~lY~~ 304 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEP-HPDIALLYVR 304 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCC-ChHHHHHHHH
Confidence 888888888888888888888888877 4555555443
No 221
>KOG1308|consensus
Probab=98.49 E-value=1.1e-07 Score=70.24 Aligned_cols=101 Identities=26% Similarity=0.392 Sum_probs=92.8
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 125 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 125 (240)
+.-....+...+..|.+++|++.|..++.++|.....+..++.+++++++...|+..+..++.++|+...-+-..|....
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 33445566777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCC
Q psy17412 126 SLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 126 ~~~~~~~A~~~~~~a~~~~~~ 146 (240)
.+|+|++|...+..+.+++-+
T Consensus 194 llg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred HhhchHHHHHHHHHHHhcccc
Confidence 999999999999999987644
No 222
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.48 E-value=1.5e-05 Score=62.32 Aligned_cols=172 Identities=21% Similarity=0.127 Sum_probs=122.7
Q ss_pred HhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc------------------
Q psy17412 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED------------------ 112 (240)
Q Consensus 51 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------------ 112 (240)
.+.....+..+.+.-++.-.+|++++|+.+.+|..++.-. .....+|..+++++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 3445566788999999999999999999998887776521 22345666666666543210
Q ss_pred -------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 113 -------NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 113 -------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
...+...+|.|..++|+.++|++.++..++..|.... ..++.++..++...+.|.++...+.+-
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~---------l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN---------LNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch---------hhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 1234567999999999999999999999998876322 235899999999999999999988886
Q ss_pred hhc-ChhhHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 186 LRL-DEDNMKAHLYKARAMHN-LGQ---------------REEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 186 l~~-~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
-+. -|+.+...+..+.+..+ .|+ -..|.+.+.++++.+|.-+......
T Consensus 322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 433 25555555554444322 222 1347788999999999887765443
No 223
>KOG1586|consensus
Probab=98.46 E-value=5e-05 Score=53.66 Aligned_cols=144 Identities=17% Similarity=0.072 Sum_probs=106.1
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHc-cCcCchHHHHHHHHhcCcc-----
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV------LYTNRALTLLHL-QLYDPVLPDCDKALRLDED----- 112 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~----- 112 (240)
-+..+...+ -.++.++..+|++.+++++++..+... .+..+|.+|..- .++++|+.+|+++-+....
T Consensus 73 aat~YveA~-~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 73 AATTYVEAA-NCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred HHHHHHHHH-HHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 344444444 445666999999999999999876544 445788888765 8999999999999765432
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCc-hHHHHHHHHHHHHhcccCchhhHHHHHhhcCh
Q psy17412 113 -NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDS-PVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 113 -~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 190 (240)
.-.++...+..-...++|.+|+..|++.....-+++-. ... -+.++.-|.|++-..+.-.+...+++..+.+|
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL-----Kys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL-----KYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-----HhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 12467777888889999999999999998866555432 001 12356667888887888888889999999999
Q ss_pred hhHH
Q psy17412 191 DNMK 194 (240)
Q Consensus 191 ~~~~ 194 (240)
...+
T Consensus 227 ~F~d 230 (288)
T KOG1586|consen 227 AFTD 230 (288)
T ss_pred cccc
Confidence 7543
No 224
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.46 E-value=2e-07 Score=45.51 Aligned_cols=32 Identities=31% Similarity=0.279 Sum_probs=18.1
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q psy17412 103 CDKALRLDEDNMKAHLYKARAMHSLGQREEAK 134 (240)
Q Consensus 103 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 134 (240)
|+++++++|+++.+|+++|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
No 225
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.46 E-value=1.9e-07 Score=45.58 Aligned_cols=33 Identities=33% Similarity=0.267 Sum_probs=31.0
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHH
Q psy17412 181 DCDKALRLDEDNMKAHLYKARAMHNLGQREEAK 213 (240)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 213 (240)
+|+++++++|+++.+|+++|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999986
No 226
>KOG2610|consensus
Probab=98.45 E-value=1.8e-05 Score=58.82 Aligned_cols=127 Identities=19% Similarity=0.173 Sum_probs=109.5
Q ss_pred HHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCchHHHHHhccCchHHHH
Q psy17412 85 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK-YPTRRKLAIEQVRDSPVLYT 163 (240)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~ 163 (240)
.-+.+.+-.|++.+|....++.++-.|.+.-++..--..++.+|+.......+++++.. +++-|-. ..+.-
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~--------sYv~G 179 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY--------SYVHG 179 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH--------HHHHH
Confidence 34556677899999999999999999999888888888999999999999999998877 5554322 34466
Q ss_pred HHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219 (240)
Q Consensus 164 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 219 (240)
.++..+...|-|++|.+..+++++++|.+..+...++.++...|++.++.++..+-
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 67888899999999999999999999999999999999999999999999987653
No 227
>KOG4507|consensus
Probab=98.40 E-value=4.2e-05 Score=60.97 Aligned_cols=77 Identities=18% Similarity=0.050 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
....++|.+..+.|-...|-..+.+++.+....+-..+.+|+.+..+.+.+.|++.|+.++.++|+++.....+..+
T Consensus 643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 643 VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 44778888888888888999999999988877788899999999999999999999999999999999887766543
No 228
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.40 E-value=1.1e-06 Score=42.99 Aligned_cols=33 Identities=33% Similarity=0.390 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 567888888888888888888888888888764
No 229
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.39 E-value=1.1e-06 Score=42.99 Aligned_cols=32 Identities=34% Similarity=0.401 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 56777777777777777777777777777775
No 230
>KOG2471|consensus
Probab=98.39 E-value=1.7e-06 Score=67.15 Aligned_cols=149 Identities=16% Similarity=0.108 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCC---chHHHHHhccC
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLV-EKYPT---RRKLAIEQVRD 157 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~~---~~~~~~~~~~~ 157 (240)
+.......+.+..+...+....+.+.....+.+.+....+..++..|++.+|.+.+...- ...|. .+.. .
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~------~ 281 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQL------S 281 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchh------h
Confidence 344455666777777777777777877778889999999999999999999999876542 22222 1111 0
Q ss_pred chHHHHHHHHHHHHhcccCchhhHHHHHhh-c--------Ch---------hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 158 SPVLYTNRALTLLHLQLYDPVLPDCDKALR-L--------DE---------DNMKAHLYKARAMHNLGQREEAKEYIREL 219 (240)
Q Consensus 158 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~--------~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 219 (240)
.-..+.++|.++++.|.|..+..+|.++++ . .| ....+.++.|..+...|++-.|.++|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 123478999999999999999999999995 1 11 13568899999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHh
Q psy17412 220 VEKYPTRRKLVENYTQA 236 (240)
Q Consensus 220 ~~~~p~~~~~~~~l~~~ 236 (240)
+..+-.+|.+|..++.+
T Consensus 362 v~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAEC 378 (696)
T ss_pred HHHHhcCcHHHHHHHHH
Confidence 99999999999999876
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.38 E-value=3.7e-05 Score=61.72 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=117.5
Q ss_pred hCCHHHHHHHHHHHHHhcCCC--hHH------HHHHHHHHH----HccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17412 59 SGQYEAALVQYDKAIEQVRDS--PVL------YTNRALTLL----HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~~~~--~~~------~~~la~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 126 (240)
.||-+.+++.+.++.+. ++- +.+ |+.....+. ...+.+.|.+.+.......|+..-..+..|.++..
T Consensus 201 ~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 58999999999998773 222 111 111111111 12345668888999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-hHHHHHHHHHHHHH
Q psy17412 127 LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-NMKAHLYKARAMHN 205 (240)
Q Consensus 127 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~ 205 (240)
.|+.++|+..+++++......+.. ..-.++.+|.++.-+.+|++|..++.+..+.+.- .....+..|.++..
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql-------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQL-------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM 352 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhH-------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 999999999999998544433222 2345899999999999999999999999987554 34445677888999
Q ss_pred cCCH-------HHHHHHHHHHHHhC
Q psy17412 206 LGQR-------EEAKEYIRELVEKY 223 (240)
Q Consensus 206 ~g~~-------~~A~~~~~~~~~~~ 223 (240)
.|+. ++|.+.+.++-...
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999 88888888876543
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.37 E-value=9.8e-06 Score=64.96 Aligned_cols=119 Identities=13% Similarity=0.025 Sum_probs=99.5
Q ss_pred hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHH
Q psy17412 59 SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN----MKAHLYKARAMHSLGQREEAK 134 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~ 134 (240)
..+.+.|.+.+....+..|+.....+..|.++...|+.++|++.+++++...... .-+++.+|.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4567889999999999999999999999999999999999999999988544332 236889999999999999999
Q ss_pred HHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhccc-------CchhhHHHHHhh
Q psy17412 135 EYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLY-------DPVLPDCDKALR 187 (240)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~~l~ 187 (240)
.++.+..+.+.-+... ..+..|.|+...++. ++|.+.+.++-.
T Consensus 326 ~~f~~L~~~s~WSka~----------Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAF----------YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhccccHHHH----------HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999999976654333 466778889999998 777777777643
No 233
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.37 E-value=1.7e-06 Score=42.28 Aligned_cols=34 Identities=35% Similarity=0.483 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
+.+++.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567888888888888888888888888888864
No 234
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.36 E-value=1.7e-06 Score=42.29 Aligned_cols=33 Identities=36% Similarity=0.494 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
.+++.+|.+++.+|++++|+.+++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 567777888888888888888888888777763
No 235
>KOG2471|consensus
Probab=98.35 E-value=3.3e-06 Score=65.53 Aligned_cols=155 Identities=10% Similarity=-0.051 Sum_probs=117.6
Q ss_pred hHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHH-HhcCcc--------cHHHHHHHHH
Q psy17412 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA-LRLDED--------NMKAHLYKAR 122 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~~~~--------~~~~~~~la~ 122 (240)
.-..+....+...+....+.++....+++......+..++..|++.+|.+.+... +...|. ...+|.++|.
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 3445566677777777777788888888889999999999999999998877553 222222 2235788999
Q ss_pred HHHHcCCHHHHHHHHHHHHH-cC----CC-chHH-HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 123 AMHSLGQREEAKEYVRQLVE-KY----PT-RRKL-AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~-~~----~~-~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
+++++|.|.-+..+|.++++ .. .. .+.. ..-.......+.++.|..+...|+.-.|.++|.+++.....++..
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrl 371 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRL 371 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHH
Confidence 99999999999999999996 11 00 0000 000011345779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q psy17412 196 HLYKARAMHNL 206 (240)
Q Consensus 196 ~~~la~~~~~~ 206 (240)
|..++.+++..
T Consensus 372 WLRlAEcCima 382 (696)
T KOG2471|consen 372 WLRLAECCIMA 382 (696)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 236
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.33 E-value=0.00028 Score=48.61 Aligned_cols=119 Identities=13% Similarity=0.103 Sum_probs=87.8
Q ss_pred HHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccC
Q psy17412 100 LPDCDKALRLDEDNM---KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD 176 (240)
Q Consensus 100 ~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 176 (240)
.....+....+|.+. .+-..++..+...|++++|+..++.++....+..-. +.+-..+|.+....|.++
T Consensus 72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk--------~l~~lRLArvq~q~~k~D 143 (207)
T COG2976 72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLK--------ALAALRLARVQLQQKKAD 143 (207)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHH--------HHHHHHHHHHHHHhhhHH
Confidence 334444444443332 345678889999999999999999998754443222 345788999999999999
Q ss_pred chhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 177 PVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 177 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
+|+..+.......- .+......|.++...|+.++|+..|++++..+++.+
T Consensus 144 ~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 144 AALKTLDTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHhccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 99998876543221 234456789999999999999999999999975543
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.22 E-value=5.9e-05 Score=50.70 Aligned_cols=94 Identities=23% Similarity=0.224 Sum_probs=72.8
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCCC----------------------hHHHHHHHHHHHHccCcCchHHHHHHHH
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDS----------------------PVLYTNRALTLLHLQLYDPVLPDCDKAL 107 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 107 (240)
...|......++...++..+.+++...... ..+...++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 334555666778888888888888764221 2355667788889999999999999999
Q ss_pred hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy17412 108 RLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143 (240)
Q Consensus 108 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 143 (240)
..+|.+..++..+-.++...|+..+|+..|++..+.
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988653
No 238
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.21 E-value=6e-05 Score=50.69 Aligned_cols=102 Identities=25% Similarity=0.186 Sum_probs=70.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHH------H-----HhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLA------I-----EQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 189 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------~-----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 189 (240)
|......++.+.++..+++++.+...+.-.. + ........+...++..+...|++++|+..+.+++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 4444555666667777777766554322110 0 0001112346777888889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 190 EDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 190 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
|.+..++..+..++...|+..+|+..|+++...
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988643
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.00021 Score=52.50 Aligned_cols=145 Identities=20% Similarity=0.223 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHH
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (240)
.-+.-+.-....|++.+|...|..++...|.+..+...++.++...|+.+.|...+... |.+... .....
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~------~~~~~ 205 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQD------KAAHG 205 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchh------hHHHH
Confidence 34455667788999999999999999999999999999999999999999988877653 332211 00000
Q ss_pred HHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHhh
Q psy17412 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT--RRKLVENYTQAF 237 (240)
Q Consensus 162 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~ 237 (240)
.......+.+.....+. ..+.+.+..+|++..+.+.+|..+...|+.++|.+.+-..++.+-. +..++..+..++
T Consensus 206 l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f 282 (304)
T COG3118 206 LQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELF 282 (304)
T ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence 11112333444444433 4566778889999999999999999999999999999988887543 445555555443
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.21 E-value=5.5e-05 Score=59.25 Aligned_cols=135 Identities=13% Similarity=0.043 Sum_probs=101.7
Q ss_pred HHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHH------------H
Q psy17412 85 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLA------------I 152 (240)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------~ 152 (240)
.+..-..+..+.+.-++..++|++++|+.+.+|..++.-. .....++..+++++++......... .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 3444555677888889999999999999999998887632 2345778888888877544322110 0
Q ss_pred H--hccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 153 E--QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED--NMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 153 ~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
. .......+...+|.|..+.|+.++|++.+...++..|. +..++.++..++..++.+.++...+.+.-.
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 0 00112456778999999999999999999999988775 567899999999999999999998888643
No 241
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.08 E-value=0.0025 Score=48.86 Aligned_cols=115 Identities=19% Similarity=0.129 Sum_probs=71.8
Q ss_pred HhhHHHHHHhchhH-HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHH---
Q psy17412 32 AMRRFEERKARQDI-ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL--- 107 (240)
Q Consensus 32 ~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--- 107 (240)
++..++....+|.. ...+..+-......|+.+.|+.+-..+....|.-+.++...-...+..|+++.|++..+...
T Consensus 139 Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 139 ARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred HHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 34444444444432 22223333334567888888888888888888887777777777777888888877776543
Q ss_pred --------------------------------------hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 108 --------------------------------------RLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 108 --------------------------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
++.|+...+-..-+..++..|+..++-..++.+.+..|.
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 222333344445566667777777777777777766664
No 242
>KOG1308|consensus
Probab=98.07 E-value=1.7e-06 Score=64.13 Aligned_cols=95 Identities=25% Similarity=0.312 Sum_probs=87.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
.+.-.+..|.+++|+..+..+++++|..... +...+.++.++++...|+..+..+++++|+....+-..
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l-----------~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr 188 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAIL-----------YAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR 188 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhh-----------cccccceeeeccCCchhhhhhhhhhccCcccccccchh
Confidence 3445567789999999999999999998777 99999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 200 ARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
+.+...+|++.+|...+..+.+++-+
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhcccc
Confidence 99999999999999999999988643
No 243
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.04 E-value=1.3e-05 Score=39.02 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
.+++.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46788888888888888888888888888774
No 244
>KOG3617|consensus
Probab=97.97 E-value=0.0012 Score=55.21 Aligned_cols=160 Identities=16% Similarity=0.114 Sum_probs=112.4
Q ss_pred HhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Q psy17412 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQR 130 (240)
Q Consensus 51 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 130 (240)
..|......|-.++|..+|.+.-..+ .+-..|...|.+++|.+..+.--++. --..|++.+..+...++.
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccH
Confidence 34566778888899999888875432 34567778888888877665432222 234688889888999999
Q ss_pred HHHHHHHHHHH----------HcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC-----------
Q psy17412 131 EEAKEYVRQLV----------EKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD----------- 189 (240)
Q Consensus 131 ~~A~~~~~~a~----------~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----------- 189 (240)
+.|+++|+++- .-+|..... .-.-..++.+|..-|......|+.+.|+.+|..+-...
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~-Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQ-YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK 953 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHH-HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC
Confidence 99999998762 222222111 11112345667778888888999999999998875432
Q ss_pred ----------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 190 ----------EDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 190 ----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
..+..+-+.+|+.|...|+..+|+.+|.++-.
T Consensus 954 ~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 954 TDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred chHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 22455678999999999999999999887653
No 245
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.93 E-value=0.00078 Score=46.48 Aligned_cols=117 Identities=16% Similarity=0.083 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCCCh---HHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHH
Q psy17412 64 AALVQYDKAIEQVRDSP---VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYKARAMHSLGQREEAKEYV 137 (240)
Q Consensus 64 ~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~ 137 (240)
+......+....++.+. ..-..++..+...|++++|+..++.++....+. .-+-.+++.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444555555554442 244567888889999999999999888654332 235678899999999999999888
Q ss_pred HHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 138 RQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
.....-.-. +......|.++...|+-++|+..|++++...++.
T Consensus 150 ~t~~~~~w~------------~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEESWA------------AIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hccccccHH------------HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 754332111 2235667999999999999999999999886543
No 246
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.92 E-value=3.7e-05 Score=37.41 Aligned_cols=32 Identities=34% Similarity=0.448 Sum_probs=23.1
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRD 78 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 78 (240)
+.|+.+|.++...|++++|+..|+++++.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45677777777777777777777777777663
No 247
>KOG1585|consensus
Probab=97.89 E-value=0.00026 Score=50.51 Aligned_cols=134 Identities=19% Similarity=0.117 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHccCcCchHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHh
Q psy17412 81 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN------MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQ 154 (240)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 154 (240)
..+..-+.+|...+++++|..++.++.+-..++ ..++-..+.+...+..+.++..+++++..+.-++...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp---- 107 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP---- 107 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc----
Confidence 344455678888899999999999998554433 3456667777888899999999999998765332211
Q ss_pred ccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 155 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN------MKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 155 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
+.+..-...+.-.....+.++|++.|++++.+-..+ .+.+...++++.+..++++|-..+.+-.
T Consensus 108 --dtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 108 --DTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG 177 (308)
T ss_pred --chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence 223334455555667788999999999998764332 4556778889999999999888776543
No 248
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.87 E-value=0.0023 Score=49.07 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
..+...+.......|-.+.|+..++..++.+
T Consensus 154 l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 154 LYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 4567778888889999999999999999876
No 249
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.87 E-value=4.1e-05 Score=36.90 Aligned_cols=32 Identities=38% Similarity=0.619 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 195 AHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
+++.+|.++...|++++|+..|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56788888888888888888888888888864
No 250
>KOG0530|consensus
Probab=97.84 E-value=0.00037 Score=50.24 Aligned_cols=170 Identities=17% Similarity=0.202 Sum_probs=99.2
Q ss_pred HhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc-CcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH-HHHH
Q psy17412 58 QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ-LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQRE-EAKE 135 (240)
Q Consensus 58 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~ 135 (240)
+...-+.|+.+...++..+|.+-.+|..+-.+...++ +..+-++++...++-+|.+.++|...-.+....|++. .-+.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 3445566677777777777776666665555555443 3455566666667767777777766666666666665 5566
Q ss_pred HHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHH-cC-----CH
Q psy17412 136 YVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN-LG-----QR 209 (240)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g-----~~ 209 (240)
..+.++..+..+.-+ |...-.+...-+.++.-+.+....++.+-.+-.+|...-.+... .| ..
T Consensus 135 f~~~~l~~DaKNYHa-----------WshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~l 203 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHA-----------WSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAEL 203 (318)
T ss_pred HHHHHHhccccchhh-----------hHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHH
Confidence 666666665555544 66666666666667766666666666655444444322111111 11 12
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 210 EEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 210 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+.-+.+..+.+...|++..+|..+.-+++
T Consensus 204 e~El~yt~~~I~~vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 204 ERELNYTKDKILLVPNNESAWNYLKGLLE 232 (318)
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 33445555666666666666666655544
No 251
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.84 E-value=0.0017 Score=50.46 Aligned_cols=147 Identities=18% Similarity=0.074 Sum_probs=110.3
Q ss_pred ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch------
Q psy17412 79 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE----DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR------ 148 (240)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 148 (240)
....|...+.+..+.|+++.|...+.++....+ ..+.+.+..+.+....|+..+|+..++..+.......
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 356788899999999999999999999887652 2467788889999999999999999999888211111
Q ss_pred HH-----------------HHHhccCchHHHHHHHHHHHHh------cccCchhhHHHHHhhcChhhHHHHHHHHHHHHH
Q psy17412 149 KL-----------------AIEQVRDSPVLYTNRALTLLHL------QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN 205 (240)
Q Consensus 149 ~~-----------------~~~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 205 (240)
.. ........+.++..+|...... +..++++..|..+++.+|+...+|+..|..+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 00 0011122346677777777777 888899999999999999999999988888654
Q ss_pred cCCH-----------------HHHHHHHHHHHHhCCC
Q psy17412 206 LGQR-----------------EEAKEYIRELVEKYPT 225 (240)
Q Consensus 206 ~g~~-----------------~~A~~~~~~~~~~~p~ 225 (240)
.=+. ..|+..|-+++...+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 305 LLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 3211 3488888888888776
No 252
>KOG1258|consensus
Probab=97.83 E-value=0.011 Score=47.87 Aligned_cols=183 Identities=12% Similarity=0.057 Sum_probs=140.8
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-cccHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-EDNMKAHLYKA 121 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 121 (240)
+.+...|..-.......|+++...-.|++++--.......|...+.-....|+.+-|-..+..+.+.. |..+.....-+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 34556677777777889999999999999988777788999999999999999999988888777665 67777888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchh---hHHHHHhhcChh---hHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL---PDCDKALRLDED---NMKA 195 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~---~~~~~~l~~~~~---~~~~ 195 (240)
......|++..|...++++..-.|+.... -...+.+..+.|..+.+. +.+.....-..+ ....
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~-----------~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l 442 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEV-----------VLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKL 442 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhh-----------HHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHH
Confidence 89999999999999999999888886665 555566677778877776 333333221111 2344
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 196 HLYKARA-MHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 196 ~~~la~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+...++. +.-.++.+.|...+.++....|++...+..+.++
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRF 484 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHH
Confidence 5555555 4457889999999999999999998877776654
No 253
>KOG3617|consensus
Probab=97.80 E-value=0.0051 Score=51.71 Aligned_cols=176 Identities=16% Similarity=0.073 Sum_probs=112.5
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHH----------HhcCC----------ChHHHHHHHHHHHHccCcCchHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAI----------EQVRD----------SPVLYTNRALTLLHLQLYDPVLPDC 103 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~----------~~~~~----------~~~~~~~la~~~~~~~~~~~A~~~~ 103 (240)
..-..+++.|..+...++.+.|+++|+++- ..+|. +...|...|......|+.+.|+.+|
T Consensus 856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 345678888999999999999999999852 22332 4567788899999999999999999
Q ss_pred HHHHhcC---------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCchHH-HHHh-
Q psy17412 104 DKALRLD---------------------EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK------YPTRRKL-AIEQ- 154 (240)
Q Consensus 104 ~~~~~~~---------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~-~~~~- 154 (240)
..+-... ..+..+.|.+|..|...|++.+|+..|.++-.. ..++... .+..
T Consensus 936 ~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 936 SSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred HHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8875321 234457899999999999999999988876433 2222110 0000
Q ss_pred -ccCchHHHHHHH--------------HHHHHhcccCchhhHHHHH-----h-----hcChh-hHHHHHHHHHHHHHcCC
Q psy17412 155 -VRDSPVLYTNRA--------------LTLLHLQLYDPVLPDCDKA-----L-----RLDED-NMKAHLYKARAMHNLGQ 208 (240)
Q Consensus 155 -~~~~~~~~~~la--------------~~~~~~~~~~~A~~~~~~~-----l-----~~~~~-~~~~~~~la~~~~~~g~ 208 (240)
.-..+.-....| .+|.+.|.+.+|++..=+. + .++|+ ++..+..-+..+....+
T Consensus 1016 al~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred HhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH
Confidence 000011112222 2333444444444322110 1 12333 57778888889999999
Q ss_pred HHHHHHHHHHH
Q psy17412 209 REEAKEYIREL 219 (240)
Q Consensus 209 ~~~A~~~~~~~ 219 (240)
|++|...+-.+
T Consensus 1096 yekAV~lL~~a 1106 (1416)
T KOG3617|consen 1096 YEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHHHHHH
Confidence 99998765443
No 254
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.79 E-value=7.8e-05 Score=35.89 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=24.1
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDS 79 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 79 (240)
+++.+|.++...|++++|++.|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777777777777788887777777777763
No 255
>KOG2300|consensus
Probab=97.76 E-value=0.0059 Score=48.16 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=109.0
Q ss_pred HhCCHHHHHHHHHHHHHhcCC------C--------hHHHHHHHHHHHHccCcCchHHHHHHHHhcC---cc-------c
Q psy17412 58 QSGQYEAALVQYDKAIEQVRD------S--------PVLYTNRALTLLHLQLYDPVLPDCDKALRLD---ED-------N 113 (240)
Q Consensus 58 ~~~~~~~A~~~~~~a~~~~~~------~--------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~-------~ 113 (240)
-.|-+++|.++-++++..... . ...+-.++.|-.-.|++.+|++....+.+.. |. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 456778888888887765221 1 1234456777788899999988887776543 33 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh--
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-- 191 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-- 191 (240)
+...+.+|......+.++.|...|..+.+......-. +-.-.++|.+|.+.|+-+.-.+.++. +.|.
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~--------a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt 435 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ--------AFCNLNLAISYLRIGDAEDLYKALDL---IGPLNT 435 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH--------HHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCC
Confidence 4577888888888899999999999998876543222 34467888899987765443333333 3332
Q ss_pred --------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 192 --------NMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 192 --------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
...+++..|...+.++++.||...+.+.++..
T Consensus 436 ~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 436 NSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 14567788888889999999999999998876
No 256
>KOG2396|consensus
Probab=97.76 E-value=0.00043 Score=54.34 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCC-HH
Q psy17412 132 EAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ-RE 210 (240)
Q Consensus 132 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~ 210 (240)
.-...|+.++...+.+... |........+.+.+.+--..|.+++..+|++++.|..-|...+..+. .+
T Consensus 89 rIv~lyr~at~rf~~D~~l-----------W~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~ 157 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKL-----------WLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIE 157 (568)
T ss_pred HHHHHHHHHHHhcCCCHHH-----------HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchH
Confidence 3456778888888877776 88887777777779999999999999999999999999998888776 89
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 211 EAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 211 ~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
.|...+.++++.+|++|.+|..+-++
T Consensus 158 saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 158 SARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred HHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 99999999999999999999887664
No 257
>KOG2300|consensus
Probab=97.76 E-value=0.0083 Score=47.36 Aligned_cols=173 Identities=12% Similarity=0.066 Sum_probs=122.6
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHh---cCC-------ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc-c--H
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQ---VRD-------SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-N--M 114 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~--~ 114 (240)
.+..+..+-.-.|++.+|++......+. .|. .+.+.+.+|......+.++.|...|..+.++-.. + .
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a 404 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA 404 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence 3445556667789999999988887765 344 2446777888888888999999999999876532 2 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh---
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED--- 191 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--- 191 (240)
-+..++|.+|...|+-+.-.+.+ -.+.|.+... .........+++..|...+..+++.+|...+.+.++....
T Consensus 405 ~~nlnlAi~YL~~~~~ed~y~~l---d~i~p~nt~s-~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~ 480 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGDAEDLYKAL---DLIGPLNTNS-LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL 480 (629)
T ss_pred HHHHhHHHHHHHhccHHHHHHHH---HhcCCCCCCc-chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH
Confidence 35567899999987755433333 3355553221 1111223456888888999999999999999999987522
Q ss_pred ---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 192 ---NMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 192 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
..-.+..+|.+..-.|+..++.+..+-++....
T Consensus 481 ~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 481 NRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence 133467789999999999999988877776543
No 258
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.75 E-value=0.0012 Score=50.88 Aligned_cols=149 Identities=12% Similarity=0.035 Sum_probs=98.0
Q ss_pred hHHHHHHHhHhHHHH---hCCHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHc---------cCcCchHHHHHHHHhcC
Q psy17412 44 DIADHFKANGNKAFQ---SGQYEAALVQYDKAI-EQVRDSPVLYTNRALTLLHL---------QLYDPVLPDCDKALRLD 110 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a~-~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~ 110 (240)
.....-+..|.++.+ .|+.++|++.+..++ ...+.+++.+...|.+|-.. ...++|+..|.++.+.+
T Consensus 177 ~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 177 NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 355666778888888 899999999999954 45667788999999888542 23678999999999998
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC
Q psy17412 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLV-EKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 189 (240)
Q Consensus 111 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 189 (240)
|+. -.=.+++.++...|.-.+....+++.. +++.--..........+...+..++.+..-.|++++|.+.++++++..
T Consensus 257 ~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 257 PDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 654 334556666666665444333333322 111000000000011233445666777888999999999999999987
Q ss_pred hhhH
Q psy17412 190 EDNM 193 (240)
Q Consensus 190 ~~~~ 193 (240)
|...
T Consensus 336 ~~~W 339 (374)
T PF13281_consen 336 PPAW 339 (374)
T ss_pred Ccch
Confidence 7644
No 259
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.74 E-value=0.0025 Score=48.85 Aligned_cols=153 Identities=8% Similarity=-0.064 Sum_probs=110.7
Q ss_pred HHHHhchhHHHHHHHhHhHHHHhC------------CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHH
Q psy17412 37 EERKARQDIADHFKANGNKAFQSG------------QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD 104 (240)
Q Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~------------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 104 (240)
+....+|.+.+.|..+...--..- -.+.-+.+|++|++.+|++...+..+-.+..+..+.++...-++
T Consensus 10 ~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we 89 (321)
T PF08424_consen 10 RRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWE 89 (321)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345678888888888776543332 24677899999999999999998888888888888888889999
Q ss_pred HHHhcCcccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCchHH-------HHHhccCchHHHHHHHHHHHHhcc
Q psy17412 105 KALRLDEDNMKAHLYKARAMHS---LGQREEAKEYVRQLVEKYPTRRKL-------AIEQVRDSPVLYTNRALTLLHLQL 174 (240)
Q Consensus 105 ~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~~~ 174 (240)
+++..+|++...|...-..... ...++.....|.+++..-...... ..........+...+.....+.|.
T Consensus 90 ~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~ 169 (321)
T PF08424_consen 90 ELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGY 169 (321)
T ss_pred HHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCc
Confidence 9999999998877665443332 346778888888887642221110 011111224556777777888999
Q ss_pred cCchhhHHHHHhhcC
Q psy17412 175 YDPVLPDCDKALRLD 189 (240)
Q Consensus 175 ~~~A~~~~~~~l~~~ 189 (240)
.+.|+..++-.++++
T Consensus 170 ~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 170 TERAVALWQALLEFN 184 (321)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999998875
No 260
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.73 E-value=0.00087 Score=41.85 Aligned_cols=92 Identities=14% Similarity=0.113 Sum_probs=74.4
Q ss_pred hHhHHHHhCCHHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHccCc-----------CchHHHHHHHHhcCcccHHHH
Q psy17412 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSP---VLYTNRALTLLHLQLY-----------DPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~~~~-----------~~A~~~~~~~~~~~~~~~~~~ 117 (240)
++..++..||+-+|+++.+..+...+++. ..+..-|.++..+..- -.+++.+.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46778999999999999999999887765 5666778877665422 247888999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEK 143 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~ 143 (240)
+.+|.-+....-|+++..--++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99998877777788888888887765
No 261
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.72 E-value=0.00031 Score=37.82 Aligned_cols=39 Identities=28% Similarity=0.369 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
+.++.+|..+.++|+|++|..+.+.+++..|++.++...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 356777888888888888888888888888888776544
No 262
>PRK10941 hypothetical protein; Provisional
Probab=97.70 E-value=0.00039 Score=51.37 Aligned_cols=73 Identities=14% Similarity=0.078 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
....++-.++.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+...
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 4577888899999999999999999999999999999999999999999999999999999999999876543
No 263
>KOG1550|consensus
Probab=97.67 E-value=0.0052 Score=50.81 Aligned_cols=169 Identities=17% Similarity=0.013 Sum_probs=109.0
Q ss_pred HHHhchhHHHHHHHhHhHHHHh-----CCHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHcc-----CcCchHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQS-----GQYEAALVQYDKAIEQ-----VRDSPVLYTNRALTLLHLQ-----LYDPVLPD 102 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~-----~~~~A~~~ 102 (240)
+......+..+...+|.++..- .|.+.|+.+|+.+... ....+.+.+.+|.+|.+.. +++.|+.+
T Consensus 236 ~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~ 315 (552)
T KOG1550|consen 236 REAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKL 315 (552)
T ss_pred HHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHH
Confidence 3344555666777777776643 5788888888888661 1124556777888887743 45568888
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh----ccc
Q psy17412 103 CDKALRLDEDNMKAHLYKARAMHSLG---QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL----QLY 175 (240)
Q Consensus 103 ~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~ 175 (240)
+.++.... ++.+.+.+|.++..-. +...|..+|..+.+..- .. ..+.+|.||..- .+.
T Consensus 316 ~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~-----------A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 316 YTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--IL-----------AIYRLALCYELGLGVERNL 380 (552)
T ss_pred HHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--hH-----------HHHHHHHHHHhCCCcCCCH
Confidence 87777653 4567778888877655 56678888887776543 22 277777777653 356
Q ss_pred CchhhHHHHHhhcChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Q psy17412 176 DPVLPDCDKALRLDEDNMKAHLYKARAMHNL-GQREEAKEYIRELVEKY 223 (240)
Q Consensus 176 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~ 223 (240)
..|..+++++.+.. .+.+...++..+..- ++++.+.-.+.......
T Consensus 381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhh
Confidence 67788888887766 445555555554332 77777766665554443
No 264
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.66 E-value=0.013 Score=44.26 Aligned_cols=162 Identities=15% Similarity=-0.051 Sum_probs=115.4
Q ss_pred HHHHHhHhHHHH----hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----ccCcCchHHHHHHHHhcCccc-HHHH
Q psy17412 47 DHFKANGNKAFQ----SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLH----LQLYDPVLPDCDKALRLDEDN-MKAH 117 (240)
Q Consensus 47 ~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~-~~~~ 117 (240)
.....++..+.. ..+..+|..+|..+.+ ...+...+.+|.+|.. ..+..+|..+|.++....-.. ..+.
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~ 151 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM 151 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence 456666666654 3467889999885443 3567788889998887 448889999999998775333 3447
Q ss_pred HHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh----cccCchhhHHHHHh
Q psy17412 118 LYKARAMHSLG-------QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL----QLYDPVLPDCDKAL 186 (240)
Q Consensus 118 ~~la~~~~~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~l 186 (240)
+.+|.++..-. +...|...|.++-... ++. ....+|.+|..- .++.+|..+|.++-
T Consensus 152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~-----------a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa 218 (292)
T COG0790 152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPD-----------AQLLLGRMYEKGLGVPRDLKKAFRWYKKAA 218 (292)
T ss_pred HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHH-----------HHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 77787776641 2336888888877765 333 388888877653 47789999999998
Q ss_pred hcChhhHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHhCCCc
Q psy17412 187 RLDEDNMKAHLYKARAMHNLG---------------QREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 187 ~~~~~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~~~~~~p~~ 226 (240)
+... ....+.++ ++...| +...|..++..+....+..
T Consensus 219 ~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 219 EQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 8776 77778888 666655 7788888888877665543
No 265
>KOG1914|consensus
Probab=97.65 E-value=0.021 Score=45.84 Aligned_cols=150 Identities=15% Similarity=0.122 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHcc---CcCchHHHHHHHHhcCcccH-HHHHHHHHHHHHcCCHHHHHHH
Q psy17412 62 YEAALVQYDKAIEQVRD-SPVLYTNRALTLLHLQ---LYDPVLPDCDKALRLDEDNM-KAHLYKARAMHSLGQREEAKEY 136 (240)
Q Consensus 62 ~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~ 136 (240)
-+++..+|++++...-. +...++.++..-...- +++...+.+++++.....++ -++..+-..-.+..-...|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 67788888888775332 3334444444333322 36677777888776543332 2444455555555566677777
Q ss_pred HHHHHHcCCCchHHHHHhccCchHHHHHHHH-HHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHH
Q psy17412 137 VRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL-TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215 (240)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 215 (240)
|.++-+........ +..-|. -|...++..-|...|+-.++..++.+..-......+..+++-..|...
T Consensus 389 F~kaR~~~r~~hhV-----------fVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~L 457 (656)
T KOG1914|consen 389 FKKAREDKRTRHHV-----------FVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARAL 457 (656)
T ss_pred HHHHhhccCCcchh-----------hHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHH
Confidence 77776543332222 333332 244567888888888888888888887777777788888888888888
Q ss_pred HHHHHHh
Q psy17412 216 IRELVEK 222 (240)
Q Consensus 216 ~~~~~~~ 222 (240)
|++++..
T Consensus 458 FEr~l~s 464 (656)
T KOG1914|consen 458 FERVLTS 464 (656)
T ss_pred HHHHHhc
Confidence 8888876
No 266
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.63 E-value=0.0022 Score=40.47 Aligned_cols=108 Identities=28% Similarity=0.245 Sum_probs=73.3
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCchHH-HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc---
Q psy17412 115 KAHLYKARA--MHSLGQREEAKEYVRQLVEKYPTRRKL-AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--- 188 (240)
Q Consensus 115 ~~~~~la~~--~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--- 188 (240)
.+|..|+.. .+.-|-|++|...++++++....-|.. +.....-++-.+..++..+..+|+|++++....+++..
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 345555443 455688999999999999875543321 12222334566888999999999999988777777643
Q ss_pred ----Chhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 189 ----DEDN----MKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 189 ----~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
+.+. ..+.+..+..+..+|+.++|+..|+.+-++
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3333 445578899999999999999999988754
No 267
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.62 E-value=0.0037 Score=48.57 Aligned_cols=172 Identities=14% Similarity=0.030 Sum_probs=101.7
Q ss_pred HHHHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc--
Q psy17412 36 FEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN-- 113 (240)
Q Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-- 113 (240)
..-....|-+.+++..++.++..+|+...|.+++++|+-.........+..-..-...|.-. +. -..+.|
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~r-----L~---~~~~eNR~ 101 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCR-----LD---YRRPENRQ 101 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccc-----cC---CccccchH
Confidence 33456778888888888888888888888888888887543221111110000000000000 00 001222
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh-
Q psy17412 114 -MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT-RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE- 190 (240)
Q Consensus 114 -~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~- 190 (240)
..+.+.....+.+.|-+..|.++.+-.+.++|. |+-. +...+-....+.++|+--+..++.......
T Consensus 102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g----------~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~ 171 (360)
T PF04910_consen 102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG----------VLLFIDYYALRSRQYQWLIDFSESPLAKCYR 171 (360)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch----------hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh
Confidence 234555666777888888888888888888887 4433 244444444556666655555554433111
Q ss_pred h----hHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q psy17412 191 D----NMKAHLYKARAMHNLGQR---------------EEAKEYIRELVEKYPT 225 (240)
Q Consensus 191 ~----~~~~~~~la~~~~~~g~~---------------~~A~~~~~~~~~~~p~ 225 (240)
+ -+..-+..+.++..+++. ++|...+.+++...|.
T Consensus 172 ~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 172 NWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 1 234567777777778777 8899999999888774
No 268
>KOG0530|consensus
Probab=97.62 E-value=0.0045 Score=44.91 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=116.6
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHH
Q psy17412 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG-QREEAKEYVR 138 (240)
Q Consensus 60 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~ 138 (240)
.+|.++..+|+..+..+..+ ..|+.....++.++|.+..+|...-.++..++ +..+-+.++.
T Consensus 40 e~fr~~m~YfRAI~~~~E~S-----------------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~ 102 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKS-----------------PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD 102 (318)
T ss_pred hhHHHHHHHHHHHHhccccC-----------------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45566666666555554444 45666777889999999888887777776654 6778889999
Q ss_pred HHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccC-chhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 139 QLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD-PVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIR 217 (240)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 217 (240)
.+++-+|.+... |...-.+....|++. .-++..+.++..+..+-.+|...-.+....+.++.-+.+..
T Consensus 103 eI~e~npKNYQv-----------WHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 103 EIIEDNPKNYQV-----------WHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHhCccchhH-----------HHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999888 888888888888887 78899999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHH
Q psy17412 218 ELVEKYPTRRKLVE 231 (240)
Q Consensus 218 ~~~~~~p~~~~~~~ 231 (240)
+.++.+-.+..+|.
T Consensus 172 ~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 172 ELLEEDIRNNSAWN 185 (318)
T ss_pred HHHHHhhhccchhh
Confidence 99988876655554
No 269
>KOG1550|consensus
Probab=97.62 E-value=0.02 Score=47.47 Aligned_cols=148 Identities=15% Similarity=-0.024 Sum_probs=109.5
Q ss_pred hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc-----cCcCchHHHHHHHHhc-----CcccHHHHHHHHHHHHHcC
Q psy17412 59 SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL-----QLYDPVLPDCDKALRL-----DEDNMKAHLYKARAMHSLG 128 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~ 128 (240)
.++...|..+++.+.+. .+......+|.||..- .+.+.|+.+++.+... ...++.+.+.+|.+|.+-.
T Consensus 225 ~~~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 225 SGELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGL 302 (552)
T ss_pred chhhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCC
Confidence 34567788888887766 4566777788888764 5788899999888761 1124567888888888743
Q ss_pred -----CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc---ccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 129 -----QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ---LYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 129 -----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
++..|..++.++-.....+. .+.+|.++.... ++..|.++|..+.+. .+..+.+.++
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~~a-------------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la 367 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNPDA-------------QYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLA 367 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCchH-------------HHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHH
Confidence 67789999999888765433 677888777655 567899999988765 3577888888
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHhC
Q psy17412 201 RAMHN----LGQREEAKEYIRELVEKY 223 (240)
Q Consensus 201 ~~~~~----~g~~~~A~~~~~~~~~~~ 223 (240)
.++.. .-+...|..++.++....
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 87764 347788999999988887
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.59 E-value=0.00019 Score=35.38 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 195 AHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
++..+|.++..+|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567888888888888888888885543
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.57 E-value=0.0051 Score=47.78 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=95.9
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHccCcCchHHHHHHHHhc-Cc-----
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRD----SPVLYTNRALTLLHLQLYDPVLPDCDKALRL-DE----- 111 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~----- 111 (240)
....+..|...+....+.|+++.|...+.++...++. .+.+....+......|+..+|+..++..+.. ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 4467788999999999999999999999999886522 4678888899999999999999999888761 10
Q ss_pred ----------------------------ccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHcCCCchHHHHHhccC
Q psy17412 112 ----------------------------DNMKAHLYKARAMHSL------GQREEAKEYVRQLVEKYPTRRKLAIEQVRD 157 (240)
Q Consensus 112 ----------------------------~~~~~~~~la~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 157 (240)
....++..+|...... +..+++...|.++++..|+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~------- 294 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKA------- 294 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHH-------
Confidence 1134666777777777 88899999999999999998777
Q ss_pred chHHHHHHHHHHHHh
Q psy17412 158 SPVLYTNRALTLLHL 172 (240)
Q Consensus 158 ~~~~~~~la~~~~~~ 172 (240)
+...|..+...
T Consensus 295 ----~~~~a~~~~~~ 305 (352)
T PF02259_consen 295 ----WHSWALFNDKL 305 (352)
T ss_pred ----HHHHHHHHHHH
Confidence 77777766554
No 272
>KOG1310|consensus
Probab=97.57 E-value=0.00059 Score=54.06 Aligned_cols=108 Identities=31% Similarity=0.393 Sum_probs=94.9
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc---CcCchHHHHHHHHhcCcccHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ---LYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
+-+..++.....|+-.+..+.+..++..|.++++..|+...++.+.+.++++.+ +.-.|+.....+++++|....++
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence 455677778888888888889999999999999999999999999999998764 55567788888999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRR 148 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 148 (240)
+.++.++..++++.+|+.+...+....|.+.
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 9999999999999999999998888888543
No 273
>PRK10941 hypothetical protein; Provisional
Probab=97.56 E-value=0.0012 Score=48.80 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=61.2
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
.+.+.++-..+.+.++++.|+.+.+..+...|+++.-+..+|.+|.++|.+..|...++..++..|+++.+-.....
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 34555666777888888888888888888888888888888888888888888888888888888888776544433
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.53 E-value=0.0003 Score=34.69 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=18.1
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
+..+|.++...|+|++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566777777777777777777775543
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.51 E-value=0.0032 Score=42.31 Aligned_cols=100 Identities=15% Similarity=0.028 Sum_probs=79.9
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
....+..........++.+.+...+...--+.|..+.+-..-|.++...|++.+|+..++.+....|..+.+.-.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34566677777788889999999999888899999999999999999999999999999999888888888888899999
Q ss_pred HHcCCHHHHHHHHHHHHHcCC
Q psy17412 125 HSLGQREEAKEYVRQLVEKYP 145 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~ 145 (240)
..+|+.+= ..+-.++++..+
T Consensus 89 ~~~~D~~W-r~~A~evle~~~ 108 (160)
T PF09613_consen 89 YALGDPSW-RRYADEVLESGA 108 (160)
T ss_pred HHcCChHH-HHHHHHHHhcCC
Confidence 88887542 222334444443
No 276
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.50 E-value=0.0065 Score=38.45 Aligned_cols=93 Identities=32% Similarity=0.436 Sum_probs=70.5
Q ss_pred HhHhHHHHhCCHHHHHHHHHHHHHhcCC------------ChHHHHHHHHHHHHccCcCchHHHHHHHHh-------cCc
Q psy17412 51 ANGNKAFQSGQYEAALVQYDKAIEQVRD------------SPVLYTNRALTLLHLQLYDPVLPDCDKALR-------LDE 111 (240)
Q Consensus 51 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-------~~~ 111 (240)
..|...+..|-|++|...+.++++.... +..++..++..+..+|+|++++....+++. ++.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 3455567789999999999999987432 255788899999999999998888888774 333
Q ss_pred cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy17412 112 DN----MKAHLYKARAMHSLGQREEAKEYVRQLVEK 143 (240)
Q Consensus 112 ~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 143 (240)
+. ..+-+..+..+...|+.++|+..|+.+-+.
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 33 335567889999999999999999988664
No 277
>KOG0985|consensus
Probab=97.46 E-value=0.02 Score=49.50 Aligned_cols=77 Identities=13% Similarity=0.086 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcccCchhhHHHHHhhcC--hh-----------------------hHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17412 162 YTNRALTLLHLQLYDPVLPDCDKALRLD--ED-----------------------NMKAHLYKARAMHNLGQREEAKEYI 216 (240)
Q Consensus 162 ~~~la~~~~~~~~~~~A~~~~~~~l~~~--~~-----------------------~~~~~~~la~~~~~~g~~~~A~~~~ 216 (240)
+..++..+..+|+|..|.....++-... .. +++-+-.+...|...|-+++-+..+
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 7778888888999998888777763321 00 1233456677788899999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHhhh
Q psy17412 217 RELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 217 ~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+.++.+...+......++.++.
T Consensus 1303 Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1303 EAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HhhhchhHHHHHHHHHHHHHHH
Confidence 9998887777666666766654
No 278
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.43 E-value=0.03 Score=42.38 Aligned_cols=165 Identities=16% Similarity=0.017 Sum_probs=120.4
Q ss_pred hHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc----cCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH-
Q psy17412 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL----QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS- 126 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~- 126 (240)
.+......+++..+...+..+-.. .++.....++.+|..- .+..+|..+|+.+.. ..++.+.+.+|.++..
T Consensus 47 ~~~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G 122 (292)
T COG0790 47 NGAGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANG 122 (292)
T ss_pred ccccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcC
Confidence 344445678899999999888763 2346777888888764 356778888885554 4567788999999887
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc-------ccCchhhHHHHHhhcChhhHHHH
Q psy17412 127 ---LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ-------LYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 127 ---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
..+..+|..+|+++.+...... ......+|.++..-. +...|+..|.++-... ++.+.
T Consensus 123 ~gv~~d~~~A~~~~~~Aa~~g~~~a----------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~ 190 (292)
T COG0790 123 RGVPLDLVKALKYYEKAAKLGNVEA----------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQ 190 (292)
T ss_pred CCcccCHHHHHHHHHHHHHcCChhH----------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHH
Confidence 4599999999999999865542 112566676666541 2336888888877655 67788
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 197 LYKARAMHN----LGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 197 ~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
..+|.+|.. ..++.+|..+|.++-+... ......++
T Consensus 191 ~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 191 LLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 888887755 3488999999999998876 66666665
No 279
>KOG1914|consensus
Probab=97.43 E-value=0.016 Score=46.43 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=102.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHccC--------------cCchHHHHHHHHhcCc-ccHHHHHHHHHHHHHcC---
Q psy17412 67 VQYDKAIEQVRDSPVLYTNRALTLLHLQL--------------YDPVLPDCDKALRLDE-DNMKAHLYKARAMHSLG--- 128 (240)
Q Consensus 67 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~--- 128 (240)
=.|++++..-+..+.+|+..+......++ -+++..++++++.... .+...++.++..-...-
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc
Confidence 34677777777778888776665555544 4566667777664332 23333444443332222
Q ss_pred CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHH-HHHcC
Q psy17412 129 QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA-MHNLG 207 (240)
Q Consensus 129 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~-~~~~g 207 (240)
+++.....+++++.+...++.. ++..+-..-.+..-...|...|.++-+.......++..-|.+ |...+
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tL----------v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk 415 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTL----------VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK 415 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCce----------ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC
Confidence 3666777788887765554433 355555555566667788889998876544433455554444 56689
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 208 QREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 208 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+..-|...|+-.++..++++.....+...
T Consensus 416 D~~~AfrIFeLGLkkf~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 416 DKETAFRIFELGLKKFGDSPEYVLKYLDF 444 (656)
T ss_pred ChhHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 99999999999999999998876665543
No 280
>KOG2396|consensus
Probab=97.41 E-value=0.0037 Score=49.36 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q psy17412 63 EAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQ-REEAKEYVRQLV 141 (240)
Q Consensus 63 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~ 141 (240)
..-...|+.+....+.++..|........+.+.+.+-...|.+++..+|++++.|..-|.-.+.-+. .+.|...+.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3556789999999999999999888777778889999999999999999999999999987777665 999999999999
Q ss_pred HcCCCchHH
Q psy17412 142 EKYPTRRKL 150 (240)
Q Consensus 142 ~~~~~~~~~ 150 (240)
+.+|+++..
T Consensus 168 R~npdsp~L 176 (568)
T KOG2396|consen 168 RFNPDSPKL 176 (568)
T ss_pred hcCCCChHH
Confidence 999999887
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.40 E-value=0.017 Score=38.88 Aligned_cols=84 Identities=19% Similarity=0.029 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchH
Q psy17412 81 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160 (240)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (240)
..+..+..+-...++.+++...+...--+.|..+..-..-|.++...|+|.+|+..++.+....|..+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~---------- 80 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYA---------- 80 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHH----------
Confidence 3455555666667777777777777777777777777777778888888888888887777777666555
Q ss_pred HHHHHHHHHHHhccc
Q psy17412 161 LYTNRALTLLHLQLY 175 (240)
Q Consensus 161 ~~~~la~~~~~~~~~ 175 (240)
.-.++.|+...|+.
T Consensus 81 -kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 81 -KALLALCLYALGDP 94 (160)
T ss_pred -HHHHHHHHHHcCCh
Confidence 66677777766654
No 282
>KOG1839|consensus
Probab=97.40 E-value=0.0025 Score=55.80 Aligned_cols=176 Identities=14% Similarity=0.047 Sum_probs=130.7
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHH------HHHHHH-HhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC------
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALV------QYDKAI-EQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD------ 110 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~------~~~~a~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------ 110 (240)
..+......|......|.+.+|.+ ++.... ...|+...++..++.++...|++++|+..-.++.-..
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 345666778888888888888888 444332 2367778899999999999999999999988876332
Q ss_pred --cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 111 --EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 111 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
|+....+.+++...+..++...|...+.++..+.--... ...|....+..+++.++...++++.|+.+++.+++.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g---e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG---EDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC---CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 566778889999999999999999999988775211100 012233555788898988999999999999999886
Q ss_pred Chh--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 189 DED--------NMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 189 ~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
..+ ....+..+++....+|++..|....+....+
T Consensus 1087 ~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1087 NKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 432 3455677788888888888877776665543
No 283
>KOG3824|consensus
Probab=97.36 E-value=0.00095 Score=49.45 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=68.3
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
.+..-...|.-....|+.++|..+|..++.+.|+++.++..+|......++.-+|-.+|-+++.++|.+.+++.+.+..
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3444455666778899999999999999999999999999999999888999999999999999999999888776543
No 284
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.34 E-value=0.0026 Score=38.71 Aligned_cols=75 Identities=17% Similarity=0.077 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh--HHHHHHHHHHHHHcCCHH
Q psy17412 133 AKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN--MKAHLYKARAMHNLGQRE 210 (240)
Q Consensus 133 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~ 210 (240)
.+..+++.+..+|++... .+.+|..+...|++++|++.+..+++.++++ ..+...+-.++..+|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~a-----------r~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDA-----------RYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHH-----------HHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 345667777777877766 8888888888888888888888888887764 455555556666666654
Q ss_pred HHHHHHHH
Q psy17412 211 EAKEYIRE 218 (240)
Q Consensus 211 ~A~~~~~~ 218 (240)
.....|++
T Consensus 76 plv~~~RR 83 (90)
T PF14561_consen 76 PLVSEYRR 83 (90)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 44444433
No 285
>KOG4507|consensus
Probab=97.31 E-value=0.0031 Score=50.88 Aligned_cols=114 Identities=16% Similarity=0.059 Sum_probs=85.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy17412 68 QYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK--AHLYKARAMHSLGQREEAKEYVRQLVEKYP 145 (240)
Q Consensus 68 ~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 145 (240)
+...+++..|.+...+..-+..+...|+..+|..++..++-..|...+ +...+|.++.++|...+|--.+..|+.-.|
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 344556666666555555555556678888999999888877765433 677888889999988888888877777666
Q ss_pred CchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 146 TRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
....- ++.++.++..++++......|..+.+.+|..
T Consensus 281 ~~t~n-----------~y~l~~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 281 FFTSN-----------YYTLGNIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred ccccc-----------ceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence 55444 7888888888888888888888888887764
No 286
>KOG3824|consensus
Probab=97.28 E-value=0.00083 Score=49.74 Aligned_cols=73 Identities=12% Similarity=0.015 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
.+.+.-..+.|+.++|...|+.++.+.|++++++..+|.......+.-+|-.+|-+++.++|.+.++..+-.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3444445577999999999999999999999999999999999999999999999999999999888766443
No 287
>KOG4814|consensus
Probab=97.28 E-value=0.0041 Score=50.62 Aligned_cols=98 Identities=13% Similarity=0.197 Sum_probs=86.2
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
..+.+.|...++..+|..+++.|...+...|.+ ......++.||..+.+.+.|.++++.|-+.+|.++-.....
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 345667888899999999999999999987765 55778899999999999999999999999999999888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKY 144 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~ 144 (240)
..+....|+-++|+.+........
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhh
Confidence 899999999999999988876653
No 288
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.27 E-value=0.0026 Score=34.28 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=18.3
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHH
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 83 (240)
.++.+|..+++.|+|++|..+.+.+++..|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 344555555555555555555555555555554443
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.25 E-value=0.011 Score=44.42 Aligned_cols=132 Identities=14% Similarity=0.049 Sum_probs=71.2
Q ss_pred HccCcCchHHHHHHHHhcC----ccc----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCC----chHHHHHhccCc
Q psy17412 92 HLQLYDPVLPDCDKALRLD----EDN----MKAHLYKARAMHSLG-QREEAKEYVRQLVEKYPT----RRKLAIEQVRDS 158 (240)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~----~~~----~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~~ 158 (240)
..|+.+.|..++.|+-... |+. ...+++.|......+ ++++|..++++++++-+. .... .......
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~-~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLS-PDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccC-CcHHHHH
Confidence 3445555555555443222 221 235566666666666 777777777777766211 1000 0000112
Q ss_pred hHHHHHHHHHHHHhcccC---chhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 159 PVLYTNRALTLLHLQLYD---PVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~---~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
..++..++.++...+.++ +|...++.+-...|+.+..+...-.+..+.++.+++.+.+.+.+...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 345666777777766554 344444444455566666665555555557777777777777766543
No 290
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.24 E-value=0.00067 Score=31.91 Aligned_cols=32 Identities=31% Similarity=0.369 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
.++..+|.++..+|++++|...++++++..|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 34666777777777777777777777776654
No 291
>KOG1310|consensus
Probab=97.23 E-value=0.0021 Score=51.16 Aligned_cols=102 Identities=25% Similarity=0.218 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh---cccCchhhHHHHHhhcCh
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL---QLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~l~~~~ 190 (240)
.+....-|.-.+..+.+..++..|.+++...|..... +.+.+.++++. |+.-.|+.....+++++|
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~-----------l~nraa~lmkRkW~~d~~~AlrDch~Alrln~ 442 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYL-----------LENRAAALMKRKWRGDSYLALRDCHVALRLNP 442 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHH-----------HHhHHHHHHhhhccccHHHHHHhHHhhccCCh
Confidence 3334444444455566778888888888888887666 88888888875 455567777888899999
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 191 DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 191 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
....+++.+++++..++++.+|+.+...+....|.+
T Consensus 443 s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 443 SIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 999999999999999999999999888777777754
No 292
>KOG3783|consensus
Probab=97.23 E-value=0.043 Score=44.04 Aligned_cols=188 Identities=16% Similarity=0.055 Sum_probs=121.2
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVR--DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 115 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 115 (240)
.....|+.+.-.+..+..+...|+.+.|+..+...+...- -...+++.+|.++.-..+|..|...+......+.-+--
T Consensus 259 ~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a 338 (546)
T KOG3783|consen 259 YRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHA 338 (546)
T ss_pred HHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHH
Confidence 3455677777888888888888888888888888777110 12456778899999999999999988888766532222
Q ss_pred HHHHHH-HHHHH--------cCCHHHHHHHHHHH---HHcCCCchHH---------------------------------
Q psy17412 116 AHLYKA-RAMHS--------LGQREEAKEYVRQL---VEKYPTRRKL--------------------------------- 150 (240)
Q Consensus 116 ~~~~la-~~~~~--------~~~~~~A~~~~~~a---~~~~~~~~~~--------------------------------- 150 (240)
.|..++ .|++. .|+-++|-.+++.. +...|.+...
T Consensus 339 ~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~ 418 (546)
T KOG3783|consen 339 FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYF 418 (546)
T ss_pred HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHH
Confidence 222233 33321 22444433333322 2221111100
Q ss_pred ----------------------HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh---h----hHHHHHHHHH
Q psy17412 151 ----------------------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE---D----NMKAHLYKAR 201 (240)
Q Consensus 151 ----------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~---~----~~~~~~~la~ 201 (240)
.+.+..+..-.+..+|.++..+|+-..|..++...++... + .|.+++.+|.
T Consensus 419 Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~ 498 (546)
T KOG3783|consen 419 WNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELAL 498 (546)
T ss_pred HhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence 0000011123467788999999999999999988874321 1 2678999999
Q ss_pred HHHHcCC-HHHHHHHHHHHHHhCCC
Q psy17412 202 AMHNLGQ-REEAKEYIRELVEKYPT 225 (240)
Q Consensus 202 ~~~~~g~-~~~A~~~~~~~~~~~p~ 225 (240)
.++.+|. ..++.+++.++-.-..+
T Consensus 499 l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 499 LYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHhcccChHHHHHHHHHHHhhccc
Confidence 9999998 99999999999877644
No 293
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.22 E-value=0.01 Score=37.20 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=65.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcc-----------cCchhhHHHHHhhc
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL-----------YDPVLPDCDKALRL 188 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-----------~~~A~~~~~~~l~~ 188 (240)
++.-++..|++-+|++.++..+...+++... ...+..-|.++.++.. .-.+++.+.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~--------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS--------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch--------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc
Confidence 3556777788888888888888777766532 1224444555544321 23578888999999
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 189 DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 189 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
.|..+..++.+|.-+-...-|+++..-.++++..
T Consensus 74 sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 74 SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 9998888888887766666677777777777754
No 294
>KOG4814|consensus
Probab=97.22 E-value=0.076 Score=43.72 Aligned_cols=103 Identities=10% Similarity=0.088 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
++.+-|.-.++..+|..+++.|...+...|.+... ...+....+++.||..+.+.+.|.+++..+-+.+|.++-.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~-----~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~ 430 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS-----DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC 430 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhh-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH
Confidence 45667788899999999999999999988875432 1225668889999999999999999999999999999998
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
...+..+....|+-++|+..........
T Consensus 431 q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 431 QLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 8899999999999999999988877553
No 295
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.22 E-value=0.00075 Score=31.73 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 195 AHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
++..+|.++..+|++++|..+++++++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566777777777777777777777766654
No 296
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.20 E-value=0.0099 Score=42.61 Aligned_cols=92 Identities=17% Similarity=0.100 Sum_probs=63.0
Q ss_pred cCCHHHHHHHHHHHHHc----CCCchHHHHHhccCchHHHHHHHHHHHHhcccC-------chhhHHHHHhhcCh-----
Q psy17412 127 LGQREEAKEYVRQLVEK----YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD-------PVLPDCDKALRLDE----- 190 (240)
Q Consensus 127 ~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-------~A~~~~~~~l~~~~----- 190 (240)
...+++|+..|.-|+-. ...... .+.++..+|++|...|+-+ .|+..|.++++...
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~--------~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~ 161 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSK--------KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEG 161 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHH--------HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCC
Confidence 34566777777666542 112212 2456888899988888844 45555555554332
Q ss_pred -hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 191 -DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 191 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
+...+.+.+|.+..+.|++++|..+|.+++.....+
T Consensus 162 ~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 162 MDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 236788999999999999999999999999765443
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.19 E-value=0.011 Score=41.10 Aligned_cols=101 Identities=17% Similarity=0.077 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh---
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED--- 191 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--- 191 (240)
.++..+|..|.+.|+.++|++.|.++.+........ .+.++.+..+....+++.....++.++-..-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~--------id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d 108 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK--------IDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD 108 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch
Confidence 456667777777777777777777766654433222 344666666666677777776666666443211
Q ss_pred ---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 192 ---NMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 192 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
........|..++..++|.+|-..|-.+..-.
T Consensus 109 ~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 109 WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 12234556666777888888888876665433
No 298
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.18 E-value=0.038 Score=43.49 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=64.1
Q ss_pred HHHHHHHhHhHHHHhCC-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHH--HHHHHHh---------cCc-
Q psy17412 45 IADHFKANGNKAFQSGQ-YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLP--DCDKALR---------LDE- 111 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~~~~---------~~~- 111 (240)
.+..+...|.-+.+.|. -++|+++++.+++..|.+..+.... ..+-...|.+|+. .+.+.+. +.|
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 34455566666777776 6677777777777776665433211 1111111222211 1111111 111
Q ss_pred --ccHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHH
Q psy17412 112 --DNMKAHLYK--ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 184 (240)
Q Consensus 112 --~~~~~~~~l--a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 184 (240)
.+.+.-..+ |..++..|+|.++..+-.-..++.| ++.+ +..+|.|.+...+|++|..++..
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~-----------~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQA-----------YRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHH-----------HHHHHHHHHHHhhHHHHHHHHHh
Confidence 111222222 3345566666666666666666666 3444 66666666666666666666644
No 299
>KOG2041|consensus
Probab=97.16 E-value=0.015 Score=48.13 Aligned_cols=157 Identities=14% Similarity=0.039 Sum_probs=85.4
Q ss_pred HHHHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---------hHHHHHHHHHHHHccCcCchHHHHHHH
Q psy17412 36 FEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---------PVLYTNRALTLLHLQLYDPVLPDCDKA 106 (240)
Q Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~ 106 (240)
.....++..+++.|..+|......-.++.|...|-+.-.. +.- ..--...+.+-..-|++++|.+.|-.+
T Consensus 682 A~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 682 AIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA 760 (1189)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence 3344566778899999999988888888888777665322 110 000012233333345555555544322
Q ss_pred Hh----------------------c---C---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCc
Q psy17412 107 LR----------------------L---D---EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDS 158 (240)
Q Consensus 107 ~~----------------------~---~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (240)
-+ . + ..-..++..+|..+..+..|++|.++|.+.-.
T Consensus 761 drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------------- 824 (1189)
T KOG2041|consen 761 DRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------------- 824 (1189)
T ss_pred chhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------
Confidence 11 1 0 11135788889999999999999888876532
Q ss_pred hHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17412 159 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYI 216 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 216 (240)
.-+...+++...+|++ ++.....-|++...+-.+|..+...|.-++|.+.|
T Consensus 825 ---~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 825 ---TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred ---hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 3344455555555443 22222233444444444454444444444444433
No 300
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.16 E-value=0.0061 Score=37.07 Aligned_cols=47 Identities=21% Similarity=0.161 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc
Q psy17412 66 LVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112 (240)
Q Consensus 66 ~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 112 (240)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 33445555555555555555666666666666665555555555543
No 301
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.14 E-value=0.011 Score=42.46 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=67.8
Q ss_pred HHHHhCCHHHHHHHHHHHHHhc----CC---ChHHHHHHHHHHHHccCcCc-------hHHHHHHHHhcC--c----ccH
Q psy17412 55 KAFQSGQYEAALVQYDKAIEQV----RD---SPVLYTNRALTLLHLQLYDP-------VLPDCDKALRLD--E----DNM 114 (240)
Q Consensus 55 ~~~~~~~~~~A~~~~~~a~~~~----~~---~~~~~~~la~~~~~~~~~~~-------A~~~~~~~~~~~--~----~~~ 114 (240)
-+.....+++|++.|.-|+-.. .+ -+.++..+|++|...|+.+. |++.|.++++.. | +..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 3344567889999888877642 11 15678889999999998554 555555555433 1 235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
.+.+.+|.+..+.|++++|..+|.+++.....+
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999865443
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.10 E-value=0.045 Score=38.05 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=79.6
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc--cH--
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED--NM-- 114 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~-- 114 (240)
....-..+..+|..|.+.|++++|++.|.++.+..... ...+..+..+.+..+++.....++.++-..-.. +.
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 34456788999999999999999999999988765433 457778888889999999999999888755322 22
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy17412 115 --KAHLYKARAMHSLGQREEAKEYVRQLVEKY 144 (240)
Q Consensus 115 --~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 144 (240)
......|..+...++|.+|...|-.+..-.
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 234556777888899999999987765444
No 303
>KOG3364|consensus
Probab=97.10 E-value=0.017 Score=37.54 Aligned_cols=77 Identities=13% Similarity=0.049 Sum_probs=60.2
Q ss_pred hhHHHHHHHhHhHHHHhC---CHHHHHHHHHHHHH-hcCCC-hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 43 QDIADHFKANGNKAFQSG---QYEAALVQYDKAIE-QVRDS-PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~-~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
.-..+..++++.++.... +.++.+.+++..++ -.|.. ..+.+.++..+++.++|+.++.+.+..++..|++.++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 345677788888888655 46678899998886 44433 56778899999999999999999999999999887765
Q ss_pred HH
Q psy17412 118 LY 119 (240)
Q Consensus 118 ~~ 119 (240)
-.
T Consensus 109 ~L 110 (149)
T KOG3364|consen 109 EL 110 (149)
T ss_pred HH
Confidence 43
No 304
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.04 E-value=0.00099 Score=49.38 Aligned_cols=80 Identities=11% Similarity=0.202 Sum_probs=68.4
Q ss_pred CchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY-KARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
.++.+|...+..-.+.|-|.+--..|..+++.+|.+++.|.. -+.-+...++.+.+...|.++++.+|++|.+|..+-+
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 334448888887778888889999999999999999999987 4445778999999999999999999999999988765
Q ss_pred h
Q psy17412 236 A 236 (240)
Q Consensus 236 ~ 236 (240)
+
T Consensus 185 ~ 185 (435)
T COG5191 185 M 185 (435)
T ss_pred H
Confidence 4
No 305
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.04 E-value=0.011 Score=45.84 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=66.5
Q ss_pred HhHHHHhCCHHHHHHHHHHHHHhc--------CCC----------hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccH
Q psy17412 53 GNKAFQSGQYEAALVQYDKAIEQV--------RDS----------PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 114 (240)
Q Consensus 53 a~~~~~~~~~~~A~~~~~~a~~~~--------~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 114 (240)
|...+++++|..|..-|..++++. |.. ..+-..+..||+.+++.+.|+....+.|.++|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 444555566666665555555542 111 22455789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQL 140 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a 140 (240)
.-+...|.++..+.+|.+|...+--+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987665444
No 306
>KOG3364|consensus
Probab=97.01 E-value=0.0042 Score=40.23 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhc---ccCchhhHHHHHhh-cChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 161 LYTNRALTLLHLQ---LYDPVLPDCDKALR-LDED-NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 161 ~~~~la~~~~~~~---~~~~A~~~~~~~l~-~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
..+++++++.+.. +..+.+.+++..++ -.|. .-+..+.++..+.++|+|++++.+....++..|++.++..
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3788999888764 45678889999986 4554 4567889999999999999999999999999999988754
No 307
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.98 E-value=0.0011 Score=46.99 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=55.7
Q ss_pred HHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
...+.++.+.|.+.|.+++.+.|.+...|+.+|....+.|+.+.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445678899999999999999999999999999999999999999999999999999863
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.98 E-value=0.049 Score=36.16 Aligned_cols=84 Identities=14% Similarity=-0.039 Sum_probs=64.1
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHc
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSL 127 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 127 (240)
.+..........++.+++...+...--+.|+.+.+-..-|.++...|++.+|+..++...+..+..+.+.-.++.|+.-+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34444445555788888888888777788888888888888888888888888888888877777777777778887777
Q ss_pred CCHH
Q psy17412 128 GQRE 131 (240)
Q Consensus 128 ~~~~ 131 (240)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 7653
No 309
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.97 E-value=0.08 Score=41.79 Aligned_cols=143 Identities=13% Similarity=0.063 Sum_probs=100.0
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH-----HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV-----LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
.-.+...|.++.+++++++|.+.|.+..+...+++. ++.++-.--+-+++.+.-...+...-+..|..+......
T Consensus 6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~ 85 (549)
T PF07079_consen 6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFK 85 (549)
T ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 345667899999999999999999999887666533 333333333445566665555555556678888888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHH----HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKL----AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
|...++.+.+.+|++.+......-...... .+...-.+...-...+.++...|++.++...+++.+..
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999999999999999887766542221111 12222223334455688999999999999999988754
No 310
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.064 Score=43.58 Aligned_cols=133 Identities=15% Similarity=-0.009 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCCChHHHHH--HHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q psy17412 65 ALVQYDKAIEQVRDSPVLYTN--RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQ-LV 141 (240)
Q Consensus 65 A~~~~~~a~~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-a~ 141 (240)
++..+...+..+|.++..+.. +...+...+....+.-.+...+..+|++..+..+++......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666666666677777665332 466666677777788888888888888888888888877777766666655555 67
Q ss_pred HcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHH
Q psy17412 142 EKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202 (240)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 202 (240)
...|.+... ....+..+- ++.....+|+..++...+.++....|.++.+...+...
T Consensus 130 ~~~~~~~~~----~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDNAEF----LGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcchHHH----HhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 777776655 111112222 57777777888888888888888888876665555444
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.95 E-value=0.0022 Score=50.51 Aligned_cols=124 Identities=21% Similarity=0.254 Sum_probs=56.2
Q ss_pred HHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Q psy17412 57 FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEY 136 (240)
Q Consensus 57 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 136 (240)
...|+.-.|-.-...++...|..+......+.++..+|+|+.+...+..+-..-.....+...+-.....+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 34455555555555555555555554445555555555555555444333222222222333333444445555555555
Q ss_pred HHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 137 VRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
-+-.+.-.-++++. ...-+..--.+|-++++.-++++.+.++|.
T Consensus 380 a~~~l~~eie~~ei-----------~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 380 AEMMLSNEIEDEEV-----------LTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHhccccCChhh-----------eeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 44444433333332 222233333444555555555555555443
No 312
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.89 E-value=0.0016 Score=46.22 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=33.3
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc
Q psy17412 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 113 (240)
Q Consensus 56 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 113 (240)
....++.+.|.+.|.+++...|+....|+.+|....+.|+++.|...|.+.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445555555555555555555555555555555555555555555555555555544
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.85 E-value=0.021 Score=37.87 Aligned_cols=81 Identities=14% Similarity=-0.009 Sum_probs=50.9
Q ss_pred HHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHH
Q psy17412 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY 162 (240)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 162 (240)
+......-...++.+++...+...--+.|+.+.....-|.++...|+|.+|+..++...+-.+..+.. .
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~-----------k 81 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYG-----------K 81 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHH-----------H
Confidence 33444444556666666666666666667777766667777777777777777777766665554443 5
Q ss_pred HHHHHHHHHhcc
Q psy17412 163 TNRALTLLHLQL 174 (240)
Q Consensus 163 ~~la~~~~~~~~ 174 (240)
-.++.|+.-+|+
T Consensus 82 AL~A~CL~al~D 93 (153)
T TIGR02561 82 ALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHhcCC
Confidence 555566655554
No 314
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.79 E-value=0.051 Score=42.41 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=75.1
Q ss_pred HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CchH---------HH----HHhccCchHHHHHHHHH
Q psy17412 107 LRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP-----TRRK---------LA----IEQVRDSPVLYTNRALT 168 (240)
Q Consensus 107 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~---------~~----~~~~~~~~~~~~~la~~ 168 (240)
++.+|-+.+.+..++.++..+|+.+.|.+.+++|+-... .... .. .........+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 455677777778888888888888777777777764321 1100 00 00001112345666777
Q ss_pred HHHhcccCchhhHHHHHhhcChh-hHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 169 LLHLQLYDPVLPDCDKALRLDED-NMKAHLY-KARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 169 ~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
+.+.|-+..|+++.+-.+.++|. ++-.... +-....+.++++=-+..++.....
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Confidence 88889999999999999999998 6655444 444456677887777777765543
No 315
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.64 E-value=0.37 Score=41.37 Aligned_cols=168 Identities=17% Similarity=0.082 Sum_probs=102.2
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCc----c--cH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDE----D--NM 114 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~--~~ 114 (240)
+...-..|.+....|++++|+++.+.++..-|.+ ..+...+|.+..-.|++++|..+...+.+... . ..
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~ 537 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLAL 537 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 3444556778888889999999988888876654 44677788888888899998888888776532 1 12
Q ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHc----CCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 115 KAHLYKARAMHSLGQ--REEAKEYVRQLVEK----YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 115 ~~~~~la~~~~~~~~--~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
.+....+.++..+|+ +.+....+...-.. .|.+... ....+.++...-+++.+.......++.
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~-----------~~~r~~ll~~~~r~~~~~~ear~~~~~ 606 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL-----------VRIRAQLLRAWLRLDLAEAEARLGIEV 606 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH-----------HHHHHHHHHHHHHHhhhhHHhhhcchh
Confidence 344455677777772 33333333322221 2221111 223333333333355555444444433
Q ss_pred ----Chh--hHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 189 ----DED--NMK-AHLYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 189 ----~~~--~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
.|. ... ..+.++.+....|+.++|...+.+......
T Consensus 607 ~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 607 GSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 232 222 235899999999999999999988776543
No 316
>KOG1258|consensus
Probab=96.62 E-value=0.3 Score=39.98 Aligned_cols=155 Identities=14% Similarity=-0.056 Sum_probs=117.0
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQ-VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
-.+.|+..+......|+.+-|-..+..+.+. .|+.+.+...-+..-...|++..|...+++..+..|+...+-......
T Consensus 330 Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~ 409 (577)
T KOG1258|consen 330 YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINW 409 (577)
T ss_pred hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhH
Confidence 4567888888888889999999888888776 466677777788888889999999999999998889999888888889
Q ss_pred HHHcCCHHHHHH---HHHHHHHcCCCchHHHHHhccCchHHHHHHHHH-HHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 124 MHSLGQREEAKE---YVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALT-LLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 124 ~~~~~~~~~A~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
..+.|+.+.+.. .+.....-..+ ... ....+...+.. +.-.++.+.|...+.+++...|.+...+..+
T Consensus 410 e~r~~~~~~~~~~~~l~s~~~~~~~~-~~i-------~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~ 481 (577)
T KOG1258|consen 410 ERRKGNLEDANYKNELYSSIYEGKEN-NGI-------LEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLEL 481 (577)
T ss_pred HHHhcchhhhhHHHHHHHHhcccccC-cch-------hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHH
Confidence 999999998884 33222221111 111 12334555543 3345788999999999999999998888888
Q ss_pred HHHHHHcC
Q psy17412 200 ARAMHNLG 207 (240)
Q Consensus 200 a~~~~~~g 207 (240)
..+....+
T Consensus 482 ~~~~~~~~ 489 (577)
T KOG1258|consen 482 IRFELIQP 489 (577)
T ss_pred HHHHHhCC
Confidence 77766655
No 317
>KOG0985|consensus
Probab=96.61 E-value=0.064 Score=46.62 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=104.2
Q ss_pred hHhHHHHhCCHHHHHHHHHHH------HHh----------------cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc
Q psy17412 52 NGNKAFQSGQYEAALVQYDKA------IEQ----------------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 109 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a------~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 109 (240)
+|.+....+-|++|...|++. ++. .-+.+.+|..+|.+..+.|...+|++.|-++
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 455556666677777666642 111 1134789999999999999999999999776
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----H---------HHhc--cCchHHHHHHHHHHHHhc
Q psy17412 110 DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----A---------IEQV--RDSPVLYTNRALTLLHLQ 173 (240)
Q Consensus 110 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~---------~~~~--~~~~~~~~~la~~~~~~~ 173 (240)
+++..|........+.|.|++-+.++..+.+...+.... + ++.+ ..+..-....|.-++..|
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhh
Confidence 567778888899999999999999998887754432110 0 0000 011112334455555556
Q ss_pred ccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 174 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 174 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
.|+.|.-.|. +..-|..++..+..+|+|..|...-+++-
T Consensus 1209 ~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1209 MYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred hhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6655544432 35567888899999999999998877663
No 318
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.59 E-value=0.009 Score=47.26 Aligned_cols=110 Identities=13% Similarity=0.109 Sum_probs=83.5
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
.....+..+......+.+....|+|+.+...+..+-..-.........+-.....+|++++|.....-.+.-.-.++++.
T Consensus 315 ~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~ 394 (831)
T PRK15180 315 ALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVL 394 (831)
T ss_pred HHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhhe
Confidence 34455666777777788888899999998888766555444445555666777888999999888888887666677776
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
..-+.....+|-++++..++++.+.++|..
T Consensus 395 ~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 395 TVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred eeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 666677778888999999999999888763
No 319
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.56 E-value=0.21 Score=37.56 Aligned_cols=121 Identities=18% Similarity=0.169 Sum_probs=66.2
Q ss_pred HHhCCHHHHHHHHHHHHHhc----CCC----hHHHHHHHHHHHHcc-CcCchHHHHHHHHhcC----c------c----c
Q psy17412 57 FQSGQYEAALVQYDKAIEQV----RDS----PVLYTNRALTLLHLQ-LYDPVLPDCDKALRLD----E------D----N 113 (240)
Q Consensus 57 ~~~~~~~~A~~~~~~a~~~~----~~~----~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~----~------~----~ 113 (240)
..+|+++.|..++.++-... |+. ...+++.|......+ +++.|...++++.+.- + + .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45677777777777765543 221 345666666666677 7777777777776551 1 1 1
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 114 MKAHLYKARAMHSLGQRE---EAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~---~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
..++..++.++...+.++ +|...++.+-.-.|+.+.. +...-.+..+.++.+.+.+.+.+++..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~-----------~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV-----------FLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH-----------HHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 224556666666665544 3333444444444444433 433333333456666666666666554
No 320
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.12 Score=42.05 Aligned_cols=89 Identities=16% Similarity=-0.050 Sum_probs=68.9
Q ss_pred hHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHH-HHhcCcccHHHHHHHHHHHHHcCCH
Q psy17412 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK-ALRLDEDNMKAHLYKARAMHSLGQR 130 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~ 130 (240)
+.......+....+.-.+..++..+|....+..+++......|....+...+.. +....|.+......+-.++. .+++
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~ 151 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQ-LGRY 151 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHH-HHHH
Confidence 466666778888888888999999999999999999888887776666655544 78888888888777777777 8888
Q ss_pred HHHHHHHHHHH
Q psy17412 131 EEAKEYVRQLV 141 (240)
Q Consensus 131 ~~A~~~~~~a~ 141 (240)
-+++..-.++.
T Consensus 152 ~~~l~~~~~~~ 162 (620)
T COG3914 152 LKLLGRTAEAE 162 (620)
T ss_pred HHHhccHHHHH
Confidence 87766555443
No 321
>KOG2581|consensus
Probab=96.48 E-value=0.16 Score=39.55 Aligned_cols=129 Identities=17% Similarity=0.140 Sum_probs=90.9
Q ss_pred HHccCcCchHHHHHHHHhcC---------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CchHHHHHhccCc
Q psy17412 91 LHLQLYDPVLPDCDKALRLD---------EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP---TRRKLAIEQVRDS 158 (240)
Q Consensus 91 ~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~ 158 (240)
+..+++++|...-+..+..- --....|+.+..++...|+...-...+...+.... +... .
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~--------q 208 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEG--------Q 208 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchh--------H
Confidence 34578888887776655321 11245788888888888887666666655554321 1111 2
Q ss_pred hHHHHHHHHHHHHhcccCchhhHHHHHhh----cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 159 PVLYTNRALTLLHLQLYDPVLPDCDKALR----LDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
+.+.+.+-..|...+.|+.|-....+..- .+...+...+.+|.+..-+++|..|.+++-+++...|.+.
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 34566777888899999999888777651 1123467788999999999999999999999999999753
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.44 E-value=0.012 Score=29.66 Aligned_cols=29 Identities=34% Similarity=0.277 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
.++.++|.++..+|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788899999999999999999988865
No 323
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.41 E-value=0.012 Score=29.71 Aligned_cols=30 Identities=30% Similarity=0.232 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKY 144 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 144 (240)
.++.++|.++..+|++++|..++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 567889999999999999999999988754
No 324
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.36 E-value=0.52 Score=39.84 Aligned_cols=169 Identities=15% Similarity=0.029 Sum_probs=110.7
Q ss_pred hHHHHHHHhHhHHH-HhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc----
Q psy17412 44 DIADHFKANGNKAF-QSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED---- 112 (240)
Q Consensus 44 ~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---- 112 (240)
..+...+.+|.+++ ...+++.|..++.+++.....+ ..+...++.++.+.+... |...+++.++....
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 46788889999988 7889999999999998876432 224456788888888777 99999999876544
Q ss_pred cHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHcCC--CchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 113 NMKAHLYK--ARAMHSLGQREEAKEYVRQLVEKYP--TRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 113 ~~~~~~~l--a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
.....+.+ .......+++..|+..++.+..... .++.. ........+.+....+..+++++.+.++...
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~-------~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~ 208 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV-------FVLASLSEALLHLRRGSPDDVLELLQRAIAQ 208 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH-------HHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 12222222 2233334799999999999988763 33322 0112333455566667778888888877432
Q ss_pred C----------hhhHHHHHHHHH--HHHHcCCHHHHHHHHHHHH
Q psy17412 189 D----------EDNMKAHLYKAR--AMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 189 ~----------~~~~~~~~~la~--~~~~~g~~~~A~~~~~~~~ 220 (240)
. +....++..+-. ++...|+++.+...+++.-
T Consensus 209 ~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 209 ARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 123445554444 4567788777776655443
No 325
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.36 E-value=0.3 Score=42.94 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=67.5
Q ss_pred hHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHcc-------CcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 52 NGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQ-------LYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
...++...+.|++|+..|++.-...|+. -++.+..|......- .+++|+..|++... .|.-|--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH
Confidence 3456667778888888888888888765 345666666655432 34555555555432 344556677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
.+|..+|++++-++++.-+++..|++|..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 88888888888888888888888887765
No 326
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.30 E-value=0.0073 Score=44.99 Aligned_cols=83 Identities=10% Similarity=0.166 Sum_probs=69.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy17412 69 YDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY-KARAMHSLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 69 ~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
|.++....|+++..|...+..-.+.|.+.+-...|..++...|.+++.|.. .+.-+...++++.+...+.++++.+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 344445567888899888888888888999999999999999999998877 4455677899999999999999999998
Q ss_pred hHHH
Q psy17412 148 RKLA 151 (240)
Q Consensus 148 ~~~~ 151 (240)
+..+
T Consensus 176 p~iw 179 (435)
T COG5191 176 PRIW 179 (435)
T ss_pred chHH
Confidence 8873
No 327
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.027 Score=41.33 Aligned_cols=73 Identities=19% Similarity=0.132 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
....++-..+...++++.|....++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++.-|+++.+-..
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 3456666778889999999999999999999999999999999999999999999999999999998765443
No 328
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.24 E-value=0.039 Score=43.03 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=78.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-------HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 190 (240)
..=|..++++++|..|..-|..++++..+-... .-+...-...+-..+..||.++++.+-|+....+.+.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 334667889999999999999998875432211 0000011234567789999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 191 DNMKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 191 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
.....+...|.++..+.+|.+|-.-+.-+.
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887665443
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.19 E-value=0.39 Score=38.73 Aligned_cols=129 Identities=18% Similarity=0.049 Sum_probs=75.7
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQ 129 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 129 (240)
...+..+.++|-.+.|+..- .++...+.+ ..+.|+.+.|.+..++ .+++..|..+|.....+|+
T Consensus 299 ~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 299 QSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCC
Confidence 34455555666666666553 334555444 4677888877665433 2467799999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCH
Q psy17412 130 REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQR 209 (240)
Q Consensus 130 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 209 (240)
++-|..+|+++- + +..+..+|.-.|+.+.=.+..+.+......+ ..-.+++.+|+.
T Consensus 363 ~~lAe~c~~k~~----d---------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n-----~af~~~~~lgd~ 418 (443)
T PF04053_consen 363 IELAEECYQKAK----D---------------FSGLLLLYSSTGDREKLSKLAKIAEERGDIN-----IAFQAALLLGDV 418 (443)
T ss_dssp HHHHHHHHHHCT--------------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HH-----HHHHHHHHHT-H
T ss_pred HHHHHHHHHhhc----C---------------ccccHHHHHHhCCHHHHHHHHHHHHHccCHH-----HHHHHHHHcCCH
Confidence 999999998753 2 6677777777787644444444433322211 111344456666
Q ss_pred HHHHHHHHH
Q psy17412 210 EEAKEYIRE 218 (240)
Q Consensus 210 ~~A~~~~~~ 218 (240)
++.++.+.+
T Consensus 419 ~~cv~lL~~ 427 (443)
T PF04053_consen 419 EECVDLLIE 427 (443)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665544
No 330
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.059 Score=39.66 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=61.7
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
...++=..+...++++.|....++.+..+|.++.-+...|.+|.++|.+..|++.+...++..|+.+.+-.....
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 334455567788899999999999999999999888899999999999999999999999888888766544433
No 331
>KOG0890|consensus
Probab=96.16 E-value=0.3 Score=46.35 Aligned_cols=64 Identities=13% Similarity=-0.000 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 158 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 158 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
....|...|++....|+++.|...+-++.+.. -+.+....|..++..|+...|+..+++.++.+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 45788899999999999999999998888776 46788999999999999999999999999654
No 332
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.10 E-value=0.26 Score=33.85 Aligned_cols=123 Identities=13% Similarity=0.069 Sum_probs=73.9
Q ss_pred HccCcCchHHHHHHHHhcCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHH
Q psy17412 92 HLQLYDPVLPDCDKALRLDEDN--MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL 169 (240)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 169 (240)
+.+..++|+..|...-+-.-.. .-+.+..|.+..+.|+-..|+..|..+-.-.|- |.. .. -.....-+.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~-~r-----d~ARlraa~lL 142 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQI-GR-----DLARLRAAYLL 142 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cch-hh-----HHHHHHHHHHH
Confidence 3455666666666655433222 235566677777778888888887776654432 211 00 01144455666
Q ss_pred HHhcccCchhhHHHHH-hhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 170 LHLQLYDPVLPDCDKA-LRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 170 ~~~~~~~~A~~~~~~~-l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
+..|-|++...-.+.. -..+|-...+.-.+|..-++.|++.+|..+|.++..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777777665555443 233454566667777777888888888888877665
No 333
>KOG3616|consensus
Probab=96.01 E-value=0.15 Score=42.97 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=36.7
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHH------HHh----cCCC-hHHHHHHHHHHHHccCcCchHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKA------IEQ----VRDS-PVLYTNRALTLLHLQLYDPVLPDCDKA 106 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a------~~~----~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~ 106 (240)
.+.+-..|..+.+..++++|+++|++. +++ .|.. ...-...|.-..+.|+++.|+..|-.+
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 344555667777777888888888753 332 2322 122234466666778888877776543
No 334
>KOG0529|consensus
Probab=95.97 E-value=0.58 Score=36.67 Aligned_cols=173 Identities=13% Similarity=0.137 Sum_probs=119.7
Q ss_pred hHHHHhCCHH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHc------------cCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 54 NKAFQSGQYE-AALVQYDKAIEQVRDSPVLYTNRALTLLHL------------QLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 54 ~~~~~~~~~~-~A~~~~~~a~~~~~~~~~~~~~la~~~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
......|.++ ++++.-.+.+..+|+...+|...-.++... .-.++-+.+...++..+|+...+|..+
T Consensus 36 ~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR 115 (421)
T KOG0529|consen 36 QKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHR 115 (421)
T ss_pred HHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHH
Confidence 3344455554 577777788888998877776544444322 134556677788889999999999999
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh----cccCchhhHHHHHhhcChhhHH
Q psy17412 121 ARAMHSLG--QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL----QLYDPVLPDCDKALRLDEDNMK 194 (240)
Q Consensus 121 a~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~l~~~~~~~~ 194 (240)
..++.+.+ ++..=+...+++++.+|.+... |...=.+.... ....+=+++.++++..++.+..
T Consensus 116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~-----------W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYs 184 (421)
T KOG0529|consen 116 KWVLQKNPHSDWNTELQLCEKALKQDPRNFHA-----------WHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYS 184 (421)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhcCcccccc-----------hHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhh
Confidence 99998776 4678889999999999987665 44443333322 2245557788899988999999
Q ss_pred HHHHHHHHHHH------cCC------HHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 195 AHLYKARAMHN------LGQ------REEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 195 ~~~~la~~~~~------~g~------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
+|.....++-. .|+ ...-+..-..++-.+|++..+|....-++
T Consensus 185 aWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl 239 (421)
T KOG0529|consen 185 AWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL 239 (421)
T ss_pred HHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence 99888777652 332 12344556667778899988887654443
No 335
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=0.31 Score=33.48 Aligned_cols=144 Identities=13% Similarity=-0.001 Sum_probs=98.6
Q ss_pred HhHhHHHHhCCHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHccCcCchHHHHHHHHhcCc--cc--HHHHHHHHHHH
Q psy17412 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDS--PVLYTNRALTLLHLQLYDPVLPDCDKALRLDE--DN--MKAHLYKARAM 124 (240)
Q Consensus 51 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~--~~~~~~la~~~ 124 (240)
..+..+.+.+..++|+.-|...-+.+-.. ..+....|.+..+.|+...|+..|..+-...| .- ..+...-+.++
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence 34445555666777777776665543322 45677888899999999999999999876543 22 23556667788
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHH
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 204 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 204 (240)
...|.|++-....+..-. +.++ -.....-.||..-++.|++..|.++|..... +...+....+.+.+.+
T Consensus 143 vD~gsy~dV~srvepLa~--d~n~--------mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAG--DGNP--------MRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred hccccHHHHHHHhhhccC--CCCh--------hHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 889999987766654321 2222 1234478899999999999999999999877 4445556666666554
Q ss_pred H
Q psy17412 205 N 205 (240)
Q Consensus 205 ~ 205 (240)
.
T Consensus 212 d 212 (221)
T COG4649 212 D 212 (221)
T ss_pred H
Confidence 3
No 336
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.88 E-value=0.13 Score=31.62 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
+...+|.+....|++++|+..+++++++...
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665443
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.87 E-value=0.38 Score=33.90 Aligned_cols=83 Identities=10% Similarity=-0.010 Sum_probs=59.4
Q ss_pred HHHHccCcCchHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHH
Q psy17412 89 TLLHLQLYDPVLPDCDKALRLD-EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL 167 (240)
Q Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 167 (240)
.++....-+.|...|-++-... -+++...+.+|..|. ..+.++++..+.+++++.+.+... +++++..++.
T Consensus 115 y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~-------n~eil~sLas 186 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNF-------NPEILKSLAS 186 (203)
T ss_pred HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCC-------CHHHHHHHHH
Confidence 3444444556666665544322 256778888887776 678899999999999988765322 4667999999
Q ss_pred HHHHhcccCchh
Q psy17412 168 TLLHLQLYDPVL 179 (240)
Q Consensus 168 ~~~~~~~~~~A~ 179 (240)
++.+.|+++.|.
T Consensus 187 ~~~~~~~~e~AY 198 (203)
T PF11207_consen 187 IYQKLKNYEQAY 198 (203)
T ss_pred HHHHhcchhhhh
Confidence 999999998874
No 338
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.79 E-value=0.76 Score=36.67 Aligned_cols=167 Identities=12% Similarity=0.017 Sum_probs=102.4
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc--------C----
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--------D---- 110 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~---- 110 (240)
+-.++.|+.-.......++-+.|+....+++...|. ....++.+|...++-+..-.+|+++++- +
T Consensus 299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~ 375 (660)
T COG5107 299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESA 375 (660)
T ss_pred hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhh
Confidence 334566666666666777888888887777766655 5556777776666666555666655421 0
Q ss_pred ---cccH----H-----------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHH-HHHH
Q psy17412 111 ---EDNM----K-----------AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL-TLLH 171 (240)
Q Consensus 111 ---~~~~----~-----------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~-~~~~ 171 (240)
.+++ + +|+..-....+..-.+.|...|-++-+..-.... ++..-|. -+..
T Consensus 376 s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~-----------vyi~~A~~E~~~ 444 (660)
T COG5107 376 SKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH-----------VYIYCAFIEYYA 444 (660)
T ss_pred ccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc-----------eeeeHHHHHHHh
Confidence 0111 1 1111222223334455566666666554312111 1333332 3455
Q ss_pred hcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 172 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
.|++.-|...|+-.+...|+++-.....-..++..++-+.|...|++++..-
T Consensus 445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~ 496 (660)
T COG5107 445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERL 496 (660)
T ss_pred cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH
Confidence 7899999999999999999887766666677788899999999998777543
No 339
>KOG2422|consensus
Probab=95.73 E-value=0.81 Score=37.54 Aligned_cols=140 Identities=14% Similarity=0.027 Sum_probs=91.5
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh-----c----------------CCChH---HHHHHHHHHHHccC
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ-----V----------------RDSPV---LYTNRALTLLHLQL 95 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~----------------~~~~~---~~~~la~~~~~~~~ 95 (240)
...|-+.+.++.++.+...+|+.+.|.....+++=. . |.+-. +.+..-....+.|-
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC 357 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 346889999999999999999999988888887643 1 12221 22233344456789
Q ss_pred cCchHHHHHHHHhcCcc-cHHHHHHHHHHH-HHcCCHHHHHHHHHHH-----HHcCCCchHHHHHhccCchHHHHHHHHH
Q psy17412 96 YDPVLPDCDKALRLDED-NMKAHLYKARAM-HSLGQREEAKEYVRQL-----VEKYPTRRKLAIEQVRDSPVLYTNRALT 168 (240)
Q Consensus 96 ~~~A~~~~~~~~~~~~~-~~~~~~~la~~~-~~~~~~~~A~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~~~~la~~ 168 (240)
+..|.++++-.++++|. ++-+...+...| .+..+|+=-+..++.. +...|+... -..+|..
T Consensus 358 ~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~y------------S~AlA~f 425 (665)
T KOG2422|consen 358 WRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGY------------SLALARF 425 (665)
T ss_pred hHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchH------------HHHHHHH
Confidence 99999999999999998 776555555444 4445565555555443 223343211 2344455
Q ss_pred HHHhcc---cCchhhHHHHHhhcChh
Q psy17412 169 LLHLQL---YDPVLPDCDKALRLDED 191 (240)
Q Consensus 169 ~~~~~~---~~~A~~~~~~~l~~~~~ 191 (240)
|..... -..|...+.+|++..|.
T Consensus 426 ~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 426 FLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 554433 35678888888888773
No 340
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.71 E-value=0.065 Score=39.89 Aligned_cols=63 Identities=22% Similarity=0.172 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
.++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 447888999999999999999999999999999999999999999999999999999988763
No 341
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.68 E-value=0.039 Score=41.36 Aligned_cols=62 Identities=21% Similarity=0.057 Sum_probs=50.5
Q ss_pred hhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 178 VLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 178 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
|..+|.+|..+.|++...+..+|.++...|+.-.|+-+|-+++-.....+.+..++..++++
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999887665568888888877754
No 342
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.68 E-value=0.074 Score=26.02 Aligned_cols=32 Identities=16% Similarity=-0.007 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q psy17412 194 KAHLYKARAMHNLGQREEAKEY--IRELVEKYPT 225 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~--~~~~~~~~p~ 225 (240)
+.+..+|..+...|++++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4567778888888888888888 4466666654
No 343
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.65 E-value=0.1 Score=45.72 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=78.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh-------cccCchhhHHHHHhhcChhh
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL-------QLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-------~~~~~A~~~~~~~l~~~~~~ 192 (240)
...++...+.|+.|+..|++.-...|...+. .++.+..|...... ..+++|+..|++... .|.-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 551 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEG--------YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGA 551 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccc--------hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCC
Confidence 3456778889999999999999999876544 34467777666543 245666666665433 4555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLV 230 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 230 (240)
+--|...|.+|..+|++++-++.+.-+++..|.+|.+-
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 552 PLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred chHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 66788999999999999999999999999999988753
No 344
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.63 E-value=0.14 Score=38.15 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 62 YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLV 141 (240)
Q Consensus 62 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 141 (240)
|..-+....++++. ....++..++..+...|+++.+.+.++..+..+|.+...|..+-..|...|+...|+..|++.-
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 55555555555543 2356677777788888888888888888888888877788888888888888888888887776
Q ss_pred Hc
Q psy17412 142 EK 143 (240)
Q Consensus 142 ~~ 143 (240)
+.
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 64
No 345
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.57 E-value=0.17 Score=29.66 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHh
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL 186 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 186 (240)
....|.-++...+.++|+..++++++..++.++. ..++-.+..++...|+|.+.+.+..+-+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~r--------f~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDR--------FRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566677777777777777776665544 3334455556666777766666544433
No 346
>KOG3616|consensus
Probab=95.56 E-value=0.45 Score=40.34 Aligned_cols=119 Identities=18% Similarity=0.047 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHH
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (240)
.|-.++.-|...|+|+.|.+.|.++-. ...-...|-+.|+|.+|.+.-+++.. |+.. ...
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~~--~e~t----------~~~ 826 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECHG--PEAT----------ISL 826 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhcC--chhH----------HHH
Confidence 445667777777777777777765421 11223455566777776666555432 2211 112
Q ss_pred HHHHHHHHHHhc-------------ccCchhhHHHHHhh----------cChh-hHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 162 YTNRALTLLHLQ-------------LYDPVLPDCDKALR----------LDED-NMKAHLYKARAMHNLGQREEAKEYIR 217 (240)
Q Consensus 162 ~~~la~~~~~~~-------------~~~~A~~~~~~~l~----------~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 217 (240)
|...+.-+-+.| ..+.|+..|++.-. ..|+ -.+....+|.-+...|+...|...|-
T Consensus 827 yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 827 YIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 333333333334 44445555544211 1222 14566778888889999999888776
Q ss_pred HHH
Q psy17412 218 ELV 220 (240)
Q Consensus 218 ~~~ 220 (240)
++-
T Consensus 907 ea~ 909 (1636)
T KOG3616|consen 907 EAG 909 (1636)
T ss_pred hhh
Confidence 553
No 347
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.52 E-value=0.072 Score=32.73 Aligned_cols=57 Identities=19% Similarity=0.150 Sum_probs=45.4
Q ss_pred HHHhcccCchhhHHHHHhhcChh---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 169 LLHLQLYDPVLPDCDKALRLDED---------NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 169 ~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
..+.|+|..|++.+.+.+..... ...+..++|.+....|++++|+..+++++++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 35679999998888888765332 2456788999999999999999999999987543
No 348
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.50 E-value=0.082 Score=25.88 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=20.4
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHH--HHHHhcCC
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYD--KAIEQVRD 78 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~--~a~~~~~~ 78 (240)
+.++.+|..+..+|++++|++.|+ -+...++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 456667777777888888887733 55555443
No 349
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=95.45 E-value=0.026 Score=25.27 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIR 217 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~ 217 (240)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677788888888888877664
No 350
>KOG1839|consensus
Probab=95.44 E-value=0.12 Score=45.95 Aligned_cols=145 Identities=14% Similarity=0.175 Sum_probs=105.8
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc---
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ--------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--- 109 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--- 109 (240)
..+..+..+..++..+...+++++|+..-.++.-. .|+....+.+++...+..++...|+..+.++..+
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 46778899999999999999999999998887654 2445667888998899999999999999888754
Q ss_pred -----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHH
Q psy17412 110 -----DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 184 (240)
Q Consensus 110 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 184 (240)
.|.......+++.++...++++.|+.+.+.|......-.. ...-.....+..++..+...+++..|+...+.
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g---~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG---PKELETALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC---ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 3555567788899999999999999999999985432111 00011234455666666666666666655555
Q ss_pred Hhhc
Q psy17412 185 ALRL 188 (240)
Q Consensus 185 ~l~~ 188 (240)
...+
T Consensus 1125 t~~i 1128 (1236)
T KOG1839|consen 1125 TYGI 1128 (1236)
T ss_pred HHHH
Confidence 4433
No 351
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.42 E-value=1.4 Score=37.31 Aligned_cols=121 Identities=12% Similarity=0.013 Sum_probs=75.8
Q ss_pred CchHHHHHHHHhcC---c-ccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH
Q psy17412 97 DPVLPDCDKALRLD---E-DNMKAHLYKARAMH-SLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171 (240)
Q Consensus 97 ~~A~~~~~~~~~~~---~-~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 171 (240)
..|+.+++.+++.. | ..+.+.+.+|.+++ ...+++.|..++++++.+...+.-. .........++.++.+
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~-----d~k~~~~~ll~~i~~~ 112 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT-----DLKFRCQFLLARIYFK 112 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH-----HHHHHHHHHHHHHHHh
Confidence 34566666666322 2 13457888888776 7789999999999998877542111 0012234556777877
Q ss_pred hcccCchhhHHHHHhhcChh----hHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 172 LQLYDPVLPDCDKALRLDED----NMKAHLYK--ARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 172 ~~~~~~A~~~~~~~l~~~~~----~~~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
.+... |...+++.++...+ .....+.+ .......+++..|++.++......
T Consensus 113 ~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 113 TNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred cCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 77666 88888888876544 12222222 223333478888999888887765
No 352
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.40 E-value=1.1 Score=35.85 Aligned_cols=50 Identities=8% Similarity=-0.125 Sum_probs=41.7
Q ss_pred HHHHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHH
Q psy17412 36 FEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTN 85 (240)
Q Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 85 (240)
-+..+++|.+...|+.+-..+-.+|.+++-.+.|++...-.|-.+.+|..
T Consensus 32 RerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~l 81 (660)
T COG5107 32 RERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRL 81 (660)
T ss_pred HHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHH
Confidence 34567899999999999999999999999999999998877765555543
No 353
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.35 E-value=0.044 Score=27.20 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=19.4
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
+++..+|.+....++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556677777777777777777776654
No 354
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.30 E-value=1.7 Score=37.60 Aligned_cols=124 Identities=14% Similarity=0.068 Sum_probs=92.9
Q ss_pred ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchH
Q psy17412 79 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED---------NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRK 149 (240)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 149 (240)
++......++.....+++.+|...+.++...-+. .....-..|.+....|++++|++..+.++..-|.+..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3555666788888899999999888887654332 1234556788889999999999999999998887544
Q ss_pred HHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh------hHHHHHHHHHHHHHcCC
Q psy17412 150 LAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED------NMKAHLYKARAMHNLGQ 208 (240)
Q Consensus 150 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~ 208 (240)
. .....+..+|.+..-.|++++|..+...+.+.... ...+....+.++..+|+
T Consensus 494 ~------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 494 R------SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred h------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 3 33455788899999999999999999888776332 23344566778888883
No 355
>KOG1464|consensus
Probab=95.27 E-value=0.69 Score=34.33 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHccCcCchHHHHHHHH
Q psy17412 60 GQYEAALVQYDKAIEQVRDSP----VLYTNRALTLLHLQLYDPVLPDCDKAL 107 (240)
Q Consensus 60 ~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~ 107 (240)
.+.++|+.-|+++++..+... .++-.+..+++.++++++-.+.|.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 356666666777666655432 244455566666666666666665554
No 356
>KOG0546|consensus
Probab=95.21 E-value=0.079 Score=40.36 Aligned_cols=104 Identities=26% Similarity=0.330 Sum_probs=85.3
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcC-----------C--------ChHHHHHHHHHHHHccCcCchHHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVR-----------D--------SPVLYTNRALTLLHLQLYDPVLPDCDKAL 107 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----------~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 107 (240)
...-..|...+..++++.|..-|.++..... + ......+++.+-+..+.+..|+.....++
T Consensus 223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~ 302 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL 302 (372)
T ss_pred hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence 3444567777888888888888888765421 1 12355678888899999999999988888
Q ss_pred hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 108 RLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 108 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
..++....+++.++..+....++++|+..++.+....|++...
T Consensus 303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 8888889999999999999999999999999999999998766
No 357
>KOG0546|consensus
Probab=95.17 E-value=0.063 Score=40.87 Aligned_cols=115 Identities=18% Similarity=0.121 Sum_probs=85.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC---CchHH-HHH----hccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYP---TRRKL-AIE----QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~-~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
.+.-.++.+++..|..-+.+++..-. .+... ..+ .......+..+++.+-.+.+.+..|+.....++..++.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s 307 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS 307 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence 44556777777777777777665322 11000 000 11122345777889999999999999998888888999
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 192 NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
...+++..+..+..+.++++|.+.++.+....|++..+...+.
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~ 350 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELE 350 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHH
Confidence 9999999999999999999999999999999999987765544
No 358
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.07 E-value=0.057 Score=26.79 Aligned_cols=30 Identities=13% Similarity=-0.102 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKY 144 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 144 (240)
+++..+|.+-...++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 456778888888888888888888887753
No 359
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=95.05 E-value=0.17 Score=26.00 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
+.+|.+|+.+|+.+.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677888888888888888888874
No 360
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=95.03 E-value=0.041 Score=24.65 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVR 138 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~ 138 (240)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45666777777777777766654
No 361
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.94 E-value=0.16 Score=37.83 Aligned_cols=60 Identities=17% Similarity=0.096 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
.....+..|...|.+.+|++..++++.++|-+...+..+-.++..+|+.-.++++|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 355567788899999999999999999999999999999999999999999988887654
No 362
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=94.92 E-value=0.11 Score=24.22 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 207 GQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 207 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
|+.+.|...|++++...|.++.+|..+....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4667788888888888888888887776653
No 363
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.83 E-value=0.16 Score=38.04 Aligned_cols=62 Identities=15% Similarity=-0.052 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17412 65 ALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126 (240)
Q Consensus 65 A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 126 (240)
|..+|.+|+...|+.+..+..+|.++...|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999987665567788888877776
No 364
>KOG0890|consensus
Probab=94.52 E-value=1.2 Score=42.63 Aligned_cols=107 Identities=17% Similarity=0.139 Sum_probs=84.0
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-cc--------
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-ED-------- 112 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~-------- 112 (240)
+...++.|.+.|.+....|.++.|...+-.|.+.. -+.+....|...+..|+...|+..+++.++.+ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 56789999999999999999999999999988876 56789999999999999999999999999665 22
Q ss_pred --c------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCchHH
Q psy17412 113 --N------MKAHLYKARAMHSLGQR--EEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 113 --~------~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~ 150 (240)
. ..+....+......+++ .+-+..|+.+..+.|...+.
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~ 1791 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDK 1791 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCc
Confidence 1 11334444444455553 34678889999999976555
No 365
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.49 E-value=0.46 Score=33.54 Aligned_cols=76 Identities=16% Similarity=-0.014 Sum_probs=57.1
Q ss_pred HhCCHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc----cHHHHHHHHHHHHHcCCHHH
Q psy17412 58 QSGQYEAALVQYDKAIEQV-RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED----NMKAHLYKARAMHSLGQREE 132 (240)
Q Consensus 58 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~ 132 (240)
.+..=+.|.+.|-++-... -+++...+.+|..|. ..+.++++..+.+++++.+. +++++..++.++..+|+++.
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3334456666665543321 245788888887776 67889999999999988643 58899999999999999998
Q ss_pred HH
Q psy17412 133 AK 134 (240)
Q Consensus 133 A~ 134 (240)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 366
>KOG0529|consensus
Probab=94.49 E-value=1.9 Score=33.98 Aligned_cols=130 Identities=16% Similarity=0.216 Sum_probs=91.4
Q ss_pred chHHHHHHHHhcCcccHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHH
Q psy17412 98 PVLPDCDKALRLDEDNMKAHLYKARAM------------HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165 (240)
Q Consensus 98 ~A~~~~~~~~~~~~~~~~~~~~la~~~------------~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 165 (240)
++++.-.+.+..+|+...+|...-.++ ..+.-+++-+.....+++.+|++..+ |..+
T Consensus 47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~a-----------W~hR 115 (421)
T KOG0529|consen 47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGA-----------WHHR 115 (421)
T ss_pred HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHH-----------HHHH
Confidence 445555666677777665554332221 22234667778888899999998777 9999
Q ss_pred HHHHHHhcc--cCchhhHHHHHhhcChhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 166 ALTLLHLQL--YDPVLPDCDKALRLDEDNMKAHLYKARAMHNL----GQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 166 a~~~~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
..++.+.+. +..=+..++++++.+|.+..+|...-.+.... ....+-+++..+++..++.|-.+|..-..++.
T Consensus 116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 116 KWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 999987754 56778899999999999877775544443332 23567778889999889988888877665553
No 367
>KOG3807|consensus
Probab=94.37 E-value=1.8 Score=33.24 Aligned_cols=177 Identities=21% Similarity=0.127 Sum_probs=97.6
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc-----------------
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE----------------- 111 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----------------- 111 (240)
-+.+-....+..+..+-++.-..+++++|..+.++..++.-- ..-..+|...++++++...
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~d 264 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHE 264 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchh
Confidence 344445566667777778888888888888877776665422 2223445555555553210
Q ss_pred ------ccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHH
Q psy17412 112 ------DNMK--AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD 183 (240)
Q Consensus 112 ------~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (240)
.+.. ....++.|..++|+..+|++.++...+-.|-.... .+.-++-..+....-|.+....+-
T Consensus 265 a~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~l---------niheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 265 AQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTML---------NIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred hhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112 34568899999999999999999988877743222 223344444444333333322222
Q ss_pred HHhhc-ChhhHHHHHHHH-------------HHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 184 KALRL-DEDNMKAHLYKA-------------RAMHNLGQ---REEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 184 ~~l~~-~~~~~~~~~~la-------------~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+.-++ -|....+.+.-+ ....+.|- -..|++.+.++++.+|.-|.....+..+
T Consensus 336 kYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ksl 405 (556)
T KOG3807|consen 336 KYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKSL 405 (556)
T ss_pred hhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHHhc
Confidence 22111 122211111100 11111221 1357888899999999887766655443
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.35 E-value=0.52 Score=27.63 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=39.6
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHH---HHHHHHccCcCchHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNR---ALTLLHLQLYDPVLPDCDK 105 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l---a~~~~~~~~~~~A~~~~~~ 105 (240)
+......|.-++...+.++|+..++++++..++.+..+..+ ..+|...|+|.+.+.+...
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788888888888888888777665544443 4456666777666655433
No 369
>KOG2422|consensus
Probab=94.22 E-value=2.7 Score=34.72 Aligned_cols=155 Identities=14% Similarity=0.065 Sum_probs=102.3
Q ss_pred hCCHHHHHHHHHHHHHh------------cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc-----C-----------
Q psy17412 59 SGQYEAALVQYDKAIEQ------------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL-----D----------- 110 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~----------- 110 (240)
...|++|...|.-+... .|-+...+..++.+....|+.+-|.....+++-. .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45688888888887765 3445778889999999999999988888887621 1
Q ss_pred -----cccHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-chHHHHHhccCchHHHHHHHHHHHHhcccCchhhH
Q psy17412 111 -----EDNMKA---HLYKARAMHSLGQREEAKEYVRQLVEKYPT-RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 181 (240)
Q Consensus 111 -----~~~~~~---~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 181 (240)
|.+-.. .+..-..+.+.|-+..|.++.+-.+.++|. +|-. +.+.+-....+..+|.=-++.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~----------~l~~ID~~ALrareYqwiI~~ 400 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG----------ILYLIDIYALRAREYQWIIEL 400 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh----------HHHHHHHHHHHHHhHHHHHHH
Confidence 223222 223334456779999999999999999998 5544 122233333345556555555
Q ss_pred HHHH-----hhcChhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Q psy17412 182 CDKA-----LRLDEDNMKAHLYKARAMHNLGQ---REEAKEYIRELVEKYP 224 (240)
Q Consensus 182 ~~~~-----l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p 224 (240)
++.. +...|+. ..-..+|..|..... ...|...+.+|+...|
T Consensus 401 ~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 401 SNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 4443 2333443 233556666666555 5678889999998887
No 370
>KOG2041|consensus
Probab=94.10 E-value=1.9 Score=36.53 Aligned_cols=50 Identities=8% Similarity=0.009 Sum_probs=24.0
Q ss_pred HHhCCHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHccCcCchHHHHHHH
Q psy17412 57 FQSGQYEAALVQYDKAIEQVRD--SPVLYTNRALTLLHLQLYDPVLPDCDKA 106 (240)
Q Consensus 57 ~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~ 106 (240)
...|+|-...++++..-.-..+ -..++.++|..+..+..+++|.++|.+.
T Consensus 771 ~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 771 KKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555554432211111 1335555565555555555555555543
No 371
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.02 E-value=0.93 Score=36.62 Aligned_cols=102 Identities=17% Similarity=0.013 Sum_probs=65.2
Q ss_pred HHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q psy17412 55 KAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAK 134 (240)
Q Consensus 55 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 134 (240)
...+.|+.+.|.+..+ ..+++..|..+|...+..|+++-|.++|+++-. +-.+..+|...|+-+.=.
T Consensus 327 LAl~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 327 LALQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHH
T ss_pred HHHhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHH
Confidence 3456677777766543 234678999999999999999999999998742 345666777788876555
Q ss_pred HHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 135 EYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
+..+.+..... +...-.+++..|+.+++++.+.+.
T Consensus 394 kl~~~a~~~~~----------------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 394 KLAKIAEERGD----------------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHTT-----------------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHccC----------------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 55544443332 333334556667777776665543
No 372
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.84 E-value=0.25 Score=35.25 Aligned_cols=63 Identities=10% Similarity=0.035 Sum_probs=55.9
Q ss_pred HHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q psy17412 167 LTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKL 229 (240)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 229 (240)
.-+.+.+...+++.....-++-.|.+......+-.++.-.|++++|...++-+-++.|+...-
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 345677888999999999999999999999999999999999999999999999999987543
No 373
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=93.84 E-value=1.2 Score=35.27 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcccCchhhHHHHHhhcC---------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 162 YTNRALTLLHLQLYDPVLPDCDKALRLD---------EDNMKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 162 ~~~la~~~~~~~~~~~A~~~~~~~l~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
...+.+++.-+|+|..|++.++.. +++ +-+...++..|-+|+.+++|.+|+..|..++
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667888899999999988664 222 2346778999999999999999999999887
No 374
>KOG3807|consensus
Probab=93.71 E-value=2.5 Score=32.51 Aligned_cols=133 Identities=10% Similarity=-0.026 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----------- 150 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------- 150 (240)
.-+.+...-.+..+..+-++....+++++|..+.++..++.-. .--..+|.+.++++++........
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQH 263 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccch
Confidence 3444555556667777778888999999999999988877532 234567888888887754332111
Q ss_pred -HHHhccC--chHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh--HHHHHHHHHHHHHcCCHHHHHHHH
Q psy17412 151 -AIEQVRD--SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN--MKAHLYKARAMHNLGQREEAKEYI 216 (240)
Q Consensus 151 -~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~ 216 (240)
+...-.. ...+...++.|-.++|+..+|++.+....+-.|-. ..+.-++-..+..+.-|.+....+
T Consensus 264 da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 264 EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111 22345667889999999999999999888776632 233445555555554444443333
No 375
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=93.69 E-value=0.73 Score=30.67 Aligned_cols=59 Identities=19% Similarity=0.096 Sum_probs=45.5
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCc
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDP 98 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~ 98 (240)
.+-..-.+.....+...+..|++.-|.++.+.++..+|++..+...++.++.++|.-.+
T Consensus 64 v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 64 VELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 33344567788888899999999999999999999999999999999998888775543
No 376
>KOG1463|consensus
Probab=93.63 E-value=2.6 Score=32.46 Aligned_cols=169 Identities=14% Similarity=0.061 Sum_probs=108.0
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhc----C--CChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-----cccH--HH
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQV----R--DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-----EDNM--KA 116 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~----~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~--~~ 116 (240)
..+...|+..++|.+|+......+..- . .-.+++..-..+|....+..+|...+..|-... |... ..
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 346778889999999999888776542 1 124566667788888888888887776654321 3222 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---hHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTR---RKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 193 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 193 (240)
-..-|..+....+|..|..+|-++++-...- ..+ +. +--|..+..+....-+--.++-.-+.+++....+.
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A-~~-----sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i 285 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKA-LT-----SLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDI 285 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHH-HH-----HHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcch
Confidence 3445667777789999999999998754321 111 10 11133444444333322233333445566666678
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC
Q psy17412 194 KAHLYKARAMHN--LGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 194 ~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~p 224 (240)
+++...+.++.. +.++..|+..|..-+..+|
T Consensus 286 ~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 286 DAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 888888888764 5688889888888777666
No 377
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=93.51 E-value=1.4 Score=34.85 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=45.8
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH--HHHH--HHHHHHHccCcCchHHHHHHHHhc
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV--LYTN--RALTLLHLQLYDPVLPDCDKALRL 109 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~--la~~~~~~~~~~~A~~~~~~~~~~ 109 (240)
.....+..++..++|..|.+.+......-|.... .+.. .|.-++..-++.+|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4456777888999999999999999886344333 3333 445556788899999999987754
No 378
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.16 E-value=0.35 Score=22.37 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q psy17412 60 GQYEAALVQYDKAIEQVRDSPVLYTNRAL 88 (240)
Q Consensus 60 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 88 (240)
|+.+.+...|++++...|.++.+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45667777777777777777777765543
No 379
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=93.15 E-value=0.65 Score=34.31 Aligned_cols=86 Identities=17% Similarity=0.092 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh------hHHHHHHHHHHH
Q psy17412 130 REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED------NMKAHLYKARAM 203 (240)
Q Consensus 130 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~ 203 (240)
....+..+++++......... .-...+...+|..|+..|++++|+++|+.+...... ...+...+..|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~-----R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQN-----RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECA 228 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccc-----hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 334566666666544321111 111345778999999999999999999999655432 245677888899
Q ss_pred HHcCCHHHHHHHHHHHH
Q psy17412 204 HNLGQREEAKEYIRELV 220 (240)
Q Consensus 204 ~~~g~~~~A~~~~~~~~ 220 (240)
..+|+.+..+.+.-+.+
T Consensus 229 ~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 229 KRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 99999998887765544
No 380
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=92.87 E-value=1.8 Score=32.01 Aligned_cols=59 Identities=17% Similarity=0.020 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHccCcCchHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17412 81 VLYTNRALTLLHLQLYDPVLPDCDKALRLDE------DNMKAHLYKARAMHSLGQREEAKEYVRQ 139 (240)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~ 139 (240)
.+...+|.-|+..|++++|+..|+.+..... -...+...+..|....|+.+..+...-+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455677777777777777777777754321 1234556666777777777766655433
No 381
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.78 E-value=0.7 Score=34.62 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 142 (240)
.+...+..|...|.+.+|+++.++++.++|-+...+..+-.++..+|+--.+.+.|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445667788899999999999999999999999999999999999998888888776543
No 382
>KOG0276|consensus
Probab=92.44 E-value=2.7 Score=35.00 Aligned_cols=66 Identities=18% Similarity=0.028 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 68 QYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 68 ~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 142 (240)
+.++|++..++. .-.+ .+..+.|+++.|.....++ ++..-|..||.+....+++..|.+++.++..
T Consensus 629 ~~e~AL~~s~D~-d~rF---elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 629 MKEQALELSTDP-DQRF---ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred chHhhhhcCCCh-hhhh---hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 344455554443 2222 3445677777776655443 4556688888888888888888888887754
No 383
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=92.29 E-value=4.2 Score=31.34 Aligned_cols=162 Identities=19% Similarity=0.083 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc--------------------------CcCchHHHHHHHHhcC-cccH
Q psy17412 62 YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ--------------------------LYDPVLPDCDKALRLD-EDNM 114 (240)
Q Consensus 62 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--------------------------~~~~A~~~~~~~~~~~-~~~~ 114 (240)
-++|+.+-.-...+.|..++++-.++.+.++.. -.+++...+.+++... |.-.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 468888888888889999998887777766522 1234455555555433 2222
Q ss_pred HHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc-
Q psy17412 115 KAHLYKARAMHS-----LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL- 188 (240)
Q Consensus 115 ~~~~~la~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~- 188 (240)
...-.++.++.. .-+|..-...|.-...+.|+ |.+-.|.+.......-.+.++...+.....
T Consensus 292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS------------PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~ 359 (415)
T COG4941 292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS------------PVVTLNRAVALAMREGPAAGLAMVEALLARP 359 (415)
T ss_pred HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC------------CeEeehHHHHHHHhhhHHhHHHHHHHhhccc
Confidence 222223333222 12455545555555555554 445677777777766677777777666554
Q ss_pred -ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 189 -DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 189 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
-......+...|..+.++|+.++|...|++++.+.++..+......+
T Consensus 360 ~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 360 RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 22345567788999999999999999999999999887765544433
No 384
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.26 E-value=1.1 Score=32.27 Aligned_cols=57 Identities=9% Similarity=-0.029 Sum_probs=27.3
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc
Q psy17412 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112 (240)
Q Consensus 56 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 112 (240)
+.+.+..++++...+.-++..|.+......+-..+.-.|+|++|..-++-+-.+.|+
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 344444455555555544555544444444444444445555554444444444443
No 385
>KOG2114|consensus
Probab=92.03 E-value=2.3 Score=36.71 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=13.1
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIE 74 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 74 (240)
..+..-|..++.+|++++|...|-+.+.
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 3344444444444555555444444443
No 386
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=91.89 E-value=3.9 Score=30.05 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=26.6
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDS 79 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 79 (240)
.+..+|....+.|+|++.+.++++++..++.-
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eL 34 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPEL 34 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCC
Confidence 35678899999999999999999999997753
No 387
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.88 E-value=0.56 Score=24.13 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~ 142 (240)
+.+|..|..+|+.+.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5688999999999999999999885
No 388
>KOG1538|consensus
Probab=91.82 E-value=2.6 Score=35.44 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 161 LYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
+++-.|..+....++++|-+.|-++
T Consensus 806 Vy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 806 VYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3555666666666666665555544
No 389
>KOG0686|consensus
Probab=91.79 E-value=2.6 Score=33.26 Aligned_cols=98 Identities=16% Similarity=0.058 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC---hh
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD---ED 191 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---~~ 191 (240)
.++..+|.-|...|+++.|++.|-++-......... ...+.++..+-...|+|..-..+..++...- .+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khv--------Inm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~ 222 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHV--------INMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN 222 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHH--------HHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence 467789999999999999999999977665554433 4457788888888899988888887776541 00
Q ss_pred -----hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 192 -----NMKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 192 -----~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
.+.+...-|.+...+++|..|..+|-.+.
T Consensus 223 ~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 223 LAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 13345566677777889999988886543
No 390
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.66 E-value=6.6 Score=32.25 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=26.9
Q ss_pred HHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHH
Q psy17412 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN 205 (240)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 205 (240)
-|....++++|++.+...++.+..+..+.-.+...+..
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 34456788888888888888887777766665554443
No 391
>KOG0686|consensus
Probab=91.52 E-value=4.3 Score=32.11 Aligned_cols=97 Identities=21% Similarity=0.161 Sum_probs=72.9
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcC--------ccc
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLD--------EDN 113 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~ 113 (240)
.-.++..+|.-|...|+++.|++.|.++-...... ...+.++-.+-...|+|.....+..++.+.- .-.
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 45678889999999999999999999976654332 4567777788888999998888888877641 011
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLV 141 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~ 141 (240)
+.....-|.+.+.+++|..|..++-.+.
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2355566777777789999988886553
No 392
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.42 E-value=4.9 Score=30.32 Aligned_cols=167 Identities=13% Similarity=0.040 Sum_probs=101.7
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCC--------ChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-----cccHHH
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRD--------SPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-----EDNMKA 116 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~ 116 (240)
..+|+-....+++++|+..|.+.+...-. .......++.+|...|++..-.+.....-..- |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 45677788899999999999999876221 13466789999999999876554443332211 222222
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc------C
Q psy17412 117 HLYKARA-MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL------D 189 (240)
Q Consensus 117 ~~~la~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~ 189 (240)
...+-.- -.....++.-+......++........ --....-..+...+++.|+|.+|+......+.- .
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~-----fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK 161 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRK-----FLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDK 161 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCc
Confidence 2222211 122234555555555555433221111 001123566778899999999999888776532 2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 190 EDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 190 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
|+-..++..-+.+|....+..++..-+..+-.
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 33456777778888888888887777665543
No 393
>KOG1538|consensus
Probab=91.33 E-value=8.2 Score=32.73 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=28.0
Q ss_pred HHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219 (240)
Q Consensus 166 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 219 (240)
...+...+++.+|....++--+.- +++++-.|+.+....++++|.+.|.++
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 344455677777766554433332 335555666666666666665555443
No 394
>PF12854 PPR_1: PPR repeat
Probab=91.30 E-value=0.74 Score=22.03 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRE 218 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~ 218 (240)
...|..+...+.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45667777777788888888777764
No 395
>PF12854 PPR_1: PPR repeat
Probab=90.47 E-value=1 Score=21.55 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17412 113 NMKAHLYKARAMHSLGQREEAKEYVRQ 139 (240)
Q Consensus 113 ~~~~~~~la~~~~~~~~~~~A~~~~~~ 139 (240)
+...|..+...+.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345566677777777777777777654
No 396
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=6.3 Score=29.79 Aligned_cols=118 Identities=12% Similarity=0.015 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcC-CC-----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCCH
Q psy17412 63 EAALVQYDKAIEQVR-DS-----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDE------DNMKAHLYKARAMHSLGQR 130 (240)
Q Consensus 63 ~~A~~~~~~a~~~~~-~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~ 130 (240)
++-++.+++.++... ++ ..++.++|..|.+.++.+.+.+.+.+.++..- +-.-....+|.+|..+.-.
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV 171 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVV 171 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHH
Confidence 445555655554322 22 57899999999999999999999888775432 1122445677777776667
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 131 EEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 131 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
.+.++..+..++...+...- .......|...+...++.+|-..+...+.-
T Consensus 172 ~e~lE~~~~~iEkGgDWeRr--------NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 172 EESLEVADDIIEKGGDWERR--------NRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHHHHhCCCHHhh--------hhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 77777777777776654322 122334455566667788887777776644
No 397
>KOG4151|consensus
Probab=90.32 E-value=1.7 Score=37.03 Aligned_cols=105 Identities=21% Similarity=0.235 Sum_probs=81.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH--hcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH--LQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
-|...+..+++..+..-|..++.+-|.+.. .......+.+.+++. .|+|..++....-++...|....++.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-------~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll 131 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-------VVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL 131 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccch-------hhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence 355667777888888888888888774322 124446667776665 57899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
..+.+|...++.+-|++...-.....|.+..+-.
T Consensus 132 ~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 132 KRARKYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 9999999999999999998888888898855444
No 398
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=90.12 E-value=8.2 Score=30.69 Aligned_cols=61 Identities=18% Similarity=0.103 Sum_probs=44.9
Q ss_pred HHHHHHHHHHccCcCchHHHHHHHHhcCcccHH--HHHH--HHHHHHHcCCHHHHHHHHHHHHHc
Q psy17412 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK--AHLY--KARAMHSLGQREEAKEYVRQLVEK 143 (240)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~--la~~~~~~~~~~~A~~~~~~a~~~ 143 (240)
....+.-.+..++|..|...+......-|.... .+.. .|..+....++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345666778899999999999999875333333 3333 345567888999999999988765
No 399
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.11 E-value=2.5 Score=24.68 Aligned_cols=31 Identities=39% Similarity=0.527 Sum_probs=21.0
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
.+..+...|..+-+.|++++|+.+|+++++.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3455666677777777777777777766553
No 400
>KOG4151|consensus
Probab=90.10 E-value=3.5 Score=35.29 Aligned_cols=106 Identities=30% Similarity=0.418 Sum_probs=87.3
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHc--cCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS----PVLYTNRALTLLHL--QLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
.+......|+..+..+++..+.--|..++.+-|.+ .....+.+.|+... |++..++....-++...|....++.
T Consensus 52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll 131 (748)
T KOG4151|consen 52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL 131 (748)
T ss_pred HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence 44555667888899999999988888888887743 45666777777764 6899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
..+.+|...++++-|++.+.-.....|.+...
T Consensus 132 ~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 132 KRARKYEALNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCcchH
Confidence 99999999999999999988888888887544
No 401
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.82 E-value=0.62 Score=36.88 Aligned_cols=60 Identities=13% Similarity=0.026 Sum_probs=45.9
Q ss_pred HHHHHHHHHHccCcCchHHHHHHHH--------hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 83 YTNRALTLLHLQLYDPVLPDCDKAL--------RLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 142 (240)
...+.+++.-+|+|..|++.++..- ...+-+...++..|-+|+-+++|.+|++.|..++-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888999999998876541 11133456789999999999999999999988874
No 402
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.49 E-value=2.5 Score=28.17 Aligned_cols=51 Identities=27% Similarity=0.192 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCH
Q psy17412 159 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQR 209 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 209 (240)
.+.....+.-.+..|++.-|.+..+.++..+|++..+...++.++..+|..
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 344555566666667777777777777777777777776666666665543
No 403
>KOG2561|consensus
Probab=89.40 E-value=4.3 Score=32.45 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=64.7
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc-----------CCChHHHHHHHHHHHHccCc---CchHH-------HHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQV-----------RDSPVLYTNRALTLLHLQLY---DPVLP-------DCD 104 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----------~~~~~~~~~la~~~~~~~~~---~~A~~-------~~~ 104 (240)
+-.+...|..++....|++|+.++-.|-+.+ .+.+.....+.+||+.+.+. ..|.. .|.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 3456677888889999999998887765542 23345556788899988764 33433 333
Q ss_pred HHHhc--------C-cccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 105 KALRL--------D-EDNM------KAHLYKARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 105 ~~~~~--------~-~~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~ 142 (240)
++..- . +..+ ..+..-|.+.+++|+-++|..+++.+..
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 22211 1 2222 2455678999999999999999998865
No 404
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=89.00 E-value=5.6 Score=31.36 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=39.5
Q ss_pred CcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQL 140 (240)
Q Consensus 95 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 140 (240)
..-+|+..++.++...|.+......+..+|..+|-...|...|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 3556778888888999999999999999999999999999988654
No 405
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.77 E-value=8.4 Score=28.95 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHH--------ccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHc--CCHHHH
Q psy17412 64 AALVQYDKAIEQVRDSPVLYTNRALTLLH--------LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSL--GQREEA 133 (240)
Q Consensus 64 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A 133 (240)
.|++.-...+..+|..-.+|...-.+... ..-.+.-+..+..+++-+|.+...|...-.++..- .++..-
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rE 129 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRE 129 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchh
Confidence 46666666666677665565554444433 11234556677788888888888887777666554 567777
Q ss_pred HHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHH------HHhcccCchhhHHHHHhhcChhhHHHHHHHHH---HHH
Q psy17412 134 KEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL------LHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR---AMH 204 (240)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~---~~~ 204 (240)
....++.++.++.+.-. |...-.+. ....++....++-..++..++.+..+|...-. ...
T Consensus 130 l~itkklld~DsrNyH~-----------W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~ 198 (328)
T COG5536 130 LFITKKLLDSDSRNYHV-----------WSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRF 198 (328)
T ss_pred HHHHHHHhcccccccce-----------eeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHH
Confidence 77778888888876543 32222222 22333444466666777778888777766522 222
Q ss_pred HcCC------HHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 205 NLGQ------REEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 205 ~~g~------~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
..|+ +++-+++.-..+-.+|++..+|..+.-+
T Consensus 199 ~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 199 NRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred hhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 3443 3445566666667788887777765543
No 406
>KOG3783|consensus
Probab=88.61 E-value=7.8 Score=31.87 Aligned_cols=91 Identities=14% Similarity=0.047 Sum_probs=64.1
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhh
Q psy17412 101 PDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 180 (240)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (240)
+.+.......|+++......+..+...|+.+.|+..++..++ +..... ..-.++.+|.++....+|.+|-.
T Consensus 254 ~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~-------~~l~~fE~aw~~v~~~~~~~aad 324 (546)
T KOG3783|consen 254 KALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQV-------KSLMVFERAWLSVGQHQYSRAAD 324 (546)
T ss_pred HHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444566788888888889999889998888888887776 332221 23447889999999999999999
Q ss_pred HHHHHhhcChhhHHHHHHHH
Q psy17412 181 DCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~la 200 (240)
.+....+...-.--.|..++
T Consensus 325 ~~~~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 325 SFDLLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHHHHhhhhhhHHHHHHHH
Confidence 99888776544333344444
No 407
>PF13041 PPR_2: PPR repeat family
Probab=88.44 E-value=2 Score=22.47 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=10.9
Q ss_pred HHHHHHHHHHccCcCchHHHHHHHH
Q psy17412 83 YTNRALTLLHLQLYDPVLPDCDKAL 107 (240)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~ 107 (240)
|..+-..+.+.|++++|.+.|++..
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=88.41 E-value=2 Score=30.36 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=41.6
Q ss_pred CchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 176 DPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 176 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
+..++..++.++..|+ +.++..++.++...|+.++|.....++....|.+
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3445566677777775 7889999999999999999999999999999944
No 409
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=88.26 E-value=2.1 Score=24.43 Aligned_cols=30 Identities=37% Similarity=0.433 Sum_probs=21.5
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
+..+...|...-..|++++|+.+|.+++..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445566677777788888888888777664
No 410
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=88.02 E-value=3.7 Score=32.36 Aligned_cols=47 Identities=11% Similarity=-0.045 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHH
Q psy17412 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 106 (240)
Q Consensus 60 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 106 (240)
+..-+|+-+++.++...|.+......+..+|..+|-...|...|...
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 44668999999999999999999999999999999999999999664
No 411
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=87.61 E-value=9.9 Score=28.42 Aligned_cols=65 Identities=17% Similarity=0.061 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHHhcccCchhhHHHHHh----------------hcChhhHHHHHHHHHH-HHHcCCHHHHHHHHHHHH
Q psy17412 158 SPVLYTNRALTLLHLQLYDPVLPDCDKAL----------------RLDEDNMKAHLYKARA-MHNLGQREEAKEYIRELV 220 (240)
Q Consensus 158 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l----------------~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~ 220 (240)
++.++..+|..+.+.|++.+|..+|-..- +-.|...+.+...+.+ |...|+...|...+....
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45669999999999999998887773321 1234445555555554 777899999998887777
Q ss_pred Hh
Q psy17412 221 EK 222 (240)
Q Consensus 221 ~~ 222 (240)
+.
T Consensus 169 ~~ 170 (260)
T PF04190_consen 169 SK 170 (260)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 412
>KOG2561|consensus
Probab=87.32 E-value=7.4 Score=31.20 Aligned_cols=107 Identities=18% Similarity=0.137 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhccc---Cchhh-------HHHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLY---DPVLP-------DCDKA 185 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---~~A~~-------~~~~~ 185 (240)
.++..|.+.+....|++|+.++-.|-+.........+....+.+-+-..+.+||+.+.+. ..|.. .|.++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 345667778888899999888877755543332222344444455566777888887654 23333 33222
Q ss_pred hhc------------Chhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 186 LRL------------DEDN---MKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 186 l~~------------~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
.-. .|.. ...+..-|.+.+.+|+-++|.++++.+...
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 211 1221 234566788999999999999999988653
No 413
>PF13041 PPR_2: PPR repeat family
Probab=87.13 E-value=2.9 Score=21.82 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
..|..+-..+.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34555556666666666666666666544
No 414
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=87.11 E-value=14 Score=29.75 Aligned_cols=166 Identities=18% Similarity=0.170 Sum_probs=97.0
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHccCc-------CchHHHHHHHHhcC---
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHLQLY-------DPVLPDCDKALRLD--- 110 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~-------~~A~~~~~~~~~~~--- 110 (240)
.....+|...+-.++|+-|...|+.+.+....+ +.+.-..|.+.+..+.. +....+++.++...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 345668999999999999999999998866443 22333444555555533 24445555544221
Q ss_pred --------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCchHHHHHhccCchHHHHHHHHHH--HHhcccCch
Q psy17412 111 --------EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK--YPTRRKLAIEQVRDSPVLYTNRALTL--LHLQLYDPV 178 (240)
Q Consensus 111 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~~~~A 178 (240)
.....+....+.++...|.+.+|...+-+.... ..+.... ..+-++-..|.++ ........-
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~------~~alllE~~a~~~~~~~~~~~~~~ 362 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPF------GSALLLEQAAYCYASLRSNRPSPG 362 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhH------hhHHHHHHHHHhhcccccCCCCcc
Confidence 122345666677788888888877776666554 2221100 0223355555555 111110000
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 179 LPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
..- .....--+..-|.-+...|+...|..+|.+++.....
T Consensus 363 ~~r-------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 363 LTR-------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred chh-------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 000 0112333445567789999999999999999987653
No 415
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=87.04 E-value=4.4 Score=26.22 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=22.6
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhc
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQV 76 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 76 (240)
.+..+|...++.+++-.++-.|++|+...
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~s 31 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLS 31 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 34567888888888888888888887763
No 416
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=86.90 E-value=6.8 Score=25.82 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=23.9
Q ss_pred HhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q psy17412 58 QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL 93 (240)
Q Consensus 58 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 93 (240)
..+.....+.+++..+..++.++..+..+..+|.+.
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 345677777777777777666666666666666543
No 417
>KOG4279|consensus
Probab=86.81 E-value=14 Score=32.02 Aligned_cols=172 Identities=13% Similarity=0.039 Sum_probs=98.2
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHH---HccCcCchHHHHHHHHhcC-cccH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLL---HLQLYDPVLPDCDKALRLD-EDNM 114 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~-~~~~ 114 (240)
.++...++-..|....+|+.-+++.+.. +.-|+. ..+.+..+.++. +-|+-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3556666666777778888877776654 333432 112222222332 3467788888887777665 4445
Q ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc-ccCchhhHHHH
Q psy17412 115 KAHLYKARAMHSL---------GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ-LYDPVLPDCDK 184 (240)
Q Consensus 115 ~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~ 184 (240)
+.+...|.+|-.+ +..+.|+.+|+++++..|....- .+++.++...| .++...+.-.-
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG------------IN~atLL~aaG~~Fens~Elq~I 346 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG------------INLATLLRAAGEHFENSLELQQI 346 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc------------ccHHHHHHHhhhhccchHHHHHH
Confidence 6666677776433 55678999999999999974322 34444444333 34444443333
Q ss_pred HhhcCh-----hh---HHHHHHHH---HHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q psy17412 185 ALRLDE-----DN---MKAHLYKA---RAMHNLGQREEAKEYIRELVEKYPTRRKL 229 (240)
Q Consensus 185 ~l~~~~-----~~---~~~~~~la---~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 229 (240)
+++++. .. ..-|...| .+....+++.+|+..-+...++.|...-.
T Consensus 347 gmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 347 GMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred HHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehH
Confidence 333321 00 11111111 12234578888988888888888765443
No 418
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=86.20 E-value=1.8 Score=19.55 Aligned_cols=26 Identities=31% Similarity=0.222 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
|..+-..|.+.|++++|...+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44455566666677777666665543
No 419
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.64 E-value=3.1 Score=24.36 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=22.8
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
.+..+...|...-..|+|++|+.+|..+++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445666777777888888888888887765
No 420
>KOG0687|consensus
Probab=85.50 E-value=15 Score=28.39 Aligned_cols=101 Identities=10% Similarity=-0.020 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHH
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDE------DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIE 153 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 153 (240)
..++.++|..|.+.|+-+.|.+.+.+..+..- +-.-....+|..|....-..+.++-.+..++...+...-
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr--- 180 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR--- 180 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh---
Confidence 46778888888888888888888777654331 122244556666665555555555555555555443221
Q ss_pred hccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 154 QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 154 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
.......|...+...++.+|-..|..++.-
T Consensus 181 -----NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 181 -----NRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred -----hhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 112333455555566777777777666543
No 421
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.64 E-value=22 Score=29.50 Aligned_cols=165 Identities=10% Similarity=-0.008 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 62 YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLV 141 (240)
Q Consensus 62 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 141 (240)
+.-......+.+... .+-.+++.++.||... ..++-...+++..+.+-++...-..++..|.. ++.+.+...|.+++
T Consensus 82 ~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 82 NQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHH
Confidence 333344444555443 3456777788888777 45555677777777777766666667766666 77788888888887
Q ss_pred HcCCC-chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC-hhhHHHH-HHHHHHHHHcCCHHHHHHHHHH
Q psy17412 142 EKYPT-RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-EDNMKAH-LYKARAMHNLGQREEAKEYIRE 218 (240)
Q Consensus 142 ~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~-~~la~~~~~~g~~~~A~~~~~~ 218 (240)
...-. .-..++ -.+|..+-.. -..+.+.-+....+.-+.. .....+. ...-.-|....++++|+..+..
T Consensus 159 yrfI~~~q~~~i------~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~ 230 (711)
T COG1747 159 YRFIPRRQNAAI------KEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKH 230 (711)
T ss_pred HHhcchhhhhhH------HHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 64322 100000 0112222110 0122222222222221111 1111222 2222345567889999999999
Q ss_pred HHHhCCCcHHHHHHHHHhh
Q psy17412 219 LVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 219 ~~~~~p~~~~~~~~l~~~~ 237 (240)
.++.+..+..++..+...+
T Consensus 231 il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 231 ILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HhhhcchhhhHHHHHHHHH
Confidence 9999888877777665544
No 422
>KOG0276|consensus
Probab=84.16 E-value=20 Score=30.30 Aligned_cols=49 Identities=18% Similarity=0.054 Sum_probs=37.2
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc
Q psy17412 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 109 (240)
Q Consensus 56 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 109 (240)
..+.|+++.|.++..++ ++..-|..+|.+....+++..|.++|.++...
T Consensus 647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34566666666554443 55677899999999999999999999988543
No 423
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=83.86 E-value=5.5 Score=25.76 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
..+|..+...|++++|..+|-+++...|.-.++...+.+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~ 105 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQK 105 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 567777777888888888888888888776665555544
No 424
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=83.45 E-value=4.2 Score=23.88 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=20.0
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
+..+...|...-..|+|++|+.+|.++++.
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344555666666777777777777776654
No 425
>KOG1464|consensus
Probab=83.22 E-value=17 Score=27.32 Aligned_cols=177 Identities=12% Similarity=0.103 Sum_probs=102.0
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC-----C-hHHHHHHHHHHHHccCcCchHHHHHHHHhc--CcccHHH--
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRD-----S-PVLYTNRALTLLHLQLYDPVLPDCDKALRL--DEDNMKA-- 116 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-----~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-- 116 (240)
.++-++-.+.+..++|++-.+.|.+.+..-.. . ......+-..-....+.+--.+.|+..+.. +..+...
T Consensus 66 KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWF 145 (440)
T KOG1464|consen 66 KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWF 145 (440)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeee
Confidence 46667778899999999999999988765221 1 112222222222233333333444443321 1122223
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh--
Q psy17412 117 --HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-- 191 (240)
Q Consensus 117 --~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-- 191 (240)
...+|.+++..|.|.+-.+.+++.-......... ....-.+...+|..-...|...++-.+-...|++++.....
T Consensus 146 KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP 225 (440)
T KOG1464|consen 146 KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP 225 (440)
T ss_pred eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC
Confidence 3468999999998888777777665443222111 11222223344555566777777766666678888765432
Q ss_pred hHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 192 NMKA----HLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 192 ~~~~----~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
++.+ .-.=|..+...|++++|-..|-++++..
T Consensus 226 HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 226 HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 1222 2233556788999999999888888764
No 426
>KOG2114|consensus
Probab=83.08 E-value=12 Score=32.74 Aligned_cols=111 Identities=10% Similarity=0.043 Sum_probs=57.2
Q ss_pred hHHHHhCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHccCcCchHHHHHHHHhc-CcccHHHHHHHHHHHHHcCCHH
Q psy17412 54 NKAFQSGQYEAALVQYDKAIEQVRD-SPVLYTNRALTLLHLQLYDPVLPDCDKALRL-DEDNMKAHLYKARAMHSLGQRE 131 (240)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~ 131 (240)
....+..-|+-|+.+-+.- ..+++ ...+....|...+..|++++|...|-+.+.. +|...--.+ ....+..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf------Ldaq~Ik 414 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF------LDAQRIK 414 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh------cCHHHHH
Confidence 3445555566666554332 11222 2446666777777777777777777777643 333221111 2222223
Q ss_pred HHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHH
Q psy17412 132 EAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 182 (240)
Q Consensus 132 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 182 (240)
+-..+++...+..-.+.+. -..|-.||.++++.++-.+..
T Consensus 415 nLt~YLe~L~~~gla~~dh-----------ttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLANSDH-----------TTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred HHHHHHHHHHHcccccchh-----------HHHHHHHHHHhcchHHHHHHH
Confidence 3344455555444333333 556667888888876544433
No 427
>KOG1920|consensus
Probab=82.10 E-value=42 Score=30.91 Aligned_cols=25 Identities=8% Similarity=-0.174 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcccCchhhHHHHHhh
Q psy17412 163 TNRALTLLHLQLYDPVLPDCDKALR 187 (240)
Q Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~l~ 187 (240)
..++.-+...+++-+|-+.+...+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 4555566667777777776666554
No 428
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=81.90 E-value=12 Score=24.73 Aligned_cols=62 Identities=27% Similarity=0.259 Sum_probs=38.4
Q ss_pred HHHHHH-HHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 162 YTNRAL-TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 162 ~~~la~-~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
+..+|. .....|+-++--+.+....+....++..+..+|.+|.+.|+..+|-+.+.++-+..
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344443 33445555544455555554445568899999999999999999999999887653
No 429
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.73 E-value=4.5 Score=23.61 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=21.1
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
+..+...|...-..|+|++|+++|..+++.
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 444555666666778888888888888765
No 430
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=81.62 E-value=5 Score=23.45 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~ 142 (240)
.+...|.-+-..|++++|+.+|+++++
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344455555566666666666665544
No 431
>KOG0128|consensus
Probab=81.43 E-value=37 Score=29.86 Aligned_cols=157 Identities=8% Similarity=-0.070 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH---cCCHHHHHHHH
Q psy17412 61 QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS---LGQREEAKEYV 137 (240)
Q Consensus 61 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~ 137 (240)
.-+.=+..++.-+.+++.+......+-.+.+..|+.++-...-..+.++.|..+..|.....-... .+...++...+
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ 173 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELF 173 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHH
Confidence 344556666666677777777777788888888888887777777777777777777665543332 35667777778
Q ss_pred HHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-------hHHHHHHHHHHHHHcCCHH
Q psy17412 138 RQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-------NMKAHLYKARAMHNLGQRE 210 (240)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~~~la~~~~~~g~~~ 210 (240)
++++.-... ... ...-.......+.++...++++.....|.++++.-.. ....+..+...+...-..+
T Consensus 174 ekal~dy~~-v~i----w~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~ 248 (881)
T KOG0128|consen 174 EKALGDYNS-VPI----WEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQR 248 (881)
T ss_pred HHHhccccc-chH----HHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHH
Confidence 887754322 111 0000111222233334456777777888887754321 2344444444555444445
Q ss_pred HHHHHHHHHHHh
Q psy17412 211 EAKEYIRELVEK 222 (240)
Q Consensus 211 ~A~~~~~~~~~~ 222 (240)
+-+.++...+..
T Consensus 249 qv~a~~~~el~~ 260 (881)
T KOG0128|consen 249 QVIALFVRELKQ 260 (881)
T ss_pred HHHHHHHHHHhc
Confidence 555555555443
No 432
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=80.95 E-value=4.8 Score=29.33 Aligned_cols=91 Identities=15% Similarity=0.031 Sum_probs=54.1
Q ss_pred HHhCCHHHHHHHHHHHHHhcCCCh------------HHHHHHHHHHHHccCcCch--HHHHHHHHh-c-CcccH--HHHH
Q psy17412 57 FQSGQYEAALVQYDKAIEQVRDSP------------VLYTNRALTLLHLQLYDPV--LPDCDKALR-L-DEDNM--KAHL 118 (240)
Q Consensus 57 ~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~la~~~~~~~~~~~A--~~~~~~~~~-~-~~~~~--~~~~ 118 (240)
+..|+|+.|++....+++.+-..| +-...-+......|+.-+. ...+..... . -|+.. ..+.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 457999999999999999853221 1122233334445542221 111222211 1 14433 3455
Q ss_pred HHHHHHH---------HcCCHHHHHHHHHHHHHcCCCc
Q psy17412 119 YKARAMH---------SLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 119 ~la~~~~---------~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
..|..+. ..++...|+.++++++.++|+.
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 6666663 4568889999999999999874
No 433
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=80.53 E-value=4.4 Score=18.65 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
|..+-..+.+.|++++|.+.|.+..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 455666777888888888888776543
No 434
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=80.52 E-value=10 Score=25.14 Aligned_cols=93 Identities=22% Similarity=0.203 Sum_probs=52.4
Q ss_pred HHHHHhHhHHH--HhCCHHHHHHHHHHHHHhcCCChHHHHHHHH-HHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 47 DHFKANGNKAF--QSGQYEAALVQYDKAIEQVRDSPVLYTNRAL-TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 47 ~~~~~~a~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
..+-.+|..+- .-|+...-+..|-..-. . . -+..+|. +....|+-++--+.+.....-...++..+..+|.+
T Consensus 55 ~~LdsIGkiFDis~C~NlKrVi~C~~~~n~---~-s-e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~A 129 (161)
T PF09205_consen 55 ETLDSIGKIFDISKCGNLKRVIECYAKRNK---L-S-EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANA 129 (161)
T ss_dssp HHHHHHGGGS-GGG-S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHH
T ss_pred HHHHHHhhhcCchhhcchHHHHHHHHHhcc---h-H-HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 34444555432 34666666666644311 1 1 2333443 44456666665566666665556678889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcC
Q psy17412 124 MHSLGQREEAKEYVRQLVEKY 144 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~ 144 (240)
|.+.|+..++-+.+.+|-+..
T Consensus 130 y~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 130 YKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHhcchhhHHHHHHHHHHhc
Confidence 999999999999999988754
No 435
>KOG2581|consensus
Probab=80.50 E-value=28 Score=27.89 Aligned_cols=104 Identities=17% Similarity=0.085 Sum_probs=76.8
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh-----cCC-ChHHHHHHHHHHHHccCcCchHHHHHHHHhc----CcccH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQ-----VRD-SPVLYTNRALTLLHLQLYDPVLPDCDKALRL----DEDNM 114 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~ 114 (240)
.+..|+.+...+-..|+...-...+...+.. +.. .+.....+-.+|...+.|+.|.....+..-- +...+
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~A 247 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWA 247 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHH
Confidence 4567777777777788866655555554443 111 2445566778889999999998888776521 12446
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR 148 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 148 (240)
...+.+|.+..-+++|..|.+++-+|+...|++.
T Consensus 248 RY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 248 RYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 6788899999999999999999999999999844
No 436
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.08 E-value=7.7 Score=27.36 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=38.9
Q ss_pred hHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy17412 99 VLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 99 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
.++..++.+...| ++..+..++.++...|+.++|....+++..+.|.+
T Consensus 130 ~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 130 YIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3445556666666 56788899999999999999999999999999953
No 437
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=79.64 E-value=25 Score=26.81 Aligned_cols=104 Identities=9% Similarity=0.033 Sum_probs=74.2
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccH--
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM-- 114 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-- 114 (240)
....+++.++|..|.+.++.+.+.+.+.+.+...-.. ..+...+|.+|-...=.++.++..+..++...+..
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 3568899999999999999999999998887764322 23445677777666556677777777776654432
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 115 -KAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 115 -~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
......|...+...++.+|...+-.++.....
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 23344566777778899999888887765544
No 438
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=79.41 E-value=7.2 Score=22.69 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=20.0
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
+..+...|...-..|++++|+.+|.++++.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666666777777777777777654
No 439
>KOG2758|consensus
Probab=79.03 E-value=28 Score=26.97 Aligned_cols=163 Identities=13% Similarity=-0.023 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 65 ALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL----DEDNMKAHLYKARAMHSLGQREEAKEYVRQL 140 (240)
Q Consensus 65 A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 140 (240)
-++.+++-....|+.....+..+...+..|+|..|..++-....+ ++++..+.+..-....-+.+|+-|++.+.+.
T Consensus 114 ~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rL 193 (432)
T KOG2758|consen 114 NLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRL 193 (432)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444455666777788888888888888887665443322 2233444444444455566777777777665
Q ss_pred HHcCCC---ch--------------------------HHHHHhcc-----------CchHHHHHHHHHHHHh-cccCchh
Q psy17412 141 VEKYPT---RR--------------------------KLAIEQVR-----------DSPVLYTNRALTLLHL-QLYDPVL 179 (240)
Q Consensus 141 ~~~~~~---~~--------------------------~~~~~~~~-----------~~~~~~~~la~~~~~~-~~~~~A~ 179 (240)
-+.-.. .. +..+..+- ..|.++..++.+-.-. .+...++
T Consensus 194 re~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~l 273 (432)
T KOG2758|consen 194 REYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRL 273 (432)
T ss_pred HHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHH
Confidence 443111 11 00011110 1233444444444433 5556667
Q ss_pred hHHHHHhhcChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 180 PDCDKALRLDED-NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 180 ~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
+.+-+++....- ..+.....-.|++-.=++++|...++++-+.-.++.
T Consensus 274 kdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nDf 322 (432)
T KOG2758|consen 274 KDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVNDF 322 (432)
T ss_pred HHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcch
Confidence 777676654321 122233344555666788888888877766544443
No 440
>KOG2063|consensus
Probab=78.98 E-value=48 Score=29.70 Aligned_cols=168 Identities=15% Similarity=0.033 Sum_probs=95.7
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHccCc--CchHHHHHHHHhcCcccHH--
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQV----RDSPVLYTNRALTLLHLQLY--DPVLPDCDKALRLDEDNMK-- 115 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~~~~~-- 115 (240)
....-+..++..|...|+.++|++.+.+..... +.....+-.+-......+.- +-..++-+-.++.+|....
T Consensus 502 ~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~I 581 (877)
T KOG2063|consen 502 KKSKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQI 581 (877)
T ss_pred HhcccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheee
Confidence 345567788899999999999999999988743 22233333344444444444 4445555555555543211
Q ss_pred ---------H--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh--------cccC
Q psy17412 116 ---------A--HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL--------QLYD 176 (240)
Q Consensus 116 ---------~--~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--------~~~~ 176 (240)
. -.....-+.......-++.+++.++......... .+..++..|... ++-+
T Consensus 582 ft~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~----------lht~ll~ly~e~v~~~~~~~~kg~ 651 (877)
T KOG2063|consen 582 FTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTL----------LHTVLLKLYLEKVLEQASTDGKGE 651 (877)
T ss_pred eeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchH----------HHHHHHHHHHHHHhhccCchhccc
Confidence 0 1112223456667778888888888766553222 133344333322 2223
Q ss_pred chhhH--HHHHhhc-------Chh-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 177 PVLPD--CDKALRL-------DED-------NMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 177 ~A~~~--~~~~l~~-------~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
++.+. .++.... +|+ ....+...+.++.++|+.++|+..|-..+.
T Consensus 652 e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 652 EAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred cchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 34333 2222211 121 145677788888889999999888876664
No 441
>KOG0687|consensus
Probab=78.65 E-value=29 Score=26.94 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=70.9
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccH--
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRD------SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM-- 114 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-- 114 (240)
....+++..+|..|.+.|+-+.|.+.+.+.....-. -.-....+|..|....-..+.++-.+..++...+..
T Consensus 101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr 180 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR 180 (393)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh
Confidence 345789999999999999999999999887765322 133455677777665555555555555555543332
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 115 -KAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 115 -~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
......|.......+|.+|...|-.++.....
T Consensus 181 NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 181 NRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 23344566777778999999988887765543
No 442
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=78.45 E-value=8.1 Score=28.19 Aligned_cols=101 Identities=13% Similarity=-0.057 Sum_probs=53.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccC--chHHHHHHHHHHHHhcccCchhhHHHHHhhc-----Chhh--HH
Q psy17412 124 MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRD--SPVLYTNRALTLLHLQLYDPVLPDCDKALRL-----DEDN--MK 194 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~~~~--~~ 194 (240)
.+..|+++.|++....+++.+-.-|+. ...... .++-...-+......|..-+. ..+.....+ -|+. ..
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~-f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQ-FRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCcc-ccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhcCCCChHHHHH
Confidence 467799999999999998865433221 000000 011122223333334432111 112211111 1333 44
Q ss_pred HHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCc
Q psy17412 195 AHLYKARAMH---------NLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 195 ~~~~la~~~~---------~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
.+...|..+. ..++...|+.++++++.++|..
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 5566676663 4567889999999999999874
No 443
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=78.34 E-value=32 Score=27.37 Aligned_cols=64 Identities=9% Similarity=-0.002 Sum_probs=43.7
Q ss_pred chhHHHHHHH--hHhHHHHhCCHHHHHHHHHHHHHhcCCC-----hHHHHH--HHHHHHHccCcCchHHHHHH
Q psy17412 42 RQDIADHFKA--NGNKAFQSGQYEAALVQYDKAIEQVRDS-----PVLYTN--RALTLLHLQLYDPVLPDCDK 105 (240)
Q Consensus 42 ~~~~~~~~~~--~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~--la~~~~~~~~~~~A~~~~~~ 105 (240)
+|........ .+..++..++|..|...|..+....+.. ...+.. .|..++..-++++|.+.+++
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3434433333 5557889999999999999999875422 223333 44455678889999999985
No 444
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=78.03 E-value=0.7 Score=38.38 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=0.0
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHH--HhcCC-ChHHHHHHHHHHHHccCcCchHHHHHHH--HhcCc-ccHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAI--EQVRD-SPVLYTNRALTLLHLQLYDPVLPDCDKA--LRLDE-DNMKA 116 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~--~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~--~~~~~-~~~~~ 116 (240)
+.....++.-+..++..|++..|...+.+.- .+.+. ........|.+....|+++.|+..+... ..+.+ .....
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~ 100 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHH
Confidence 4566677778889999999999999998776 22332 2455667888889999999999998742 11211 12345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEK 143 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~ 143 (240)
+..++.++...|++-+|...+-..-.+
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 666788899999888887776554443
No 445
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=77.70 E-value=8.4 Score=22.41 Aligned_cols=28 Identities=43% Similarity=0.539 Sum_probs=16.9
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
.+...|...-..|++++|+.+|..+++.
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555667777777766666553
No 446
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=77.22 E-value=18 Score=23.81 Aligned_cols=119 Identities=16% Similarity=0.160 Sum_probs=66.5
Q ss_pred HHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHH
Q psy17412 88 LTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL 167 (240)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 167 (240)
..+...+.....+.+++.++..++.++..+..+..++... +..+.+..++. .++..+ ....+.
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd------------~~~~~~ 77 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHYD------------IEKVGK 77 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCC------------HHHHHH
Confidence 3444556778888888888887777777777777777654 33455555552 111111 223344
Q ss_pred HHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH-NLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
...+.+.++++...+.+.- ....+. .++. ..++++.|++++.+ +.+++.|..+...
T Consensus 78 ~c~~~~l~~~~~~l~~k~~----~~~~Al----~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~ 134 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDG----NFKDAI----VTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKA 134 (140)
T ss_pred HHHHcCcHHHHHHHHHhhc----CHHHHH----HHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 4455555555555554421 111111 1122 23778888887765 3466677766653
No 447
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=76.45 E-value=13 Score=26.16 Aligned_cols=47 Identities=4% Similarity=0.002 Sum_probs=29.3
Q ss_pred HHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHH
Q psy17412 165 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212 (240)
Q Consensus 165 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A 212 (240)
...++++.|.+++|.+.+++... +|++......+..+-.....+..-
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~ 163 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPV 163 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHH
Confidence 34567777888888888887777 666655555555554444444433
No 448
>KOG4014|consensus
Probab=76.27 E-value=24 Score=24.88 Aligned_cols=162 Identities=14% Similarity=0.074 Sum_probs=92.1
Q ss_pred hhHHHHHHHhHhHHH-HhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-----ccCcCchHHHHHHHHhcCcccHHH
Q psy17412 43 QDIADHFKANGNKAF-QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLH-----LQLYDPVLPDCDKALRLDEDNMKA 116 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~ 116 (240)
...++.-..+|..+. -+.+|++|...|+.--..+. .+...+.+|..++. .++...|++.+..+-. .+.+.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 345566666666543 35678888877776544432 24444555554432 2356677777777665 345667
Q ss_pred HHHHHHHHHHc-----C--CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHH-------------------
Q psy17412 117 HLYKARAMHSL-----G--QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL------------------- 170 (240)
Q Consensus 117 ~~~la~~~~~~-----~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------------------- 170 (240)
-..+|.++..- + +..+|.+++.++-.+..... -+.|...++
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~a-------------Cf~LS~m~~~g~~k~~t~ap~~g~p~~~ 174 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEA-------------CFLLSTMYMGGKEKFKTNAPGEGKPLDR 174 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchH-------------HHHHHHHHhccchhhcccCCCCCCCcch
Confidence 77777766532 2 36678888888877654322 223333322
Q ss_pred -----HhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q psy17412 171 -----HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN----LGQREEAKEYIRELVEK 222 (240)
Q Consensus 171 -----~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~ 222 (240)
-..+.+.|.++--++.+++ ++.+-.++++.|.. -.+.++|..+-.++.++
T Consensus 175 ~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 175 AELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 2345566666666666553 34455555555532 22456676666666654
No 449
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=76.21 E-value=10 Score=22.09 Aligned_cols=30 Identities=30% Similarity=0.217 Sum_probs=19.1
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
+..+...|...-..|++++|+.+|..+++.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 334455556666677777777777776654
No 450
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=76.01 E-value=11 Score=20.94 Aligned_cols=38 Identities=39% Similarity=0.591 Sum_probs=25.8
Q ss_pred HHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 184 KALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 184 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
..++....+..-......-+..+|++++|.+++.+...
T Consensus 14 ~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 14 DSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33443444455566666778899999999999988765
No 451
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=75.86 E-value=10 Score=21.92 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=17.7
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
.+...|...-..|++++|+.+|..+++.
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555667777777777776654
No 452
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.93 E-value=33 Score=26.02 Aligned_cols=126 Identities=13% Similarity=0.165 Sum_probs=80.4
Q ss_pred chHHHHHHHHhcCcccHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHH
Q psy17412 98 PVLPDCDKALRLDEDNMKAHLYKARAMHS--------LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL 169 (240)
Q Consensus 98 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 169 (240)
.|++.-...+..+|....+|...-.+... ..-++.-+..+..+++-+|.+... |...-.++
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~Yqi-----------W~HR~~~L 118 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQI-----------WHHRQWML 118 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhh-----------hHHHHHHH
Confidence 34555555566666665555554444433 122344566777888888887666 77776666
Q ss_pred HHh--cccCchhhHHHHHhhcChhhHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 170 LHL--QLYDPVLPDCDKALRLDEDNMKAHLYKARAM------HNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 170 ~~~--~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~------~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
... ..+..-+...++.++.++.+..+|...-.+. ..-.....-.++-..++..++.+..+|....
T Consensus 119 e~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~ 191 (328)
T COG5536 119 ELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRY 191 (328)
T ss_pred HhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHH
Confidence 554 5677778888999999998877665443333 2223334445666677888998888887653
No 453
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=74.32 E-value=14 Score=21.00 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
...|.-+-..|++++|+.+|.+++.
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444456666666666655553
No 454
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=73.72 E-value=12 Score=24.31 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=20.6
Q ss_pred HhHhHHHHhCCHHHHHHHHHHHHHhcCCCh
Q psy17412 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDSP 80 (240)
Q Consensus 51 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~ 80 (240)
.+|..+...|++++|...|-+|+...|...
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 467777777777777777777777776643
No 455
>KOG1463|consensus
Probab=71.43 E-value=47 Score=26.01 Aligned_cols=174 Identities=10% Similarity=0.025 Sum_probs=104.1
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHH---HHhcCCC--hHHHHHHHHHHHH-ccCcCchHHHHHHHHhcCcccHH---
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKA---IEQVRDS--PVLYTNRALTLLH-LQLYDPVLPDCDKALRLDEDNMK--- 115 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a---~~~~~~~--~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~--- 115 (240)
.-.....+|..+.+.|+..+-....... +...+.. ..+...+...... .+..+.-+..+..+++.....-+
T Consensus 47 kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFL 126 (411)
T KOG1463|consen 47 KEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFL 126 (411)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHH
Confidence 3456778999999999987765555443 3332222 2222233333322 23455566666776655433222
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc----
Q psy17412 116 ---AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL---- 188 (240)
Q Consensus 116 ---~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---- 188 (240)
.-..+..+|+..++|.+|+......++--.. +.+-....+++..-..+|....+..+|...+..+-..
T Consensus 127 Rq~Learli~Ly~d~~~YteAlaL~~~L~rElKK-----lDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai 201 (411)
T KOG1463|consen 127 RQSLEARLIRLYNDTKRYTEALALINDLLRELKK-----LDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI 201 (411)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh-----cccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc
Confidence 3346788999999999999888777642111 0001112344666677888888888888887776432
Q ss_pred --Chhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 189 --DEDN-MKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 189 --~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
.|.- ...=..-|..+....+|.-|..+|-++++-+
T Consensus 202 YcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 202 YCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred ccCHHHHHHHHHhccceeecccccchHHHHHHHHHccc
Confidence 1221 2222334555666689999999998888654
No 456
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=71.42 E-value=49 Score=28.06 Aligned_cols=60 Identities=15% Similarity=-0.001 Sum_probs=44.3
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD 104 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 104 (240)
...+..++..+..+-.-+..++|-.+|++.+..+|+ ..++..+.-..+.|-...|...++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 39 ALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred chhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 345666677777777778888888888888888877 456667777777777777776666
No 457
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=71.00 E-value=15 Score=21.51 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=15.8
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
+...|...-..|+|++|..+|..+++.
T Consensus 9 l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 9 LIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444455556666666666666554
No 458
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=70.98 E-value=48 Score=25.93 Aligned_cols=89 Identities=20% Similarity=0.159 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 61 QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--DEDNMKAHLYKARAMHSLGQREEAKEYVR 138 (240)
Q Consensus 61 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 138 (240)
+|..-..+|+-.....|+ +.+-.|.+...-...-...++...+..... -..+-..+-..|..+.++|+.++|...|+
T Consensus 311 DW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 455555555555555544 334445555555544455556655555433 12334466778999999999999999999
Q ss_pred HHHHcCCCchHH
Q psy17412 139 QLVEKYPTRRKL 150 (240)
Q Consensus 139 ~a~~~~~~~~~~ 150 (240)
+++.+.++....
T Consensus 390 rAi~La~~~aer 401 (415)
T COG4941 390 RAIALARNAAER 401 (415)
T ss_pred HHHHhcCChHHH
Confidence 999999886554
No 459
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=70.97 E-value=14 Score=21.92 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=13.6
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHH
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIE 74 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~ 74 (240)
.....|..+-..|+.++|+.+|++++.
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 334444444445555555555555544
No 460
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=70.85 E-value=16 Score=25.68 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=24.2
Q ss_pred hHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCc
Q psy17412 54 NKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLY 96 (240)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 96 (240)
.++++.|.|++|.+.+++... +|++......+..+-...+.+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~ 160 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPA 160 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccc
Confidence 345667777777777777666 555554444444444443333
No 461
>KOG1497|consensus
Probab=70.51 E-value=48 Score=25.72 Aligned_cols=103 Identities=16% Similarity=0.062 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH--hhcChhh
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA--LRLDEDN 192 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~--l~~~~~~ 192 (240)
.....+|.+|.+.++|..|...+.- +.++.... -.........+..+|..|.+.++..+|..+..++ +..+..+
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~---~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQK---AYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchh---hhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 4677899999999999999877643 22222111 1111122345888999999999999999888876 2223344
Q ss_pred HHH----HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 193 MKA----HLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 193 ~~~----~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
... ....|+++-..+++-+|-..|-+...
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 34456666677777777666655543
No 462
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.98 E-value=12 Score=21.87 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEK 143 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~ 143 (240)
+...|.-.-..|+|++|+.+|..+++.
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555556678888888888877763
No 463
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=69.89 E-value=46 Score=25.24 Aligned_cols=135 Identities=11% Similarity=0.006 Sum_probs=70.1
Q ss_pred HhHHHHhCCHHHHHHHHHHHHHhcCC--ChHHHHHHHHHH---HHccCc----CchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 53 GNKAFQSGQYEAALVQYDKAIEQVRD--SPVLYTNRALTL---LHLQLY----DPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 53 a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~---~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
...++..++|++--+.+.+..+...+ ..+..+..+... +..... ..-...++.-++..|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34567788998888888887754322 111112222111 111111 134566677778889998888888877
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHH
Q psy17412 124 MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 203 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 203 (240)
+....---.. -.....-. ..-+.... .-.+.|...+.+++.++|..+.+...+-.+.
T Consensus 87 ~~~~Aw~~RG-------~~~A~~V~----------~~~W~~~~------~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s 143 (277)
T PF13226_consen 87 WVHRAWDIRG-------SGYASTVT----------EAQWLGAH------QACDQAVAALLKAIELSPRPVAAAIGMINIS 143 (277)
T ss_pred HHHHHHHHHc-------cchhcccC----------HHHHHHHH------HHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 6543111000 00000000 00021111 1235667777777777777776666666666
Q ss_pred HHcCCHH
Q psy17412 204 HNLGQRE 210 (240)
Q Consensus 204 ~~~g~~~ 210 (240)
...|..+
T Consensus 144 ~~fgeP~ 150 (277)
T PF13226_consen 144 AYFGEPD 150 (277)
T ss_pred hhcCCch
Confidence 5555543
No 464
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=69.72 E-value=25 Score=22.14 Aligned_cols=54 Identities=19% Similarity=0.095 Sum_probs=40.0
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccC
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL 95 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 95 (240)
..+.+......|...+..||+..|.+...++-+..+..+..+..-+.+-...||
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 445677778889999999999999999999977765555555555555555553
No 465
>KOG3677|consensus
Probab=69.10 E-value=55 Score=26.43 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcccCchhhHHHHH
Q psy17412 163 TNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
+..|-+|+-.++|.+|+..|..+
T Consensus 276 Y~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666655443
No 466
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=68.69 E-value=10 Score=17.34 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 195 AHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
.|..+..++.+.|+++.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345566667777777777777766554
No 467
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.61 E-value=79 Score=27.44 Aligned_cols=154 Identities=13% Similarity=0.044 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 62 YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLV 141 (240)
Q Consensus 62 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 141 (240)
-++|...+..+..... +....-.....-...++++.+...+...-..........|.+|..+...|+.++|...|+++.
T Consensus 295 ~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4455555555433221 223333344455577788777666666433334556788999999888999999999999985
Q ss_pred HcCCCchHH-HHHhc--------c---C-----chHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHH
Q psy17412 142 EKYPTRRKL-AIEQV--------R---D-----SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 204 (240)
Q Consensus 142 ~~~~~~~~~-~~~~~--------~---~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 204 (240)
. ..+.... +.... + . ....-...+..+...|+...|...+..++.. .+..-...++.+..
T Consensus 374 ~-~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~ 450 (644)
T PRK11619 374 Q-QRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAF 450 (644)
T ss_pred c-CCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Confidence 4 2222111 10000 0 0 0012345567777888888888888777764 23455677778888
Q ss_pred HcCCHHHHHHHHHHH
Q psy17412 205 NLGQREEAKEYIREL 219 (240)
Q Consensus 205 ~~g~~~~A~~~~~~~ 219 (240)
..|.++.++....++
T Consensus 451 ~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 451 NQQWWDLSVQATIAG 465 (644)
T ss_pred HCCCHHHHHHHHhhc
Confidence 888888887665443
No 468
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=68.01 E-value=54 Score=25.27 Aligned_cols=125 Identities=17% Similarity=0.048 Sum_probs=0.0
Q ss_pred hHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-------------------cccH
Q psy17412 54 NKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-------------------EDNM 114 (240)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------------~~~~ 114 (240)
...+..+++.+.++..++.+..+|--.+..+..+.+..++| ++.+...+...+... ++..
T Consensus 107 ~~~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T 185 (301)
T TIGR03362 107 QELLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDET 185 (301)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHH
Q ss_pred HHHHHH----------------------------HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHH
Q psy17412 115 KAHLYK----------------------------ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRA 166 (240)
Q Consensus 115 ~~~~~l----------------------------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 166 (240)
..|..- +......+..+.|+..++..+...++...- ......++
T Consensus 186 ~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~r--------f~~rL~~A 257 (301)
T TIGR03362 186 RAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRER--------FHWRLLLA 257 (301)
T ss_pred HHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHH--------HHHHHHHH
Q ss_pred HHHHHhcccCchhhHHHHHhh
Q psy17412 167 LTLLHLQLYDPVLPDCDKALR 187 (240)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~~l~ 187 (240)
.++...|.++-|...|....+
T Consensus 258 ~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 258 RLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
No 469
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=67.87 E-value=12 Score=17.74 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 208 QREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 208 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
.++.|...|++.+...|+ +..|..+++.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkF 29 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKF 29 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence 356666667766666653 4555555543
No 470
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=67.67 E-value=24 Score=23.82 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=22.2
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 197 LYKARAMHNLG-QREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 197 ~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
..+|..+...| +.+++..+|-+++...|.-.++...+-
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iyq 132 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQ 132 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34566666666 666666666666666665555444433
No 471
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=67.15 E-value=63 Score=25.81 Aligned_cols=54 Identities=19% Similarity=0.021 Sum_probs=40.0
Q ss_pred HHHHHHHccCcCchHHHHHHHHhcCcc-----cHHHHHHH--HHHHHHcCCHHHHHHHHHH
Q psy17412 86 RALTLLHLQLYDPVLPDCDKALRLDED-----NMKAHLYK--ARAMHSLGQREEAKEYVRQ 139 (240)
Q Consensus 86 la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l--a~~~~~~~~~~~A~~~~~~ 139 (240)
.+.-.+..++|..|...|..+....+. ....+..+ |..++..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 555778899999999999999977532 12333444 4455778899999999985
No 472
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=66.86 E-value=34 Score=22.53 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=25.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 201 RAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
..++..-+.+.|...|+++++.+|++-.++..+...++
T Consensus 84 ~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 84 CSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 33444556678888888888888888888777766553
No 473
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=66.84 E-value=1e+02 Score=28.19 Aligned_cols=46 Identities=13% Similarity=0.009 Sum_probs=27.1
Q ss_pred HHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 169 LLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219 (240)
Q Consensus 169 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 219 (240)
...+.|..+=+-.+++.-++.|. +..-.+-..+|+|++|+.++.++
T Consensus 882 q~SQkDPKEYLPfL~~L~~l~~~-----~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 882 QQSQKDPKEYLPFLQELQKLPPL-----YRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred HHhccChHHHHHHHHHHHhCChh-----heeeeHhhhhCCHHHHHHHHHhh
Confidence 33445555555555555444332 23445566788999998887653
No 474
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.17 E-value=56 Score=24.85 Aligned_cols=94 Identities=10% Similarity=0.069 Sum_probs=50.1
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh----------H---HHHHHH-HHHHHccCcCchHHHHHHHHhcCccc-
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDSP----------V---LYTNRA-LTLLHLQLYDPVLPDCDKALRLDEDN- 113 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~---~~~~la-~~~~~~~~~~~A~~~~~~~~~~~~~~- 113 (240)
+-.-+..+.-..||..|++..+++++.-.++. + .+.-+| .++..++++.+++...-+..+.-.+-
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 34456667777888888888888887631110 1 111122 24445666666665554444332221
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 142 (240)
+++.-.....|.+.+.+....+.-...+.
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 33444444555666666655555544443
No 475
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=66.16 E-value=21 Score=22.53 Aligned_cols=47 Identities=23% Similarity=0.202 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCC
Q psy17412 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ 208 (240)
Q Consensus 162 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 208 (240)
....|.+-...|++..|.+.+.++-+..+...-.+..-+.+...+||
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 34445555556666666666666655544444444444555444443
No 476
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=66.16 E-value=34 Score=22.33 Aligned_cols=65 Identities=15% Similarity=0.044 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcccCchhhHHHHHhhcChh---------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH----Hh
Q psy17412 162 YTNRALTLLHLQLYDPVLPDCDKALRLDED---------------NMKAHLYKARAMHNLGQREEAKEYIRELV----EK 222 (240)
Q Consensus 162 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~----~~ 222 (240)
+..+|...++.+++-.++-.|++++....+ .+-...++|..+..+|+.+-.++|++-+- .+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 566777778888888888888888765322 12335789999999999999999987554 45
Q ss_pred CCCc
Q psy17412 223 YPTR 226 (240)
Q Consensus 223 ~p~~ 226 (240)
-|.-
T Consensus 84 iPQC 87 (140)
T PF10952_consen 84 IPQC 87 (140)
T ss_pred ccCC
Confidence 5554
No 477
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.16 E-value=56 Score=24.49 Aligned_cols=95 Identities=13% Similarity=-0.030 Sum_probs=59.5
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHccCcC-chHHHHHHHHhcC------cc
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQ-----VRDSPVLYTNRALTLLHLQLYD-PVLPDCDKALRLD------ED 112 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~~------~~ 112 (240)
-.+.++.-+..+.+.|++..|.++..-.++. .+.+......++.+....+.-+ .-....+++++.. -.
T Consensus 9 AidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~G 88 (260)
T PF04190_consen 9 AIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFG 88 (260)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT-
T ss_pred HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCC
Confidence 4556677777888888888877776655554 2333444456777776665443 2334445555432 24
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17412 113 NMKAHLYKARAMHSLGQREEAKEYVRQ 139 (240)
Q Consensus 113 ~~~~~~~la~~~~~~~~~~~A~~~~~~ 139 (240)
++..+..+|..+++.|++.+|..++-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 678999999999999999999988843
No 478
>KOG4563|consensus
Probab=64.96 E-value=20 Score=28.12 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=44.5
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHccCcCch
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVR--------DSPVLYTNRALTLLHLQLYDPV 99 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~la~~~~~~~~~~~A 99 (240)
.....+...|..++..+++++|...|..|..+.. .+..+++..|..++..++....
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~ 102 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQ 102 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999987632 3456778888888887766544
No 479
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=64.47 E-value=22 Score=21.08 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=15.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
...|..+-..|+.++|+.+|+++++
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 3344444455677777777777664
No 480
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=64.13 E-value=38 Score=22.14 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcccCchhhHHHHHhhcChh----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 162 YTNRALTLLHLQLYDPVLPDCDKALRLDED----------------NMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 162 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
+.++-.++.+.|+.+....++++...++.+ ....+..+..++...|++..|+++.....+..|
T Consensus 5 ~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 5 LCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 566667777888888777777777554421 256788888899999999999999999888876
No 481
>KOG4056|consensus
Probab=63.84 E-value=33 Score=22.73 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
..+|..++..|+.+++..++-.++...|...++...+
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vl 121 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVL 121 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 3466666666666666666666666666555544443
No 482
>KOG4279|consensus
Probab=63.31 E-value=40 Score=29.53 Aligned_cols=130 Identities=14% Similarity=0.109 Sum_probs=74.0
Q ss_pred hCCHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHH---------ccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q psy17412 59 SGQYEAALVQYDKAIEQV-RDSPVLYTNRALTLLH---------LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG 128 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 128 (240)
-|+-++|++..-.+++.. |-.+..+..-|.+|-. .+..+.|+++|+++.+..|... +=.+++.++...|
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAG 334 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhh
Confidence 477889999888888763 4456667677777643 2345678999999999988542 2344555555554
Q ss_pred C-HHHHHHHHHHHHHcCCCchHH-HHHhccCchHHHHHHHHHH---HHhcccCchhhHHHHHhhcChhhH
Q psy17412 129 Q-REEAKEYVRQLVEKYPTRRKL-AIEQVRDSPVLYTNRALTL---LHLQLYDPVLPDCDKALRLDEDNM 193 (240)
Q Consensus 129 ~-~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~la~~~---~~~~~~~~A~~~~~~~l~~~~~~~ 193 (240)
+ |+...+.-.-+++++.--... .+. ....|+..|..+ .-.++|.+|+..-+...++.|-..
T Consensus 335 ~~Fens~Elq~IgmkLn~LlgrKG~le----klq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMKLNSLLGRKGALE----KLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred hhccchHHHHHHHHHHHHHhhccchHH----HHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 3 333333333333322100000 000 011133333322 234788889998888888876543
No 483
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=62.91 E-value=58 Score=25.53 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=33.9
Q ss_pred chhhHHHHHhhcChh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 177 PVLPDCDKALRLDED---NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 177 ~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
+....+...++.-|+ .+..|..+|.+....|..++.+..|++|+.....
T Consensus 121 ei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 121 EILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 444555555555554 4667888888888888888888888888776543
No 484
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=62.72 E-value=54 Score=23.46 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCchHHHHHhccCc-
Q psy17412 81 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAK-EYVRQLVEKYPTRRKLAIEQVRDS- 158 (240)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~- 158 (240)
..+..+-......|+++.|-..|--.+...+-+......+|.--...+.-..+. +.++......|..... .......
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~-~~~~~~~~ 120 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAF-NQYYNRRI 120 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhc-cchhhhhc
Q ss_pred -------------hHHHHHHHHHHHHhcc--------cCchhhHHHHHhhcCh--hhHHHHHHHHHHHHHcCCH
Q psy17412 159 -------------PVLYTNRALTLLHLQL--------YDPVLPDCDKALRLDE--DNMKAHLYKARAMHNLGQR 209 (240)
Q Consensus 159 -------------~~~~~~la~~~~~~~~--------~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~g~~ 209 (240)
|.....--..+.-... +++.++-++..+-.-| +++..|+..|.|+.-..+.
T Consensus 121 ~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L~~Ad~ 194 (199)
T PF04090_consen 121 IAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFIRGMCHLWIADE 194 (199)
T ss_pred ccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHH
No 485
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=61.54 E-value=17 Score=17.32 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHc
Q psy17412 129 QREEAKEYVRQLVEK 143 (240)
Q Consensus 129 ~~~~A~~~~~~a~~~ 143 (240)
+.++|..+++++.+.
T Consensus 23 d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHc
Confidence 356666666666543
No 486
>KOG0128|consensus
Probab=61.01 E-value=1.2e+02 Score=26.95 Aligned_cols=170 Identities=9% Similarity=-0.010 Sum_probs=89.0
Q ss_pred hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHH-------HHccCcCchHHHHHHHHhcCc-------ccHHHHHHHHHHH
Q psy17412 59 SGQYEAALVQYDKAIEQVRDSPVLYTNRALTL-------LHLQLYDPVLPDCDKALRLDE-------DNMKAHLYKARAM 124 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-------~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~la~~~ 124 (240)
.++-.++...|++++... .++.+|...+... ...++++.-...|.+++..-. .....+...-..+
T Consensus 163 s~~~~~v~~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~ 241 (881)
T KOG0128|consen 163 SEERKEVEELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTY 241 (881)
T ss_pred CcchhHHHHHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHH
Confidence 356667777777776543 2333444433333 333456666666666664321 1122333344444
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHH--H-HHHHhcccCchhh-------HHHHHhhcChhhHH
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRA--L-TLLHLQLYDPVLP-------DCDKALRLDEDNMK 194 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la--~-~~~~~~~~~~A~~-------~~~~~l~~~~~~~~ 194 (240)
...-..++-+.++...+... -+.+... .-+.... . ......+++.|.. .+.+.+...|....
T Consensus 242 l~n~~~~qv~a~~~~el~~~-~D~~~~~-------~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q 313 (881)
T KOG0128|consen 242 LCNVEQRQVIALFVRELKQP-LDEDTRG-------WDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQ 313 (881)
T ss_pred HHhHHHHHHHHHHHHHHhcc-chhhhhH-------HHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44444455555555555543 2221100 0011111 0 0111223333333 34444445555555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 195 AHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
.|..+-......|++..-...+++++.-.+.+.+.|..++..+
T Consensus 314 ~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~ 356 (881)
T KOG0128|consen 314 EWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYL 356 (881)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhc
Confidence 6777777788889888888888888888888888888776543
No 487
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=60.33 E-value=17 Score=16.89 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q psy17412 116 AHLYKARAMHSL----GQREEAKEYVRQLVE 142 (240)
Q Consensus 116 ~~~~la~~~~~~----~~~~~A~~~~~~a~~ 142 (240)
+.+.+|.++..- .+..+|..+++++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 344555554431 255666666666544
No 488
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.94 E-value=39 Score=21.11 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKL 229 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 229 (240)
+..+..+|.+|...|+.+.|..-|+.--.+.|.+...
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 4456677777777777777777777766777766443
No 489
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=58.89 E-value=18 Score=16.59 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=15.3
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 213 KEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 213 ~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
+++..+++..+|.+..+|....-++
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHH
Confidence 4555666667777766666555444
No 490
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=58.45 E-value=49 Score=21.62 Aligned_cols=43 Identities=12% Similarity=-0.083 Sum_probs=33.5
Q ss_pred CchHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17412 97 DPVLPDCDKALRLD--EDNMKAHLYKARAMHSLGQREEAKEYVRQ 139 (240)
Q Consensus 97 ~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 139 (240)
++..+.|..+.+.. ...+..|...|..+...|++.+|...|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 55777887776544 45566777889999999999999998864
No 491
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=58.41 E-value=99 Score=26.37 Aligned_cols=77 Identities=17% Similarity=0.084 Sum_probs=54.9
Q ss_pred cCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc
Q psy17412 94 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ 173 (240)
Q Consensus 94 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 173 (240)
...+.+....+.-+.-........+..+..+-..+..++|-.+|++.+..+|++. +...+.-+.+.|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~ 88 (578)
T PRK15490 22 KKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEA-------------RYEYARRLYNTG 88 (578)
T ss_pred hhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcch-------------HHHHHHHHHhhh
Confidence 3344455555554444445566677778888888888999999999988888733 677777788888
Q ss_pred ccCchhhHHH
Q psy17412 174 LYDPVLPDCD 183 (240)
Q Consensus 174 ~~~~A~~~~~ 183 (240)
-...|...+.
T Consensus 89 ~~~~~~~~~~ 98 (578)
T PRK15490 89 LAKDAQLILK 98 (578)
T ss_pred hhhHHHHHHH
Confidence 7777777766
No 492
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=58.39 E-value=1e+02 Score=25.15 Aligned_cols=111 Identities=20% Similarity=0.243 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----hHHHHHhccCchHH--HHHHHHHH-HHhccc-CchhhHHHHHhh-
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTR----RKLAIEQVRDSPVL--YTNRALTL-LHLQLY-DPVLPDCDKALR- 187 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~--~~~la~~~-~~~~~~-~~A~~~~~~~l~- 187 (240)
....|.-+...|++.+|+..|+.++..-|-. ... .....+...+ -+.+|... ...+.. +...+..++.++
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E-~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lEL 285 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREE-EDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLEL 285 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 4456777788999999999999998753211 100 0000000000 12222211 112222 122222333333
Q ss_pred --------cChhhHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 188 --------LDEDNMKAHLYKA-RAMHNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 188 --------~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
+.|.+...-...| ...++.++|..|..+.++.+++.|....
T Consensus 286 AAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 286 AAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 3344433323333 3567899999999999999999987653
No 493
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.26 E-value=87 Score=24.06 Aligned_cols=171 Identities=12% Similarity=0.063 Sum_probs=100.4
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHh------cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc-----CcccHH-
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQ------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL-----DEDNMK- 115 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~- 115 (240)
.-..+...++..|.|.+|+......+.. .+.-..++..-..+|....+..++...+..+-.. .|....
T Consensus 127 Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa 206 (421)
T COG5159 127 LECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQA 206 (421)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHH
Confidence 3345677889999999999988877653 2233556777778888888888877776655422 243333
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhh-cCh
Q psy17412 116 -AHLYKARAMHSLGQREEAKEYVRQLVEKYPT---RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR-LDE 190 (240)
Q Consensus 116 -~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~~~ 190 (240)
.-..-|.....-.+|..|..+|-++++-... +..+ ... --|..+..+.....+--.++-.-+..++ .+.
T Consensus 207 ~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kA-c~s-----LkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~ 280 (421)
T COG5159 207 QLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKA-CVS-----LKYMLLSKIMLNRREEVKAVLRNKNTLKHYDD 280 (421)
T ss_pred HHHHhccceeeccccchhHHHHHHHHHhccccccchHHH-HHH-----HHHHHHHHHHHhhHHHHHHHHccchhHhhhhh
Confidence 2334466777788999999999998875432 2221 100 1133344333332211111111112222 233
Q ss_pred hhHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCC
Q psy17412 191 DNMKAHLYKARAMH--NLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 191 ~~~~~~~~la~~~~--~~g~~~~A~~~~~~~~~~~p 224 (240)
...+++...+..+. .+.++..|+..|..-+..+|
T Consensus 281 r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 281 RMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred hhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 44566666666654 35678888888887666555
No 494
>KOG1497|consensus
Probab=56.60 E-value=94 Score=24.26 Aligned_cols=98 Identities=12% Similarity=-0.018 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCc--c------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCchH
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDE--D------NMKAHLYKARAMHSLGQREEAKEYVRQLVE--KYPTRRK 149 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~ 149 (240)
..+...+|.+|.+.++|..|...+.-. .++. . -...+..+|.+|...++..+|..+..++-- .+..++.
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 346778899999999998887766432 2221 1 123567889999999999999888877632 2223333
Q ss_pred HHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 150 LAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 150 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
. ........|+++-..++|-+|-..|.+.
T Consensus 182 L-------qie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 182 L-------QIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 1112334445555556666665555443
No 495
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.53 E-value=97 Score=24.43 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 192 NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
++.+-+..|..+...|++.++...+.++..+.|+.......+
T Consensus 212 npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~qY 253 (449)
T COG3014 212 NPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQY 253 (449)
T ss_pred hHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHHh
Confidence 455666777777788889999999999888888755544443
No 496
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=56.17 E-value=95 Score=24.19 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 113 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
+...|+....++...++|++-...... +..| - -|.-...++...|+..+|..+..+ + +.
T Consensus 207 dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsP---I-----------GyepFv~~~~~~~~~~eA~~yI~k-~---~~- 265 (319)
T PF04840_consen 207 DKRFWWLKIKALAENKDWDELEKFAKS--KKSP---I-----------GYEPFVEACLKYGNKKEASKYIPK-I---PD- 265 (319)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCC---C-----------ChHHHHHHHHHCCCHHHHHHHHHh-C---Ch-
Confidence 445777788888888898866554321 2222 2 266667777788888888888877 1 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEY 215 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~ 215 (240)
......|.+.|++.+|.+.
T Consensus 266 ----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 266 ----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred ----HHHHHHHHHCCCHHHHHHH
Confidence 3444566778888887654
No 497
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=55.05 E-value=28 Score=17.71 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=27.2
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHcCCHHHH
Q psy17412 181 DCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212 (240)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A 212 (240)
.|..++-.+|++...+...|..+...|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 46678888999999999999999999998654
No 498
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=54.96 E-value=37 Score=21.03 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=28.7
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQV 76 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 76 (240)
....+++..+..|....+.|+|++|.+.++++-+..
T Consensus 10 ~~aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l 45 (97)
T cd00215 10 LHAGNARSKALEALKAAKEGDFAEAEELLEEANDSL 45 (97)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 344567778888888999999999999998886543
No 499
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=54.90 E-value=1.2e+02 Score=24.81 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=56.0
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC--------hHH--------HHHHHHHH-HHccCc-CchHHHHHHHH--
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDS--------PVL--------YTNRALTL-LHLQLY-DPVLPDCDKAL-- 107 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~--------~~~la~~~-~~~~~~-~~A~~~~~~~~-- 107 (240)
.....|..++..|+|.+|+..|+.++..-|-. ..+ -|.+|... ...... +...+.-++.+
T Consensus 206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lEL 285 (422)
T PF06957_consen 206 ERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLEL 285 (422)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 34557888999999999999999998874321 111 11222111 112221 11222222322
Q ss_pred -------hcCcccHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCchH
Q psy17412 108 -------RLDEDNMKAHLYKA-RAMHSLGQREEAKEYVRQLVEKYPTRRK 149 (240)
Q Consensus 108 -------~~~~~~~~~~~~la-~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 149 (240)
++.|.+...-.+.| ...++.++|..|....++.+++.|....
T Consensus 286 AAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 286 AAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 23344433333333 3567889999999999999999987543
No 500
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=54.82 E-value=1.3e+02 Score=25.48 Aligned_cols=129 Identities=9% Similarity=-0.011 Sum_probs=65.5
Q ss_pred cCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH
Q psy17412 94 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG--QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171 (240)
Q Consensus 94 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 171 (240)
|+.++|+..+++--.-. ...-.....+.+....+ .-..=..+|+.+++++|..... ...+...+..
T Consensus 323 ~~l~eal~~~e~~c~~~-~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~-----------le~l~~~~~~ 390 (547)
T PF14929_consen 323 GRLKEALNELEKFCISS-TCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYS-----------LERLILLHQK 390 (547)
T ss_pred ccHHHHHHHHHHhccCC-CccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHH-----------HHHHHhhhhh
Confidence 56666666555532221 22223344455555555 5566677888888888875433 2222222221
Q ss_pred hcccCchhhHHHHH---hhcChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh---------CCCcHHHHHHHHHhhh
Q psy17412 172 LQLYDPVLPDCDKA---LRLDEDNMKAHLYKARAMHN-LGQREEAKEYIRELVEK---------YPTRRKLVENYTQAFE 238 (240)
Q Consensus 172 ~~~~~~A~~~~~~~---l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~---------~p~~~~~~~~l~~~~~ 238 (240)
...+.+.++-. +...| ...+|..++.++.+ .++++.-.+....+++. .-.+..+|..+...+.
T Consensus 391 ---~~~~~~Lle~i~~~l~~~~-s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~ 466 (547)
T PF14929_consen 391 ---DYSAEQLLEMIALHLDLVP-SHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLP 466 (547)
T ss_pred ---HHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhh
Confidence 33344444422 23333 35677777777777 56665444444444321 1234556666655543
Done!