BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17416
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1
pdb|3F3S|B Chain B, The Crystal Structure Of Human Lambda-Crystallin, Cryl1
Length = 313
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 100/166 (60%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G+IG++WAM+FAS G++V LYD+ +QI NA I+ ++ Q G LKGSLS EEQ L
Sbjct: 12 GVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQLSL 71
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
ISG P ++E +E A+ IQE VPE L++K +++ +D +
Sbjct: 72 ISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAG 131
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
H Q IVAHPVNPPY+IPLVE+VP T+ + RT +M +IG
Sbjct: 132 LVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIG 177
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTH 60
P ++E +E A+ IQE VPE L++K +++ +D + H
Sbjct: 75 CPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVH 134
Query: 61 RSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNR 120
Q IVAHPVNPPY+IPLVE+VP T+ + RT +M +IG P+ + E+ GF LNR
Sbjct: 135 VKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEVAGFVLNR 194
Query: 121 I-HGLIGQAWAMI 132
+ + +I +AW ++
Sbjct: 195 LQYAIISEAWRLV 207
>pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
pdb|3ADP|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
(
Length = 319
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 93/166 (56%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GL+G++WAM+FAS G++V LYD+ QI A I+ ++ Q G LKGSLS EEQ L
Sbjct: 15 GLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSL 74
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
IS L E +E + IQE VPE L +K +++ +D +
Sbjct: 75 ISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTG 134
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
H Q IVAHPVNPPY+IPLVE+VP TS + RT +M +IG
Sbjct: 135 LAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIG 180
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Query: 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQ 63
L E +E + IQE VPE L +K +++ +D + H Q
Sbjct: 81 LAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQ 140
Query: 64 FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI-H 122
IVAHPVNPPY+IPLVE+VP TS + RT +M +IG PV + EI GF LNR+ +
Sbjct: 141 CIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQY 200
Query: 123 GLIGQAWAMI 132
+I +AW ++
Sbjct: 201 AIISEAWRLV 210
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 4/170 (2%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEE 178
GL+G A + A+ G+ V L D + + +K I+ +L+ +K + G E+
Sbjct: 24 GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEK 83
Query: 179 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXX 238
IS + + + E++ E L++K ++++ +D F
Sbjct: 84 TLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTSSLQITS 143
Query: 239 XXEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+T + +F H NP + LVE+V TS++ + + +G
Sbjct: 144 LANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLG 193
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 13 FIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAHPVNP 72
+ E++ E L++K ++++ +D F +T + +F H NP
Sbjct: 103 LVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATTRQDRFAGLHFFNP 162
Query: 73 PYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+ LVE+V TS++ + + +G PV+ + GF +NR+
Sbjct: 163 VPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPVSC-KDTPGFIVNRL 210
>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
Length = 310
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 70/170 (41%), Gaps = 4/170 (2%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEE 178
GL+G A + A+ G+ V L D + + +K I+ +L+ +K + G E+
Sbjct: 24 GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDECVEK 83
Query: 179 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXX 238
I+ + + + E++ E L++K+++++ +D F
Sbjct: 84 TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS 143
Query: 239 XXEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+T + +F H NP + LVE++ TS++ + +G
Sbjct: 144 IANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG 193
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 13 FIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAHPVNP 72
+ E++ E L++K+++++ +D F +T + +F H NP
Sbjct: 103 LVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNP 162
Query: 73 PYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+ LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 163 VPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSC-KDTPGFIVNRL 210
>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E12|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E13|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
Length = 283
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 66/167 (39%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G++G A A G+ V+ YD+ ++ ++ AK + Y ++ + ++ G
Sbjct: 13 GVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGG 72
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
I + L + ++DA + E+VPE L +K +Y + +
Sbjct: 73 IRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGY 132
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGM 289
+ +F+ H N + E++ T V + E + IGM
Sbjct: 133 TGRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAIGM 179
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 46/118 (38%)
Query: 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQ 63
L + ++DA + E+VPE L +K +Y + ++ +
Sbjct: 79 LAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDK 138
Query: 64 FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
F+ H N + E++ T V + E + IGM P+ L E G+ LN +
Sbjct: 139 FLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSL 196
>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSO|B Chain B, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 70/170 (41%), Gaps = 4/170 (2%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEE 178
GL+G A + A+ G+ V L D + + +K I+ +L+ +K + G E+
Sbjct: 24 GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEK 83
Query: 179 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXX 238
I+ + + + E++ E L++K+++++ +D F
Sbjct: 84 TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTASLQITS 143
Query: 239 XXEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+T + +F H NP + LVE++ TS++ + +G
Sbjct: 144 IANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG 193
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 13 FIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAHPVNP 72
+ E++ E L++K+++++ +D F +T + +F H NP
Sbjct: 103 LVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTASLQITSIANATTRQDRFAGLHFFNP 162
Query: 73 PYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+ LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 163 VPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSC-KDTPGFIVNRL 210
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 70/170 (41%), Gaps = 4/170 (2%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEE 178
GL+G A + A+ G+ V L D + + +K I+ +L+ +K + G E+
Sbjct: 24 GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEK 83
Query: 179 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXX 238
I+ + + + E++ E L++K+++++ +D F
Sbjct: 84 TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS 143
Query: 239 XXEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+T + +F H NP + LVE++ TS++ + +G
Sbjct: 144 IANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG 193
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 13 FIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAHPVNP 72
+ E++ E L++K+++++ +D F +T + +F H NP
Sbjct: 103 LVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNP 162
Query: 73 PYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+ LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 163 VPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSC-KDTPGFIVNRL 210
>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M75|B Chain B, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 70/170 (41%), Gaps = 4/170 (2%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEE 178
GL+G A + A+ G+ V L D + + +K I+ +L+ +K + G E+
Sbjct: 24 GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEK 83
Query: 179 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXX 238
I+ + + + E++ E L++K+++++ +D F
Sbjct: 84 TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS 143
Query: 239 XXEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+T + +F H NP + LVE++ TS++ + +G
Sbjct: 144 IANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG 193
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 13 FIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAHPVNP 72
+ E++ E L++K+++++ +D F +T + +F H NP
Sbjct: 103 LVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNP 162
Query: 73 PYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+ LVE++ TS++ + +G PV+ + GF ++R+
Sbjct: 163 VPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSC-KDTPGFIVSRL 210
>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2
Length = 725
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 2/165 (1%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GL+G A + Y V L +V + +E ++ LQ +KG + E+ L
Sbjct: 321 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQE-KFEKTMSL 379
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
+ G+ + E D + E+V E + +K Q++ ++ + E
Sbjct: 380 LKGS-LDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGER 438
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEI 287
+ + + + AH +P + +PL+EIV TS +VI ++ +I
Sbjct: 439 TKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKI 483
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 2/139 (1%)
Query: 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFI 65
E D + E+V E + +K Q++ ++ + E + + + +
Sbjct: 387 ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIV 446
Query: 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLI 125
AH +P + +PL+EIV TS +VI ++ +I PV + GFA+NR+
Sbjct: 447 GAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGN-CTGFAVNRMFFPY 505
Query: 126 GQAWAMIFASAGYKVSLYD 144
QA AM G L D
Sbjct: 506 TQA-AMFLVECGADPYLID 523
>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M76|B Chain B, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 70/170 (41%), Gaps = 4/170 (2%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEE 178
GL+G A + A+ G+ V L D + + +K I+ +L+ +K + G E+
Sbjct: 24 GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEK 83
Query: 179 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXX 238
I+ + + + E++ E L++K+++++ +D F
Sbjct: 84 TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTCSLQITS 143
Query: 239 XXEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+T + +F H NP + LVE++ TS++ + +G
Sbjct: 144 IANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG 193
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 13 FIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAHPVNP 72
+ E++ E L++K+++++ +D F +T + +F H NP
Sbjct: 103 LVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTCSLQITSIANATTRQDRFAGLHFFNP 162
Query: 73 PYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+ LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 163 VPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSC-KDTPGFIVNRL 210
>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSJ|B Chain B, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/170 (18%), Positives = 70/170 (41%), Gaps = 4/170 (2%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEE 178
GL+G A + A+ G+ V L D + + +K I+ +L+ +K + G E+
Sbjct: 24 GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEK 83
Query: 179 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXX 238
I+ + + + E++ + L++K+++++ +D F
Sbjct: 84 TLSTIATSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFASNTSSLQITS 143
Query: 239 XXEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+T + +F H NP + LVE++ TS++ + +G
Sbjct: 144 IANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG 193
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 13 FIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAHPVNP 72
+ E++ + L++K+++++ +D F +T + +F H NP
Sbjct: 103 LVVEAIVQNLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNP 162
Query: 73 PYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+ LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 163 VPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSC-KDTPGFIVNRL 210
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/170 (18%), Positives = 70/170 (41%), Gaps = 4/170 (2%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEE 178
GL+G A + A+ G+ V L D + + +K I+ +L+ +K + G E+
Sbjct: 24 GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEK 83
Query: 179 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXX 238
I+ + + + E++ E L++K+++++ +D F
Sbjct: 84 TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS 143
Query: 239 XXEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+T + +F H NP + LV+++ TS++ + +G
Sbjct: 144 IANATTRQDRFAGLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALG 193
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 13 FIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAHPVNP 72
+ E++ E L++K+++++ +D F +T + +F H NP
Sbjct: 103 LVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNP 162
Query: 73 PYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+ LV+++ TS++ + +G PV+ + GF +NR+
Sbjct: 163 VPVMKLVQVIKTPMTSQKTFESLVDFSKALGKHPVSC-KDTPGFIVNRL 210
>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase
(Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At
2.00 A Resolution
Length = 293
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 67/166 (40%), Gaps = 22/166 (13%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GL G+ A+ AS ++V L DV + +E A+ I PEE
Sbjct: 21 GLXGRGIAIAIASK-HEVVLQDVSEKALEAAREQI------------------PEELLSK 61
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
I T L E ++D + E+V E L K +V R ++ E
Sbjct: 62 IEFTTTL-EKVKDCDIVXEAVFEDLNTKVEVLREVE--RLTNAPLCSNTSVISVDDIAER 118
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
S+F+ H NPP+ PLVEIV + +T + + + E+G
Sbjct: 119 LDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELG 164
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFI 65
E ++D + E+V E L K +V R ++ E S+F+
Sbjct: 69 EKVKDCDIVXEAVFEDLNTKVEVLREVE--RLTNAPLCSNTSVISVDDIAERLDSPSRFL 126
Query: 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107
H NPP+ PLVEIV + +T + + + E+G + V
Sbjct: 127 GVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVV 168
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/170 (18%), Positives = 69/170 (40%), Gaps = 4/170 (2%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEE 178
GL+G A + A+ G+ V L D + + +K I+ +L+ +K + G E+
Sbjct: 24 GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEK 83
Query: 179 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXX 238
I+ + + + E++ E L++K+++++ +D
Sbjct: 84 TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITS 143
Query: 239 XXEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+T + +F H NP + LVE++ TS++ + +G
Sbjct: 144 IANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG 193
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 13 FIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAHPVNP 72
+ E++ E L++K+++++ +D +T + +F H NP
Sbjct: 103 LVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNP 162
Query: 73 PYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+ LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 163 VPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSC-KDTPGFIVNRL 210
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 6/167 (3%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G +G+ A+ FA G V + +Q++ AK I TL+ + G S + +
Sbjct: 325 GTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF 384
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
S T + L + E+V E + +K +V+ + +
Sbjct: 385 SSST----KELSTVDLVVEAVFEDMNLKKKVFAELSA-LCKPGAFLCTNTSALNVDDIAS 439
Query: 243 STHRSQFIVA-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
ST R Q ++ H +P + + L+E++P+ ++S I + +IG
Sbjct: 440 STDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIG 486
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 58 STHRSQFIVA-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF 116
ST R Q ++ H +P + + L+E++P+ ++S I + +IG K + GF
Sbjct: 440 STDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIG-KIGVVVGNCYGF 498
Query: 117 ALNRI 121
NR+
Sbjct: 499 VGNRM 503
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 6/167 (3%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G +G+ A+ FA G V + +Q++ AK I TL+ + G S + +
Sbjct: 310 GTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF 369
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
S T + L + E+V E + +K +V+ + +
Sbjct: 370 SSST----KELSTVDLVVEAVFEDMNLKKKVFAELSA-LCKPGAFLCTNTSALNVDDIAS 424
Query: 243 STHRSQFIVA-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
ST R Q ++ H +P + + L+E++P+ ++S I + +IG
Sbjct: 425 STDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIG 471
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 58 STHRSQFIVA-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF 116
ST R Q ++ H +P + + L+E++P+ ++S I + +IG K + GF
Sbjct: 425 STDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIG-KIGVVVGNCYGF 483
Query: 117 ALNRI 121
NR+
Sbjct: 484 VGNRM 488
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 6/167 (3%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G +G+ A+ FA G V + +Q++ AK I TL+ + G S + +
Sbjct: 325 GTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF 384
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
S T + L + E+V E + +K +V+ + +
Sbjct: 385 SSST----KELSTVDLVVEAVFEDMNLKKKVFAELSA-LCKPGAFLCTNTSALNVDDIAS 439
Query: 243 STHRSQFIVA-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
ST R Q ++ H +P + + L+E++P+ ++S I + +IG
Sbjct: 440 STDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIG 486
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 58 STHRSQFIVA-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF 116
ST R Q ++ H +P + + L+E++P+ ++S I + +IG K + GF
Sbjct: 440 STDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIG-KIGVVVGNCYGF 498
Query: 117 ALNRI 121
NR+
Sbjct: 499 VGNRM 503
>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
pdb|3RQS|B Chain B, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
Length = 324
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 13 FIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAHPVNP 72
+ E++ E L++K+++++ +D F +T + +F H NP
Sbjct: 125 LVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNP 184
Query: 73 PYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 185 VPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSC-KDTPGFIVNRL 232
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/161 (18%), Positives = 64/161 (39%), Gaps = 4/161 (2%)
Query: 132 IFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEEQFGLISGTP 187
+ A+ G+ V L D + + +K I+ +L+ +K + G E+ I+ +
Sbjct: 55 VAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST 114
Query: 188 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRS 247
+ + E++ E L++K+++++ +D F +T +
Sbjct: 115 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQD 174
Query: 248 QFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+F H NP LVE++ TS++ + +G
Sbjct: 175 RFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALG 215
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 6/167 (3%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G +G+ A+ FA G V + +Q++ AK I TL+ + G S + +
Sbjct: 46 GTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF 105
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
S T + L + E+V E + +K +V+ + +
Sbjct: 106 SSST----KELSTVDLVVEAVFEDMNLKKKVFAELSA-LCKPGAFLCTNTSALNVDDIAS 160
Query: 243 STHRSQFIVA-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
ST R Q ++ H +P + + L+E++P+ ++S I + +IG
Sbjct: 161 STDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIG 207
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 58 STHRSQFIVA-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF 116
ST R Q ++ H +P + + L+E++P+ ++S I + +IG K + GF
Sbjct: 161 STDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIG-KIGVVVGNCYGF 219
Query: 117 ALNRI 121
NR+
Sbjct: 220 VGNRM 224
>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 715
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 63 QFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
F+ H NP + +PLVE++ +S+ + T ++G P+ + + GF +NR+
Sbjct: 446 NFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPI-VVNDCPGFLVNRV 503
>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 293
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 13 FIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAHPVNP 72
+ E++ E L++K+++++ +D +T + +F H NP
Sbjct: 92 LVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNP 151
Query: 73 PYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 152 VPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSC-KDTPGFIVNRL 199
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 4/161 (2%)
Query: 132 IFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE----QFGLISGTP 187
+ A+ G+ V L D + + +K I+ +L+ +K + + +E I+ +
Sbjct: 22 VAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVAKTLSTIATST 81
Query: 188 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRS 247
+ + E++ E L++K+++++ +D +T +
Sbjct: 82 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTRQD 141
Query: 248 QFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+F H NP LVE++ TS++ + +G
Sbjct: 142 RFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALG 182
>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|B Chain B, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|C Chain C, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
Length = 483
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 2/168 (1%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G +G A + AS G++V LYD+ +E + A + I L +G L L
Sbjct: 14 GTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRL 73
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
I T + L A + E+ E L++K ++ +
Sbjct: 74 IPVTDI--HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAE 131
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
+ + H NP + LVE+V T+ V+ + E+ G +
Sbjct: 132 IKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQ 179
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 68 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H NP + LVE+V T+ V+ + E+ G +PV + GF +NR+
Sbjct: 142 HFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHS-TPGFIVNRV 194
>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of
Multifuctional Enzyme 1 From C.Elegans
Length = 460
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 62 SQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNR- 120
S + H NP I LVEI+ + TS + I + I PV L + F NR
Sbjct: 182 SNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPV-LVGNCKSFVFNRL 240
Query: 121 IHGLIGQAWAMIF 133
+H Q+ +++
Sbjct: 241 LHVYFDQSQKLMY 253
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 84 AAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIH-GLIGQAWAMIFASAGYKVSL 142
A W + + TR E + + IRG L I G +GQA A+ + G+ V
Sbjct: 137 ATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLF 196
Query: 143 YD-VLSEQIENAKNTIQ-HTLQD 163
YD LS+ +E A + TLQD
Sbjct: 197 YDPYLSDGVERALGLQRVSTLQD 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,381,476
Number of Sequences: 62578
Number of extensions: 250738
Number of successful extensions: 1164
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1128
Number of HSP's gapped (non-prelim): 49
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)