RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17412
(240 letters)
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 117 bits (296), Expect = 5e-31
Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 4/184 (2%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ G K +GQ AL Q+ A++ D+ + Y RA L + LPD K
Sbjct: 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP----TRRKLAIEQVRDSPVL 161
++L D A L + + G+ +EA++ +++++ P + + D
Sbjct: 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR 145
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221
++AL Y + DK L + + + +A G+ +A ++ +
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 205
Query: 222 KYPT 225
Sbjct: 206 LKND 209
Score = 92.8 bits (231), Expect = 4e-22
Identities = 28/216 (12%), Positives = 70/216 (32%), Gaps = 22/216 (10%)
Query: 39 RKARQDIADHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL 95
K + + +A + G+ A+ A + D+ + + L
Sbjct: 167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD 226
Query: 96 YDPVLPDCDKALRLDEDNMKAH------------LYKARAMHSLGQREEAKEYVRQLVEK 143
++ L + + L+LD+D+ + + A + G+ +A +++
Sbjct: 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286
Query: 144 YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 203
P+ + + + + C + L+++ DN+ A +A A
Sbjct: 287 EPSIAEYTVR-------SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339
Query: 204 HNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
+EA + E +++ E +A
Sbjct: 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375
Score = 91.3 bits (227), Expect = 1e-21
Identities = 35/219 (15%), Positives = 72/219 (32%), Gaps = 19/219 (8%)
Query: 21 MNDFMRSVEID----AMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQV 76
+DF + ++ + + + + + D ++ AF SG Y AA+ DK +E
Sbjct: 114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173
Query: 77 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEY 136
L RA + + D A +L DN +A + + LG E +
Sbjct: 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233
Query: 137 VRQLVEKYP------TRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190
VR+ ++ K + + A L+ Y + ++ +
Sbjct: 234 VRECLKLDQDHKRCFAHYKQVKKLNK-----LIESAEELIRDGRYTDATSKYESVMKTEP 288
Query: 191 DN----MKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
+++ + EA E+++ P
Sbjct: 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD 327
Score = 74.3 bits (183), Expect = 1e-15
Identities = 22/191 (11%), Positives = 57/191 (29%), Gaps = 49/191 (25%)
Query: 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP----VLYTNRALTLLHLQLYDPVLPD 102
+ + + + G+Y A +Y+ ++ + +
Sbjct: 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317
Query: 103 CDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY 162
C + L+++ DN+ A +A A +EA +
Sbjct: 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ--------------------------- 350
Query: 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222
D + A +E++ + +A L Q ++ Y V++
Sbjct: 351 ------------------DYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392
Query: 223 YPTRRKLVENY 233
++++++ Y
Sbjct: 393 NAKKQEIIKAY 403
Score = 69.3 bits (170), Expect = 6e-14
Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 22/158 (13%)
Query: 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142
+ + + L LY + D + HL + + + GQ +A
Sbjct: 6 HHSSGVDLGTENLYFQSMADVE-----------KHLELGKKLLAAGQLADALSQFHA--- 51
Query: 143 KYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202
A++ D+ + Y RA L + LPD K ++L D A L +
Sbjct: 52 --------AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103
Query: 203 MHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQE 240
+ G+ +EA++ +++++ P+ + E +Q + +
Sbjct: 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSD 141
Score = 53.5 bits (129), Expect = 1e-08
Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 7/117 (5%)
Query: 57 FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 116
+ + A+ + ++ D+ +RA L ++YD + D + A +E++ +
Sbjct: 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365
Query: 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTR-------RKLAIEQVRDSPVLYTNRA 166
+A L Q ++ Y V++ + RKLA++ D+ +
Sbjct: 366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKK 422
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 113 bits (284), Expect = 8e-30
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 4/184 (2%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ G K +GQ AL Q+ A++ D+ + Y RA L + LPD K
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP----TRRKLAIEQVRDSPVL 161
+ L D A L + + G+ +EA++ +++++ P + + D
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221
++AL Y + DK L + + + +A G+ +A ++ +
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182
Query: 222 KYPT 225
Sbjct: 183 LKSD 186
Score = 89.6 bits (223), Expect = 3e-21
Identities = 28/213 (13%), Positives = 70/213 (32%), Gaps = 22/213 (10%)
Query: 39 RKARQDIADHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL 95
K + + +A + G+ A+ A + D+ + + L
Sbjct: 144 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD 203
Query: 96 YDPVLPDCDKALRLDEDNMKAH------------LYKARAMHSLGQREEAKEYVRQLVEK 143
++ L + + L+LD+D+ + + A + G+ +A +++
Sbjct: 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263
Query: 144 YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 203
P+ + + + + C + L+++ DN+ A +A A
Sbjct: 264 EPSVAEYTVR-------SKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316
Query: 204 HNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236
+EA + E +++ E +A
Sbjct: 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349
Score = 87.7 bits (218), Expect = 1e-20
Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 5/189 (2%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 101
+ D ++ AF Y AA+ DK +E L RA + +
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175
Query: 102 DCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRK-LAIEQVRDSPV 160
D A +L DN +A + + LG E + VR+ ++ ++ A +
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235
Query: 161 LYTNRALTLLHLQLYDPVLPDCDKALRLD----EDNMKAHLYKARAMHNLGQREEAKEYI 216
A L+ Y + ++ + E +++ + EA
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295
Query: 217 RELVEKYPT 225
E+++ P
Sbjct: 296 SEVLQMEPD 304
Score = 70.8 bits (174), Expect = 2e-14
Identities = 19/166 (11%), Positives = 46/166 (27%), Gaps = 49/166 (29%)
Query: 50 KANGNKAFQSGQYEAALVQYDKAIE----QVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ + + G+Y A +Y+ ++ + + + C +
Sbjct: 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
L+++ DN+ A +A A +EA +
Sbjct: 298 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQ------------------------------ 327
Query: 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREE 211
D + A +E++ + +A L Q ++
Sbjct: 328 ---------------DYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358
Score = 65.4 bits (160), Expect = 1e-12
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+++ HL + + + GQ +A V+ P D+ + Y RA L +
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-----------DNYIAYYRRATVFLAM 50
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
LPD K + L D A L + + G+ +EA++ +++++ P
Sbjct: 51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102
Score = 31.9 bits (73), Expect = 0.18
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 47 DHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLY 96
D+ A ++A Y+ A+ Y+ A E + + L+
Sbjct: 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 100 bits (252), Expect = 2e-27
Identities = 32/117 (27%), Positives = 52/117 (44%)
Query: 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPV 99
+ A K GN+ F +Y A Y +AI + V YTNRAL L +Q +
Sbjct: 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 62
Query: 100 LPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156
L DC +AL LD ++KAH + + + +EA +++ +R + +
Sbjct: 63 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 119
Score = 69.3 bits (170), Expect = 3e-15
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
AI + V YTNRAL L +Q + L DC +AL LD ++KAH + + + +
Sbjct: 35 AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYD 94
Query: 211 EAKEYIRELVEKYPT-RRKLVENYTQAFEQ 239
EA ++ R ++ A
Sbjct: 95 EAIANLQRAYSLAKEQRLNFGDDIPSALRI 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 101 bits (252), Expect = 7e-26
Identities = 32/111 (28%), Positives = 51/111 (45%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A K GN+ F +Y A Y +AI + V YTNRAL L +Q + L DC +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156
AL LD ++KAH + + + +EA +++ +R + +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 97.4 bits (243), Expect = 9e-26
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 37 EERKARQDI--ADHFKANGNKAFQSGQYEAALVQYDKAIE---QVRDSPVLYTNRALTLL 91
E R A + + GN+ F+ G Y AL Y +A+ +D VL+ NRA L
Sbjct: 17 EPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL 76
Query: 92 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR--K 149
L+ YD + KA+ D ++KA +++A+ LG+ ++A +++ V P + +
Sbjct: 77 KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136
Query: 150 LAIEQVRDS 158
A+ +
Sbjct: 137 EALRNISGP 145
Score = 65.1 bits (159), Expect = 1e-13
Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 16/129 (12%)
Query: 101 PDCDKALRLDEDNMKAHLYKAR--AMHSLGQREEAKEYVRQLVEKYPTRRKLAIE---QV 155
P + + + G A + Y A+
Sbjct: 13 PGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGA-------LAAY----TQALGLDATP 61
Query: 156 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+D VL+ NRA L L+ YD + KA+ D ++KA +++A+ LG+ ++A
Sbjct: 62 QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLD 121
Query: 216 IRELVEKYP 224
++ V P
Sbjct: 122 LQRCVSLEP 130
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 98.4 bits (246), Expect = 4e-25
Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 13/170 (7%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
AD KA GNK +++ Q++ A+ Y+KA E +D NRA Y+ + +
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD-ITYLNNRAAAEYEKGEYETAISTLND 63
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
A+ + + +++ +G +++ +E Y S +
Sbjct: 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ-----------KSLTEH-RT 111
Query: 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
A L L+ + L + ++ + + + + A +
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161
Score = 94.9 bits (237), Expect = 9e-24
Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 12/165 (7%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
G L K IE + S + A L L+ + L + ++ + +
Sbjct: 86 GNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARL 144
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
+ + + A V+ Y I++ + Y+NRA L L + +
Sbjct: 145 EGKEYFTKSDWPNA-------VKAY----TEMIKRAPEDARGYSNRAAALAKLMSFPEAI 193
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
DC+KA+ D + ++A++ KA A + + A E + K
Sbjct: 194 ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238
Score = 79.9 bits (198), Expect = 3e-18
Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 11/132 (8%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
+ A+ + G + F + A+ Y + I++ + Y+NRA L L + + DC
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
+KA+ D + ++A++ KA A ++ + A E + K + +
Sbjct: 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA-----------EVNNGSS 245
Query: 164 NRALTLLHLQLY 175
R + L+ +
Sbjct: 246 AREIDQLYYKAS 257
Score = 54.5 bits (132), Expect = 3e-09
Identities = 13/109 (11%), Positives = 33/109 (30%), Gaps = 12/109 (11%)
Query: 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLY 175
+ + Q +EA E+ + E + NRA Y
Sbjct: 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHK------------DITYLNNRAAAEYEKGEY 54
Query: 176 DPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ + + A+ + + +++ +G +++ +E Y
Sbjct: 55 ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 95.0 bits (237), Expect = 4e-25
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 37 EERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLY 96
+ A+ K GN+ + +EAA+ Y KAIE + V + NRA L Y
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 97 DPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT------RRKL 150
+ DC++A+ +D KA+ A+ SL + EA Y ++ +E P K+
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
Query: 151 AIEQVRDSP 159
A ++R++P
Sbjct: 123 AELKLREAP 131
Score = 68.0 bits (167), Expect = 8e-15
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 110 DEDNMKAHLYKAR--AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL 167
+ED+ +A K + E A V Y + AIE + V + NRA
Sbjct: 6 EEDSAEAERLKTEGNEQMKVENFEAA-------VHFY-GK---AIELNPANAVYFCNRAA 54
Query: 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227
L Y + DC++A+ +D KA+ A+ +L + EA Y ++ +E P
Sbjct: 55 AYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114
Query: 228 KLVENYTQA 236
N A
Sbjct: 115 TYKSNLKIA 123
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 94.6 bits (236), Expect = 5e-25
Identities = 30/101 (29%), Positives = 44/101 (43%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ K GNKA G + AL Y +AI+ + VLY+NR+ Y D K
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
+ L D K + KA A+ L + EEAK + ++
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104
Score = 65.7 bits (161), Expect = 4e-14
Identities = 24/86 (27%), Positives = 35/86 (40%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
AI+ + VLY+NR+ Y D K + L D K + KA A+ L + E
Sbjct: 30 AIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 89
Query: 211 EAKEYIRELVEKYPTRRKLVENYTQA 236
EAK E ++ +L E
Sbjct: 90 EAKRTYEEGLKHEANNPQLKEGLQNM 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 95.9 bits (239), Expect = 6e-25
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 37 EERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLY 96
A+ K N F++ YE A+ Y +AIE + + Y NR+L L + Y
Sbjct: 4 PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY 63
Query: 97 DPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
L D +A+ LD+ +K + +A + +LG+ A +V+ P
Sbjct: 64 GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113
Score = 66.6 bits (163), Expect = 6e-14
Identities = 22/86 (25%), Positives = 38/86 (44%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
AIE + + Y NR+L L + Y L D +A+ LD+ +K + +A + LG+
Sbjct: 39 AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 98
Query: 211 EAKEYIRELVEKYPTRRKLVENYTQA 236
A +V+ P + Y +
Sbjct: 99 AALRDYETVVKVKPHDKDAKMKYQEC 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 94.2 bits (235), Expect = 7e-25
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 37 EERKARQD--IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ 94
R A + +A K GN+ F+ G Y A+ Y++A+++ ++ +LY+NRA L L
Sbjct: 2 NARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM 61
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
+ L DCD +RLD +K ++ KA + ++ + +A+ ++ P+
Sbjct: 62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113
Score = 66.9 bits (164), Expect = 2e-14
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
A+++ ++ +LY+NRA L L + L DCD +RLD +K ++ KA + + +
Sbjct: 39 AVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWS 98
Query: 211 EAKEYIRELVEKYPTRRKLVENYTQA 236
+A+ + ++ P+ + E
Sbjct: 99 KAQRAYEDALQVDPSNEEAREGVRNC 124
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 94.8 bits (236), Expect = 1e-24
Identities = 23/101 (22%), Positives = 40/101 (39%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+D K+ GN A +Y A+ Y +A+ +P+ +NRA ++ D +
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
A +D KA A + + AKE + +E
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111
Score = 65.5 bits (160), Expect = 1e-13
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
A+ +P+ +NRA ++ D + A +D KA A ++ +
Sbjct: 37 ALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYK 96
Query: 211 EAKEYIRELVEKYPTR-----RKLVENYTQAFEQE 240
AKE + +E ++ +E + E+
Sbjct: 97 GAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 93.1 bits (232), Expect = 2e-24
Identities = 24/100 (24%), Positives = 47/100 (47%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A+ + G + F + A+ Y + I++ + Y+NRA L L + + DC+K
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
A+ D + ++A++ KA A ++ + A E + K
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 103
Score = 64.6 bits (158), Expect = 1e-13
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 123 AMHSLGQREEAKEYVRQLVEKYPTRRKL---AIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
+M + R E KEY + +P K I++ + Y+NRA L L + +
Sbjct: 1 SMKAEEARLEGKEYFTK--SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI 58
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
DC+KA+ D + ++A++ KA A + + A E + K
Sbjct: 59 ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 103
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 98.0 bits (245), Expect = 4e-24
Identities = 33/172 (19%), Positives = 60/172 (34%), Gaps = 11/172 (6%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
++ +Q+G +EAA + Q D+ + + + D A++ +
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+A+ GQ +EA E+ R + P D Y N A L+
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-----------DFIDGYINLAAALVAA 114
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ + AL+ + D + LG+ EEAK + +E P
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Score = 96.1 bits (240), Expect = 2e-23
Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 19/198 (9%)
Query: 35 RFEE-----RKARQDIADHFKAN---GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNR 86
FE + + D+ + FQ + + + AI+Q Y+N
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73
Query: 87 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
+ ALRL D + ++ A A+ + G E A + ++ P
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP- 132
Query: 147 RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNL 206
D + ++ L L + KA+ + A +
Sbjct: 133 ----------DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 207 GQREEAKEYIRELVEKYP 224
G+ A + + V P
Sbjct: 183 GEIWLAIHHFEKAVTLDP 200
Score = 95.3 bits (238), Expect = 4e-23
Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 11/172 (6%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN + GQ + A+ Y A+ D Y N A L+ + + AL+ + D
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+ +LG+ EEAK + +E P + V ++N
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-----------NFAVAWSNLGCVFNAQ 182
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ +KA+ LD + + A++ + + A + P
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Score = 92.6 bits (231), Expect = 4e-22
Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
++ A+ Y +A+ + V++ N A L D + +A+ L A+
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
A A+ G EA++ A+ N A + +
Sbjct: 277 LANALKEKGSVAEAEDCYNT-----------ALRLCPTHADSLNNLANIKREQGNIEEAV 325
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
KAL + + AH A + G+ +EA + +E + P
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
Score = 91.1 bits (227), Expect = 1e-21
Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 14/172 (8%)
Query: 47 DHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
D + + G+ E A Y KAIE + V ++N +
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
+KA+ LD + + A++ + + A + A+ + V++
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR-----------ALSLSPNHAVVHG 241
Query: 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
N A L D + +A+ L A+ A A+ G EA++
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDC 293
Score = 81.0 bits (201), Expect = 5e-18
Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 14/164 (8%)
Query: 47 DHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
+H +GN A ++ G + A+ Y +AIE P Y N A L
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
+ ALRL + + A G EEA R+ +E +P + ++
Sbjct: 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-----------EFAAAHS 343
Query: 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG 207
N A L L +A+R+ A+ + +
Sbjct: 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
Score = 74.1 bits (183), Expect = 1e-15
Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 11/142 (7%)
Query: 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142
A ++ C + R + DN L + + + + + ++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 143 KYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202
+ P Y+N + ALRL D + ++ A A
Sbjct: 62 QNP-----------LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA 110
Query: 203 MHNLGQREEAKEYIRELVEKYP 224
+ G E A + ++ P
Sbjct: 111 LVAAGDMEGAVQAYVSALQYNP 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 91.5 bits (228), Expect = 1e-23
Identities = 28/102 (27%), Positives = 52/102 (50%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
D+A K GN+ FQ G Y A+ Y +AI++ LY+NRA L + L DC
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
++ ++L+ +K + KA A+ ++ +A + ++ ++
Sbjct: 74 EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115
Score = 65.7 bits (161), Expect = 5e-14
Identities = 18/90 (20%), Positives = 43/90 (47%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
AI++ LY+NRA L + L DC++ ++L+ +K + KA A+ +
Sbjct: 42 AIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYT 101
Query: 211 EAKEYIRELVEKYPTRRKLVENYTQAFEQE 240
+A + ++ ++ + ++ + Y + +
Sbjct: 102 KAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 92.6 bits (231), Expect = 5e-23
Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 11/165 (6%)
Query: 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 110
+ + G YE A + KAIE+ ++ + Y N A L + + L DKAL LD
Sbjct: 28 QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD 87
Query: 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL 170
A+ +EAK+ + A+ ++ L+ L+
Sbjct: 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEK-----------ALRAGMENGDLFYMLGTVLV 136
Query: 171 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
L+ LP +A+ L+E++ +A + N G +EA
Sbjct: 137 KLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181
Score = 83.7 bits (208), Expect = 9e-20
Identities = 32/172 (18%), Positives = 53/172 (30%), Gaps = 14/172 (8%)
Query: 47 DHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
+ N A + E AL YDKA+E + Y + ++Y
Sbjct: 55 EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMF 114
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
+KALR +N + L Q + A Y+++ A+E +
Sbjct: 115 EKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR-----------AVELNENDTEARF 163
Query: 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+ L + + D L D + A RE+A E
Sbjct: 164 QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215
Score = 81.4 bits (202), Expect = 8e-19
Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 11/156 (7%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN Y+ A ++KA+ ++ L+ L+ L+ LP +A+ L+E+
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+ +A + + G +EA EQ + N +T +
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAA-----------VTEQDPGHADAFYNAGVTYAYK 206
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ 208
+ + L DKA+ + D+M A K H+
Sbjct: 207 ENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
Score = 68.7 bits (169), Expect = 4e-14
Identities = 21/157 (13%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 63 EAALVQYDKAIEQVRDSPVLYTNRALTLL----HLQLYDPVLPDCDKALRLDEDNMKAHL 118
++ + + V + + + Y+ KA+ ++++ ++
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61
Query: 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPV 178
A + S+ + E A + + A+E + Y + ++Y
Sbjct: 62 NFANLLSSVNELERALAFYDK-----------ALELDSSAATAYYGAGNVYVVKEMYKEA 110
Query: 179 LPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+KALR +N + L Q + A Y
Sbjct: 111 KDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPY 147
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 88.9 bits (221), Expect = 5e-23
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ K GN F+ G Y A+ YD+ I +PV Y+N+A+ L+ L Y + C +
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKY 144
LR + + L + A V+ V +
Sbjct: 64 GLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVVEV 101
Score = 60.4 bits (147), Expect = 4e-12
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
I +PV Y+N+A+ L+ L Y + C + LR + + L +
Sbjct: 30 LITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK-LQYRLELAQ 88
Query: 211 EAKEYIRELVEKYPTRRKLVENYTQA 236
A ++ V + +L E Y ++
Sbjct: 89 GAVGSVQIPVVEVD---ELPEGYDRS 111
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 95.2 bits (237), Expect = 8e-23
Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 12/189 (6%)
Query: 37 EERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLY 96
E+ K ++ +A + G F A KAIE + Y AL +
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LFPRVNSYIYMALIMADRNDS 286
Query: 97 DPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156
DKAL+LD +N + ++ + L ++A + + A E
Sbjct: 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK-----------AKELDP 335
Query: 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYI 216
++ Y A +D +A R + + + A + + ++A +
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395
Query: 217 RELVEKYPT 225
+E
Sbjct: 396 DLAIELENK 404
Score = 92.1 bits (229), Expect = 1e-21
Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 20/181 (11%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+DKA++ ++ +Y +R LQ YD D DKA LD +
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
N+ ++ A + + ++ + + K+P ++P + A L
Sbjct: 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-----------EAPEVPNFFAEILTDK 385
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMH---------NLGQREEAKEYIRELVEKY 223
+D L D A+ L+ ++ A + + EA + + +
Sbjct: 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445
Query: 224 P 224
P
Sbjct: 446 P 446
Score = 91.7 bits (228), Expect = 2e-21
Identities = 30/202 (14%), Positives = 63/202 (31%), Gaps = 20/202 (9%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
+ + + G F Y+ A +DKA E ++ Y A +D
Sbjct: 302 NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLF 361
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
+A R + + + A + ++A + +E +Y
Sbjct: 362 SEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN-----------KLDGIYV 410
Query: 164 NRALTLLH---------LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKE 214
A + ++ + +KA +LD + +A + A+ +EA
Sbjct: 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470
Query: 215 YIRELVEKYPTRRKLVENYTQA 236
E + T + ++ T A
Sbjct: 471 LFEESADLARTMEEKLQAITFA 492
Score = 90.6 bits (225), Expect = 3e-21
Identities = 31/185 (16%), Positives = 67/185 (36%), Gaps = 12/185 (6%)
Query: 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVL 100
++ + KA+ + + +E L + ++ + + + +
Sbjct: 198 YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257
Query: 101 PDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160
D KA+ L + +++Y A M E Y + A++ ++
Sbjct: 258 EDIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYFDK-----------ALKLDSNNSS 305
Query: 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELV 220
+Y +R LQ YD D DKA LD +N+ ++ A + + ++ + E
Sbjct: 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAK 365
Query: 221 EKYPT 225
K+P
Sbjct: 366 RKFPE 370
Score = 89.0 bits (221), Expect = 1e-20
Identities = 39/197 (19%), Positives = 71/197 (36%), Gaps = 13/197 (6%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 101
+ A K GN+ F++ +Y+ A+ Y+ A+E +++ PV Y+N + + + V+
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALE-LKEDPVFYSNLSACYVSVGDLKKVVE 60
Query: 102 DCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161
KAL L D K L +A A LG+ +A + L L + S
Sbjct: 61 MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL--------SLNGDFNDASIEP 112
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221
R L + D D A + A+ + + + +
Sbjct: 113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP---AKERKDKQENLPSVTSMASFFG 169
Query: 222 KYPTRRKLVENYTQAFE 238
+ NY ++ E
Sbjct: 170 IFKPELTF-ANYDESNE 185
Score = 71.3 bits (175), Expect = 1e-14
Identities = 28/202 (13%), Positives = 62/202 (30%), Gaps = 24/202 (11%)
Query: 36 FEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLH--- 92
+ + + + F + E YD++ E ++ +N
Sbjct: 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYD 206
Query: 93 ---------LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
+L++ L ++ +L E + + A E +++ +E
Sbjct: 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266
Query: 144 YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 203
+P Y AL + DKAL+LD +N + ++ +
Sbjct: 267 FPR------------VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314
Query: 204 HNLGQREEAKEYIRELVEKYPT 225
L ++A + + E P
Sbjct: 315 FILQNYDQAGKDFDKAKELDPE 336
Score = 45.9 bits (109), Expect = 5e-06
Identities = 9/74 (12%), Positives = 22/74 (29%), Gaps = 2/74 (2%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
+ A +KA + S A L + D + +++ L +
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK--L 486
Query: 120 KARAMHSLGQREEA 133
+A + ++
Sbjct: 487 QAITFAEAAKVQQR 500
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 89.6 bits (223), Expect = 1e-21
Identities = 26/175 (14%), Positives = 60/175 (34%), Gaps = 14/175 (8%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD---KALRL 109
+ F++ Y A+ ++K + +SP +Y RA+ L YD D + +
Sbjct: 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69
Query: 110 DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL 169
+ Y + + GQ A + + A+++ +Y
Sbjct: 70 TKAKSADFEYYGKILMKKGQDSLAIQQYQA-----------AVDRDTTRLDMYGQIGSYF 118
Query: 170 LHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ + + +K +R + K +A + + +A +++E P
Sbjct: 119 YNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173
Score = 81.5 bits (202), Expect = 9e-19
Identities = 24/174 (13%), Positives = 51/174 (29%), Gaps = 22/174 (12%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G + GQ A+ QY A+++ +Y + + + +K +R
Sbjct: 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+ K +A + + +A +++E P + + Y RA
Sbjct: 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKP-----------NIYIGYLWRARANAAQ 189
Query: 173 QL---YDPVLPDCDKALRLDEDNMK--------AHLYKARAMHNLGQREEAKEY 215
P +K + + A+ Y A + +A
Sbjct: 190 DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243
Score = 76.5 bits (189), Expect = 6e-17
Identities = 20/176 (11%), Positives = 48/176 (27%), Gaps = 17/176 (9%)
Query: 47 DHFKANGNKA---FQSGQYEAALV---QYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVL 100
+ +A ++ +Y+ A Y + + + L+ +
Sbjct: 35 NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94
Query: 101 PDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160
A+ D + + ++ G A +Y+ + I P
Sbjct: 95 QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK-----------QIRPTTTDPK 143
Query: 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYI 216
++ + + Y K L L + +L++ARA +
Sbjct: 144 VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK 199
Score = 73.1 bits (180), Expect = 1e-15
Identities = 26/168 (15%), Positives = 47/168 (27%), Gaps = 9/168 (5%)
Query: 47 DHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
G + G + A+ +K I P ++ + + Y
Sbjct: 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQ---REEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160
K L L + +L++ARA + + AK Y +L+E + +
Sbjct: 166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA---PGGAKYKDELIE 222
Query: 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ 208
A + L LD N KA + +
Sbjct: 223 ANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270
Score = 68.1 bits (167), Expect = 7e-14
Identities = 16/142 (11%), Positives = 41/142 (28%), Gaps = 8/142 (5%)
Query: 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142
A L Y + +K ++ + +A + L + + A++ +E
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKD----IE 61
Query: 143 KYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202
Y + + + L+ + A+ D + +
Sbjct: 62 TY----FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 203 MHNLGQREEAKEYIRELVEKYP 224
+N G A +Y+ + +
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTT 139
Score = 54.6 bits (132), Expect = 4e-09
Identities = 22/116 (18%), Positives = 36/116 (31%), Gaps = 14/116 (12%)
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
N A + EA E +L K +SP +Y RA+ L
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-----------NSPYIYNRRAVCYYEL 50
Query: 173 QLYDPVLPDCD---KALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
YD D + + + Y + + GQ A + + V++ T
Sbjct: 51 AKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT 106
Score = 39.9 bits (94), Expect = 3e-04
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221
A L Y + +K ++ + +A + L + + A++ I E
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI----E 61
Query: 222 KYPTRRKLVENYTQAF 237
Y ++ + + F
Sbjct: 62 TYFSKVNATKAKSADF 77
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 91.7 bits (228), Expect = 2e-21
Identities = 26/180 (14%), Positives = 62/180 (34%), Gaps = 12/180 (6%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ AN + Y + L ++ + + +
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
++ L ++++ A + +E ++ ++ A++ + P Y +R
Sbjct: 269 SINLHPTP-NSYIFLALTLADKENSQEFFKFFQK-----------AVDLNPEYPPTYYHR 316
Query: 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
LQ Y D KA L+ +N+ ++ A ++ G+ E++ + E K+PT
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376
Score = 91.3 bits (227), Expect = 2e-21
Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 11/170 (6%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+ + KA++ + P Y +R LQ Y D KA L+ +
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
N+ ++ A ++ G+ E++ + + K+P P + T A L
Sbjct: 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-----------TLPEVPTFFAEILTDR 391
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222
+D + D A RL+E K H+ + +++
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441
Score = 89.4 bits (222), Expect = 9e-21
Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 12/186 (6%)
Query: 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPV 99
R++ A G F A V ++I + +P Y ALTL +
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN-LHPTPNSYIFLALTLADKENSQEF 295
Query: 100 LPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159
KA+ L+ + + ++ + L + AKE ++ A ++
Sbjct: 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQK-----------AQSLNPENV 344
Query: 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219
Y A L + ++ + + A + + G + A +
Sbjct: 345 YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404
Query: 220 VEKYPT 225
Sbjct: 405 KRLEEV 410
Score = 89.0 bits (221), Expect = 1e-20
Identities = 24/196 (12%), Positives = 59/196 (30%), Gaps = 8/196 (4%)
Query: 47 DHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
++ ++ F Y+ A + KA ++ Y A L +
Sbjct: 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF 367
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT-----RRKLAIEQVRDS 158
++ + + A + G + A + +
Sbjct: 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427
Query: 159 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRE 218
+++ T L + ++ + KA LD + +A + A+ + + +EA E +
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487
Query: 219 LVEKYPTRRKLVENYT 234
T + ++ T
Sbjct: 488 SAILARTMDEKLQATT 503
Score = 86.7 bits (215), Expect = 8e-20
Identities = 42/213 (19%), Positives = 70/213 (32%), Gaps = 13/213 (6%)
Query: 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPV 99
RQ A K GN F + + A+ Y AIE + PV Y+N + + + V
Sbjct: 19 SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKV 78
Query: 100 LPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP------------TR 147
+ KAL + D+ KA L +A A SLG +A + L
Sbjct: 79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNL 138
Query: 148 RKLAIEQVRDSPVLYTNRALTLLH-LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNL 206
K A++ + ++ R +L D L + N ++ A A+ +
Sbjct: 139 NKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSD 198
Query: 207 GQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
+ + K + Y
Sbjct: 199 ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA 231
Score = 78.2 bits (193), Expect = 8e-17
Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 14/173 (8%)
Query: 54 NKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLH--LQLYDPVLPDCDKALRLDE 111
+ S Y+ A A++++ + A LL +Y +L L E
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
+ A Y +A+ +++ + +PT P Y ALTL
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT------------PNSYIFLALTLAD 288
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ KA+ L+ + + ++ + L + AKE ++ P
Sbjct: 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341
Score = 73.2 bits (180), Expect = 3e-15
Identities = 23/188 (12%), Positives = 56/188 (29%), Gaps = 14/188 (7%)
Query: 47 DHFKANGNKAF---QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
++ A + G++ + +++ + P + T A L +D +
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR------- 156
D A RL+E K H+ + +++ + AI+ +
Sbjct: 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE--KFNAAIKLLTKACELDP 459
Query: 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYI 216
S A L ++ D + + + L + +A + ++
Sbjct: 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK--LQATTFAEAAKIQKRLRAD 517
Query: 217 RELVEKYP 224
+ K
Sbjct: 518 PIISAKME 525
Score = 61.7 bits (150), Expect = 3e-11
Identities = 27/158 (17%), Positives = 45/158 (28%), Gaps = 45/158 (28%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
G + + L + A
Sbjct: 1 GSHMNGEPDIAQLKG--------------------------------LSPSQRQAYAVQL 28
Query: 120 KAR--AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDP 177
K R + EA +Y + +E P + PV Y+N + + +
Sbjct: 29 KNRGNHFFTAKNFNEAIKYYQYAIELDP-----------NEPVFYSNISACYISTGDLEK 77
Query: 178 VLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
V+ KAL + D+ KA L +A A +LG +A
Sbjct: 78 VIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115
Score = 55.1 bits (133), Expect = 4e-09
Identities = 22/172 (12%), Positives = 40/172 (23%), Gaps = 36/172 (20%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL----------------Y 96
G ++ A+ QYD A ++ + + +
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444
Query: 97 DPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156
+ + KA LD + +A + A+ + + +EA E + R
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED-----------SAILAR 493
Query: 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ 208
T K LR D G
Sbjct: 494 TMDEKLQA--TTFAEAAKIQ-------KRLRADPIISAKMELTLARYRAKGM 536
Score = 48.2 bits (115), Expect = 9e-07
Identities = 13/104 (12%), Positives = 29/104 (27%), Gaps = 2/104 (1%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 101
+ I + ++ AA+ KA E S A L ++ D +
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483
Query: 102 DCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
+ + L + +A + ++ + K
Sbjct: 484 LFEDSAILARTMDEK--LQATTFAEAAKIQKRLRADPIISAKME 525
Score = 41.2 bits (97), Expect = 2e-04
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 128 GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR 187
G + + QL L+ Q + V NR + ++ + A+
Sbjct: 1 GSHMNGEPDIAQLKG-------LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE 53
Query: 188 LDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
LD + + + + G E+ E+ + +E P
Sbjct: 54 LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 90
Score = 31.2 bits (71), Expect = 0.28
Identities = 11/86 (12%), Positives = 19/86 (22%), Gaps = 12/86 (13%)
Query: 47 DHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
+A A Q + + A+ ++ + R T
Sbjct: 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA--TTFAEAAKI------- 510
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQ 129
K LR D + G
Sbjct: 511 QKRLRADPIISAKMELTLARYRAKGM 536
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 82.7 bits (205), Expect = 2e-20
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A K GN A++ ++ AL YDKA E + TN+A Y+ C+K
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 106 ALRLDEDNM-------KAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
A+ + +N KA+ + + ++A + + + ++ T
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
Score = 53.5 bits (129), Expect = 2e-09
Identities = 15/73 (20%), Positives = 30/73 (41%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
A E + TN+A Y+ C+KA+ + +N + + A+A +G
Sbjct: 30 AKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89
Query: 211 EAKEYIRELVEKY 223
+E ++ + Y
Sbjct: 90 FKEEKYKDAIHFY 102
Score = 33.4 bits (77), Expect = 0.020
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 54 NKA---FQSGQYEAALVQYDKAIEQVRDSPVL-------YTNRALTLLHLQLYDPVLPDC 103
N+A F+ G Y +KAIE R++ Y + + Y +
Sbjct: 43 NQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY 102
Query: 104 DKALRLDEDN 113
+K+L
Sbjct: 103 NKSLAEHRTP 112
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 81.6 bits (202), Expect = 6e-20
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
D A K GN A++ +E A V YDKAIE + Y N+A + + + C
Sbjct: 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFC 65
Query: 104 DKALRLDEDNM-------KAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
+KA+ + + KA A A ++ + + ++
Sbjct: 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
Score = 52.7 bits (127), Expect = 3e-09
Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 13/116 (11%)
Query: 110 DEDNMKAHLYKAR--AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL 167
+ A K A + E+A Y + AIE + Y N+A
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKA-------HVHY-DK---AIELDPSNITFYNNKAA 50
Query: 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223
+ + + C+KA+ + + + A+AM G + + + V+ +
Sbjct: 51 VYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWF 106
Score = 35.7 bits (83), Expect = 0.003
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 10/78 (12%)
Query: 54 NKA---FQSGQYEAALVQYDKAIEQVRDSPVL-------YTNRALTLLHLQLYDPVLPDC 103
NKA F+ ++ + +KA+E R++ + +
Sbjct: 47 NKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWF 106
Query: 104 DKALRLDEDNMKAHLYKA 121
++L D K
Sbjct: 107 HRSLSEFRDPELVKKVKE 124
Score = 26.9 bits (60), Expect = 3.8
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 183 DKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237
DKA+ LD N+ + KA + E ++ + VE R + +A
Sbjct: 32 DKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 83.8 bits (207), Expect = 4e-19
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 23 DFMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP-- 80
F ++ E M EE+ + + K G F+ G+Y+ AL+QY K + +
Sbjct: 128 SFEKAKESWEMN-SEEKL---EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF 183
Query: 81 -------------VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSL 127
+ N A+ L LQ + + C+KAL LD +N K + A ++
Sbjct: 184 SNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV 243
Query: 128 GQREEAKEYVRQLVEKYPT 146
E A+ +++++ YP
Sbjct: 244 NDFELARADFQKVLQLYPN 262
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 84.1 bits (208), Expect = 6e-19
Identities = 29/190 (15%), Positives = 61/190 (32%), Gaps = 14/190 (7%)
Query: 29 EIDAMRRFEERKARQDIADHFKA---NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTN 85
E D + + ++ A ++ Y +I + S L
Sbjct: 251 EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLC 310
Query: 86 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
+A TL + VL K L +D N+ + ++H G++ + LV+++P
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP 370
Query: 146 TRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN 205
+ V + + L + K+ +D A + A +
Sbjct: 371 -----------EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI 419
Query: 206 LGQREEAKEY 215
G+ ++A
Sbjct: 420 EGEHDQAISA 429
Score = 75.3 bits (185), Expect = 7e-16
Identities = 16/185 (8%), Positives = 50/185 (27%), Gaps = 11/185 (5%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+SG+ + + +++ + V + + L + K+ +D
Sbjct: 346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
A + A + G+ ++A A + + + Y + + L
Sbjct: 406 FGPAWIGFAHSFAIEGEHDQAISAYTT-----------AARLFQGTHLPYLFLGMQHMQL 454
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232
+ L + + N + A + + + + +
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
Query: 233 YTQAF 237
+ +
Sbjct: 515 WAATW 519
Score = 74.5 bits (183), Expect = 1e-15
Identities = 21/180 (11%), Positives = 54/180 (30%), Gaps = 4/180 (2%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
G+++ A+ Y A + + + Y + + L + L + +
Sbjct: 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNE 480
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
+ + A + + + + + N L++YD +
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKK----TQSNEKPWAATWANLGHAYRKLKMYDAAI 536
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
++ L L ++ H A + A ++ E + P + +A E+
Sbjct: 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
Score = 74.1 bits (182), Expect = 2e-15
Identities = 22/179 (12%), Positives = 46/179 (25%), Gaps = 18/179 (10%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G + A + K+ + A + +D + A RL +
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+L+ LG A EY++ + P+L + +
Sbjct: 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-----------YDPLLLNELGVVAFNK 488
Query: 173 QLYDPVLPDCDKALRL-------DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ AL L ++ A L + A + + + +
Sbjct: 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547
Score = 68.7 bits (168), Expect = 1e-13
Identities = 25/175 (14%), Positives = 51/175 (29%), Gaps = 14/175 (8%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVL---PDCDKALRL 109
G ++ A Y +A+ + L + L + +
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266
Query: 110 DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL 169
D +++ S E + S L +A TL
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE-----------KSSDLLLCKADTL 315
Query: 170 LHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ VL K L +D N+ + ++H G++ + +LV+++P
Sbjct: 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP 370
Score = 59.9 bits (145), Expect = 1e-10
Identities = 22/191 (11%), Positives = 51/191 (26%), Gaps = 9/191 (4%)
Query: 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 102
D G + A + ++ + R +L +D
Sbjct: 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDG-GIKLEASMCYLRGQVYTNLSNFDRAKEC 222
Query: 103 CDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY 162
+AL +D +A + + L +E + V +L ++
Sbjct: 223 YKEALMVDAKCYEA--FDQLVSNHLLTADEEWDLVLKL------NYSTYSKEDAAFLRSL 274
Query: 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222
L + D ++ E + L KA + + + +++E
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334
Query: 223 YPTRRKLVENY 233
P + +
Sbjct: 335 DPYNLDVYPLH 345
Score = 52.5 bits (126), Expect = 3e-08
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVL-------YTNRALTLLHLQLYDPVLPDCDK 105
G AF + A+ + A+ V+ + + N L++YD + ++
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEY 136
L L ++ H A A +
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITH 572
Score = 52.5 bits (126), Expect = 4e-08
Identities = 26/190 (13%), Positives = 58/190 (30%), Gaps = 9/190 (4%)
Query: 35 RFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ 94
R + D+ + + A QY+ A +K ++ + + A
Sbjct: 73 RNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTG 131
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEA-----KEYVRQLVEKYPTRRK 149
Y K L + A + L + A + + EK +
Sbjct: 132 DYARAKCLLTKE-DLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190
Query: 150 LAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQR 209
+ ++ + R +L +D +AL +D +A + ++L
Sbjct: 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA--FDQLVSNHLLTA 248
Query: 210 EEAKEYIREL 219
+E + + +L
Sbjct: 249 DEEWDLVLKL 258
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 79.7 bits (197), Expect = 7e-19
Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 18/122 (14%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP------------------VLY 83
+ + + GN+ F Y+ A+ Y A+ ++ LY
Sbjct: 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLY 66
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
N + L++ + L+ +E N KA +A+A + + +EA+E ++ L+
Sbjct: 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126
Query: 144 YP 145
+P
Sbjct: 127 HP 128
Score = 63.9 bits (156), Expect = 5e-13
Identities = 21/109 (19%), Positives = 45/109 (41%)
Query: 131 EEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190
+A + L+ + +E R + LY N + L++ + L+ +E
Sbjct: 35 RDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94
Query: 191 DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
N KA +A+A + +EA+E ++ L+ +P +V + +
Sbjct: 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 83.6 bits (207), Expect = 1e-18
Identities = 23/173 (13%), Positives = 43/173 (24%), Gaps = 11/173 (6%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
NG + L +A V + + L+ +LP +A L
Sbjct: 248 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP 307
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
+ A +L + + Q A V +
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQ-----------AHGLTPQQVVAIASHDGGKQA 356
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
L+ +LP +A L + + A L + + + P
Sbjct: 357 LETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409
Score = 83.3 bits (206), Expect = 1e-18
Identities = 22/161 (13%), Positives = 39/161 (24%), Gaps = 11/161 (6%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
NG + L +A V + L+ +LP +A L
Sbjct: 214 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 273
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
+ A + +L + + Q A V +
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQ-----------AHGLTPQQVVAIASNGGGKQA 322
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
L+ +LP +A L + A L +
Sbjct: 323 LETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 363
Score = 82.9 bits (205), Expect = 2e-18
Identities = 21/181 (11%), Positives = 43/181 (23%), Gaps = 11/181 (6%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
++ + L +A + V + L+ +LP
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
+A L + + A +L + + Q A V
Sbjct: 164 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ-----------AHGLTPQQVVAIA 212
Query: 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223
+ L+ +LP +A L + A L + + +
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 272
Query: 224 P 224
P
Sbjct: 273 P 273
Score = 81.7 bits (202), Expect = 4e-18
Identities = 21/171 (12%), Positives = 42/171 (24%), Gaps = 11/171 (6%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
+ ++ +A L +A + V + L+ +LP
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
+A L + A +L + + Q A V
Sbjct: 198 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ-----------AHGLTPQQVVAIA 246
Query: 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKE 214
+ L+ +LP +A L + A + L +
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLP 297
Score = 80.9 bits (200), Expect = 8e-18
Identities = 20/170 (11%), Positives = 41/170 (24%), Gaps = 11/170 (6%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
+ + L +A V + L+ +LP +A L
Sbjct: 78 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 137
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
+ + A +L + + Q A + V +
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQ-----------AHGLTPEQVVAIASNGGGKQA 186
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221
L+ +LP +A L + A L + + +
Sbjct: 187 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 236
Score = 74.8 bits (184), Expect = 9e-16
Identities = 24/168 (14%), Positives = 46/168 (27%), Gaps = 18/168 (10%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
+ + L +A + V + L+ +LP +A L
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
+ + A +L + + Q A V +
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQ-----------AHGLTPQQVVAIASNGGGRPA 458
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219
L+ L D AL ++ A+ LG R A + +++L
Sbjct: 459 LESIVAQLSRPDPALAALTND------HLVALACLGGR-PALDAVKKL 499
Score = 70.9 bits (174), Expect = 2e-14
Identities = 20/153 (13%), Positives = 39/153 (25%), Gaps = 13/153 (8%)
Query: 62 YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121
+ AL + + V + L+ +LP +A L + A
Sbjct: 56 WRNAL--TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD 113
Query: 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 181
+L + + Q A + V + L+ +LP
Sbjct: 114 GGKQALETVQRLLPVLCQ-----------AHGLTPEQVVAIASHDGGKQALETVQALLPV 162
Query: 182 CDKALRLDEDNMKAHLYKARAMHNLGQREEAKE 214
+A L + + A L +
Sbjct: 163 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
Score = 57.1 bits (138), Expect = 1e-09
Identities = 20/177 (11%), Positives = 43/177 (24%), Gaps = 12/177 (6%)
Query: 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL 107
H + +G +A + A ++ + R ++ L
Sbjct: 7 HHQWSGARALE-ALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPL 65
Query: 108 RLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL 167
L + + A +L + + Q A V +
Sbjct: 66 NLTPEQVVAIASHDGGKQALETVQRLLPVLCQ-----------AHGLTPQQVVAIASHDG 114
Query: 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
L+ +LP +A L + + A L + + + P
Sbjct: 115 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTP 171
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 82.0 bits (203), Expect = 1e-18
Identities = 20/184 (10%), Positives = 48/184 (26%), Gaps = 5/184 (2%)
Query: 35 RFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ 94
FE + + G + A + ++ + + + + LT +
Sbjct: 11 PFEANNPYMYHENPMEE-GLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENE 69
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP----TRRKL 150
+ + A LD ++ H A + + A +R + P
Sbjct: 70 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVN 129
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
V + + Y AL ++ ++ + H + +
Sbjct: 130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYD 189
Query: 211 EAKE 214
A
Sbjct: 190 SAAA 193
Score = 71.2 bits (175), Expect = 1e-14
Identities = 23/174 (13%), Positives = 49/174 (28%), Gaps = 26/174 (14%)
Query: 60 GQYEAALVQYDKAIE---------------QVRDSPVLYTNRALTLLHLQLYDPVLPDCD 104
AAL + V + + Y
Sbjct: 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162
Query: 105 KALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTN 164
AL ++ ++ + H + + A +R+ A+E D L+
Sbjct: 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR-----------AVELRPDDAQLWNK 211
Query: 165 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRE 218
TL + L ++AL ++ ++ A + N+ Q + A + +
Sbjct: 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265
Score = 67.7 bits (166), Expect = 2e-13
Identities = 20/183 (10%), Positives = 54/183 (29%), Gaps = 23/183 (12%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+Y A+E + L+ + + YD + +A+ L D
Sbjct: 145 DFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD 204
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+ + + + + +EA + + A++ + N A++ ++
Sbjct: 205 DAQLWNKLGATLANGNRPQEALDAYNR-----------ALDINPGYVRVMYNMAVSYSNM 253
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN------------LGQREEAKEYIRELV 220
YD +A+ + +R + + + + + V
Sbjct: 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313
Query: 221 EKY 223
E +
Sbjct: 314 EPF 316
Score = 55.8 bits (135), Expect = 2e-09
Identities = 12/153 (7%), Positives = 30/153 (19%), Gaps = 11/153 (7%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
G Y L++L L + + + +A
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
+ A + A ++ A++ + + L
Sbjct: 61 LGLTQAENEKDGLAIIALNH-----------ARMLDPKDIAVHAALAVSHTNEHNANAAL 109
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
L + +A ++
Sbjct: 110 ASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142
Score = 53.4 bits (129), Expect = 1e-08
Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 11/109 (10%)
Query: 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLY 175
+ + +M L EA + + P + + + LT +
Sbjct: 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP-----------EREEAWRSLGLTQAENEKD 71
Query: 176 DPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ + A LD ++ H A + N A +R + P
Sbjct: 72 GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 81.2 bits (201), Expect = 1e-18
Identities = 23/163 (14%), Positives = 54/163 (33%), Gaps = 9/163 (5%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G Q+G ++AA +D +E + NR + L + D + D +
Sbjct: 84 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+ L+ A L +++ + + + + ++ ++ +
Sbjct: 144 DPFRSLWLYLAEQKLDEKQAKEVLKQHF--------EKSDKEQWGWNIVEFYLG-NISEQ 194
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
L + + D L E + + Y + +LG + A
Sbjct: 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237
Score = 78.5 bits (194), Expect = 1e-17
Identities = 24/164 (14%), Positives = 49/164 (29%), Gaps = 15/164 (9%)
Query: 58 QSGQYEAALVQYDKAIEQVR----DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 113
+ Q E L + ++ + + L R + L L D +AL + D
Sbjct: 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM 76
Query: 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ 173
+ Y + G + A E +E + NR + L +
Sbjct: 77 PEVFNYLGIYLTQAGNFDAAYEAFDS-----------VLELDPTYNYAHLNRGIALYYGG 125
Query: 174 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIR 217
D + D ++ L+ A L +++ + +
Sbjct: 126 RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169
Score = 53.9 bits (130), Expect = 7e-09
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 7/133 (5%)
Query: 10 LNLLPTFFLFLMNDFMRSVEIDAMRRFEERKARQDIADHFKANGNKA-------FQSGQY 62
P + ++ ++D + E K + +D + N +
Sbjct: 138 YQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLM 197
Query: 63 EAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122
E L L D A+ + N H Y
Sbjct: 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALL 257
Query: 123 AMHSLGQREEAKE 135
+ LGQ ++
Sbjct: 258 ELSLLGQDQDDLA 270
Score = 53.1 bits (128), Expect = 1e-08
Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 14/137 (10%)
Query: 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL---QLYDPVLPDCDKAL 107
A Q + A + E+ + L ++ L + + D
Sbjct: 149 LWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT 208
Query: 108 RLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL 167
L E + + Y + SLG + A + A+ + V + L
Sbjct: 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKL-----------AVANNVHNFVEHRYALL 257
Query: 168 TLLHLQLYDPVLPDCDK 184
L L L + D+
Sbjct: 258 ELSLLGQDQDDLAESDQ 274
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 82.0 bits (203), Expect = 3e-18
Identities = 29/101 (28%), Positives = 49/101 (48%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A+ K N F++ YE A+ Y +AIE + + Y NR+L L + Y L D +
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
A+ LD+ +K + +A + +LG+ A +V+ P
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106
Score = 55.8 bits (135), Expect = 2e-09
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 130 REEAKEYVRQLVEKYPTRRKL---AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL 186
+ +A +Y + + Y K AIE + + Y NR+L L + Y L D +A+
Sbjct: 10 KTQANDYFKA--KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 67
Query: 187 RLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235
LD+ +K + +A + LG+ A +V+ P + Y +
Sbjct: 68 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 78.6 bits (195), Expect = 3e-18
Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G ++G+Y A++ ++ + + + + + D +++L D
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
N+K + + + A + + E + + + L +L
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIK-----------VAEANPINFNVRFRLGVALDNL 123
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+D + AL L + K H A + +G+ EEA +
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166
Score = 64.0 bits (157), Expect = 8e-13
Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 11/143 (7%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G ++G + ++++ D+ + T LT + +Q YD +P K +
Sbjct: 49 GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
N A+ +LG+ +EA + + A+ + ++ A + +
Sbjct: 109 NFNVRFRLGVALDNLGRFDEAIDSFKI-----------ALGLRPNEGKVHRAIAFSYEQM 157
Query: 173 QLYDPVLPDCDKALRLDEDNMKA 195
++ LP KA LDE
Sbjct: 158 GRHEEALPHFKKANELDEGASVE 180
Score = 63.6 bits (156), Expect = 9e-13
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 11/138 (7%)
Query: 78 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYV 137
V Y ++ ++ Y + ++ D ++ L+ A G + E +
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 138 RQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197
+ ++ D+ + T LT + +Q YD +P K + N
Sbjct: 66 ER-----------SLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRF 114
Query: 198 YKARAMHNLGQREEAKEY 215
A+ NLG+ +EA +
Sbjct: 115 RLGVALDNLGRFDEAIDS 132
Score = 44.4 bits (106), Expect = 7e-06
Identities = 11/109 (10%), Positives = 31/109 (28%), Gaps = 11/109 (10%)
Query: 107 LRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRA 166
+ D+ + K + G+ +A + Q+ + + +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-----------FDVDVALHLG 49
Query: 167 LTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+ + D +++L DN+K + + + A
Sbjct: 50 IAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPL 98
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 78.7 bits (194), Expect = 3e-18
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 16/121 (13%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP----------------VLYTN 85
+ A K GN+ F+ + A+V+Y +A++ + N
Sbjct: 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93
Query: 86 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
A + Y + K L++D++N+KA A G EEAKE + + P
Sbjct: 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153
Query: 146 T 146
Sbjct: 154 N 154
Score = 58.2 bits (141), Expect = 1e-10
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 2/95 (2%)
Query: 131 EEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190
+EA ++ E + + S N A + Y + K L++D+
Sbjct: 62 KEALDFFIHTEEWDDQILLDKKKNIEIS--CNLNLATCYNKNKDYPKAIDHASKVLKIDK 119
Query: 191 DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
+N+KA A G EEAKE + + P
Sbjct: 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 79.9 bits (197), Expect = 2e-17
Identities = 21/176 (11%), Positives = 43/176 (24%), Gaps = 11/176 (6%)
Query: 59 SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118
+ L+Q A+ V + A L + + L L + +A
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPV 178
R + + EA ++Q + P + P + L +
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAP-----------EHPGIALWLGHALEDAGQAEAA 110
Query: 179 LPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234
+A +L + L ++ VE +
Sbjct: 111 AAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFA 166
Score = 65.6 bits (160), Expect = 1e-12
Identities = 18/179 (10%), Positives = 43/179 (24%), Gaps = 14/179 (7%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+ G A + + + P Q + +A +
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+ L+ A+ GQ E A + A + + + P + L
Sbjct: 90 HPGIALWLGHALEDAGQAEAAAAAYTR-----------AHQLLPEEPYITAQLLNWRRRL 138
Query: 173 ---QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRK 228
+ D + A+ ++ + + Q A+ + +
Sbjct: 139 CDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAP 197
Score = 65.3 bits (159), Expect = 2e-12
Identities = 20/137 (14%), Positives = 37/137 (27%), Gaps = 11/137 (8%)
Query: 100 LPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159
L A+R + A L A A +G + V++ + +P P
Sbjct: 9 LLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-----------GHP 57
Query: 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219
Q + +A ++ L+ A+ + GQ E A
Sbjct: 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA 117
Query: 220 VEKYPTRRKLVENYTQA 236
+ P +
Sbjct: 118 HQLLPEEPYITAQLLNW 134
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 76.7 bits (189), Expect = 2e-17
Identities = 27/197 (13%), Positives = 58/197 (29%), Gaps = 28/197 (14%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIE----------------QVRDSPVLYTNRALT 89
D + A ++GQ A+ + + I S L T AL
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63
Query: 90 LLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRK 149
+ YD + L+ +N+ A GQ ++A ++++
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA---- 119
Query: 150 LAIEQVRDSPVLYTNRALTLLH-LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ 208
D+ + L K L A + +
Sbjct: 120 -------DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTR 172
Query: 209 REEAKEYIRELVEKYPT 225
E+A+ +++++ ++P+
Sbjct: 173 YEKARNSLQKVILRFPS 189
Score = 63.6 bits (155), Expect = 2e-12
Identities = 17/141 (12%), Positives = 44/141 (31%), Gaps = 12/141 (8%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
++ Y+ A + Y + +++ ++ A + L +K L+L+ D
Sbjct: 61 ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120
Query: 113 NMKAHLYKARAMHSLGQRE-EAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
N+ A+++ + ++E + E + + L+ L
Sbjct: 121 NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT-----------KMQYARYRDGLSKLF 169
Query: 172 LQLYDPVLPDCDKALRLDEDN 192
Y+ K +
Sbjct: 170 TTRYEKARNSLQKVILRFPST 190
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 78.9 bits (195), Expect = 2e-17
Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 7/186 (3%)
Query: 35 RFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ 94
+FEE +D F+ G + Q G A++ ++ A++Q + T +
Sbjct: 54 QFEEENPLRDHPQPFE-EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE---KYPTRRKLA 151
+ + L L DN A + A + + + +A E +R + Y A
Sbjct: 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 172
Query: 152 IEQVRDSPVLYTNRAL-TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR--AMHNLGQ 208
E + + + R L +LL L+ V A+RLD ++ + + G+
Sbjct: 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 232
Query: 209 REEAKE 214
++A +
Sbjct: 233 YDKAVD 238
Score = 63.9 bits (156), Expect = 4e-12
Identities = 27/176 (15%), Positives = 52/176 (29%), Gaps = 28/176 (15%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRAL---------------TLLHLQLYDPVLPDCD 104
A + L T +LL L+ V
Sbjct: 146 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFL 205
Query: 105 KALRLDEDNMKAHLYKAR--AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY 162
A+RLD ++ + + G+ ++A + A+ + +L+
Sbjct: 206 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA-----------ALSVRPNDYLLW 254
Query: 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRE 218
TL + + + +AL L +++ + NLG EA E+ E
Sbjct: 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 310
Score = 62.4 bits (152), Expect = 1e-11
Identities = 24/197 (12%), Positives = 51/197 (25%), Gaps = 25/197 (12%)
Query: 31 DAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS--PVLYTNRAL 88
+ EE + + + + A+ S P + +
Sbjct: 167 HLVTPAEEGAGGAGLGPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225
Query: 89 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR 148
YD + AL + ++ + + Q EEA R+
Sbjct: 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR--------- 276
Query: 149 KLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL----------- 197
A+E N ++ ++L + + +AL + +
Sbjct: 277 --ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334
Query: 198 YKARAMHNLGQREEAKE 214
A+ LGQ +
Sbjct: 335 TLRLALSMLGQSDAYGA 351
Score = 59.3 bits (144), Expect = 1e-10
Identities = 25/174 (14%), Positives = 49/174 (28%), Gaps = 27/174 (15%)
Query: 67 VQYDKAIEQVRDSPVLYTN-----------RALTLLHLQLY-DPVLPDCDKALRLDEDNM 114
+++++A + + A L Y D DK + +E+N
Sbjct: 1 MEFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENP 60
Query: 115 ----KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL 170
+ G A V++ P + T
Sbjct: 61 LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-----------KHMEAWQYLGTTQA 109
Query: 171 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ + + L L DN A + A + N + +A E +R+ + P
Sbjct: 110 ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163
Score = 54.7 bits (132), Expect = 5e-09
Identities = 25/134 (18%), Positives = 49/134 (36%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G SG+Y+ A+ + A+ + +L+ TL + + + +AL L
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+++ + +LG EA E+ + + R E S +++ L L L
Sbjct: 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 343
Query: 173 QLYDPVLPDCDKAL 186
D + L
Sbjct: 344 GQSDAYGAADARDL 357
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 77.7 bits (192), Expect = 5e-17
Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 2/156 (1%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
+++ A+ Y A + ++ + L +AL + ++
Sbjct: 139 SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHE 198
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
G+ + A+++ +EK L N L+ Y L
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD--KWEPLLNNLGHVCRKLKKYAEAL 256
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+AL L N + +G E A +Y
Sbjct: 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDY 292
Score = 74.6 bits (184), Expect = 6e-16
Identities = 21/198 (10%), Positives = 46/198 (23%), Gaps = 28/198 (14%)
Query: 32 AMRRFEE-----RKARQDIADHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLY 83
++ A Q + + + A + +A+ + P +
Sbjct: 137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM 196
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRL---------DEDNMKAHLYKARAMHSLGQREEAK 134
+ + AL + L + EA
Sbjct: 197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256
Query: 135 EYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 194
+Y RQ + P + Y+ + ++ + AL L D+
Sbjct: 257 DYHRQALVLIP-----------QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305
Query: 195 AHLYKARAMHNLGQREEA 212
+ + EA
Sbjct: 306 SVTMLGHCIEMYIGDSEA 323
Score = 71.2 bits (175), Expect = 9e-15
Identities = 21/183 (11%), Positives = 51/183 (27%), Gaps = 12/183 (6%)
Query: 37 EERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLY 96
E Q+ D + + + + ++ +E+ TL+ L
Sbjct: 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKA 72
Query: 97 DPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQR-EEAKEYVRQLVEKYPTRRKLAIEQV 155
+ + K + L N + +G + E A+ Y+ + A
Sbjct: 73 NELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK-----------ATTLE 121
Query: 156 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+ + + +D + A +L + LY + A+ +
Sbjct: 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181
Query: 216 IRE 218
+
Sbjct: 182 FSQ 184
Score = 70.8 bits (174), Expect = 1e-14
Identities = 21/176 (11%), Positives = 42/176 (23%), Gaps = 20/176 (11%)
Query: 58 QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117
+ E A KA + + + +D + A +L +
Sbjct: 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM 162
Query: 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDP 177
LY + A+ + Q A+ + P + + +
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQ-----------ALSIAPEDPFVMHEVGVVAFQNGEWKT 211
Query: 178 VLPDCDKALRL---------DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
AL + L + EA +Y R+ + P
Sbjct: 212 AEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267
Score = 70.8 bits (174), Expect = 1e-14
Identities = 20/214 (9%), Positives = 53/214 (24%), Gaps = 20/214 (9%)
Query: 32 AMRRFEE-----RKARQDIADHFKA---NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
F+ + H + + + K ++ +PV +
Sbjct: 34 YNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSW 93
Query: 84 TNRALTLLHL-QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142
L + + KA L++ A + + + ++A
Sbjct: 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFT--- 150
Query: 143 KYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202
A + ++ + L +AL + ++
Sbjct: 151 --------AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202
Query: 203 MHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236
G+ + A+++ + +EK V
Sbjct: 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236
Score = 68.9 bits (169), Expect = 7e-14
Identities = 18/158 (11%), Positives = 49/158 (31%), Gaps = 13/158 (8%)
Query: 60 GQY-EAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118
G Y + + ++++ ++++ + + A + + + D +
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60
Query: 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL-QLYDP 177
+ L + E +LV+ YP +PV + L + +
Sbjct: 61 VHIGTLVELNKANELFYLSHKLVDLYP-----------SNPVSWFAVGCYYLMVGHKNEH 109
Query: 178 VLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
KA L++ A + + + ++A
Sbjct: 110 ARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA 147
Score = 47.7 bits (114), Expect = 9e-07
Identities = 8/74 (10%), Positives = 25/74 (33%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
+++ ++++ + + A + + + D + + L +
Sbjct: 14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN 73
Query: 211 EAKEYIRELVEKYP 224
E +LV+ YP
Sbjct: 74 ELFYLSHKLVDLYP 87
Score = 32.3 bits (74), Expect = 0.13
Identities = 5/52 (9%), Positives = 19/52 (36%)
Query: 182 CDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENY 233
+++ ++N+ + A + + + ++EK P + +
Sbjct: 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH 62
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 75.4 bits (186), Expect = 8e-17
Identities = 23/175 (13%), Positives = 54/175 (30%), Gaps = 14/175 (8%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+ + Y A + A++ + + + RA +L++ D +AL + D
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74
Query: 113 NMKAHLYKARAMHS-LGQREEAKEYVRQLVEKYPTRRKLAIEQV--RDSPVLYTNRALTL 169
+ + + + L + E+ Y + A+ + N+ +
Sbjct: 75 SAEINNNYGWFLCGRLNRPAESMAYFDK-----------ALADPTYPTPYIANLNKGICS 123
Query: 170 LHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ ++L A AR GQ +A Y ++ +
Sbjct: 124 AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178
Score = 62.3 bits (152), Expect = 6e-12
Identities = 33/185 (17%), Positives = 54/185 (29%), Gaps = 18/185 (9%)
Query: 47 DHFKANGNKAF---QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLL-HLQLYDPVLPD 102
+ A +A + A + +A+ DS + N L L +
Sbjct: 40 KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAY 99
Query: 103 CDKALR--LDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160
DKAL A+L K GQ A+ Y+++ ++ P
Sbjct: 100 FDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR-----------SLAAQPQFPP 148
Query: 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA-RAMHNLGQREEAKEYIREL 219
+ A T + K E L + LG + A EY +L
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208
Query: 220 VEKYP 224
+P
Sbjct: 209 QANFP 213
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 77.0 bits (189), Expect = 1e-16
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 17/122 (13%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV-----------------LYT 84
R AD K +GN F+ + E A+ QY+ AI + D + +
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234
Query: 85 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKY 144
N A L+ L+ YD + C+ L +E N KA + +A LGQ + A++ R+ +
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294
Query: 145 PT 146
P
Sbjct: 295 PD 296
Score = 32.3 bits (73), Expect = 0.11
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH-- 117
+Y+ A+ + + + +P R L D D KA + D+
Sbjct: 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRE 303
Query: 118 LYKARAMHSLGQREEAKEY 136
L +++ + Y
Sbjct: 304 LRALAEQEKALYQKQKEMY 322
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 77.5 bits (190), Expect = 2e-16
Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 11/172 (6%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
N + G E A+ Y KA+E + ++N A L L +A+R+
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
A+ + + + A + + AI+ ++N A
Sbjct: 76 FADAYSNMGNTLKEMQDVQGALQCYTR-----------AIQINPAFADAHSNLASIHKDS 124
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ AL+L D A+ A + + + E +++LV
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176
Score = 74.1 bits (181), Expect = 2e-15
Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 14/192 (7%)
Query: 39 RKARQDIADHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL 95
RKA + + A+ N A Q G+ + AL+ Y +AI Y+N TL +Q
Sbjct: 33 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 92
Query: 96 YDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQV 155
L +A++++ AH A G EA R A++
Sbjct: 93 VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT-----------ALKLK 141
Query: 156 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
D P Y N A L + + K + + D ++ + + H+ + +
Sbjct: 142 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGF 201
Query: 216 IRELVEKYPTRR 227
+ + E++
Sbjct: 202 RKAIAERHGNLC 213
Score = 68.3 bits (166), Expect = 2e-13
Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 11/147 (7%)
Query: 78 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYV 137
N A + + KAL + + AH A + G+ +EA +
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66
Query: 138 RQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197
++ AI Y+N TL +Q L +A++++ AH
Sbjct: 67 KE-----------AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS 115
Query: 198 YKARAMHNLGQREEAKEYIRELVEKYP 224
A + G EA R ++ P
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALKLKP 142
Score = 47.5 bits (112), Expect = 1e-06
Identities = 23/164 (14%), Positives = 45/164 (27%), Gaps = 2/164 (1%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
AD + SG A+ Y A++ D P Y N A L + +
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
K + + D ++ + + H + + + + E++ I + P +
Sbjct: 169 KKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHP 228
Query: 164 NRALTLLHLQLYDPVLPDCDK--ALRLDEDNMKAHLYKARAMHN 205
V D L + H +
Sbjct: 229 KDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFC 272
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 77.0 bits (189), Expect = 2e-16
Identities = 24/161 (14%), Positives = 40/161 (24%), Gaps = 11/161 (6%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
N + L +A V + L+ +LP +A L
Sbjct: 198 NNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
D + A +L + + Q A D V +
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQ-----------AHGLTPDQVVAIASHGGGKQA 306
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
L+ +LP +A L D + A L +
Sbjct: 307 LETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRL 347
Score = 76.6 bits (188), Expect = 3e-16
Identities = 25/174 (14%), Positives = 44/174 (25%), Gaps = 11/174 (6%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
+ + L +A D V + L+ +LP +A L
Sbjct: 232 HDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 291
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
D + A +L + + Q A D V +
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQ-----------AHGLTPDQVVAIASHDGGKQA 340
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
L+ +LP +A L D + A L + + + P
Sbjct: 341 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 394
Score = 76.2 bits (187), Expect = 4e-16
Identities = 24/161 (14%), Positives = 41/161 (25%), Gaps = 11/161 (6%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
NG + L +A D V + L+ +LP +A L +
Sbjct: 537 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 596
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
+ A +L + + Q A V +
Sbjct: 597 VQVVAIASNIGGKQALETVQRLLPVLCQ-----------AHGLTPAQVVAIASHDGGKQA 645
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
L+ +LP +A L D + A L +
Sbjct: 646 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 686
Score = 74.3 bits (182), Expect = 2e-15
Identities = 24/180 (13%), Positives = 44/180 (24%), Gaps = 11/180 (6%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
++ + L +A D V + L +LP +
Sbjct: 463 VVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQ 522
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
A L D + A +L + + Q A D V +
Sbjct: 523 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ-----------AHGLTPDQVVAIASN 571
Query: 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
L+ +LP +A L + + A L + + + P
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631
Score = 72.0 bits (176), Expect = 1e-14
Identities = 23/167 (13%), Positives = 41/167 (24%), Gaps = 11/167 (6%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+N + L +A D V + L+ +LP +
Sbjct: 497 VVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 556
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
A L D + A +L + + Q A + V +
Sbjct: 557 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ-----------AHGLTQVQVVAIASN 605
Query: 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
L+ +LP +A L + A L +
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRL 652
Score = 72.0 bits (176), Expect = 1e-14
Identities = 22/153 (14%), Positives = 38/153 (24%), Gaps = 11/153 (7%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
+ L + V + L+ +LP +A L D + A
Sbjct: 443 ETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIAS 502
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
+L + + Q A D V + L+ +L
Sbjct: 503 NIGGKQALATVQRLLPVLCQ-----------AHGLTPDQVVAIASNGGGKQALETVQRLL 551
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
P +A L D + A L +
Sbjct: 552 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 584
Score = 71.6 bits (175), Expect = 1e-14
Identities = 25/161 (15%), Positives = 41/161 (25%), Gaps = 12/161 (7%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
N + L +A D V + L+ +LP +A L
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTP 325
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
D + A +L + + Q A D V +
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQ-----------AHGLTPDQVVAIASNGGGKQA 374
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
L+ +LP +A L D + A L +
Sbjct: 375 LETVQRLLPVLCQAHGLTPDQVVAIASNGGK-QALETVQRL 414
Score = 70.1 bits (171), Expect = 5e-14
Identities = 22/153 (14%), Positives = 38/153 (24%), Gaps = 11/153 (7%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
+ L +A D V + L+ +LP + L + A
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
+L ++ + Q A D V + L +L
Sbjct: 469 HDGGKQALETVQQLLPVLCQ-----------AHGLTPDQVVAIASNIGGKQALATVQRLL 517
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
P +A L D + A L +
Sbjct: 518 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 550
Score = 68.5 bits (167), Expect = 1e-13
Identities = 26/191 (13%), Positives = 51/191 (26%), Gaps = 18/191 (9%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
++ + L +A D V + L+ +LP +
Sbjct: 633 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 692
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
A L ++ + A +L + + Q A D V +
Sbjct: 693 AHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ-----------AHGLTPDQVVAIASN 741
Query: 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
L+ +LP +A L A+ + ++A E ++ L+
Sbjct: 742 GGGKQALETVQRLLPVLCQAHGLTPAQ-------VVAIASNIGGKQALETVQRLLPVLCQ 794
Query: 226 RRKLVENYTQA 236
L A
Sbjct: 795 DHGLTLAQVVA 805
Score = 62.4 bits (151), Expect = 2e-11
Identities = 25/172 (14%), Positives = 43/172 (25%), Gaps = 14/172 (8%)
Query: 42 RQDIADHFKANGNKAFQS-GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVL 100
+ K G A ++ AL + V + L+ +L
Sbjct: 155 TGQLVKIAKRGGVTAMEAVHASRNAL--TGAPLNLTPAQVVAIASNNGGKQALETVQRLL 212
Query: 101 PDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160
P +A L + A +L + + Q A D V
Sbjct: 213 PVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQ-----------AHGLPPDQVV 261
Query: 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
+ L+ +LP +A L D + A L +
Sbjct: 262 AIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRL 313
Score = 56.6 bits (136), Expect = 2e-09
Identities = 22/186 (11%), Positives = 39/186 (20%), Gaps = 11/186 (5%)
Query: 27 SVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNR 86
+V + +DI K A ++ V R
Sbjct: 105 AVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKR 164
Query: 87 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
++ L L + A +L + + Q
Sbjct: 165 GGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQ------- 217
Query: 147 RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNL 206
A V + L+ +LP +A L D + A L
Sbjct: 218 ----AHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL 273
Query: 207 GQREEA 212
+
Sbjct: 274 ETVQRL 279
Score = 50.8 bits (121), Expect = 2e-07
Identities = 24/177 (13%), Positives = 48/177 (27%), Gaps = 11/177 (6%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
+ L +A V + L+ +LP + L
Sbjct: 749 ETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQ------ 802
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
A+ S ++A E V++L+ L +QV V + L+ +L
Sbjct: 803 -VVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQV----VAIASNIGGKQALETVQRLL 857
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236
P + L D + A L + + + + + +
Sbjct: 858 PVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGK 914
Score = 42.7 bits (100), Expect = 7e-05
Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 6/163 (3%)
Query: 59 SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118
+ + AL + + + L + + + L + L +
Sbjct: 775 NIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQ 834
Query: 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPV 178
+ A+ S ++A E V++L+ L +QV V + L+ +
Sbjct: 835 DQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQV----VAIASNIGGKQALETVQRL 890
Query: 179 LPDCDKALRLDEDNMKAHLY--KARAMHNLGQREEAKEYIREL 219
LP + L D + A +A+ + + L
Sbjct: 891 LPVLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDHGL 933
Score = 26.9 bits (59), Expect = 7.5
Identities = 11/130 (8%), Positives = 27/130 (20%), Gaps = 6/130 (4%)
Query: 92 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLA 151
H V + + + +G++ + L+ R
Sbjct: 97 HPAALGTVAVTYQHIITALPEATHEDIVG------VGKQWSGARALEALLTDAGELRGPP 150
Query: 152 IEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREE 211
++ V R ++ L L + A L +
Sbjct: 151 LQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQR 210
Query: 212 AKEYIRELVE 221
+ +
Sbjct: 211 LLPVLCQAHG 220
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 75.1 bits (185), Expect = 5e-16
Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 24/192 (12%)
Query: 35 RFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ 94
F +D F+ G K + G ++ + AI Q + +T +
Sbjct: 55 YFHTENPFKDWPGAFE-EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENE 113
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQ 154
+ + L L +N+KA + A + + +++A E ++ I+Q
Sbjct: 114 NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN-----------WIKQ 162
Query: 155 VRDSPVLYTNRALTLLHLQLYDP----------VLPDCDKALRLDEDNMKAHLYKAR--A 202
L N+ + + V +A + D + L
Sbjct: 163 NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222
Query: 203 MHNLGQREEAKE 214
H G+ A +
Sbjct: 223 FHLSGEFNRAID 234
Score = 67.8 bits (166), Expect = 2e-13
Identities = 23/171 (13%), Positives = 45/171 (26%), Gaps = 23/171 (13%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDP----------VLPDCDKALRL 109
+ A I+Q L N+ + + V +A
Sbjct: 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206
Query: 110 DEDNMKAHLYKAR--AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL 167
+ D + L H G+ A + A+ + L+
Sbjct: 207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNA-----------ALTVRPEDYSLWNRLGA 255
Query: 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRE 218
TL + + + +AL + +++ + NLG EA
Sbjct: 256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306
Score = 63.9 bits (156), Expect = 3e-12
Identities = 18/174 (10%), Positives = 51/174 (29%), Gaps = 19/174 (10%)
Query: 59 SGQYEAALVQYDKAIE----QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN- 113
+ ++E A + E + + ++ + +K +N
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 114 ---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL 170
+ G ++ + + P + +T
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-----------GDAEAWQFLGITQA 110
Query: 171 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ + + L L +N+KA + A + N +++A E ++ +++ P
Sbjct: 111 ENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164
Score = 62.8 bits (153), Expect = 9e-12
Identities = 19/194 (9%), Positives = 50/194 (25%), Gaps = 22/194 (11%)
Query: 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPVL----YTNRALTLLHLQLYDPVLPDCDK 105
+ N Q Q + + +K ++P L L + +
Sbjct: 31 RRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEA 90
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
A+ D + +A + + A +++ +E ++
Sbjct: 91 AILQDPGDAEAWQFLGITQAENENEQAAIVALQR-----------CLELQPNNLKALMAL 139
Query: 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
A++ + ++ + K + + ++ L
Sbjct: 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG---- 195
Query: 226 RRKLVENYTQAFEQ 239
+ E Y +A Q
Sbjct: 196 ---VKELYLEAAHQ 206
Score = 55.8 bits (135), Expect = 2e-09
Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 13/148 (8%)
Query: 60 GQYEAALVQYDKAIEQVRDS--PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117
E Y +A Q D P L T + ++ + + AL + ++
Sbjct: 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLW 250
Query: 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDP 177
+ + + EEA E + A+E N ++ ++L Y
Sbjct: 251 NRLGATLANGDRSEEAVEAYTR-----------ALEIQPGFIRSRYNLGISCINLGAYRE 299
Query: 178 VLPDCDKALRLDEDNMKAHLYKARAMHN 205
+ + AL L + A+
Sbjct: 300 AVSNFLTALSLQRKSRNQQQVPHPAISG 327
Score = 49.7 bits (119), Expect = 2e-07
Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 5/106 (4%)
Query: 39 RKARQDIADHFKAN-----GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL 93
+A D + G SG++ A+ ++ A+ + L+ TL +
Sbjct: 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG 260
Query: 94 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQ 139
+ + +AL + +++ + +LG EA
Sbjct: 261 DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 74.7 bits (183), Expect = 9e-16
Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 19/146 (13%)
Query: 16 FFLFLMNDFMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75
+ + F ++ E M E+ + + + G F+ G+Y A++QY K +
Sbjct: 242 IYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEK----GTVYFKGGKYMQAVIQYGKIVSW 297
Query: 76 VRDSP---------------VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120
+ + N A+ L L+ Y + CDKAL LD N K +
Sbjct: 298 LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRR 357
Query: 121 ARAMHSLGQREEAKEYVRQLVEKYPT 146
A + + E AK +++E P
Sbjct: 358 GEAQLLMNEFESAKGDFEKVLEVNPQ 383
Score = 58.5 bits (141), Expect = 3e-10
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELV 220
+ N A+ L L+ Y + CDKAL LD N K + A + + E AK +++
Sbjct: 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378
Query: 221 EKYPT 225
E P
Sbjct: 379 EVNPQ 383
Score = 33.9 bits (77), Expect = 0.042
Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 5/112 (4%)
Query: 30 IDAMRRFEERKARQDIADHFKANGNKAF---QSGQYEAALVQYDKAIEQVRDSPVLYTNR 86
++ E++++ + A N A + +Y A+ DKA+ + R
Sbjct: 298 LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRR 357
Query: 87 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAH--LYKARAMHSLGQREEAKEY 136
L + ++ D +K L ++ N A + + + + Y
Sbjct: 358 GEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIY 409
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 72.4 bits (178), Expect = 1e-15
Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 9/182 (4%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G A ++ AL + + + N L+ +++ D+
Sbjct: 13 GVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 69
Query: 113 NMKAHLYKARAMHSLGQREEA-KEYVRQLVEKYPTR----RKLAIEQVRDSPVLYTNRAL 167
A+ + + + + A K+ L++ + + L ++ + + N A
Sbjct: 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 129
Query: 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227
+ + A + + + + KA + E + + P R
Sbjct: 130 MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFR-PNER 188
Query: 228 KL 229
++
Sbjct: 189 QV 190
Score = 39.3 bits (92), Expect = 4e-04
Identities = 6/97 (6%), Positives = 24/97 (24%), Gaps = 14/97 (14%)
Query: 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLY 175
+ + + A + + + + + N L+
Sbjct: 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSR--------------ICFNIGCMYTILKNM 53
Query: 176 DPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
+++ D+ A+ + + + + A
Sbjct: 54 TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 90
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 72.7 bits (179), Expect = 1e-15
Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 16/183 (8%)
Query: 47 DHFKANGNKAF---QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
A+ A + + A +Y KA+ + + N L + Y+
Sbjct: 69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRL 128
Query: 104 DKALR--LDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161
+A + L + + + + +AKEY + ++ R+ P +
Sbjct: 129 LEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK-----------SLRLNRNQPSV 177
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221
A L + Y P D + N ++ L R R+ A Y +L
Sbjct: 178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237
Query: 222 KYP 224
YP
Sbjct: 238 LYP 240
Score = 66.5 bits (163), Expect = 2e-13
Identities = 25/172 (14%), Positives = 50/172 (29%), Gaps = 13/172 (7%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ H + + K + ++ Y L L + K
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRK 62
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
AL +D + AH A + + + A E R+ A+ + + N
Sbjct: 63 ALEIDPSSADAHAALAVVFQTEMEPKLADEEYRK-----------ALASDSRNARVLNNY 111
Query: 166 ALTLLHLQLYDPVLPDCDKALR--LDEDNMKAHLYKARAMHNLGQREEAKEY 215
L + Y+ +A + L + + + + +AKEY
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163
Score = 34.6 bits (80), Expect = 0.018
Identities = 8/69 (11%), Positives = 21/69 (30%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+ ++ +Y A YD + + + D + RL
Sbjct: 182 ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241
Query: 113 NMKAHLYKA 121
+++ ++A
Sbjct: 242 SLEYQEFQA 250
Score = 26.5 bits (59), Expect = 8.3
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 184 KALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
K + ++ A++ G E+AK +R+ +E P
Sbjct: 28 KTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP 68
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 71.8 bits (177), Expect = 2e-15
Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 23/176 (13%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLP----------- 101
+ G AL + + Y + + L
Sbjct: 46 ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105
Query: 102 DCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161
A R++ HL + LG+R++A+ ++Q A+ + D+P +
Sbjct: 106 VLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ-----------ALA-LEDTPEI 153
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIR 217
+ A L + D L KAL ++ + A A+ G+ EEA
Sbjct: 154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209
Score = 70.3 bits (173), Expect = 6e-15
Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 23/173 (13%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G + + G+Y+AAL +++A+++ P A T L L L +P L + +
Sbjct: 12 GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71
Query: 113 NMKAH-----------LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161
+ + G E+A ++ A L
Sbjct: 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKD-----------AERVNPRYAPL 120
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKE 214
+ R L L D +AL L+ D + A ++G+ +EA
Sbjct: 121 HLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALA 172
Score = 53.3 bits (129), Expect = 6e-09
Identities = 24/154 (15%), Positives = 50/154 (32%), Gaps = 22/154 (14%)
Query: 76 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKE 135
++ + + L L YD L ++AL+ + + +A + AR LG A E
Sbjct: 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE 60
Query: 136 YVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLP-----------DCDK 184
+ + + Y + + L
Sbjct: 61 NGKT-----------LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKD 109
Query: 185 ALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRE 218
A R++ HL + LG+R++A+ +++
Sbjct: 110 AERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143
Score = 40.6 bits (96), Expect = 1e-04
Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 11/112 (9%)
Query: 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL 170
+ + L +++LG+ + A + A+++ P A T L
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFER-----------ALKENPQDPEALYWLARTQL 50
Query: 171 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222
L L +P L + + + ++ + A L ++ E +E + +E+
Sbjct: 51 KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQ 102
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 72.8 bits (179), Expect = 3e-15
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 16/139 (11%)
Query: 23 DFMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAI-------EQ 75
D DA ++ I++ K GN F+S +E A+ +Y K +
Sbjct: 200 DSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA 259
Query: 76 VRDSP---------VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126
D+ N L + + + C +AL +D N KA +A+
Sbjct: 260 AEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG 319
Query: 127 LGQREEAKEYVRQLVEKYP 145
L + ++A +++ E P
Sbjct: 320 LKEYDQALADLKKAQEIAP 338
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 70.4 bits (172), Expect = 3e-14
Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 18/201 (8%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ---LYDPVLPD 102
D + Q E A V ++KA+E+ +P + A+ L +
Sbjct: 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDP 197
Query: 103 CDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY 162
+A+RL+ DN + A +H + + E + +LVE+ A+E+ +
Sbjct: 198 LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEE-------ALEKAPGVTDVL 250
Query: 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH-----LYKARAMHNLGQREEAKEYIR 217
+ A D + KAL +N H Y+A+ + RE R
Sbjct: 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310
Query: 218 ELVEKYPTRRKLVENYTQAFE 238
+L+E V + +A E
Sbjct: 311 KLLELIG---HAVAHLKKADE 328
Score = 59.2 bits (143), Expect = 2e-10
Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 12/184 (6%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+ + ++A+E+ + + A D + KAL +
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279
Query: 113 NMKAH-----LYKARAMHSLGQREEAKEYVRQLVEKYP---TRRKLAIEQVRDSPVLYTN 164
N H Y+A+ + RE R+L+E K A E + + +
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI 339
Query: 165 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL----YKARAMHNLGQREEAKEYIRELV 220
A Y+ K + + L Y ++ + ++A + E V
Sbjct: 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399
Query: 221 EKYP 224
+
Sbjct: 400 KINQ 403
Score = 57.6 bits (139), Expect = 5e-10
Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 37/198 (18%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRD---------SPVLYTNRALTLLHLQLYDPVLPDC 103
GQ EAAL KA E ++ S V + N A H+ V
Sbjct: 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117
Query: 104 DKALRLDE--------DNMKAHLYKARAMHSLGQR--EEAKEYVRQLVEKYPTRRKLAIE 153
DK + E ++ + + G E AK + +EK P
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-------- 169
Query: 154 QVRDSPVLYTNRALTLLHLQ---LYDPVLPDCDKALRLDEDNMKAHLYKARAMHNL---- 206
+P + A+ L + +A+RL+ DN + A +H +
Sbjct: 170 ---KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEG 226
Query: 207 GQREEAKEYIRELVEKYP 224
+ E ++ + E +EK P
Sbjct: 227 EEEGEGEKLVEEALEKAP 244
Score = 40.7 bits (95), Expect = 2e-04
Identities = 23/194 (11%), Positives = 46/194 (23%), Gaps = 28/194 (14%)
Query: 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYD 97
K Q + K A+ KA E + + + A Y+
Sbjct: 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351
Query: 98 PVLPDCDKALRLDEDNMKAHL----YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIE 153
K + + L Y ++ + ++A + + V+
Sbjct: 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK------- 404
Query: 154 QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAK 213
+ LQ L + + +A A + ++A
Sbjct: 405 --------SREKEKMKDKLQKIA------KMRLSKNGADSEALHVLAFLQELNEKMQQAD 450
Query: 214 EYIR---ELVEKYP 224
E E P
Sbjct: 451 EDSERGLESGSLIP 464
Score = 39.1 bits (91), Expect = 7e-04
Identities = 28/132 (21%), Positives = 43/132 (32%), Gaps = 14/132 (10%)
Query: 105 KALRLDEDNMKAHLY--KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY 162
KA + A H GQ E A E +R+ E ++ A + S V +
Sbjct: 40 YRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ--QEHADQAEIRSLVTW 97
Query: 163 TNRALTLLHLQLYDPVLPDCDKALRLDE--------DNMKAHLYKARAMHNLGQR--EEA 212
N A H+ V DK + E ++ + + G E A
Sbjct: 98 GNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERA 157
Query: 213 KEYIRELVEKYP 224
K + +EK P
Sbjct: 158 KVCFEKALEKKP 169
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 70.0 bits (171), Expect = 4e-14
Identities = 27/187 (14%), Positives = 59/187 (31%), Gaps = 26/187 (13%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPV---------LPDC 103
G ++ G +A + A+ ++ L N ++ L LQ +
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ-NLSMVLRQLQTDSGDEHSRHVMDSVRQA 202
Query: 104 DKALRLDEDNMKAHLYKARA--------MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQV 155
A+++D + ++ A + ++A Q + +
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK--------VDRKA 254
Query: 156 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+P L+ NRA + + Y L +A LD + + + + L + E
Sbjct: 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314
Query: 216 IRELVEK 222
+ K
Sbjct: 315 KGKTKPK 321
Score = 63.9 bits (155), Expect = 4e-12
Identities = 23/176 (13%), Positives = 49/176 (27%), Gaps = 30/176 (17%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDP-VLPDCDKALRLDEDNMKAHL 118
+ E L Q ++ + + + L Y P KA++L+ + ++A
Sbjct: 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWN 141
Query: 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPV 178
G A A+ ++ L N ++ L LQ
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSG-----------ALTHCKNKVSLQ-NLSMVLRQLQTDSGD 189
Query: 179 ---------LPDCDKALRLDEDNMKAHLYKARA--------MHNLGQREEAKEYIR 217
+ A+++D + ++ A N ++A
Sbjct: 190 EHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA 245
Score = 55.4 bits (133), Expect = 3e-09
Identities = 33/232 (14%), Positives = 61/232 (26%), Gaps = 27/232 (11%)
Query: 30 IDAMRRFEE-----RKARQDIADHFKANGNKAF---QSGQY-EAALVQYDKAIEQVRDSP 80
D E+ + +A K + Y A V KA++ +
Sbjct: 78 QDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV 137
Query: 81 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQ--REEAKEYVR 138
+ AL + N + + + L +E +V
Sbjct: 138 EAWNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSRHVM 196
Query: 139 QLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL--------HLQLYDPVLPDCDKALRLDE 190
V + KLA++ + L + ++ L +A ++D
Sbjct: 197 DSVRQA----KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252
Query: 191 ---DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
N HL +A EA E + P + + Q E
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF 304
Score = 51.9 bits (124), Expect = 5e-08
Identities = 19/98 (19%), Positives = 34/98 (34%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ G S Q +A Q +K + +P L+ NRA + + Y L +
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
A LD + + + + L + E + K
Sbjct: 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPK 321
Score = 44.2 bits (104), Expect = 2e-05
Identities = 27/185 (14%), Positives = 46/185 (24%), Gaps = 22/185 (11%)
Query: 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLL--------HLQLYDPVLPD 102
+ S ++ Q A++ + L + ++ L
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243
Query: 103 CDKALRLDE---DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159
+A ++D N HL +A EA E Q A P
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ-----------AAALDPAWP 292
Query: 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219
L L +L K +M L A R ++ +
Sbjct: 293 EPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMT 352
Query: 220 VEKYP 224
+E P
Sbjct: 353 LELKP 357
Score = 40.0 bits (93), Expect = 4e-04
Identities = 10/105 (9%), Positives = 26/105 (24%), Gaps = 12/105 (11%)
Query: 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDP-VL 179
+ + E+ + + +++ + L Y P
Sbjct: 75 RKQQDVQEEMEKTLQQMEEVLGSAQ-----------VEAQALMLKGKALNVTPDYSPEAE 123
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
KA++L+ + ++A G A +
Sbjct: 124 VLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK 168
Score = 36.1 bits (83), Expect = 0.008
Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 5/107 (4%)
Query: 30 IDAMRRFEERKARQDIADHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNR 86
+ A + E K + + + + N+A Y AL + +A P
Sbjct: 241 LSAYAQAE--KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298
Query: 87 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEA 133
L L +L K +M L A R ++
Sbjct: 299 QQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQS 345
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 60.9 bits (149), Expect = 4e-12
Identities = 36/140 (25%), Positives = 53/140 (37%), Gaps = 11/140 (7%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN ++ G Y+ A+ Y KA+E S + N YD + KAL LD
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+ +A A + G +EA EY ++ A+E S + N
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQK-----------ALELDPRSAEAWYNLGNAYYKQ 116
Query: 173 QLYDPVLPDCDKALRLDEDN 192
YD + KAL LD +
Sbjct: 117 GDYDEAIEYYQKALELDPRS 136
Score = 56.6 bits (138), Expect = 1e-10
Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 11/133 (8%)
Query: 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142
+ N YD + KAL LD + +A A + G +EA EY ++
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK--- 60
Query: 143 KYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202
A+E S + N YD + KAL LD + +A A
Sbjct: 61 --------ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 112
Query: 203 MHNLGQREEAKEY 215
+ G +EA EY
Sbjct: 113 YYKQGDYDEAIEY 125
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 62.8 bits (152), Expect = 6e-12
Identities = 36/221 (16%), Positives = 69/221 (31%), Gaps = 19/221 (8%)
Query: 8 PLLNLLPTFFLFLMNDFMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALV 67
P L + F +L + R + + R R + F +AAL
Sbjct: 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR 122
Query: 68 QYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSL 127
+ DS LL L D + K DED L A +
Sbjct: 123 TLHQG-----DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAA 177
Query: 128 GQR--EEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185
G ++A +++ +K + +L +A + ++ +A
Sbjct: 178 GGEKLQDAYYIFQEMADKCS-----------PTLLLLNGQAACHMAQGRWEAAEGVLQEA 226
Query: 186 LRLDEDNMKAHLYKARAMHNLGQREEA-KEYIRELVEKYPT 225
L D + + + +LG+ E Y+ +L + + +
Sbjct: 227 LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267
Score = 49.4 bits (117), Expect = 3e-07
Identities = 16/142 (11%), Positives = 49/142 (34%), Gaps = 3/142 (2%)
Query: 6 QSPLLNLLPTFFLFLMNDFMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAA 65
S + L ++ + +++ +++ + A + A + + A
Sbjct: 128 DSLECMAMTVQILLKLDRL--DLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185
Query: 66 LVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 125
+ + ++ + +L +A + ++ +AL D + + +
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245
Query: 126 SLGQREEA-KEYVRQLVEKYPT 146
LG+ E Y+ QL + + +
Sbjct: 246 HLGKPPEVTNRYLSQLKDAHRS 267
Score = 32.8 bits (74), Expect = 0.080
Identities = 11/158 (6%), Positives = 47/158 (29%), Gaps = 28/158 (17%)
Query: 90 LLHLQLYDPVLPDCDKALRLDEDN-MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT-- 146
++ Y + + + + ++ ++ RA + + + ++
Sbjct: 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAV 68
Query: 147 --------------------RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL 186
R+++ + A + Q D L +
Sbjct: 69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG- 127
Query: 187 RLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
D+++ + + L + + A++ ++++ ++
Sbjct: 128 ----DSLECMAMTVQILLKLDRLDLARKELKKMQDQDE 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 59.0 bits (144), Expect = 9e-12
Identities = 16/95 (16%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G + +G Y ++ ++KAI+ + + + L +L+ Y+ + + + + ED
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72
Query: 113 NMKAHLY--KARAMHSLGQREEAKEYVRQLVEKYP 145
++ KA A+ + +E E +
Sbjct: 73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107
Score = 55.9 bits (136), Expect = 1e-10
Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142
Y + Y + +KA++LD + K L K +A+++L + EEA V+
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEA-------VD 61
Query: 143 KYPTRRKLAIEQVRDS--PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192
Y I + D ++ +A L +++ + + +L+ +
Sbjct: 62 CY----NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 49.4 bits (119), Expect = 3e-08
Identities = 15/118 (12%), Positives = 41/118 (34%), Gaps = 13/118 (11%)
Query: 109 LDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALT 168
+ + N + + + + G E+ + + AI+ + + +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEK-----------AIQLDPEESKYWLMKGKA 49
Query: 169 LLHLQLYDPVLPDCDKALRLDEDNMKAHLY--KARAMHNLGQREEAKEYIRELVEKYP 224
L +L+ Y+ + + + + ED ++ KA A+ + +E E +
Sbjct: 50 LYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 58.6 bits (142), Expect = 3e-11
Identities = 15/103 (14%), Positives = 31/103 (30%)
Query: 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 102
+D + A G +Q+G+++ A + + L LY+ L
Sbjct: 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQS 74
Query: 103 CDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
+D + + + A LG + A+
Sbjct: 75 YSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
Score = 58.2 bits (141), Expect = 5e-11
Identities = 16/132 (12%), Positives = 35/132 (26%), Gaps = 11/132 (8%)
Query: 105 KALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTN 164
L ED ++ + G+ ++A++ + L +
Sbjct: 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-----------YDARYFLG 57
Query: 165 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
L LY+ L +D + + + A LG + A+
Sbjct: 58 LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
Query: 225 TRRKLVENYTQA 236
+ +A
Sbjct: 118 AQPAHEALAARA 129
Score = 46.3 bits (110), Expect = 9e-07
Identities = 22/146 (15%), Positives = 31/146 (21%), Gaps = 11/146 (7%)
Query: 69 YDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG 128
D+ +D LD + + L SLG
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 129 QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188
E+A + + P + A L L D A L
Sbjct: 67 LYEQALQSYSY-----------GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115
Query: 189 DEDNMKAHLYKARAMHNLGQREEAKE 214
ARA L K+
Sbjct: 116 AAAQPAHEALAARAGAMLEAVTARKD 141
Score = 43.2 bits (102), Expect = 1e-05
Identities = 21/90 (23%), Positives = 25/90 (27%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A +F G G YE AL Y + P + A L L D
Sbjct: 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYS 111
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKE 135
A L ARA L K+
Sbjct: 112 ARALAAAQPAHEALAARAGAMLEAVTARKD 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 58.7 bits (142), Expect = 3e-11
Identities = 13/103 (12%), Positives = 30/103 (29%)
Query: 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 102
D+ D + + G+ E A V + + A + +
Sbjct: 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADL 92
Query: 103 CDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
A L +++ + + L +AKE +++
Sbjct: 93 YAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
Score = 56.0 bits (135), Expect = 3e-10
Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 11/120 (9%)
Query: 105 KALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTN 164
+ +D M A ++ G+ EEA+ + R L +
Sbjct: 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-----------YNVDYIMG 75
Query: 165 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
A + + A L +++ + + L +AKE +++
Sbjct: 76 LAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
Score = 36.7 bits (85), Expect = 0.002
Identities = 12/119 (10%), Positives = 29/119 (24%), Gaps = 13/119 (10%)
Query: 85 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKY 144
+ A + + D N+ + A Q ++A +
Sbjct: 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV----- 95
Query: 145 PTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 203
A ++ + L L+ + ++ D KA++
Sbjct: 96 ------AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE--KLKIKAQSY 146
Score = 35.5 bits (82), Expect = 0.005
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
D+ Q++ A Y A ++ + L L+ +
Sbjct: 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129
Query: 106 ALRLDEDNMKAHLYKARAM 124
++ D KA++
Sbjct: 130 VIQHSNDE--KLKIKAQSY 146
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 61.2 bits (148), Expect = 4e-11
Identities = 26/189 (13%), Positives = 59/189 (31%), Gaps = 18/189 (9%)
Query: 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL-YDPVLP 101
D + + + E A AIE + ++ R + L LQ +
Sbjct: 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMN 153
Query: 102 DCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161
+ N + ++ + L + E++ ++ + +
Sbjct: 154 YITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-----------KNYHA 202
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ------REEAKEY 215
+ +R + +L+D L D+ L+ D N + + N E +Y
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262
Query: 216 IRELVEKYP 224
E+++ P
Sbjct: 263 TLEMIKLVP 271
Score = 60.5 bits (146), Expect = 6e-11
Identities = 25/170 (14%), Positives = 58/170 (34%), Gaps = 18/170 (10%)
Query: 61 QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120
+ IE+ + ++ +R + + L+ L L D N A ++
Sbjct: 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206
Query: 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPV-- 178
+ + +YV QL+++ VR++ V R + + Y+
Sbjct: 207 QWVIQEFKLWDNELQYVDQLLKE----------DVRNNSVWN-QRYFVISNTTGYNDRAV 255
Query: 179 ----LPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ + ++L N A Y + + G + + +L++ P
Sbjct: 256 LEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQP 304
Score = 50.5 bits (120), Expect = 1e-07
Identities = 23/188 (12%), Positives = 54/188 (28%), Gaps = 29/188 (15%)
Query: 58 QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117
L + Q + + +R + +L+D L D+ L+ D N
Sbjct: 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237
Query: 118 LYKARAMHSLGQ------REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
+ + + E +Y ++++ P + + +L
Sbjct: 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP----------HNESAWNYLKG--ILQ 285
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYK--ARAMHNLGQR---------EEAKEYIRELV 220
+ ++ L L + +L ++ + +A E L
Sbjct: 286 DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILA 345
Query: 221 EKYPTRRK 228
++ T RK
Sbjct: 346 KEKDTIRK 353
Score = 37.7 bits (87), Expect = 0.002
Identities = 14/131 (10%), Positives = 39/131 (29%), Gaps = 12/131 (9%)
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQ 154
+ P+ + + + Y + + E A + R +E
Sbjct: 78 VPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA--------- 128
Query: 155 VRDSPVLYTNRALTLLHLQL-YDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAK 213
+ ++ R + L LQ + + N + ++ + L +
Sbjct: 129 --ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQEL 186
Query: 214 EYIRELVEKYP 224
E+I +++ +
Sbjct: 187 EFIADILNQDA 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 55.3 bits (132), Expect = 7e-10
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 23/126 (18%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP------------VLYTNRALTLLHL 93
A ++ + +G+Y+ A +A+E P + A L L
Sbjct: 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 70
Query: 94 QLYDPVLPDCDKALRLDEDN-----------MKAHLYKARAMHSLGQREEAKEYVRQLVE 142
+ +D L DKAL + A +A A+ LG+ EA +++VE
Sbjct: 71 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130
Query: 143 KYPTRR 148
R+
Sbjct: 131 MIEERK 136
Score = 42.2 bits (98), Expect = 3e-05
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 12/122 (9%)
Query: 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTR-RKLAIEQVRDSPVLYTNRALTLLHLQLYD 176
L A+ G+ +EA R+ +E T + A + + A L L+ +D
Sbjct: 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD 74
Query: 177 PVLPDCDKALRLDEDN-----------MKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
L DKAL + A +A A+ LG+ EA +++VE
Sbjct: 75 EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134
Query: 226 RR 227
R+
Sbjct: 135 RK 136
Score = 31.8 bits (71), Expect = 0.098
Identities = 24/127 (18%), Positives = 37/127 (29%), Gaps = 12/127 (9%)
Query: 21 MNDFMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQS-GQYEAALVQYDKAIEQVRDS 79
+ R++EI EE A +A ++ AL DKA+
Sbjct: 31 AANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90
Query: 80 -----------PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG 128
+RAL L L +P+ K + + E+ K R M
Sbjct: 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150
Query: 129 QREEAKE 135
R
Sbjct: 151 DRIAQLG 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 54.0 bits (130), Expect = 9e-10
Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 1/111 (0%)
Query: 35 RFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ 94
FE + + G + A + ++ ++ + + + LT +
Sbjct: 7 PFEANNPYMYHENPMEE-GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE 65
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
+ + A LD ++ H A + + A +R + P
Sbjct: 66 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116
Score = 47.4 bits (113), Expect = 2e-07
Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 11/112 (9%)
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+ + + +M L EA ++ + + + LT
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEA-----------VCQKEPEREEAWRSLGLTQAEN 64
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ + + A LD ++ H A + N A +R + P
Sbjct: 65 EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116
Score = 28.6 bits (64), Expect = 0.91
Identities = 11/85 (12%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 31 DAMRRFEERKARQDIADHFKAN---GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRA 87
+A FE Q + +A G ++ + A++ + A ++ A
Sbjct: 35 EAALAFE--AVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 92
Query: 88 LTLLHLQLYDPVLPDCDKALRLDED 112
++ + + L L
Sbjct: 93 VSHTNEHNANAALASLRAWLLSQPQ 117
Score = 28.2 bits (63), Expect = 1.1
Identities = 6/62 (9%), Positives = 15/62 (24%)
Query: 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223
L++L L + + + + +A + A +
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 224 PT 225
P
Sbjct: 82 PK 83
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 52.7 bits (127), Expect = 2e-09
Identities = 16/85 (18%), Positives = 31/85 (36%)
Query: 63 EAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122
+A + + + Q D+ +L T + +D LP AL D A + +
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 123 AMHSLGQREEAKEYVRQLVEKYPTR 147
+ G R A++ + +R
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSR 86
Score = 44.6 bits (106), Expect = 2e-06
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 11/96 (11%)
Query: 131 EEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190
+ E + ++ + D+ +L T + +D LP AL D
Sbjct: 2 QAITERLEAMLAQGT-----------DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP 50
Query: 191 DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226
A + + + G R A++ + +R
Sbjct: 51 TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86
Score = 36.2 bits (84), Expect = 0.002
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 2/89 (2%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G + Q++AAL A++ V + TL + L +
Sbjct: 26 GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85
Query: 113 NMKAHLYK--ARAMHSLGQREEAKEYVRQ 139
+ K + L + + + +
Sbjct: 86 RGDQQVVKELQVFLRRLAREDALEHHHHH 114
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 51.6 bits (124), Expect = 5e-09
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVL---YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 116
G A+ Y+KAI L Y T L Y ++ ++
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLA 151
++ A +++LG+ E+ E + +++ + +
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98
Score = 44.3 bits (105), Expect = 2e-06
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 15/113 (13%)
Query: 127 LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL---YTNRALTLLHLQLYDPVLPDCD 183
LG +A Y + AI L Y T L Y
Sbjct: 3 LGLEAQAVPYYEK-----------AIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLA 51
Query: 184 KALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236
++ ++ ++ A ++NLG+ E+ E + +++ + + ++Y QA
Sbjct: 52 NGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI-QSYKQA 103
Score = 39.7 bits (93), Expect = 1e-04
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
G+Y A ++Q + L A+ L +L Y+ + K + D+ Y
Sbjct: 41 GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSY 100
Query: 120 KARAMH 125
K +A+
Sbjct: 101 K-QAIL 105
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 50.1 bits (121), Expect = 2e-08
Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 11/130 (8%)
Query: 78 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYV 137
+S + N YD + KAL LD +N +A A + G +EA EY
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 138 RQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197
++ A+E ++ + N YD + KAL LD +N +A
Sbjct: 67 QK-----------ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 115
Query: 198 YKARAMHNLG 207
A G
Sbjct: 116 NLGNAKQKQG 125
Score = 47.4 bits (114), Expect = 3e-07
Identities = 24/83 (28%), Positives = 37/83 (44%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN ++ G Y+ A+ Y KA+E ++ + N YD + KAL LD +
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 113 NMKAHLYKARAMHSLGQREEAKE 135
N +A A + G +EA E
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIE 98
Score = 39.3 bits (93), Expect = 2e-04
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL 170
++ +A A + G +EA EY ++ A+E ++ + N
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQK-----------ALELDPNNAEAWYNLGNAYY 54
Query: 171 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKE 214
YD + KAL LD +N +A A + G +EA E
Sbjct: 55 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 98
Score = 35.4 bits (83), Expect = 0.003
Identities = 17/59 (28%), Positives = 24/59 (40%)
Query: 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+S + N YD + KAL LD +N +A A + G +EA EY
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Score = 26.2 bits (59), Expect = 5.1
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 47 DHFKANGNK--AFQS-GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL 93
++ +A N A+ G Y+ A+ Y KA+E ++ N
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 50.7 bits (121), Expect = 2e-08
Identities = 15/104 (14%), Positives = 29/104 (27%)
Query: 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 102
D + + +QSG YE A + + + YD +
Sbjct: 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 77
Query: 103 CDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
+D + + A + G+ EA+ + E
Sbjct: 78 YSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Score = 48.4 bits (115), Expect = 2e-07
Identities = 16/132 (12%), Positives = 34/132 (25%), Gaps = 11/132 (8%)
Query: 105 KALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTN 164
+ D ++ A + G E+A + L +
Sbjct: 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-----------YDSRFFLG 60
Query: 165 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ YD + +D + + A + G+ EA+ + E
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 225 TRRKLVENYTQA 236
+ E T+
Sbjct: 121 NXPEFXELSTRV 132
Score = 47.6 bits (113), Expect = 3e-07
Identities = 21/155 (13%), Positives = 34/155 (21%), Gaps = 11/155 (7%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
G + E D+ + A Y+ LD + + L
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
++GQ + A P + A LL
Sbjct: 61 LGACRQAMGQYDLAIHSYSY-----------GAVMDIXEPRFPFHAAECLLQXGELAEAE 109
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKE 214
A L + + R L + KE
Sbjct: 110 SGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKE 144
Score = 39.1 bits (91), Expect = 3e-04
Identities = 17/90 (18%), Positives = 24/90 (26%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ F G GQY+ A+ Y P + A LL
Sbjct: 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFL 114
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKE 135
A L + + R L + KE
Sbjct: 115 AQELIANXPEFXELSTRVSSMLEAIKLKKE 144
Score = 31.8 bits (72), Expect = 0.094
Identities = 9/76 (11%), Positives = 18/76 (23%)
Query: 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223
+ A Y+ LD + + L +GQ + A
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85
Query: 224 PTRRKLVENYTQAFEQ 239
+ + + Q
Sbjct: 86 IXEPRFPFHAAECLLQ 101
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 46.2 bits (109), Expect = 4e-06
Identities = 18/153 (11%), Positives = 43/153 (28%), Gaps = 22/153 (14%)
Query: 57 FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC--------DKALR 108
A + ++ + +AL + P+ D +
Sbjct: 210 GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269
Query: 109 LDEDNMKAHLYKARAMHSL--GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRA 166
L E N + +Y+ +A+ +L G+ +E+ + + I+ + S + Y
Sbjct: 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINT-----------GID-LEMSWLNYVLLG 317
Query: 167 LTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199
+ A L + +
Sbjct: 318 KVYEMKGMNREAADAYLTAFNLRPGANTLYWIE 350
Score = 34.3 bits (78), Expect = 0.025
Identities = 7/97 (7%), Positives = 24/97 (24%), Gaps = 1/97 (1%)
Query: 30 IDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALT 89
+ +++ ++ A G+ + + + I+ + S + Y
Sbjct: 261 NTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGID-LEMSWLNYVLLGKV 319
Query: 90 LLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126
+ A L + + +
Sbjct: 320 YEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQT 356
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 44.9 bits (106), Expect = 4e-06
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL---QLYDPVLPDCDKALRL 109
G Y +L+ Y +A++ ++ LY A L + + DKAL L
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110
Query: 110 DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
D + + A + A +A E +++++
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146
Score = 44.1 bits (104), Expect = 7e-06
Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 28/182 (15%)
Query: 61 QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120
+++A +Y + + + Q + L +R + N +
Sbjct: 2 KWQAVRAEYQRQRDPLHQ-----------FASQQNPEAQLQALQDKIRANPQNSEQWALL 50
Query: 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL---QLYDP 177
+ RQ ++ ++ LY A L + +
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRG-----------ENAELYAALATVLYYQASQHMTAQ 99
Query: 178 VLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT---RRKLVENYT 234
DKAL LD + + A + A +A E +++++ R +LVE+
Sbjct: 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN 159
Query: 235 QA 236
A
Sbjct: 160 MA 161
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 42.3 bits (99), Expect = 3e-05
Identities = 24/153 (15%), Positives = 49/153 (32%), Gaps = 17/153 (11%)
Query: 85 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKY 144
+ LL + L + L KA + Q E A+E + +
Sbjct: 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATI---- 66
Query: 145 PTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 204
+ +D+ L L P L ++ L + DN + A +
Sbjct: 67 -------PLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYN 119
Query: 205 NLGQREEAKEYIRELVEKYPT------RRKLVE 231
+G+ EEA E + +++ ++ ++
Sbjct: 120 QVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152
Score = 34.6 bits (79), Expect = 0.013
Identities = 17/89 (19%), Positives = 34/89 (38%)
Query: 58 QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117
++ Q+E A + +D+ L L P L ++ L + DN +
Sbjct: 52 ETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELA 111
Query: 118 LYKARAMHSLGQREEAKEYVRQLVEKYPT 146
A + +G+ EEA E + +++
Sbjct: 112 CELAVQYNQVGRDEEALELLWNILKVNLG 140
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 39.6 bits (93), Expect = 7e-05
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIE-QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 110
+ G E AL ++ ++ + Y L + L + A+ L+
Sbjct: 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65
Query: 111 EDNMKAHLYK 120
D+ K
Sbjct: 66 PDSPALQARK 75
Score = 29.6 bits (67), Expect = 0.31
Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 10/80 (12%)
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
+ + + G E A + + + ++ P Y L + L
Sbjct: 6 TIKELINQGDIENALQALEEFLQTEPV----------GKDEAYYLMGNAYRKLGDWQKAL 55
Query: 180 PDCDKALRLDEDNMKAHLYK 199
+ A+ L+ D+ K
Sbjct: 56 NNYQSAIELNPDSPALQARK 75
Score = 26.6 bits (59), Expect = 3.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRAL 88
GN + G ++ AL Y AIE DSP L + +
Sbjct: 42 GNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMV 77
Score = 26.2 bits (58), Expect = 4.2
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 164 NRALTLLHLQLYDPVLPDCDKALRLDEDN-MKAHLYKARAMHNLGQREEAKEY 215
L++ + L ++ L+ + +A+ A LG ++A
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNN 57
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 39.3 bits (93), Expect = 8e-05
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 47 DHFKANGNK--AFQS-GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
+ +A N A+ G Y+ A+ Y KA+E ++ + N YD +
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 104 DKALRLDEDNMKAHLYKARAMHSLG 128
KAL LD +N +A A G
Sbjct: 67 QKALELDPNNAEAKQNLGNAKQKQG 91
Score = 31.6 bits (73), Expect = 0.046
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL 170
++ +A A + G +EA EY ++ A+E ++ + N
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQK-----------ALELDPNNAEAWYNLGNAYY 54
Query: 171 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG 207
YD + KAL LD +N +A A G
Sbjct: 55 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 31.2 bits (72), Expect = 0.062
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+ N YD + KAL LD +N +A A + G +EA EY
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Score = 30.1 bits (69), Expect = 0.14
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQ 139
+ N YD + KAL LD +N +A A + G +EA EY ++
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 41.7 bits (98), Expect = 1e-04
Identities = 28/187 (14%), Positives = 63/187 (33%), Gaps = 29/187 (15%)
Query: 53 GNKAFQSGQYEAALVQYDKAIE---QVRDSP---VLYTNRALTLLHLQLYDPVLPDCDKA 106
G F +Y A+ Y +A + V D + A H++ + +A
Sbjct: 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167
Query: 107 LRLDEDNMKAHLYKARAMHSLG-------QREEAKEYVRQ---LVEKYPTRRKLAIEQVR 156
L + +++ + +++ + ++A ++ L R +AI
Sbjct: 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI---- 223
Query: 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK-----ARAMHNLGQREE 211
N A + + KA ++ + + L K + + GQ ++
Sbjct: 224 ----SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQK 279
Query: 212 AKEYIRE 218
A ++I E
Sbjct: 280 AFQFIEE 286
Score = 37.5 bits (87), Expect = 0.002
Identities = 25/207 (12%), Positives = 64/207 (30%), Gaps = 22/207 (10%)
Query: 32 AMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTL- 90
A + + A+ + Q ++ +A++ ++ P+ +L
Sbjct: 127 AEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186
Query: 91 ------LHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH-------SLGQREEAKEYV 137
+ YD LP + AL L D ++ + A ++ G + A E+
Sbjct: 187 VIAGNYDDFKHYDKALPHLEAALELAMD-IQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245
Query: 138 RQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-NMKAH 196
++ + + P + + TL ++ L + K +
Sbjct: 246 QKAAKVSREKVP------DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299
Query: 197 LYKARAMHNLGQREEAKEYIRELVEKY 223
+ + + + I +L+ +
Sbjct: 300 KELFLFLQAVYKETVDERKIHDLLSYF 326
Score = 26.7 bits (59), Expect = 7.7
Identities = 10/116 (8%), Positives = 34/116 (29%), Gaps = 18/116 (15%)
Query: 110 DEDNMKAHLYKARAMHSLGQREEAKEYVRQ---LVEKYPTRRKLAIEQVRDSPVLYTNRA 166
+ ++ + EA Y R+ + + A + A
Sbjct: 97 GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAE--------FHFKVA 148
Query: 167 LTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG-------QREEAKEY 215
H++ + +AL + +++ + +++ + ++A +
Sbjct: 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPH 204
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 40.7 bits (96), Expect = 2e-04
Identities = 31/207 (14%), Positives = 65/207 (31%), Gaps = 31/207 (14%)
Query: 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDSP------VLYTNRALTLLHLQLYDPVLPDCD 104
A + G +D +Q S + L + +
Sbjct: 13 AENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQ 72
Query: 105 KALRLDEDNMK--AHLYK--ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAI-EQVRDSP 159
A++ ++++ + +Y A LG +A +Y + L + + + D
Sbjct: 73 AAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD---------LTLAKSMNDRL 123
Query: 160 ---VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG-------QR 209
N TL + +D C++ L L + L + RA++NLG +
Sbjct: 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQ-LGDRLSEGRALYNLGNVYHAKGKH 182
Query: 210 EEAKEYIRELVEKYPTRRKLVENYTQA 236
+ + + + VE Y +
Sbjct: 183 LGQRNPGKFGDDVKEALTRAVEFYQEN 209
Score = 27.7 bits (62), Expect = 3.7
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 53 GNKAFQSGQYEAALVQYDKAIE---QVRDSPVL---YTNRALTLLHLQLYDPVLPDCDKA 106
GN GQ+E A Y + + ++ + V + T L ++ + ++
Sbjct: 270 GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329
Query: 107 LRLDEDNMKAHLYKARAMHSL-------GQREEAKEYVRQ 139
L + ++ + + +ARA SL G E A +Y Q
Sbjct: 330 LAIAQE-LGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368
Score = 26.5 bits (59), Expect = 8.4
Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 21/109 (19%)
Query: 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAI-EQVRDSPVL---YTNRALTLLHLQLYD 176
+ LGQ E+A E+ ++ LA+ ++ + V + T L ++
Sbjct: 270 GNSHIFLGQFEDAAEHYKR---------TLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320
Query: 177 PVLPDCDKALRLDEDNMKAHLYKARAMHNL-------GQREEAKEYIRE 218
+ ++ L + ++ + + +ARA +L G E A +Y +
Sbjct: 321 TAIEYHNRHLAIAQE-LGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 40.6 bits (95), Expect = 3e-04
Identities = 23/212 (10%), Positives = 68/212 (32%), Gaps = 32/212 (15%)
Query: 30 IDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP------VLY 83
+ + + + R G +Y +A+ + KA ++ +
Sbjct: 87 LLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFF 146
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM-------HSLGQREEAKEY 136
+ + +++ + +A + +++ ++ + L Q E+A +
Sbjct: 147 FKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISH 206
Query: 137 VRQ---LVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 193
++ + E + + N L Y+ +P +A+ + E++
Sbjct: 207 FQKAYSMAEAEKQPQLMGR--------TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES- 257
Query: 194 KAHLYKARAMHNL-------GQREEAKEYIRE 218
+A + G+ ++A EY +
Sbjct: 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 37.6 bits (88), Expect = 4e-04
Identities = 9/68 (13%), Positives = 23/68 (33%)
Query: 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYI 216
+ P A L L ++ + D D + + + + L + ++A +
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64
Query: 217 RELVEKYP 224
+ +E
Sbjct: 65 AQGIEVAR 72
Score = 37.6 bits (88), Expect = 4e-04
Identities = 10/68 (14%), Positives = 23/68 (33%)
Query: 78 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYV 137
+ P A L L ++ + D D + + + + L + ++A +
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64
Query: 138 RQLVEKYP 145
Q +E
Sbjct: 65 AQGIEVAR 72
Score = 36.1 bits (84), Expect = 0.001
Identities = 7/68 (10%), Positives = 19/68 (27%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+ + AL +++ +E D Y + L D + + + + +
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73
Query: 113 NMKAHLYK 120
Sbjct: 74 EGTQKDLS 81
Score = 33.4 bits (77), Expect = 0.014
Identities = 12/104 (11%), Positives = 26/104 (25%), Gaps = 13/104 (12%)
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
++ A+ A +LVE P D Y +
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDP-----------DYVGTYYHLGKLYER 53
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
L D + + + + + + + + E E+
Sbjct: 54 LDRTDDAIDTYAQGIEVAREEGTQKDLS--ELQDAKLKAEGLEH 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.001
Identities = 40/208 (19%), Positives = 64/208 (30%), Gaps = 69/208 (33%)
Query: 83 YTNRALTLLH-----------------LQLYD---PVLPDCDKALRLD-EDNMKAHLYKA 121
Y+ R LTL H QL + +LP+ + D E A L
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV-G 62
Query: 122 RAMHSLGQREEAKEYVRQLVEKYPTRR-----KLAIEQVRDSPVLYTNRALTLLHLQLYD 176
+ + YV LVE + L + + + L N +H L
Sbjct: 63 KFLG----------YVSSLVEPSKVGQFDQVLNLCLTEFENC-YLEGND----IH-ALAA 106
Query: 177 PVLPDCDKALRLDEDNMKAHLYKARAMHN----------L---GQREEAK---------- 213
+L + D L ++ +K + AR M L A+
Sbjct: 107 KLLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 214 --EYIRELVEKYPTRRKLVENYTQAFEQ 239
+Y EL + Y T LV + + +
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Score = 34.3 bits (78), Expect = 0.040
Identities = 33/181 (18%), Positives = 64/181 (35%), Gaps = 58/181 (32%)
Query: 64 AALVQYDKAIEQVRDSPVLYTN--RALTLL-------HLQLYDPVLPDCDKALRLDEDNM 114
A+ AI + + + +A+T+L + + Y P+ + ED++
Sbjct: 279 TAV-----AIAETDSWESFFVSVRKAITVLFFIGVRCY-EAY----PNTSLPPSILEDSL 328
Query: 115 KAHLYKARAMHSL-G-QREEAKEYVRQLVEKYPTRRKLAIEQV--RDSPVLYTNRALTLL 170
+ + M S+ +E+ ++YV + P +++ I V + V+ + +L
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV-SGPPQSLY 387
Query: 171 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP-TRRKL 229
L L LR KA+A L Q + P + RKL
Sbjct: 388 GLNL----------TLR-----------KAKAPSGLDQS------------RIPFSERKL 414
Query: 230 V 230
Sbjct: 415 K 415
Score = 32.3 bits (73), Expect = 0.14
Identities = 34/167 (20%), Positives = 53/167 (31%), Gaps = 67/167 (40%)
Query: 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM---HSLGQREEAKEY--- 136
+T ALTL+ + + L+ L A A HSLG EY
Sbjct: 1731 FTQPALTLMEKAAF--------EDLK------SKGLIPADATFAGHSLG------EYAAL 1770
Query: 137 -----VRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL--QLYDPVLPDCDKALRLD 189
V ++IE + ++ +P D+ R +
Sbjct: 1771 ASLADV------------MSIES-----------LVEVVFYRGMTMQVAVPR-DELGRSN 1806
Query: 190 EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR-RKLVE--NY 233
M A + R + Q E ++ +VE+ R LVE NY
Sbjct: 1807 YG-MIA-INPGRVAASFSQ-----EALQYVVERVGKRTGWLVEIVNY 1846
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 37.2 bits (86), Expect = 0.003
Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 26/219 (11%)
Query: 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIE------QVRDSPVLYTNRALTLLHLQLY 96
A + + Q E A Y + E + + + + L LQ
Sbjct: 33 DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM 92
Query: 97 DPVLPDCDKALRLDEDNMK-----AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLA 151
+ +KA + +N L +A + +A +Q +
Sbjct: 93 PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFE-----N 147
Query: 152 IEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM------KAHLYKARAMHN 205
E++R + L + L+ Q +D K + ++ K + + +
Sbjct: 148 EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH 207
Query: 206 LGQREEAKEYIRELVEKYPTRR----KLVENYTQAFEQE 240
A++ +RE +E+ QA++++
Sbjct: 208 RADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQ 246
Score = 32.9 bits (75), Expect = 0.066
Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 13/123 (10%)
Query: 32 AMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV------LYTN 85
A + E A K + A+ Y +A + L
Sbjct: 102 ASVMYVENGTPDTAAMALD-RAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGK 160
Query: 86 RALTLLHLQLYDPVLPDCDKALRLDEDNM------KAHLYKARAMHSLGQREEAKEYVRQ 139
+ L+ Q +D K + ++ K + + A++ VR+
Sbjct: 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220
Query: 140 LVE 142
Sbjct: 221 SYS 223
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 36.7 bits (85), Expect = 0.004
Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 21/180 (11%)
Query: 43 QDIADHFKANG---NKAFQSGQYEAALV------QYDKAIEQVRDSPV-LYTNRALTLLH 92
Q IA F FQ+GQ ++ V L +A+ L+
Sbjct: 70 QMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVLPREEELXAQQAMQLMQ 129
Query: 93 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAI 152
Y LP A +L N + L A + +L + E+A+ + +
Sbjct: 130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTI-----------P 178
Query: 153 EQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
Q +D+ + LL P + + + + ++ A +H +G+ EEA
Sbjct: 179 LQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEA 238
Score = 26.7 bits (59), Expect = 6.3
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219
+A+ L+ Y LP A +L N + L A + L + E+A+ + +
Sbjct: 122 QQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTI 177
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 34.9 bits (81), Expect = 0.011
Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 20/177 (11%)
Query: 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 115
AF++ Y A Q + + + +D + +
Sbjct: 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQK-SG 60
Query: 116 AHLYKARAMHSLG-------QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALT 168
H + RA+H +G + A+ + E L + + S Y A
Sbjct: 61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERE---LLASLPEDPLAASANAY-EVATV 116
Query: 169 LLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG-------QREEAKEYIRE 218
LH + +K+L + + A A LG EA+++
Sbjct: 117 ALHFGDLAGARQEYEKSLVYAQQ-ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172
Score = 28.8 bits (65), Expect = 1.1
Identities = 16/122 (13%), Positives = 36/122 (29%), Gaps = 15/122 (12%)
Query: 32 AMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAI---EQVRDSP----VLYT 84
++ ++ G +G ++AA + + + + P
Sbjct: 52 LQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAY 111
Query: 85 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG-------QREEAKEYV 137
A LH + +K+L + + A A LG EA+++
Sbjct: 112 EVATVALHFGDLAGARQEYEKSLVYAQQ-ADDQVAIACAFRGLGDLAQQEKNLLEAQQHW 170
Query: 138 RQ 139
+
Sbjct: 171 LR 172
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.015
Identities = 30/278 (10%), Positives = 80/278 (28%), Gaps = 77/278 (27%)
Query: 2 SIPLQ----SPL-LNLLPTFF--LFLMNDFMRSVEIDAMRRFEERKARQDIADHFKANGN 54
+P + +P L+++ D + V D + + + +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-----IIESSLNVLEPAEY 371
Query: 55 KAFQSGQYEA-ALVQYDKAI-EQVRDSPVLYTNRALTLLHLQL--YDP--VLPDCDKALR 108
+ ++ ++ I + L+L+ + D V+ K
Sbjct: 372 RK----MFDRLSVFPPSAHIPTIL-----------LSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 109 LDEDNMKAHLYKARAMHSL-----GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV--- 160
+++ ++ + + S+ + E R +V+ Y + + + +
Sbjct: 417 VEKQPKESTIS----IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY--------KARA---------- 202
Y++ HL + + ++ K R
Sbjct: 473 FYSHIG---HHL----------KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 203 -MHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
++ L Q + K YI + KY + ++ E+
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Score = 31.4 bits (70), Expect = 0.30
Identities = 35/256 (13%), Positives = 76/256 (29%), Gaps = 72/256 (28%)
Query: 23 DFMRSV----EIDAMRRFEERKARQD-IADHFKANGNKAFQSGQYEAALVQYDKAIEQV- 76
D +S+ EID + ++ + + + + K +E+V
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE------------MVQKFVEEVL 87
Query: 77 -RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQ------ 129
+ L + + + P + ++ + +++ Q
Sbjct: 88 RINYKFLMSP-----IKTEQRQP------------SMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 130 --REEAKEYVRQ-LVEKYPTRR----------K--LAIEQVRDSPVLYTNRA----LTLL 170
R + +RQ L+E P + K +A++ V L L
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 171 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQR-EEAKEYIRELVEKYPTRRKL 229
+ + VL + +L ++ N+ R + +R L++ P L
Sbjct: 191 NCNSPETVL---EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 230 -----VENYT--QAFE 238
V+N AF
Sbjct: 248 LVLLNVQNAKAWNAFN 263
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 33.1 bits (76), Expect = 0.028
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Query: 55 KAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRAL-----TLLHLQLYDPVLPDCDKALRL 109
A ++G+Y+ A + +E + YT AL + + + +
Sbjct: 11 DALKNGKYDDASQLFLSFLELYPNGV--YTPNALYWLGESYYATRNFQLAEAQFRDLVSR 68
Query: 110 DEDNMK---AHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
+ K L + + G+ EA++ ++Q+ +YP
Sbjct: 69 YPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107
Score = 32.0 bits (73), Expect = 0.054
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 195 AHLYKARAMHNLGQREEAKEYIRELVEKYP 224
L + + G+ EA++ ++++ +YP
Sbjct: 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 33.8 bits (77), Expect = 0.037
Identities = 17/177 (9%), Positives = 43/177 (24%), Gaps = 11/177 (6%)
Query: 56 AFQSGQYEAALVQYDKAIE-----QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 110
+ + + A IE Q + L D ++ L
Sbjct: 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204
Query: 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL 170
+ + + A + K + N A +
Sbjct: 205 GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264
Query: 171 HLQLYDPVLPDCDKALRLDE------DNMKAHLYKARAMHNLGQREEAKEYIRELVE 221
L ++P ++ D + L + G++ +A+ + + ++
Sbjct: 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 32.3 bits (74), Expect = 0.11
Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 37/212 (17%)
Query: 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIE---QVRDSP---VLYTNRALTLLH 92
+ + ++ + GN F Y AL + + + D N TL
Sbjct: 40 TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 99
Query: 93 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAM-------HSLGQREEAKEYVRQLVEKYP 145
L +D + C + L + + + + +ARA+ H+ G+
Sbjct: 100 LGNFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158
Query: 146 TRRK-----------LAI-EQVRDSP---VLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190
R L++ + D + N T L + + ++ L + +
Sbjct: 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218
Query: 191 DNMKAHLYKARAMHNLG-------QREEAKEY 215
+ + RA NLG + E A EY
Sbjct: 219 E-FGDKAAERRAYSNLGNAYIFLGEFETASEY 249
Score = 30.3 bits (69), Expect = 0.53
Identities = 31/200 (15%), Positives = 66/200 (33%), Gaps = 35/200 (17%)
Query: 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAI---EQVRDSP---VLYTNRALTLLHLQLY 96
+AA+ Y++ + + D + N T L +
Sbjct: 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 203
Query: 97 DPVLPDCDKALRLDEDNMKAHLYKARAMH-------SLGQREEAKEYVRQLVEKYPTRRK 149
+ ++ L + ++ + RA LG+ E A EY ++
Sbjct: 204 RDAVIAHEQRLLIAKE-FGDKAAERRAYSNLGNAYIFLGEFETASEYYKK---------T 253
Query: 150 LAI-EQVRDSPVL---YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN 205
L + Q++D V + T LQ Y+ + K L + ++ + + + RA +
Sbjct: 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-LNDRIGEGRACWS 312
Query: 206 LG-------QREEAKEYIRE 218
LG ++A + +
Sbjct: 313 LGNAYTALGNHDQAMHFAEK 332
Score = 30.0 bits (68), Expect = 0.74
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 10/97 (10%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSP----VLYTNRALTLLHLQLYDPVLPDCDKAL- 107
G + +SG A + ++ A++ + +Y+ +L Y L L
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75
Query: 108 ---RLDEDNMKAHLYK--ARAMHSLGQREEAKEYVRQ 139
+ + +A + LG +EA ++
Sbjct: 76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 30.9 bits (69), Expect = 0.36
Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 13/118 (11%)
Query: 32 AMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV-------LYT 84
+ + A N ++G + + +++ ++Q+ +
Sbjct: 141 LLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200
Query: 85 NRALTLLHLQLYDPVLPDCDKALRL----DEDNMKAHLY--KARAMHSLGQREEAKEY 136
N A L Y+ L +KA+ + + + LY + + L E E
Sbjct: 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED 258
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 30.3 bits (69), Expect = 0.46
Identities = 31/200 (15%), Positives = 66/200 (33%), Gaps = 35/200 (17%)
Query: 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAI---EQVRDSP---VLYTNRALTLLHLQLY 96
+AA+ Y++ + + D + N T L +
Sbjct: 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 199
Query: 97 DPVLPDCDKALRLDEDNMKAHLYKARAMH-------SLGQREEAKEYVRQLVEKYPTRRK 149
+ ++ L + ++ + RA LG+ E A EY ++
Sbjct: 200 RDAVIAHEQRLLIAKE-FGDKAAERRAYSNLGNAYIFLGEFETASEYYKK---------T 249
Query: 150 LAI-EQVRDSP---VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN 205
L + Q++D + T LQ Y+ + K L + ++ +K + + RA +
Sbjct: 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-LKDRIGEGRACWS 308
Query: 206 LG-------QREEAKEYIRE 218
LG ++A + +
Sbjct: 309 LGNAYTALGNHDQAMHFAEK 328
Score = 29.5 bits (67), Expect = 1.0
Identities = 25/195 (12%), Positives = 53/195 (27%), Gaps = 33/195 (16%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSP----VLYTNRALTLLHLQLYDPVLPDCDKAL- 107
G + +SG A + ++ A++ + +Y+ +L Y L L
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71
Query: 108 ---RLDEDNMKAHLYK--ARAMHSLGQREEAKEYVRQ---LVEKYPTRRKLA-------- 151
+ + +A + LG +EA ++ + + + A
Sbjct: 72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 131
Query: 152 ----IEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG 207
+ P + ++ L L + + RA NLG
Sbjct: 132 VYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA-LGDRAAQGRAFGNLG 190
Query: 208 -------QREEAKEY 215
+A
Sbjct: 191 NTHYLLGNFRDAVIA 205
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 28.3 bits (64), Expect = 1.3
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 53 GNKAFQSGQYEAALVQYDKAI---EQVRDSP---VLYTNRALTLLHLQLYDPVLPDCDKA 106
GN G++E A Y K + Q++D + T LQ Y+ + K
Sbjct: 56 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115
Query: 107 LRLDEDNMKAHLYKARAMHSLG-------QREEAKEYVRQ 139
L + ++ +K + + RA SLG ++A + +
Sbjct: 116 LAIAQE-LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154
Score = 28.3 bits (64), Expect = 1.5
Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 46/161 (28%)
Query: 68 QYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK--ARAMH 125
+ A+ + L + A + + Y A
Sbjct: 24 NFRDAVI--------AHEQRLLI---------------AKEFGDKAAERIAYSNLGNAYI 60
Query: 126 SLGQREEAKEYVRQLVEKYPTRRKLAI-EQVRDSP---VLYTNRALTLLHLQLYDPVLPD 181
LG+ E A EY ++ L + Q++D + T LQ Y+ +
Sbjct: 61 FLGEFETASEYYKK---------TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 111
Query: 182 CDKALRLDEDNMKAHLYKARAMHNLG-------QREEAKEY 215
K L + ++ +K + + RA +LG ++A +
Sbjct: 112 HLKHLAIAQE-LKDRIGEGRACWSLGNAYTALGNHDQAMHF 151
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 28.5 bits (63), Expect = 2.1
Identities = 22/165 (13%), Positives = 46/165 (27%), Gaps = 12/165 (7%)
Query: 71 KAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR-LDEDNMKAHLYKARAMHSLGQ 129
+A + + S L + D ++A+ L + NM + A S +
Sbjct: 55 EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 114
Query: 130 REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 189
E+ +L+ D ++Y + KA
Sbjct: 115 YEKVHSIYNRLLAIEDI----------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164
Query: 190 EDNMKAHLYKARA-MHNLGQREEAKEYIRELVEKYPTRRKLVENY 233
++ A + + A + ++KY + V Y
Sbjct: 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY 209
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase,
ATP-binding, microtubule INT and trafficking domain,
nucleotide-binding; HET: SRT; 2.40A {Sulfolobus
solfataricus} PDB: 2v6y_B*
Length = 83
Score = 26.5 bits (58), Expect = 2.6
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYD 97
+D+A + KA + G+ E A+ Y KAIE + VLY + Q+ +
Sbjct: 8 EDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMIN 62
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 4.0
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 16/41 (39%)
Query: 149 KLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 189
K A+++++ S L+LY D AL +
Sbjct: 19 KQALKKLQAS-------------LKLYA---DDSAPALAIK 43
Score = 26.5 bits (57), Expect = 6.2
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 16/40 (40%)
Query: 71 KAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 110
+A+++++ S L+LY D AL +
Sbjct: 20 QALKKLQAS-------------LKLYA---DDSAPALAIK 43
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 27.1 bits (61), Expect = 5.0
Identities = 25/195 (12%), Positives = 61/195 (31%), Gaps = 35/195 (17%)
Query: 60 GQYEAALVQYDKAIEQVR-----DSP---VLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
G+Y+ A +A+E D P N AL + Y+ V +AL + +
Sbjct: 125 GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184
Query: 112 DNM-KAHLYKARAMHSL-------GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
+ A+ ++L G+ ++A+ ++++ + + ++ ++
Sbjct: 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR--AHEREFGSVDDENKPIWM 242
Query: 164 NRALTLLHLQLYDPVLPDCDKALR---LDEDNMKAHLYKARAMHNL-------GQREEAK 213
+ + D + NL G+ E A+
Sbjct: 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVD----SPTVTTTLKNLGALYRRQGKFEAAE 298
Query: 214 EYIRELVEKYPTRRK 228
+ +R++
Sbjct: 299 TLEEAAMR---SRKQ 310
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 27.2 bits (61), Expect = 5.1
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 4/105 (3%)
Query: 128 GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC--DKA 185
G +KE + L +YPT + P R T + D +
Sbjct: 225 GNSPMSKEKMDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPG 284
Query: 186 LRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLV 230
+ + L + L + + IR+ V+ KL+
Sbjct: 285 YGIWLSGFRDLLLNKESNKFL--ADFVAKKIRQRVKDPVVAEKLI 327
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle,
protein structure initiative II (PSI II), structural
genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Length = 295
Score = 27.2 bits (61), Expect = 5.4
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 9/50 (18%)
Query: 131 EEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL---------YTNRALTLLH 171
EEA + V+ + K +E R+ P T L L
Sbjct: 239 EEALKKSIDCVKLHVAAAKETLETFRECPARDKLFQITDYITVDMLENLE 288
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 26.9 bits (59), Expect = 6.3
Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 1/92 (1%)
Query: 58 QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE-DNMKA 116
G +E A Q ++I+ + + + Q A L E + +
Sbjct: 43 IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTK 102
Query: 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRR 148
L E+ E Q+ E +
Sbjct: 103 SLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134
Score = 26.5 bits (58), Expect = 9.5
Identities = 7/62 (11%), Positives = 18/62 (29%)
Query: 179 LPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238
L +A++ + + G E A E + + ++ +P +
Sbjct: 17 LELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 76
Query: 239 QE 240
Sbjct: 77 AA 78
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene,
replication block, mutagenesis, transferase/electron
transport/DNA complex; HET: DNA 2DT 8FG; 2.10A
{Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB:
1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A*
1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A*
1zyq_A* 2ajq_A*
Length = 698
Score = 27.2 bits (60), Expect = 6.3
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 209 REEAKEYIRELVEKYPTRRKLVENYTQAFEQE 240
+E KE ++ +E P L E+ Q +
Sbjct: 539 KERGKELKKKFLENTPAIAALRESIQQTLVES 570
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 26.5 bits (59), Expect = 7.6
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 109 LDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
D ++A + + R + E + +EK
Sbjct: 252 ATRDVVEATSHAEVLLREAMPRPDVIEGIVSFLEK 286
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha; geranylgeranyltrasferase, ggtase,
ggtase-I, PGGT, prenyltransferase, farnesyltransferase;
HET: B3P GRG; 1.80A {Candida albicans}
Length = 306
Score = 26.6 bits (58), Expect = 7.7
Identities = 25/217 (11%), Positives = 57/217 (26%), Gaps = 43/217 (19%)
Query: 55 KAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD-------CDKAL 107
K + L ++ + ++ R L + + + D + L
Sbjct: 78 KNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAML 137
Query: 108 RLDEDNMKAHLYKARAMHSLGQREEAKE--YVRQLVEKYPT--------------RRKLA 151
D N Y+ + + +AKE +V ++++ ++ LA
Sbjct: 138 SSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA 197
Query: 152 IEQVRDSPVLYTNRALTL-------------------LHLQLYDPVLPDCDKALRLDEDN 192
+ D + Y + + + + +
Sbjct: 198 TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS 257
Query: 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKY-PTRRK 228
A A+ + E++ L KY P R
Sbjct: 258 SFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSN 294
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 26.6 bits (59), Expect = 8.8
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 131 EEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159
EE K +R L++ PT+R + I + + P
Sbjct: 296 EEVKMLIRNLLKTEPTQR-MTITEFMNHP 323
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 26.5 bits (59), Expect = 9.3
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 11/45 (24%)
Query: 107 LRLDEDNMKAHLYKA-------RAMHSLGQ----REEAKEYVRQL 140
+ +DE+ + +L KA M+ + + R EA + +++
Sbjct: 334 VYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEV 378
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.384
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,728,914
Number of extensions: 228146
Number of successful extensions: 1952
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1384
Number of HSP's successfully gapped: 415
Length of query: 240
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,160,982
Effective search space: 619986318
Effective search space used: 619986318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)