Query psy17416
Match_columns 290
No_of_seqs 245 out of 2175
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 21:54:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08268 3-hydroxy-acyl-CoA de 100.0 8E-44 1.7E-48 342.2 24.1 280 2-290 79-407 (507)
2 COG1250 FadB 3-hydroxyacyl-CoA 100.0 2E-43 4.4E-48 315.6 15.2 146 1-155 74-219 (307)
3 KOG2304|consensus 100.0 1E-41 2.2E-46 285.2 7.4 147 1-155 87-233 (298)
4 PRK07066 3-hydroxybutyryl-CoA 100.0 1E-40 2.3E-45 302.6 14.4 148 1-155 74-221 (321)
5 PF02737 3HCDH_N: 3-hydroxyacy 100.0 4.5E-39 9.7E-44 270.6 16.8 167 122-290 7-173 (180)
6 COG1250 FadB 3-hydroxyacyl-CoA 100.0 1.3E-38 2.9E-43 284.7 18.9 167 122-290 11-177 (307)
7 TIGR02437 FadB fatty oxidation 100.0 3E-38 6.4E-43 314.4 14.6 145 1-155 384-528 (714)
8 TIGR02441 fa_ox_alpha_mit fatt 100.0 5.3E-38 1.1E-42 313.3 13.8 145 1-155 406-550 (737)
9 PRK11730 fadB multifunctional 100.0 1.3E-37 2.9E-42 310.2 14.5 145 1-155 384-528 (715)
10 TIGR02440 FadJ fatty oxidation 100.0 4.6E-37 9.9E-42 305.7 14.2 145 1-155 376-520 (699)
11 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 1.6E-36 3.6E-41 291.0 16.7 146 1-155 76-221 (503)
12 PRK07066 3-hydroxybutyryl-CoA 100.0 1E-35 2.3E-40 270.0 20.3 168 115-290 11-178 (321)
13 PRK11154 fadJ multifunctional 100.0 7.9E-37 1.7E-41 304.6 13.8 145 1-155 381-525 (708)
14 PF02737 3HCDH_N: 3-hydroxyacy 100.0 2.7E-36 5.8E-41 253.7 11.6 111 1-113 70-180 (180)
15 PRK08269 3-hydroxybutyryl-CoA 100.0 3.9E-35 8.4E-40 266.7 15.9 145 3-155 72-216 (314)
16 PRK07819 3-hydroxybutyryl-CoA 100.0 7.1E-35 1.5E-39 262.2 14.5 146 1-155 76-223 (286)
17 TIGR02437 FadB fatty oxidation 100.0 4.6E-34 9.9E-39 284.4 21.3 167 122-290 321-487 (714)
18 PRK11730 fadB multifunctional 100.0 1.2E-33 2.6E-38 281.9 21.7 167 122-290 321-487 (715)
19 KOG2304|consensus 100.0 3.5E-35 7.6E-40 246.0 8.7 169 122-290 19-191 (298)
20 TIGR02441 fa_ox_alpha_mit fatt 100.0 8.6E-34 1.9E-38 283.1 18.4 217 70-290 271-509 (737)
21 PRK07819 3-hydroxybutyryl-CoA 100.0 4.4E-33 9.5E-38 250.6 19.9 171 115-290 9-181 (286)
22 PRK08269 3-hydroxybutyryl-CoA 100.0 7E-33 1.5E-37 251.9 18.9 165 125-290 1-174 (314)
23 TIGR02440 FadJ fatty oxidation 100.0 3.5E-33 7.6E-38 277.9 18.4 167 122-290 312-479 (699)
24 PRK11154 fadJ multifunctional 100.0 7.7E-33 1.7E-37 276.0 20.1 167 122-290 317-484 (708)
25 PRK08293 3-hydroxybutyryl-CoA 100.0 1.1E-32 2.3E-37 248.5 15.0 148 1-155 75-222 (287)
26 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 1.9E-31 4.1E-36 256.0 19.5 172 114-290 8-179 (503)
27 PRK08268 3-hydroxy-acyl-CoA de 100.0 5E-31 1.1E-35 253.7 19.7 172 114-290 10-181 (507)
28 KOG2305|consensus 100.0 5.2E-31 1.1E-35 221.1 13.3 168 122-289 11-178 (313)
29 PRK08293 3-hydroxybutyryl-CoA 100.0 1.4E-29 3.1E-34 228.2 20.1 169 122-290 11-179 (287)
30 PRK06035 3-hydroxyacyl-CoA deh 100.0 2.8E-30 6.1E-35 233.2 15.4 145 2-155 78-222 (291)
31 PRK05808 3-hydroxybutyryl-CoA 100.0 5.4E-30 1.2E-34 230.4 14.1 145 2-155 75-219 (282)
32 PRK09260 3-hydroxybutyryl-CoA 100.0 6.6E-30 1.4E-34 230.5 14.4 147 1-155 72-218 (288)
33 KOG1683|consensus 100.0 9.3E-30 2E-34 227.6 6.6 142 7-156 66-207 (380)
34 PRK09260 3-hydroxybutyryl-CoA 100.0 8.7E-28 1.9E-32 216.7 19.6 168 122-290 9-176 (288)
35 PRK07530 3-hydroxybutyryl-CoA 100.0 1.6E-28 3.4E-33 221.9 14.5 145 2-155 76-220 (292)
36 PRK05808 3-hydroxybutyryl-CoA 100.0 9E-28 2E-32 215.9 19.1 167 122-290 11-177 (282)
37 PRK06035 3-hydroxyacyl-CoA deh 100.0 2E-27 4.2E-32 214.7 19.5 167 122-290 11-180 (291)
38 PRK07530 3-hydroxybutyryl-CoA 100.0 2.4E-27 5.2E-32 214.2 19.6 171 115-290 8-178 (292)
39 PLN02545 3-hydroxybutyryl-CoA 100.0 5E-27 1.1E-31 212.4 19.7 172 114-290 7-178 (295)
40 PLN02545 3-hydroxybutyryl-CoA 100.0 1.3E-27 2.8E-32 216.2 14.3 145 2-155 76-220 (295)
41 KOG2305|consensus 99.9 7.9E-28 1.7E-32 202.0 7.5 143 1-143 75-217 (313)
42 PRK07531 bifunctional 3-hydrox 99.9 8.2E-27 1.8E-31 224.6 14.7 148 1-155 71-218 (495)
43 PRK06129 3-hydroxyacyl-CoA deh 99.9 8.9E-26 1.9E-30 205.4 19.9 172 115-290 6-177 (308)
44 PRK06129 3-hydroxyacyl-CoA deh 99.9 6.3E-26 1.4E-30 206.4 14.4 148 1-155 73-220 (308)
45 PRK07531 bifunctional 3-hydrox 99.9 1E-24 2.2E-29 210.0 19.1 169 114-290 7-175 (495)
46 PRK06130 3-hydroxybutyryl-CoA 99.9 3.6E-24 7.7E-29 195.1 14.9 147 2-155 71-217 (311)
47 PRK06130 3-hydroxybutyryl-CoA 99.9 2.6E-22 5.6E-27 182.9 19.3 167 115-290 8-174 (311)
48 KOG1683|consensus 99.9 3E-23 6.5E-28 185.9 6.0 163 125-289 1-163 (380)
49 PRK07417 arogenate dehydrogena 99.5 1.8E-13 4E-18 122.9 15.1 146 115-290 4-161 (279)
50 PRK11199 tyrA bifunctional cho 99.4 4.2E-12 9E-17 118.6 11.5 126 122-290 107-236 (374)
51 PRK06545 prephenate dehydrogen 99.4 1.4E-11 3.1E-16 114.4 14.9 149 115-290 4-168 (359)
52 COG0287 TyrA Prephenate dehydr 99.3 3.6E-11 7.9E-16 107.5 15.4 143 122-289 11-164 (279)
53 PF02153 PDH: Prephenate dehyd 99.3 3.8E-11 8.2E-16 106.7 13.7 135 129-289 1-151 (258)
54 cd05297 GH4_alpha_glucosidase_ 99.2 8E-13 1.7E-17 125.2 -0.4 153 122-289 8-183 (423)
55 PRK07502 cyclohexadienyl dehyd 99.2 3.9E-10 8.4E-15 102.7 16.6 148 114-290 9-173 (307)
56 PLN02688 pyrroline-5-carboxyla 99.2 3.2E-10 7E-15 101.0 15.3 144 115-289 4-153 (266)
57 PRK11880 pyrroline-5-carboxyla 99.2 6.8E-10 1.5E-14 98.9 16.1 144 115-289 6-153 (267)
58 PRK08655 prephenate dehydrogen 99.2 4.6E-10 1E-14 106.9 15.7 142 122-289 9-156 (437)
59 TIGR01505 tartro_sem_red 2-hyd 99.2 2.9E-10 6.2E-15 102.7 13.4 141 115-290 3-155 (291)
60 cd05297 GH4_alpha_glucosidase_ 99.2 5.7E-13 1.2E-17 126.3 -4.5 104 1-106 65-185 (423)
61 COG2084 MmsB 3-hydroxyisobutyr 99.2 2E-10 4.3E-15 102.5 11.8 141 114-290 3-157 (286)
62 PLN02712 arogenate dehydrogena 99.1 9E-09 2E-13 102.6 22.5 139 123-289 378-530 (667)
63 PF03446 NAD_binding_2: NAD bi 99.1 9.3E-11 2E-15 97.0 7.0 139 114-289 4-155 (163)
64 PRK08507 prephenate dehydrogen 99.1 3.1E-09 6.7E-14 95.3 16.2 142 115-289 4-161 (275)
65 PRK12557 H(2)-dependent methyl 99.1 1.2E-09 2.6E-14 100.7 13.7 143 126-290 32-188 (342)
66 PRK11559 garR tartronate semia 99.1 9.4E-10 2E-14 99.6 12.9 142 114-290 5-158 (296)
67 PLN02256 arogenate dehydrogena 99.1 5.6E-09 1.2E-13 94.8 15.7 145 114-289 39-197 (304)
68 PRK08818 prephenate dehydrogen 99.0 7E-09 1.5E-13 96.3 14.6 132 115-289 8-148 (370)
69 PRK07679 pyrroline-5-carboxyla 99.0 8.9E-09 1.9E-13 92.5 14.5 147 114-289 6-158 (279)
70 PRK14806 bifunctional cyclohex 99.0 1.6E-08 3.4E-13 102.6 16.4 147 114-289 6-170 (735)
71 PRK15461 NADH-dependent gamma- 99.0 1.1E-08 2.4E-13 92.7 13.6 145 114-290 4-157 (296)
72 COG0240 GpsA Glycerol-3-phosph 99.0 1.4E-09 3.1E-14 98.1 7.2 102 122-236 9-110 (329)
73 PF01210 NAD_Gly3P_dh_N: NAD-d 99.0 3.2E-09 7E-14 87.3 8.7 100 122-234 7-106 (157)
74 PRK11199 tyrA bifunctional cho 98.9 5.1E-09 1.1E-13 97.9 8.9 109 3-116 135-247 (374)
75 TIGR01692 HIBADH 3-hydroxyisob 98.9 1.5E-08 3.2E-13 91.5 11.6 136 122-290 4-152 (288)
76 KOG0409|consensus 98.9 2.7E-08 5.8E-13 88.1 11.2 144 112-290 36-192 (327)
77 PLN02350 phosphogluconate dehy 98.8 3.6E-08 7.8E-13 94.8 11.0 150 114-289 9-167 (493)
78 PRK12491 pyrroline-5-carboxyla 98.8 2.6E-07 5.6E-12 82.7 15.2 147 114-289 5-156 (272)
79 PRK15059 tartronate semialdehy 98.7 9.7E-08 2.1E-12 86.4 10.7 143 114-290 3-155 (292)
80 TIGR00872 gnd_rel 6-phosphoglu 98.7 4.4E-07 9.5E-12 82.4 14.4 145 115-289 4-153 (298)
81 PTZ00142 6-phosphogluconate de 98.7 1E-07 2.3E-12 91.3 10.7 145 114-289 4-161 (470)
82 PRK12490 6-phosphogluconate de 98.7 2.4E-07 5.1E-12 84.1 12.2 140 114-289 3-154 (299)
83 TIGR01505 tartro_sem_red 2-hyd 98.7 9.5E-08 2.1E-12 86.3 8.8 140 2-155 47-205 (291)
84 cd01339 LDH-like_MDH L-lactate 98.6 9.3E-08 2E-12 86.8 8.5 118 122-253 6-140 (300)
85 TIGR00873 gnd 6-phosphoglucona 98.6 1.9E-07 4E-12 89.6 10.9 147 115-289 3-158 (467)
86 TIGR01724 hmd_rel H2-forming N 98.6 4.7E-07 1E-11 81.5 12.7 143 125-290 31-188 (341)
87 PRK00094 gpsA NAD(P)H-dependen 98.6 6.5E-07 1.4E-11 81.8 13.7 153 115-288 5-171 (325)
88 PLN02712 arogenate dehydrogena 98.6 9.5E-07 2.1E-11 88.3 15.6 144 114-289 55-213 (667)
89 PLN02858 fructose-bisphosphate 98.6 3.3E-07 7.1E-12 98.0 12.7 141 114-290 7-162 (1378)
90 PRK07680 late competence prote 98.6 1.4E-06 3.1E-11 77.9 14.8 145 115-289 4-153 (273)
91 PRK09599 6-phosphogluconate de 98.6 8.1E-07 1.8E-11 80.7 12.9 139 115-289 4-154 (301)
92 PRK07417 arogenate dehydrogena 98.6 2.7E-07 5.8E-12 82.9 9.1 102 6-110 53-166 (279)
93 PTZ00082 L-lactate dehydrogena 98.6 1.7E-07 3.7E-12 85.8 7.9 118 122-253 14-153 (321)
94 PRK15057 UDP-glucose 6-dehydro 98.5 1.9E-07 4E-12 87.7 7.7 94 122-228 8-114 (388)
95 TIGR03026 NDP-sugDHase nucleot 98.5 2.7E-06 6E-11 80.6 15.0 156 115-288 4-191 (411)
96 PRK06928 pyrroline-5-carboxyla 98.5 4.5E-06 9.7E-11 75.0 14.4 146 115-289 5-156 (277)
97 PTZ00117 malate dehydrogenase; 98.5 6.5E-07 1.4E-11 82.0 8.9 118 122-253 13-147 (319)
98 TIGR03376 glycerol3P_DH glycer 98.4 8.5E-07 1.8E-11 81.8 9.1 103 122-237 7-122 (342)
99 PRK14618 NAD(P)H-dependent gly 98.4 1.2E-06 2.5E-11 80.6 9.9 152 115-289 8-171 (328)
100 PRK09287 6-phosphogluconate de 98.4 1E-06 2.2E-11 84.2 9.4 140 125-289 1-149 (459)
101 PRK05479 ketol-acid reductoiso 98.4 9.1E-06 2E-10 74.4 15.1 144 114-289 20-174 (330)
102 PRK11559 garR tartronate semia 98.4 1.4E-06 3E-11 78.9 9.6 140 2-155 50-208 (296)
103 PRK07634 pyrroline-5-carboxyla 98.4 6.9E-06 1.5E-10 72.1 13.8 146 114-289 7-158 (245)
104 PRK06476 pyrroline-5-carboxyla 98.4 7.9E-06 1.7E-10 72.5 14.0 139 115-290 4-146 (258)
105 PTZ00345 glycerol-3-phosphate 98.4 9.9E-07 2.1E-11 82.0 8.3 106 122-236 19-134 (365)
106 PLN02858 fructose-bisphosphate 98.4 2.2E-06 4.9E-11 91.7 11.8 143 114-290 327-482 (1378)
107 PRK12557 H(2)-dependent methyl 98.3 3.4E-06 7.4E-11 77.8 10.4 106 2-109 73-192 (342)
108 PRK12480 D-lactate dehydrogena 98.3 1.6E-05 3.5E-10 73.1 14.3 93 122-243 154-248 (330)
109 PRK06223 malate dehydrogenase; 98.3 3.2E-06 7E-11 76.9 9.2 118 122-253 10-144 (307)
110 PRK14619 NAD(P)H-dependent gly 98.3 1.5E-06 3.2E-11 79.3 6.7 79 115-236 8-87 (308)
111 cd00650 LDH_MDH_like NAD-depen 98.3 3.1E-06 6.7E-11 75.4 8.1 117 123-253 8-144 (263)
112 PLN02688 pyrroline-5-carboxyla 98.3 2.9E-05 6.2E-10 69.1 14.3 104 2-109 53-157 (266)
113 PRK06545 prephenate dehydrogen 98.3 3.3E-06 7.3E-11 78.6 8.4 117 2-120 52-183 (359)
114 PTZ00431 pyrroline carboxylate 98.2 2.8E-05 6.1E-10 69.1 13.9 137 114-289 6-149 (260)
115 PRK11064 wecC UDP-N-acetyl-D-m 98.2 3E-05 6.4E-10 73.6 14.7 95 115-228 7-116 (415)
116 PRK08229 2-dehydropantoate 2-r 98.2 2.3E-05 5E-10 72.3 13.3 150 122-289 10-170 (341)
117 TIGR00465 ilvC ketol-acid redu 98.2 0.00011 2.3E-09 67.2 16.2 146 114-290 6-161 (314)
118 PRK12439 NAD(P)H-dependent gly 98.2 2.9E-05 6.3E-10 71.8 12.4 101 122-236 15-116 (341)
119 PTZ00082 L-lactate dehydrogena 98.2 1.8E-06 3.9E-11 79.1 4.2 88 1-107 66-174 (321)
120 TIGR01915 npdG NADPH-dependent 98.1 0.00016 3.4E-09 62.7 15.9 148 122-289 9-182 (219)
121 PF10727 Rossmann-like: Rossma 98.1 7.5E-06 1.6E-10 64.7 6.1 113 113-254 12-127 (127)
122 COG0345 ProC Pyrroline-5-carbo 98.1 0.00015 3.3E-09 64.4 14.6 145 114-289 4-153 (266)
123 PTZ00117 malate dehydrogenase; 98.0 5.3E-06 1.1E-10 76.0 5.1 90 1-109 65-170 (319)
124 cd01339 LDH-like_MDH L-lactate 98.0 3.6E-06 7.8E-11 76.4 3.4 89 2-109 59-163 (300)
125 PLN03139 formate dehydrogenase 97.9 0.0008 1.7E-08 63.1 17.7 140 113-280 201-352 (386)
126 PF03721 UDPG_MGDP_dh_N: UDP-g 97.9 6.8E-05 1.5E-09 63.3 9.6 95 122-228 8-117 (185)
127 TIGR00112 proC pyrroline-5-car 97.9 0.0002 4.4E-09 63.1 13.0 127 137-289 9-136 (245)
128 PF03807 F420_oxidored: NADP o 97.9 6.3E-05 1.4E-09 56.1 8.4 87 115-231 3-94 (96)
129 TIGR02853 spore_dpaA dipicolin 97.9 0.00041 8.8E-09 62.7 14.5 177 3-228 47-237 (287)
130 PRK11880 pyrroline-5-carboxyla 97.9 0.00011 2.3E-09 65.4 10.7 103 2-109 54-157 (267)
131 PRK14620 NAD(P)H-dependent gly 97.9 6.9E-05 1.5E-09 68.8 9.6 101 122-235 8-110 (326)
132 PLN02353 probable UDP-glucose 97.9 0.00028 6E-09 68.0 14.0 150 122-287 9-198 (473)
133 PRK08655 prephenate dehydrogen 97.9 7.1E-05 1.5E-09 71.5 9.9 109 2-112 50-164 (437)
134 PRK07574 formate dehydrogenase 97.9 0.0007 1.5E-08 63.5 16.2 134 122-280 200-345 (385)
135 PRK06444 prephenate dehydrogen 97.8 0.00045 9.7E-09 58.8 12.1 99 122-285 9-112 (197)
136 PRK07502 cyclohexadienyl dehyd 97.8 0.00019 4.2E-09 65.3 10.6 109 2-113 58-181 (307)
137 COG4007 Predicted dehydrogenas 97.8 0.00023 5E-09 62.0 10.1 140 126-290 33-189 (340)
138 PRK11861 bifunctional prephena 97.7 0.00018 3.9E-09 72.5 9.0 89 199-289 1-104 (673)
139 PRK13243 glyoxylate reductase; 97.6 0.0022 4.7E-08 59.2 15.0 123 122-271 158-290 (333)
140 PRK06522 2-dehydropantoate 2-r 97.6 0.0016 3.5E-08 58.7 13.9 105 122-243 8-113 (304)
141 TIGR01763 MalateDH_bact malate 97.6 0.00025 5.4E-09 64.6 8.5 93 122-228 9-116 (305)
142 PRK08605 D-lactate dehydrogena 97.6 0.00082 1.8E-08 62.0 11.6 93 114-237 149-242 (332)
143 COG1004 Ugd Predicted UDP-gluc 97.6 0.0014 3E-08 60.8 12.9 105 122-236 8-124 (414)
144 PRK15182 Vi polysaccharide bio 97.6 0.0022 4.9E-08 61.0 14.9 97 115-228 10-117 (425)
145 COG0677 WecC UDP-N-acetyl-D-ma 97.6 0.0015 3.3E-08 60.5 13.1 94 122-229 17-126 (436)
146 PRK12921 2-dehydropantoate 2-r 97.6 0.0013 2.8E-08 59.6 12.7 107 122-243 8-115 (305)
147 COG2085 Predicted dinucleotide 97.6 0.0022 4.8E-08 54.7 13.0 139 122-289 9-173 (211)
148 PRK06436 glycerate dehydrogena 97.4 0.0013 2.9E-08 59.7 10.4 137 113-282 124-270 (303)
149 PRK08410 2-hydroxyacid dehydro 97.4 0.0029 6.4E-08 57.8 12.7 130 122-282 153-297 (311)
150 PRK14806 bifunctional cyclohex 97.4 0.00069 1.5E-08 69.0 9.3 109 2-112 55-178 (735)
151 PLN02256 arogenate dehydrogena 97.4 0.0013 2.9E-08 59.8 10.0 109 2-112 83-205 (304)
152 PRK13403 ketol-acid reductoiso 97.4 0.0045 9.8E-08 56.4 13.1 140 114-289 19-172 (335)
153 PRK15469 ghrA bifunctional gly 97.3 0.0019 4.2E-08 59.0 10.5 127 114-270 139-276 (312)
154 cd00650 LDH_MDH_like NAD-depen 97.3 0.00019 4.1E-09 63.9 3.7 85 1-107 61-164 (263)
155 TIGR02354 thiF_fam2 thiamine b 97.3 0.0029 6.3E-08 54.0 10.3 102 122-228 29-142 (200)
156 PRK08306 dipicolinate synthase 97.3 0.011 2.4E-07 53.7 14.4 79 122-228 160-238 (296)
157 PRK13581 D-3-phosphoglycerate 97.3 0.01 2.2E-07 58.1 15.2 123 122-271 148-280 (526)
158 PRK06223 malate dehydrogenase; 97.2 0.00029 6.4E-09 64.1 4.0 88 2-108 63-166 (307)
159 COG1023 Gnd Predicted 6-phosph 97.2 0.0099 2.2E-07 51.7 12.1 136 122-287 8-152 (300)
160 PF00670 AdoHcyase_NAD: S-aden 97.1 0.0046 1E-07 50.8 9.5 91 122-242 31-124 (162)
161 PF07991 IlvN: Acetohydroxy ac 97.1 0.0027 5.9E-08 52.0 7.8 135 122-289 12-161 (165)
162 TIGR01327 PGDH D-3-phosphoglyc 97.1 0.0059 1.3E-07 59.8 11.4 124 122-271 146-279 (525)
163 PRK06487 glycerate dehydrogena 97.0 0.012 2.6E-07 53.9 12.3 129 122-282 156-298 (317)
164 PRK06249 2-dehydropantoate 2-r 97.0 0.021 4.6E-07 52.1 13.5 113 122-251 13-126 (313)
165 PLN02928 oxidoreductase family 96.9 0.009 2E-07 55.4 10.7 153 113-282 161-325 (347)
166 PRK07679 pyrroline-5-carboxyla 96.9 0.014 3E-07 52.4 11.4 105 2-109 57-162 (279)
167 PF02826 2-Hacid_dh_C: D-isome 96.8 0.0019 4.1E-08 54.1 5.1 109 107-244 32-142 (178)
168 TIGR00745 apbA_panE 2-dehydrop 96.8 0.0087 1.9E-07 53.6 9.2 104 125-243 2-106 (293)
169 PRK15076 alpha-galactosidase; 96.7 0.0071 1.5E-07 57.7 8.7 57 136-205 29-85 (431)
170 PRK08507 prephenate dehydrogen 96.7 0.012 2.6E-07 52.6 9.7 103 3-111 52-168 (275)
171 PRK07634 pyrroline-5-carboxyla 96.7 0.036 7.9E-07 48.4 12.5 104 2-109 58-162 (245)
172 PF02153 PDH: Prephenate dehyd 96.7 0.013 2.9E-07 52.0 9.5 104 5-110 40-157 (258)
173 TIGR01724 hmd_rel H2-forming N 96.7 0.012 2.7E-07 53.4 9.1 113 2-116 73-199 (341)
174 cd01065 NAD_bind_Shikimate_DH 96.6 0.0042 9.2E-08 50.2 5.6 111 122-254 27-140 (155)
175 KOG2711|consensus 96.6 0.0052 1.1E-07 55.8 6.3 109 122-236 29-144 (372)
176 cd05291 HicDH_like L-2-hydroxy 96.5 0.013 2.8E-07 53.4 8.4 91 122-227 8-114 (306)
177 PRK11790 D-3-phosphoglycerate 96.5 0.02 4.4E-07 54.3 9.8 121 122-271 159-294 (409)
178 PF02558 ApbA: Ketopantoate re 96.5 0.011 2.3E-07 47.7 7.0 109 122-245 6-116 (151)
179 TIGR00112 proC pyrroline-5-car 96.4 0.16 3.4E-06 44.7 14.4 106 2-110 35-141 (245)
180 PRK00257 erythronate-4-phospha 96.4 0.01 2.2E-07 55.7 7.2 100 111-243 116-221 (381)
181 PF00056 Ldh_1_N: lactate/mala 96.4 0.025 5.5E-07 45.4 8.6 91 123-228 10-116 (141)
182 COG0287 TyrA Prephenate dehydr 96.4 0.038 8.2E-07 49.7 10.6 106 5-112 59-172 (279)
183 PRK14188 bifunctional 5,10-met 96.4 0.074 1.6E-06 48.2 12.4 160 12-229 63-228 (296)
184 PRK15438 erythronate-4-phospha 96.3 0.012 2.5E-07 55.2 7.3 116 92-243 100-221 (378)
185 COG0362 Gnd 6-phosphogluconate 96.3 0.15 3.2E-06 47.6 13.7 142 114-287 6-160 (473)
186 PRK15409 bifunctional glyoxyla 96.2 0.07 1.5E-06 49.0 11.7 121 122-270 153-286 (323)
187 PRK06932 glycerate dehydrogena 96.2 0.042 9.2E-07 50.2 10.2 130 122-282 155-300 (314)
188 cd00300 LDH_like L-lactate deh 96.1 0.032 7E-07 50.7 8.8 92 122-228 6-113 (300)
189 COG0111 SerA Phosphoglycerate 96.0 0.016 3.6E-07 53.1 6.3 121 122-270 150-283 (324)
190 PRK14194 bifunctional 5,10-met 96.0 0.088 1.9E-06 47.7 10.7 161 11-228 63-228 (301)
191 cd05292 LDH_2 A subgroup of L- 95.9 0.025 5.3E-07 51.6 6.9 90 122-228 8-114 (308)
192 TIGR01723 hmd_TIGR 5,10-methen 95.9 0.072 1.6E-06 47.3 9.3 107 181-290 125-235 (340)
193 COG1052 LdhA Lactate dehydroge 95.8 0.14 3E-06 47.0 11.6 83 122-232 154-236 (324)
194 PRK06476 pyrroline-5-carboxyla 95.7 0.38 8.3E-06 42.4 13.6 97 2-108 53-149 (258)
195 PLN02306 hydroxypyruvate reduc 95.6 0.15 3.3E-06 47.9 11.4 137 122-270 173-321 (386)
196 TIGR00936 ahcY adenosylhomocys 95.6 0.098 2.1E-06 49.5 10.0 77 122-229 203-280 (406)
197 cd00401 AdoHcyase S-adenosyl-L 95.6 0.15 3.3E-06 48.4 11.2 77 122-229 210-287 (413)
198 PRK05479 ketol-acid reductoiso 95.6 0.3 6.6E-06 44.9 12.9 103 2-107 65-177 (330)
199 cd05294 LDH-like_MDH_nadp A la 95.5 0.038 8.3E-07 50.4 6.7 115 123-252 10-145 (309)
200 TIGR00518 alaDH alanine dehydr 95.5 0.059 1.3E-06 50.5 8.1 118 92-228 142-264 (370)
201 PRK05225 ketol-acid reductoiso 95.5 0.16 3.5E-06 48.4 10.9 139 122-289 44-199 (487)
202 PRK08818 prephenate dehydrogen 95.5 0.13 2.8E-06 48.2 10.2 106 2-112 43-156 (370)
203 PRK05476 S-adenosyl-L-homocyst 95.5 0.1 2.2E-06 49.6 9.6 79 122-231 220-299 (425)
204 PRK14179 bifunctional 5,10-met 95.5 0.25 5.4E-06 44.5 11.5 162 11-229 62-228 (284)
205 PLN02494 adenosylhomocysteinas 95.4 0.072 1.6E-06 51.1 8.5 91 122-242 262-355 (477)
206 PRK14619 NAD(P)H-dependent gly 95.3 0.049 1.1E-06 49.6 6.8 103 2-113 39-156 (308)
207 PRK00961 H(2)-dependent methyl 95.3 0.094 2E-06 46.5 8.1 107 181-290 127-237 (342)
208 PRK06928 pyrroline-5-carboxyla 95.3 0.16 3.4E-06 45.6 9.9 104 2-109 56-160 (277)
209 COG1893 ApbA Ketopantoate redu 95.2 0.17 3.8E-06 46.1 9.9 117 122-254 8-125 (307)
210 PRK14189 bifunctional 5,10-met 95.2 0.23 5.1E-06 44.6 10.4 162 11-229 62-228 (285)
211 PRK15057 UDP-glucose 6-dehydro 95.1 0.041 8.9E-07 51.8 5.8 49 2-52 65-122 (388)
212 PRK15461 NADH-dependent gamma- 95.1 0.1 2.2E-06 47.3 8.0 105 2-109 49-161 (296)
213 PRK00066 ldh L-lactate dehydro 95.1 0.087 1.9E-06 48.2 7.6 90 122-227 14-119 (315)
214 TIGR02354 thiF_fam2 thiamine b 95.1 0.04 8.7E-07 47.0 5.0 41 3-44 103-143 (200)
215 PRK06141 ornithine cyclodeamin 95.0 0.077 1.7E-06 48.5 7.1 91 114-232 128-220 (314)
216 cd05293 LDH_1 A subgroup of L- 95.0 0.086 1.9E-06 48.2 7.4 92 122-228 11-118 (312)
217 cd05296 GH4_P_beta_glucosidase 94.8 0.094 2E-06 49.9 7.4 101 137-253 29-166 (419)
218 PRK12491 pyrroline-5-carboxyla 94.8 0.27 5.8E-06 44.0 9.8 105 2-109 55-160 (272)
219 PRK07680 late competence prote 94.8 0.23 5.1E-06 44.2 9.4 106 2-112 54-160 (273)
220 PLN00106 malate dehydrogenase 94.7 0.074 1.6E-06 48.8 6.1 115 123-253 28-164 (323)
221 PRK05708 2-dehydropantoate 2-r 94.6 0.21 4.6E-06 45.4 8.9 108 122-244 10-118 (305)
222 TIGR01771 L-LDH-NAD L-lactate 94.6 0.14 2.9E-06 46.6 7.5 91 122-227 4-110 (299)
223 cd05197 GH4_glycoside_hydrolas 94.6 0.13 2.7E-06 49.1 7.5 55 136-203 28-82 (425)
224 TIGR02371 ala_DH_arch alanine 94.5 0.18 3.9E-06 46.3 8.3 90 114-231 131-222 (325)
225 KOG2380|consensus 94.5 1.5 3.2E-05 40.4 13.6 139 122-288 60-212 (480)
226 cd05298 GH4_GlvA_pagL_like Gly 94.3 0.21 4.6E-06 47.8 8.4 103 137-253 29-166 (437)
227 PRK10792 bifunctional 5,10-met 94.2 0.93 2E-05 40.8 11.8 161 11-228 63-228 (285)
228 PTZ00075 Adenosylhomocysteinas 94.2 0.34 7.4E-06 46.7 9.4 82 122-235 262-344 (476)
229 COG2423 Predicted ornithine cy 94.1 0.66 1.4E-05 42.7 10.9 89 114-229 133-223 (330)
230 PRK00961 H(2)-dependent methyl 94.1 0.27 5.8E-06 43.8 7.8 112 2-115 133-247 (342)
231 PTZ00431 pyrroline carboxylate 94.1 0.6 1.3E-05 41.4 10.4 104 2-109 49-153 (260)
232 PRK08229 2-dehydropantoate 2-r 94.0 0.57 1.2E-05 43.0 10.6 107 2-115 66-180 (341)
233 cd01075 NAD_bind_Leu_Phe_Val_D 94.0 0.82 1.8E-05 38.9 10.6 67 84-155 2-69 (200)
234 PRK00094 gpsA NAD(P)H-dependen 93.9 0.17 3.8E-06 45.9 6.7 106 2-115 63-182 (325)
235 PLN02602 lactate dehydrogenase 93.8 0.19 4.1E-06 46.7 6.8 92 122-228 45-152 (350)
236 PF02056 Glyco_hydro_4: Family 93.8 0.1 2.2E-06 43.9 4.5 54 137-203 28-81 (183)
237 PRK13302 putative L-aspartate 93.8 0.44 9.5E-06 42.6 9.0 75 115-217 10-87 (271)
238 PRK08618 ornithine cyclodeamin 93.7 1.3 2.9E-05 40.6 12.3 84 122-230 135-220 (325)
239 cd01487 E1_ThiF_like E1_ThiF_l 93.7 0.58 1.2E-05 38.9 9.0 94 122-220 7-112 (174)
240 PRK13304 L-aspartate dehydroge 93.6 0.67 1.5E-05 41.3 9.9 83 115-227 5-90 (265)
241 PRK14172 bifunctional 5,10-met 93.6 0.87 1.9E-05 40.9 10.3 156 11-228 62-227 (278)
242 PRK14183 bifunctional 5,10-met 93.5 1.3 2.7E-05 39.9 11.3 161 11-228 61-226 (281)
243 PRK14169 bifunctional 5,10-met 93.5 1.3 2.7E-05 39.9 11.3 162 10-228 59-225 (282)
244 COG2084 MmsB 3-hydroxyisobutyr 93.3 0.52 1.1E-05 42.5 8.6 140 2-155 49-207 (286)
245 PRK14166 bifunctional 5,10-met 93.0 1 2.3E-05 40.4 10.0 157 11-228 60-226 (282)
246 PRK14180 bifunctional 5,10-met 93.0 1.5 3.3E-05 39.4 11.0 160 12-229 62-228 (282)
247 TIGR03026 NDP-sugDHase nucleot 93.0 0.56 1.2E-05 44.5 8.8 106 1-109 67-198 (411)
248 TIGR01772 MDH_euk_gproteo mala 92.9 0.17 3.8E-06 46.2 5.0 86 123-228 9-113 (312)
249 cd01078 NAD_bind_H4MPT_DH NADP 92.9 0.66 1.4E-05 39.0 8.3 103 87-207 7-109 (194)
250 TIGR00561 pntA NAD(P) transhyd 92.9 2.8 6E-05 41.0 13.4 34 122-155 172-205 (511)
251 TIGR01692 HIBADH 3-hydroxyisob 92.8 1 2.2E-05 40.5 9.8 100 1-109 43-156 (288)
252 cd05290 LDH_3 A subgroup of L- 92.7 0.53 1.2E-05 42.9 8.0 93 122-228 7-117 (307)
253 COG1004 Ugd Predicted UDP-gluc 92.7 0.14 3E-06 47.9 4.1 142 22-204 213-385 (414)
254 PRK08644 thiamine biosynthesis 92.7 2 4.4E-05 36.9 11.1 103 122-229 36-150 (212)
255 PF13460 NAD_binding_10: NADH( 92.6 0.28 6E-06 40.4 5.5 91 122-232 7-100 (183)
256 PRK04148 hypothetical protein; 92.6 1 2.2E-05 35.8 8.4 86 122-230 25-110 (134)
257 PRK14175 bifunctional 5,10-met 92.5 3.6 7.7E-05 37.2 12.8 163 10-229 61-228 (286)
258 PRK14170 bifunctional 5,10-met 92.4 2.5 5.3E-05 38.1 11.6 157 11-229 61-227 (284)
259 PRK14187 bifunctional 5,10-met 92.3 2 4.4E-05 38.8 11.0 160 11-228 62-229 (294)
260 PRK14171 bifunctional 5,10-met 92.1 2 4.2E-05 38.8 10.5 157 11-228 62-228 (288)
261 PRK14173 bifunctional 5,10-met 91.9 2.4 5.3E-05 38.2 11.0 162 10-228 58-224 (287)
262 PRK14186 bifunctional 5,10-met 91.9 2.6 5.7E-05 38.2 11.2 162 11-229 62-228 (297)
263 PF03059 NAS: Nicotianamine sy 91.9 0.6 1.3E-05 41.9 7.0 92 122-229 129-228 (276)
264 TIGR01757 Malate-DH_plant mala 91.9 1.7 3.6E-05 41.0 10.2 90 123-228 54-167 (387)
265 cd05213 NAD_bind_Glutamyl_tRNA 91.9 0.99 2.1E-05 41.2 8.6 65 122-208 186-251 (311)
266 cd05212 NAD_bind_m-THF_DH_Cycl 91.8 0.9 1.9E-05 36.5 7.3 90 89-229 9-98 (140)
267 TIGR01723 hmd_TIGR 5,10-methen 91.7 1.3 2.7E-05 39.7 8.6 107 2-113 131-243 (340)
268 PRK09424 pntA NAD(P) transhydr 91.6 6.5 0.00014 38.5 14.3 34 122-155 173-206 (509)
269 PRK14191 bifunctional 5,10-met 91.6 2.3 4.9E-05 38.4 10.4 162 10-228 60-226 (285)
270 COG0078 ArgF Ornithine carbamo 91.5 4.3 9.2E-05 36.8 11.9 108 90-222 136-248 (310)
271 PRK07340 ornithine cyclodeamin 91.3 1.3 2.9E-05 40.2 8.9 81 122-229 133-215 (304)
272 PF01488 Shikimate_DH: Shikima 91.3 0.36 7.8E-06 38.3 4.6 67 122-207 20-87 (135)
273 PLN00112 malate dehydrogenase 91.3 1.8 3.8E-05 41.6 9.9 90 123-228 110-223 (444)
274 PRK05086 malate dehydrogenase; 91.3 0.53 1.2E-05 43.0 6.2 87 123-227 10-115 (312)
275 COG0569 TrkA K+ transport syst 91.3 0.88 1.9E-05 39.5 7.3 89 122-228 8-98 (225)
276 TIGR01759 MalateDH-SF1 malate 91.2 0.8 1.7E-05 42.1 7.3 94 123-229 13-127 (323)
277 PRK14193 bifunctional 5,10-met 91.2 3 6.4E-05 37.6 10.7 156 11-228 62-229 (284)
278 PRK14190 bifunctional 5,10-met 91.1 2.3 4.9E-05 38.4 9.8 163 10-229 61-228 (284)
279 PRK12549 shikimate 5-dehydroge 91.0 0.59 1.3E-05 42.1 6.1 68 122-206 135-203 (284)
280 PRK14192 bifunctional 5,10-met 91.0 4.3 9.2E-05 36.6 11.6 160 10-228 62-228 (283)
281 PRK14177 bifunctional 5,10-met 90.8 3.6 7.8E-05 37.1 10.9 162 11-229 63-229 (284)
282 cd05296 GH4_P_beta_glucosidase 90.8 0.23 5E-06 47.3 3.5 65 1-68 66-166 (419)
283 PRK05442 malate dehydrogenase; 90.3 0.81 1.8E-05 42.1 6.4 90 123-228 14-127 (326)
284 TIGR02992 ectoine_eutC ectoine 90.2 1.5 3.2E-05 40.3 8.1 83 122-228 137-221 (326)
285 PF00725 3HCDH: 3-hydroxyacyl- 90.1 0.17 3.7E-06 37.6 1.6 34 115-155 1-34 (97)
286 COG4074 Mth H2-forming N5,N10- 89.9 1.2 2.6E-05 38.5 6.7 102 183-287 127-232 (343)
287 PRK14182 bifunctional 5,10-met 89.9 5.3 0.00012 35.9 11.1 160 11-228 60-226 (282)
288 COG0039 Mdh Malate/lactate deh 89.8 1 2.2E-05 41.1 6.6 93 122-228 8-116 (313)
289 KOG0069|consensus 89.5 1.9 4.1E-05 39.8 8.1 136 122-283 170-316 (336)
290 PRK14176 bifunctional 5,10-met 89.5 5.7 0.00012 35.9 11.0 161 12-229 69-234 (287)
291 PF01113 DapB_N: Dihydrodipico 89.4 0.5 1.1E-05 37.0 3.8 99 120-240 7-107 (124)
292 cd01337 MDH_glyoxysomal_mitoch 89.4 0.84 1.8E-05 41.7 5.8 86 123-228 10-114 (310)
293 TIGR01915 npdG NADPH-dependent 89.3 2.4 5.2E-05 36.4 8.4 102 3-109 61-187 (219)
294 COG1712 Predicted dinucleotide 89.2 4.5 9.7E-05 35.2 9.6 86 122-235 8-96 (255)
295 cd05197 GH4_glycoside_hydrolas 89.2 0.57 1.2E-05 44.7 4.7 63 1-68 65-166 (425)
296 PF02254 TrkA_N: TrkA-N domain 89.1 3.1 6.7E-05 31.4 8.1 86 122-228 6-94 (116)
297 PF02056 Glyco_hydro_4: Family 89.1 0.19 4.2E-06 42.2 1.3 65 1-68 64-167 (183)
298 cd00704 MDH Malate dehydrogena 89.1 0.71 1.5E-05 42.4 5.1 92 122-228 9-123 (323)
299 TIGR00465 ilvC ketol-acid redu 89.1 5.6 0.00012 36.4 10.9 101 3-105 52-161 (314)
300 COG1748 LYS9 Saccharopine dehy 89.0 0.94 2E-05 42.6 5.9 73 122-209 9-82 (389)
301 PRK06407 ornithine cyclodeamin 89.0 1.5 3.2E-05 39.9 7.1 89 114-229 120-210 (301)
302 KOG3124|consensus 89.0 6.4 0.00014 34.8 10.6 100 187-289 54-154 (267)
303 TIGR01758 MDH_euk_cyt malate d 88.9 1.3 2.9E-05 40.6 6.8 95 122-229 8-123 (324)
304 PLN02616 tetrahydrofolate dehy 88.9 6.2 0.00013 36.7 11.0 152 15-228 137-300 (364)
305 TIGR00507 aroE shikimate 5-deh 88.8 1.2 2.6E-05 39.6 6.4 34 122-155 125-158 (270)
306 PLN02897 tetrahydrofolate dehy 88.8 5.4 0.00012 36.9 10.6 156 11-228 116-283 (345)
307 PF01210 NAD_Gly3P_dh_N: NAD-d 88.7 0.54 1.2E-05 38.3 3.7 47 1-49 60-106 (157)
308 cd01338 MDH_choloroplast_like 88.5 1.1 2.4E-05 41.1 6.0 93 123-228 12-125 (322)
309 PTZ00325 malate dehydrogenase; 88.4 1.1 2.4E-05 41.2 5.8 24 122-145 17-42 (321)
310 PRK14185 bifunctional 5,10-met 88.4 6.5 0.00014 35.6 10.7 161 11-228 61-230 (293)
311 PRK14618 NAD(P)H-dependent gly 88.2 1 2.2E-05 41.2 5.6 103 2-115 66-181 (328)
312 PRK08291 ectoine utilization p 88.0 1.1 2.4E-05 41.2 5.7 68 122-207 140-209 (330)
313 PRK10669 putative cation:proto 88.0 2.1 4.6E-05 42.3 8.1 88 122-228 425-513 (558)
314 PRK06046 alanine dehydrogenase 87.8 2.3 4.9E-05 39.1 7.6 89 114-230 132-222 (326)
315 PRK14168 bifunctional 5,10-met 87.8 7.7 0.00017 35.2 10.7 159 12-228 64-234 (297)
316 PLN02516 methylenetetrahydrofo 87.7 9.6 0.00021 34.6 11.3 161 11-228 69-236 (299)
317 PRK00258 aroE shikimate 5-dehy 87.7 1.7 3.6E-05 38.9 6.6 66 122-207 131-197 (278)
318 COG0240 GpsA Glycerol-3-phosph 87.6 1.5 3.2E-05 40.2 6.1 94 1-101 62-168 (329)
319 PF02423 OCD_Mu_crystall: Orni 87.1 1.3 2.8E-05 40.5 5.5 92 114-231 131-224 (313)
320 PRK14167 bifunctional 5,10-met 87.1 10 0.00022 34.5 11.0 161 11-228 61-230 (297)
321 PRK03659 glutathione-regulated 86.8 2.6 5.5E-05 42.2 7.9 92 122-232 408-500 (601)
322 cd01336 MDH_cytoplasmic_cytoso 86.7 1.1 2.3E-05 41.2 4.8 94 122-228 11-125 (325)
323 TIGR01035 hemA glutamyl-tRNA r 86.5 1.6 3.5E-05 41.5 6.0 64 122-207 188-252 (417)
324 PRK14181 bifunctional 5,10-met 86.2 11 0.00024 34.1 10.8 160 11-228 56-226 (287)
325 COG0059 IlvC Ketol-acid reduct 86.2 9.2 0.0002 34.8 10.1 79 122-228 26-106 (338)
326 PRK14174 bifunctional 5,10-met 86.2 18 0.00039 32.8 12.3 156 11-228 61-232 (295)
327 PF12847 Methyltransf_18: Meth 86.2 3.3 7.1E-05 30.9 6.5 76 136-228 24-108 (112)
328 PRK05579 bifunctional phosphop 86.1 2.2 4.8E-05 40.4 6.7 70 78-147 159-238 (399)
329 PRK15059 tartronate semialdehy 86.0 3.1 6.7E-05 37.6 7.3 107 2-112 47-161 (292)
330 COG0686 Ald Alanine dehydrogen 86.0 1.6 3.6E-05 39.7 5.3 108 102-228 153-265 (371)
331 PRK12439 NAD(P)H-dependent gly 85.7 1.7 3.7E-05 40.1 5.7 107 1-116 68-188 (341)
332 PRK14178 bifunctional 5,10-met 85.4 23 0.0005 31.9 12.4 161 11-228 56-221 (279)
333 PRK06823 ornithine cyclodeamin 85.3 4.9 0.00011 36.8 8.3 85 122-231 136-222 (315)
334 KOG0068|consensus 85.3 7.9 0.00017 35.7 9.3 123 78-228 93-233 (406)
335 cd06533 Glyco_transf_WecG_TagA 85.3 4.6 9.9E-05 33.4 7.5 91 131-228 40-130 (171)
336 COG0499 SAM1 S-adenosylhomocys 85.1 5.3 0.00011 37.1 8.2 84 122-236 217-300 (420)
337 PF01408 GFO_IDH_MocA: Oxidore 84.8 8.5 0.00018 29.1 8.4 72 122-219 8-84 (120)
338 PRK00048 dihydrodipicolinate r 84.7 2.5 5.5E-05 37.4 6.0 87 123-239 11-99 (257)
339 CHL00194 ycf39 Ycf39; Provisio 84.6 5.1 0.00011 36.3 8.2 65 122-204 9-73 (317)
340 PLN00203 glutamyl-tRNA reducta 84.5 3.4 7.3E-05 40.5 7.2 78 122-218 274-353 (519)
341 PRK00045 hemA glutamyl-tRNA re 84.3 2.2 4.8E-05 40.7 5.8 73 122-216 190-264 (423)
342 COG2910 Putative NADH-flavin r 84.3 1.6 3.4E-05 36.8 4.1 30 122-151 9-38 (211)
343 PRK14184 bifunctional 5,10-met 84.1 22 0.00048 32.1 11.7 160 12-228 62-230 (286)
344 PF02882 THF_DHG_CYH_C: Tetrah 84.0 6.6 0.00014 32.3 7.7 90 89-229 17-106 (160)
345 COG0190 FolD 5,10-methylene-te 83.9 3.3 7.3E-05 37.1 6.3 159 13-228 62-225 (283)
346 cd01076 NAD_bind_1_Glu_DH NAD( 83.8 9 0.0002 33.3 9.0 57 83-145 6-63 (227)
347 TIGR02356 adenyl_thiF thiazole 83.7 15 0.00033 31.1 10.2 25 122-146 29-54 (202)
348 cd01079 NAD_bind_m-THF_DH NAD 83.4 4.1 8.9E-05 34.6 6.3 82 116-229 66-154 (197)
349 PRK03692 putative UDP-N-acetyl 83.1 6.6 0.00014 34.6 7.9 87 133-228 101-188 (243)
350 PRK12480 D-lactate dehydrogena 83.1 2.7 5.8E-05 38.8 5.6 73 2-74 190-265 (330)
351 TIGR01763 MalateDH_bact malate 82.9 1.6 3.5E-05 39.7 4.1 86 1-106 61-163 (305)
352 COG0345 ProC Pyrroline-5-carbo 82.9 12 0.00026 33.4 9.5 104 1-109 53-157 (266)
353 PF01118 Semialdhyde_dh: Semia 82.8 1.5 3.2E-05 33.9 3.4 93 122-237 8-103 (121)
354 PRK09496 trkA potassium transp 82.5 5.7 0.00012 37.8 7.9 88 122-228 8-97 (453)
355 PLN03075 nicotianamine synthas 82.1 40 0.00086 30.6 13.6 121 122-259 132-266 (296)
356 PRK01747 mnmC bifunctional tRN 82.0 4.1 9E-05 41.1 7.0 28 26-53 186-213 (662)
357 PRK12475 thiamine/molybdopteri 81.9 10 0.00023 35.0 9.1 26 122-147 32-58 (338)
358 COG2227 UbiG 2-polyprenyl-3-me 81.8 6.3 0.00014 34.5 7.1 140 46-233 9-163 (243)
359 PRK04207 glyceraldehyde-3-phos 81.6 12 0.00025 34.7 9.3 97 122-233 9-111 (341)
360 PF00185 OTCace: Aspartate/orn 81.6 6.4 0.00014 32.1 6.8 74 115-204 6-82 (158)
361 PRK09310 aroDE bifunctional 3- 81.6 5.4 0.00012 38.7 7.4 64 122-208 340-403 (477)
362 COG4074 Mth H2-forming N5,N10- 81.3 6.9 0.00015 33.9 7.0 104 1-107 130-237 (343)
363 TIGR01809 Shik-DH-AROM shikima 81.1 4.2 9.1E-05 36.5 6.1 69 122-207 133-202 (282)
364 PLN00135 malate dehydrogenase 81.1 9.3 0.0002 34.9 8.3 48 182-229 45-106 (309)
365 PF03720 UDPG_MGDP_dh_C: UDP-g 81.1 5.6 0.00012 30.0 5.9 79 126-228 19-98 (106)
366 COG0300 DltE Short-chain dehyd 80.8 3.4 7.3E-05 36.9 5.2 40 122-161 15-54 (265)
367 smart00859 Semialdhyde_dh Semi 80.7 7.3 0.00016 29.9 6.6 41 194-236 64-104 (122)
368 KOG1014|consensus 80.4 3.3 7.2E-05 37.6 5.0 40 122-161 58-97 (312)
369 PF00107 ADH_zinc_N: Zinc-bind 80.0 4.5 9.8E-05 31.0 5.3 83 125-228 2-86 (130)
370 COG0373 HemA Glutamyl-tRNA red 79.8 8.8 0.00019 36.5 7.9 64 122-207 186-250 (414)
371 TIGR00872 gnd_rel 6-phosphoglu 79.7 9.2 0.0002 34.5 7.9 97 4-105 53-154 (298)
372 PRK13940 glutamyl-tRNA reducta 79.6 9.3 0.0002 36.4 8.1 65 122-207 189-254 (414)
373 cd05295 MDH_like Malate dehydr 79.4 22 0.00049 34.2 10.6 86 122-222 132-240 (452)
374 PRK15076 alpha-galactosidase; 78.6 3.5 7.5E-05 39.5 4.9 20 1-20 66-85 (431)
375 PRK13301 putative L-aspartate 78.6 22 0.00047 31.8 9.5 67 122-216 10-81 (267)
376 PLN00106 malate dehydrogenase 78.4 3.2 6.9E-05 38.2 4.4 93 2-118 78-191 (323)
377 COG1486 CelF Alpha-galactosida 77.9 4.5 9.8E-05 38.6 5.3 55 136-203 31-85 (442)
378 PRK09496 trkA potassium transp 77.5 29 0.00063 33.0 11.0 34 122-155 239-272 (453)
379 KOG2653|consensus 77.4 42 0.00091 31.4 11.1 137 122-287 14-163 (487)
380 PF10727 Rossmann-like: Rossma 77.2 4.8 0.0001 31.7 4.5 66 2-69 60-127 (127)
381 PF03435 Saccharop_dh: Sacchar 77.2 3.6 7.7E-05 38.5 4.5 72 122-207 6-79 (386)
382 COG1063 Tdh Threonine dehydrog 76.2 8.8 0.00019 35.5 6.8 34 122-155 177-211 (350)
383 PRK06444 prephenate dehydrogen 76.0 27 0.00058 29.7 9.1 87 8-109 29-119 (197)
384 PLN00135 malate dehydrogenase 76.0 5.9 0.00013 36.2 5.4 86 2-107 50-154 (309)
385 cd01080 NAD_bind_m-THF_DH_Cycl 75.8 6.7 0.00014 32.4 5.3 62 122-229 52-114 (168)
386 PRK12490 6-phosphogluconate de 75.7 27 0.00058 31.5 9.7 100 2-109 48-162 (299)
387 TIGR00696 wecB_tagA_cpsF bacte 75.0 16 0.00034 30.5 7.3 87 132-227 43-130 (177)
388 PRK13982 bifunctional SbtC-lik 75.0 9.7 0.00021 36.9 6.9 78 66-144 210-303 (475)
389 PRK07877 hypothetical protein; 74.7 8.1 0.00018 39.5 6.5 89 122-216 115-216 (722)
390 PRK11861 bifunctional prephena 74.4 13 0.00028 37.7 8.0 89 23-111 8-111 (673)
391 TIGR00036 dapB dihydrodipicoli 74.3 7.7 0.00017 34.5 5.7 95 122-239 10-107 (266)
392 PRK03562 glutathione-regulated 74.2 14 0.0003 37.2 8.0 86 122-228 408-496 (621)
393 COG2006 Uncharacterized conser 73.9 41 0.00089 30.1 9.8 57 83-144 54-112 (293)
394 PRK06732 phosphopantothenate-- 73.6 3.9 8.5E-05 35.5 3.6 31 116-146 19-49 (229)
395 TIGR03466 HpnA hopanoid-associ 73.6 5.1 0.00011 35.9 4.5 28 122-149 9-36 (328)
396 PF03808 Glyco_tran_WecB: Glyc 73.5 17 0.00037 30.0 7.2 98 129-234 40-137 (172)
397 PRK11036 putative S-adenosyl-L 73.3 34 0.00074 29.9 9.6 83 129-228 58-146 (255)
398 PF13561 adh_short_C2: Enoyl-( 73.2 8.1 0.00018 33.2 5.5 37 123-159 6-42 (241)
399 PRK05086 malate dehydrogenase; 73.1 6.9 0.00015 35.7 5.2 87 2-108 61-168 (312)
400 PRK09620 hypothetical protein; 73.0 3.9 8.5E-05 35.6 3.4 30 116-145 22-51 (229)
401 PRK07589 ornithine cyclodeamin 73.0 14 0.0003 34.4 7.1 70 137-229 154-223 (346)
402 TIGR01756 LDH_protist lactate 73.0 6.3 0.00014 36.1 4.9 86 2-109 52-158 (313)
403 PRK12548 shikimate 5-dehydroge 72.8 7.6 0.00016 35.0 5.3 27 122-148 134-161 (289)
404 PRK13256 thiopurine S-methyltr 72.6 19 0.00041 31.3 7.5 91 130-228 58-160 (226)
405 KOG1502|consensus 72.5 6 0.00013 36.3 4.5 72 122-203 15-86 (327)
406 cd05298 GH4_GlvA_pagL_like Gly 72.4 6.8 0.00015 37.6 5.1 63 1-68 65-166 (437)
407 PRK09599 6-phosphogluconate de 72.4 17 0.00037 32.7 7.6 99 2-109 48-163 (301)
408 PRK08644 thiamine biosynthesis 71.9 8.1 0.00018 33.1 5.1 42 4-46 111-152 (212)
409 TIGR00670 asp_carb_tr aspartat 71.5 80 0.0017 28.7 12.5 89 90-201 133-222 (301)
410 TIGR00521 coaBC_dfp phosphopan 71.4 16 0.00035 34.5 7.3 65 79-145 156-233 (390)
411 COG0565 LasT rRNA methylase [T 70.9 9.6 0.00021 33.4 5.2 103 123-242 16-128 (242)
412 PLN02780 ketoreductase/ oxidor 70.8 8.2 0.00018 35.2 5.1 38 122-159 62-99 (320)
413 TIGR01756 LDH_protist lactate 70.5 23 0.0005 32.4 8.0 42 186-227 51-106 (313)
414 cd05312 NAD_bind_1_malic_enz N 70.3 44 0.00095 30.1 9.4 150 87-258 4-172 (279)
415 TIGR02114 coaB_strep phosphopa 69.5 5.5 0.00012 34.6 3.5 30 116-145 18-47 (227)
416 PRK03522 rumB 23S rRNA methylu 69.4 81 0.0017 28.6 11.3 117 130-267 188-309 (315)
417 PLN03209 translocon at the inn 69.3 45 0.00097 33.2 10.1 36 122-157 89-124 (576)
418 cd01487 E1_ThiF_like E1_ThiF_l 69.2 11 0.00025 31.1 5.3 32 3-35 81-112 (174)
419 PF03447 NAD_binding_3: Homose 69.1 8.1 0.00017 29.4 4.1 82 122-231 2-90 (117)
420 KOG1495|consensus 68.7 14 0.0003 33.1 5.8 68 122-204 28-97 (332)
421 PF04127 DFP: DNA / pantothena 68.5 7.1 0.00015 32.8 3.9 32 115-146 21-52 (185)
422 PF13380 CoA_binding_2: CoA bi 68.3 13 0.00029 28.5 5.1 76 123-230 13-88 (116)
423 COG1064 AdhP Zn-dependent alco 68.3 26 0.00057 32.4 7.8 33 123-155 176-208 (339)
424 PRK13255 thiopurine S-methyltr 68.1 35 0.00076 29.3 8.2 88 125-225 48-149 (218)
425 PRK08339 short chain dehydroge 68.0 11 0.00024 33.0 5.3 37 122-158 17-53 (263)
426 PRK05854 short chain dehydroge 68.0 15 0.00033 33.1 6.3 37 122-158 23-59 (313)
427 PRK06199 ornithine cyclodeamin 67.7 73 0.0016 30.0 10.8 89 122-228 163-256 (379)
428 PRK05442 malate dehydrogenase; 67.5 5.1 0.00011 36.9 3.0 84 3-107 73-176 (326)
429 PRK08340 glucose-1-dehydrogena 67.4 12 0.00025 32.6 5.2 37 122-158 9-45 (259)
430 PF05368 NmrA: NmrA-like famil 66.7 22 0.00048 30.3 6.8 78 122-215 7-88 (233)
431 TIGR00477 tehB tellurite resis 66.7 49 0.0011 27.7 8.8 81 130-226 45-128 (195)
432 PLN02353 probable UDP-glucose 66.4 48 0.001 32.2 9.5 102 1-109 69-206 (473)
433 PRK07063 short chain dehydroge 66.0 13 0.00028 32.2 5.2 37 122-158 16-52 (260)
434 cd01489 Uba2_SUMO Ubiquitin ac 65.9 84 0.0018 28.8 10.6 156 122-284 7-175 (312)
435 cd05294 LDH-like_MDH_nadp A la 65.6 9.9 0.00021 34.6 4.5 86 2-107 65-167 (309)
436 PRK07523 gluconate 5-dehydroge 65.6 14 0.0003 32.0 5.3 36 122-157 19-54 (255)
437 PRK12550 shikimate 5-dehydroge 65.3 27 0.00059 31.2 7.2 33 122-154 130-163 (272)
438 TIGR03376 glycerol3P_DH glycer 65.1 12 0.00026 34.7 5.0 50 1-52 73-122 (342)
439 PLN00016 RNA-binding protein; 64.9 14 0.00031 34.3 5.6 28 122-149 65-92 (378)
440 KOG1370|consensus 64.8 30 0.00066 31.6 7.2 76 122-228 222-298 (434)
441 PLN02214 cinnamoyl-CoA reducta 64.8 25 0.00055 32.1 7.2 28 122-149 19-46 (342)
442 PRK08605 D-lactate dehydrogena 64.6 27 0.00059 32.1 7.3 57 2-58 192-250 (332)
443 cd00300 LDH_like L-lactate deh 64.5 28 0.00061 31.5 7.2 84 5-109 61-163 (300)
444 PRK07688 thiamine/molybdopteri 63.5 42 0.00091 31.0 8.3 26 122-147 32-58 (339)
445 PRK07478 short chain dehydroge 63.4 16 0.00034 31.6 5.2 37 122-158 15-51 (254)
446 TIGR01759 MalateDH-SF1 malate 63.2 7.1 0.00015 35.9 3.1 86 3-109 72-177 (323)
447 PRK15469 ghrA bifunctional gly 63.1 13 0.00027 34.0 4.7 72 2-73 182-256 (312)
448 PRK06124 gluconate 5-dehydroge 63.0 23 0.00049 30.5 6.2 37 121-157 19-55 (256)
449 PRK07890 short chain dehydroge 62.8 16 0.00035 31.4 5.2 36 122-157 14-49 (258)
450 PRK08862 short chain dehydroge 62.8 16 0.00035 31.3 5.2 36 123-158 15-50 (227)
451 PRK05867 short chain dehydroge 62.7 16 0.00036 31.4 5.3 36 122-157 18-53 (253)
452 PF03446 NAD_binding_2: NAD bi 62.5 5.7 0.00012 32.4 2.1 102 2-107 49-158 (163)
453 PRK07814 short chain dehydroge 62.4 17 0.00036 31.7 5.3 36 122-157 19-54 (263)
454 cd05211 NAD_bind_Glu_Leu_Phe_V 62.3 66 0.0014 27.7 8.8 55 87-147 2-57 (217)
455 TIGR02130 dapB_plant dihydrodi 61.9 27 0.00058 31.4 6.4 98 117-242 4-111 (275)
456 PRK07231 fabG 3-ketoacyl-(acyl 61.9 16 0.00035 31.2 5.0 35 122-156 14-48 (251)
457 PRK08085 gluconate 5-dehydroge 61.9 17 0.00038 31.3 5.3 36 122-157 18-53 (254)
458 PF00056 Ldh_1_N: lactate/mala 61.4 4.9 0.00011 32.1 1.5 63 3-66 62-141 (141)
459 KOG1201|consensus 61.4 11 0.00025 34.0 4.0 37 123-159 48-84 (300)
460 TIGR01777 yfcH conserved hypot 61.3 21 0.00045 31.3 5.8 29 122-150 7-35 (292)
461 PRK13394 3-hydroxybutyrate deh 61.3 17 0.00037 31.3 5.1 37 122-158 16-52 (262)
462 PRK06172 short chain dehydroge 60.9 19 0.00041 31.0 5.3 36 122-157 16-51 (253)
463 PRK08703 short chain dehydroge 60.8 18 0.00039 30.8 5.1 34 122-155 15-48 (239)
464 PRK07062 short chain dehydroge 60.7 18 0.00039 31.4 5.2 36 122-157 17-52 (265)
465 PRK08945 putative oxoacyl-(acy 60.7 18 0.00039 31.0 5.1 36 122-157 21-56 (247)
466 PRK05876 short chain dehydroge 60.4 19 0.0004 31.8 5.2 36 122-157 15-50 (275)
467 PF03848 TehB: Tellurite resis 60.4 17 0.00037 30.8 4.7 88 124-228 40-130 (192)
468 PRK11207 tellurite resistance 60.1 53 0.0011 27.5 7.8 79 130-226 45-129 (197)
469 COG4221 Short-chain alcohol de 59.7 17 0.00037 32.0 4.6 36 123-158 16-51 (246)
470 TIGR03366 HpnZ_proposed putati 59.6 41 0.00089 29.6 7.3 34 122-155 129-163 (280)
471 PRK15451 tRNA cmo(5)U34 methyl 59.3 42 0.00092 29.2 7.3 76 136-228 81-161 (247)
472 KOG1200|consensus 59.3 80 0.0017 27.2 8.3 32 124-155 25-56 (256)
473 cd00704 MDH Malate dehydrogena 59.1 16 0.00035 33.5 4.7 91 2-107 68-172 (323)
474 PRK06194 hypothetical protein; 58.9 20 0.00043 31.5 5.2 35 122-156 15-49 (287)
475 PRK05866 short chain dehydroge 58.8 21 0.00045 31.9 5.3 36 122-157 49-84 (293)
476 PRK14027 quinate/shikimate deh 58.6 29 0.00063 31.2 6.2 34 122-155 135-169 (283)
477 PF08123 DOT1: Histone methyla 58.5 81 0.0017 26.9 8.6 107 124-236 52-162 (205)
478 PRK08643 acetoin reductase; Va 58.5 21 0.00046 30.7 5.2 36 122-157 11-46 (256)
479 PRK02318 mannitol-1-phosphate 58.5 17 0.00038 34.0 4.9 34 122-155 8-42 (381)
480 PRK07326 short chain dehydroge 58.3 29 0.00062 29.4 6.0 35 122-156 15-49 (237)
481 PRK08277 D-mannonate oxidoredu 58.2 22 0.00047 31.2 5.3 36 122-157 19-54 (278)
482 PRK06139 short chain dehydroge 58.1 21 0.00046 32.6 5.4 37 122-158 16-52 (330)
483 PRK08265 short chain dehydroge 58.1 18 0.0004 31.4 4.8 34 122-155 15-48 (261)
484 PRK06718 precorrin-2 dehydroge 57.8 1.2E+02 0.0025 25.7 10.2 25 122-146 18-42 (202)
485 PRK12429 3-hydroxybutyrate deh 57.7 23 0.00049 30.4 5.3 36 122-157 13-48 (258)
486 PRK06101 short chain dehydroge 57.6 18 0.0004 30.9 4.7 32 122-153 10-41 (240)
487 KOG2666|consensus 57.6 61 0.0013 29.9 7.8 90 137-236 26-131 (481)
488 PRK00683 murD UDP-N-acetylmura 57.5 27 0.00059 33.0 6.1 29 122-150 11-39 (418)
489 PRK14804 ornithine carbamoyltr 57.4 81 0.0018 28.8 8.9 91 90-201 134-224 (311)
490 cd05291 HicDH_like L-2-hydroxy 56.9 12 0.00026 33.9 3.5 83 6-107 64-163 (306)
491 PRK07454 short chain dehydroge 56.9 24 0.00053 30.0 5.3 35 122-156 15-49 (241)
492 PRK07035 short chain dehydroge 56.9 25 0.00053 30.2 5.3 36 122-157 17-52 (252)
493 PF13847 Methyltransf_31: Meth 56.8 36 0.00078 27.0 5.9 74 137-228 28-107 (152)
494 PRK06720 hypothetical protein; 56.8 26 0.00056 28.8 5.1 34 122-155 25-58 (169)
495 PRK07831 short chain dehydroge 56.6 23 0.0005 30.7 5.1 36 124-159 29-64 (262)
496 PRK07067 sorbitol dehydrogenas 56.5 21 0.00046 30.8 4.9 34 122-155 15-48 (257)
497 PRK09072 short chain dehydroge 56.3 22 0.00048 30.8 5.0 34 122-155 14-47 (263)
498 TIGR01772 MDH_euk_gproteo mala 56.3 15 0.00032 33.6 3.9 91 3-117 60-171 (312)
499 PRK07832 short chain dehydroge 56.0 25 0.00054 30.7 5.3 36 122-157 9-44 (272)
500 COG4007 Predicted dehydrogenas 55.9 1.3E+02 0.0029 26.9 9.5 88 24-113 95-197 (340)
No 1
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=8e-44 Score=342.22 Aligned_cols=280 Identities=15% Similarity=0.134 Sum_probs=205.9
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|++ ++++||+|||||+|++++|+.+|+++++.|++++|++||||++++++|++.+.+|+|++|+|||||++.|+|+||
T Consensus 79 ~~~~-~~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEv 157 (507)
T PRK08268 79 EALA-DLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEV 157 (507)
T ss_pred CCHH-HhCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEE
Confidence 5675 578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHH-----
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT----- 156 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~----- 156 (290)
++|..|++++++.+..+++++||.|+.+ +|+|||++||++..+..+...++.+.| .+++++++++..
T Consensus 158 v~g~~Ts~~~~~~~~~l~~~lgk~pv~v-~d~pGfi~Nrll~~~~~Ea~~l~~~g~-------~~~~~iD~al~~~~G~~ 229 (507)
T PRK08268 158 VSGLATDPAVADALYALARAWGKTPVRA-KDTPGFIVNRAARPYYTEALRVLEEGV-------ADPATIDAILREAAGFR 229 (507)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCceEEe-cCCCChHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999 799999999999888888666655554 567777777642
Q ss_pred -----------HH---HHHHHHHHcCCCCCCCChhhhhcc---------------cccCCchHhhcccCcE--EEE----
Q psy17416 157 -----------IQ---HTLQDYHQKGCLKGSLSPEEQFGL---------------ISGTPVLRECLEDAIF--IQE---- 201 (290)
Q Consensus 157 -----------i~---~~~~~~~~~g~~~~~~~~~~~~~~---------------i~~~~~l~~~l~~aDl--Vie---- 201 (290)
+. +....+...........+...+.. ..+...-...-.+.+. +..
T Consensus 230 mGPf~l~D~~Gldv~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~ 309 (507)
T PRK08268 230 MGPFELMDLIGLDVNHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWV 309 (507)
T ss_pred cCHHHHHHHhchHHHHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccc
Confidence 00 000011110000000100000000 1110000000000000 000
Q ss_pred --ccccchHHHHHHHHHH-------hhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCC
Q psy17416 202 --SVPEILQIKHQVYRAI-------DIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWT 272 (290)
Q Consensus 202 --avpe~~~~k~~~~~~l-------~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t 272 (290)
..+........++.+. ...+.++++++++.++.+.+..+....+|+|++|+|||+|++.++++||+++++|
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~T 389 (507)
T PRK08268 310 SADVEGDLAALARLLERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPAT 389 (507)
T ss_pred cccccchhHHHHHHHHhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCC
Confidence 0011111112222111 2356788889888888888888877788999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCC
Q psy17416 273 SERVITRTREIMTEIGMK 290 (290)
Q Consensus 273 ~~e~~~~~~~~~~~lgk~ 290 (290)
++++++++.+|++.+||+
T Consensus 390 s~e~~~~~~~~~~~~gk~ 407 (507)
T PRK08268 390 SPAARDAAHALFQQDGKA 407 (507)
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 999999999999999995
No 2
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=2e-43 Score=315.64 Aligned_cols=146 Identities=30% Similarity=0.444 Sum_probs=137.3
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|++ ++++||+|||||+||+++|+++|++++++++||||||||||+|||++|++.++||+||+||||||||++|+|||
T Consensus 74 ~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVE 152 (307)
T COG1250 74 TTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVE 152 (307)
T ss_pred cCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEE
Confidence 35666 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+|.+|++++++.+.+|++++||+|+++ +|+|||++||++..+.+++..++..+. .+++.+|+++.
T Consensus 153 vI~g~~T~~e~~~~~~~~~~~igK~~vv~-~D~pGFi~NRil~~~~~eA~~l~~eGv-------a~~e~ID~~~~ 219 (307)
T COG1250 153 VIRGEKTSDETVERVVEFAKKIGKTPVVV-KDVPGFIVNRLLAALLNEAIRLLEEGV-------ATPEEIDAAMR 219 (307)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCCCEee-cCCCceehHhHHHHHHHHHHHHHHhCC-------CCHHHHHHHHH
Confidence 99999999999999999999999999765 899999999999999999777776653 78999999887
No 3
>KOG2304|consensus
Probab=100.00 E-value=1e-41 Score=285.24 Aligned_cols=147 Identities=24% Similarity=0.340 Sum_probs=141.7
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+.++++|||+||||+.||+++|+++|++|++.|+++||++|||||+.+++++..+++|+||.|+|||||+|.|.|||
T Consensus 87 ~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvE 166 (298)
T KOG2304|consen 87 STNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVE 166 (298)
T ss_pred cCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+++.||++++.....|++++||+||.+ +|+||||+||++-+|..+...++.++ |.+.|++|.|++
T Consensus 167 Vir~~~TS~eTf~~l~~f~k~~gKttVac-kDtpGFIVNRlLiPyl~ea~r~yerG-------dAskeDIDtaMk 233 (298)
T KOG2304|consen 167 VIRTDDTSDETFNALVDFGKAVGKTTVAC-KDTPGFIVNRLLIPYLMEAIRMYERG-------DASKEDIDTAMK 233 (298)
T ss_pred hhcCCCCCHHHHHHHHHHHHHhCCCceee-cCCCchhhhHHHHHHHHHHHHHHHhc-------CCcHhhHHHHHh
Confidence 99999999999999999999999999988 89999999999999999988887764 689999999998
No 4
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1e-40 Score=302.61 Aligned_cols=148 Identities=28% Similarity=0.496 Sum_probs=140.4
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+++++++||+|||||||++++|+++|+++++.|+++|||+||||++++++|++.+++|+||+|+||||||++|||||
T Consensus 74 ~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVE 153 (321)
T PRK07066 74 VATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVE 153 (321)
T ss_pred cCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
|++|++|++++++.+.+|++++||+||++++|+|||++||++..+.+++..++.++. .+++++|++++
T Consensus 154 Vv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGv-------as~edID~a~~ 221 (321)
T PRK07066 154 VLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGV-------ATTGEIDDAIR 221 (321)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHH
Confidence 999999999999999999999999999998899999999999999999766666543 68999999876
No 5
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=4.5e-39 Score=270.60 Aligned_cols=167 Identities=35% Similarity=0.559 Sum_probs=145.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||++||.+++..|++|.+||++++.++++.+++++.++.++++|.+... .....++++++++|++++. +||+|||
T Consensus 7 aG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~i~~~~dl~~~~-~adlViE 84 (180)
T PF02737_consen 7 AGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQE-EADAALARISFTTDLEEAV-DADLVIE 84 (180)
T ss_dssp -SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHH-HHHHHHHTEEEESSGGGGC-TESEEEE
T ss_pred CCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhh-hhhhhhhhcccccCHHHHh-hhheehh
Confidence 6999999999999999999999999999999999999999999998877642 3566789999999999876 9999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+||++++|+++|++|++.+++++||+||||+++++++++.+.+|+||+|+|||+|++.+|+|||+++++|++++++++.
T Consensus 85 ai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~ 164 (180)
T PF02737_consen 85 AIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETVDRVR 164 (180)
T ss_dssp -S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 165 ~~~~~~gk~ 173 (180)
T PF02737_consen 165 ALLRSLGKT 173 (180)
T ss_dssp HHHHHTT-E
T ss_pred HHHHHCCCE
Confidence 999999984
No 6
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=1.3e-38 Score=284.66 Aligned_cols=167 Identities=33% Similarity=0.478 Sum_probs=160.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||++||+.++..|++|+++|++++.+++++..+.+.+++++++|.++.. .....+++|+.++++. ++++||+|||
T Consensus 11 aG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~-~~~~~l~~i~~~~~~~-~l~~~DlVIE 88 (307)
T COG1250 11 AGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEE-EADAALARITPTTDLA-ALKDADLVIE 88 (307)
T ss_pred ccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChh-hHHHHHhhccccCchh-HhccCCEEEE
Confidence 7999999999999988999999999999999999999999999999888763 4677899999999998 6999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|++|++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||+++|+||||++|..|++++++++.
T Consensus 89 Av~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~ 168 (307)
T COG1250 89 AVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVV 168 (307)
T ss_pred eccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|.+.+||+
T Consensus 169 ~~~~~igK~ 177 (307)
T COG1250 169 EFAKKIGKT 177 (307)
T ss_pred HHHHHcCCC
Confidence 999999985
No 7
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=3e-38 Score=314.36 Aligned_cols=145 Identities=21% Similarity=0.312 Sum_probs=135.7
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+ +++++||+|||||+|++++|+++|++|+++|+||||||||||+||+++|++.+++|+||+|||||||++.|||||
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvE 462 (714)
T TIGR02437 384 TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVE 462 (714)
T ss_pred eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEe
Confidence 3567 478999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+|+.||+++++.+.+|++++||+||+| +|+|||++||++..+.+++..++. .| .+++++|+++.
T Consensus 463 vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v-~d~pGfi~NRl~~~~~~ea~~l~~-eG-------~~~~~ID~a~~ 528 (714)
T TIGR02437 463 VIRGEKSSDETIATVVAYASKMGKTPIVV-NDCPGFFVNRVLFPYFGGFSKLLR-DG-------ADFVRIDKVME 528 (714)
T ss_pred ecCCCCCCHHHHHHHHHHHHHcCCEEEEe-CCcccchHHHHHHHHHHHHHHHHH-CC-------CCHHHHHHHHH
Confidence 99999999999999999999999999999 799999999999999998666554 45 57899998875
No 8
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=5.3e-38 Score=313.25 Aligned_cols=145 Identities=20% Similarity=0.257 Sum_probs=136.4
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|++ ++++||+|||||+||+++|+++|++|+++|+|+|||+||||+||+++|++.+++|+||+|+|||||++.|+|||
T Consensus 406 ~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvE 484 (737)
T TIGR02441 406 TLDYS-GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLE 484 (737)
T ss_pred eCCHH-HhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEE
Confidence 46775 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+|+.||+++++.+.+|++++||+||++ +|+|||++||++..+.+++..++.+ | .+++++|+++.
T Consensus 485 vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v-~d~pGFi~NRi~~~~~~ea~~lv~e-G-------v~~~~ID~a~~ 550 (737)
T TIGR02441 485 IITHDGTSKDTLASAVAVGLKQGKVVIVV-KDGPGFYTTRCLGPMLAEVIRLLQE-G-------VDPKKLDKLTT 550 (737)
T ss_pred EeCCCCCCHHHHHHHHHHHHHCCCeEEEE-CCcCCchHHHHHHHHHHHHHHHHHc-C-------CCHHHHHHHHH
Confidence 99999999999999999999999999999 8999999999999999997766654 5 57999998854
No 9
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.3e-37 Score=310.19 Aligned_cols=145 Identities=24% Similarity=0.312 Sum_probs=135.4
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+ +++++||+|||||+|++++|+++|++|+++|+|||||+||||+||+++|++.+++|+||+|+|||||++.|++||
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVE 462 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVE 462 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEE
Confidence 4677 468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+|+.||+++++.+.+|++++||+||+| +|+|||++||++..+.++...++. .| .+++++|+++.
T Consensus 463 vv~g~~T~~~~~~~~~~~~~~lgk~pv~v-~d~pGfv~nRi~~~~~~ea~~lv~-~G-------a~~e~ID~a~~ 528 (715)
T PRK11730 463 VIRGEKTSDETIATVVAYASKMGKTPIVV-NDCPGFFVNRVLFPYFAGFSQLLR-DG-------ADFRQIDKVME 528 (715)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCceEEe-cCcCchhHHHHHHHHHHHHHHHHH-cC-------CCHHHHHHHHH
Confidence 99999999999999999999999999999 799999999999999888655554 44 57888888875
No 10
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=4.6e-37 Score=305.70 Aligned_cols=145 Identities=30% Similarity=0.371 Sum_probs=136.2
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|++ ++++||+|||||+|++++|+++|++|+++|++||||+||||++|+++|++.+.+|+||+|+|||||++.||+||
T Consensus 376 ~~~~~-~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVE 454 (699)
T TIGR02440 376 TTDYR-GFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVE 454 (699)
T ss_pred eCChH-HhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEE
Confidence 46775 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+|+.|++++++.+.+|++++||+||++ +|+|||++||++..+.++...++. .| .+++++|+++.
T Consensus 455 vv~g~~T~~~~~~~~~~~~~~~gk~pv~v-~d~pGfi~nRl~~~~~~Ea~~l~~-~G-------~~~~dID~a~~ 520 (699)
T TIGR02440 455 VIPHAGTSEQTIATTVALAKKQGKTPIVV-ADKAGFYVNRILAPYMNEAARLLL-EG-------EPVEHIDKALV 520 (699)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEE-ccccchHHHHHHHHHHHHHHHHHH-CC-------CCHHHHHHHHH
Confidence 99999999999999999999999999999 799999999999999999766665 45 47899998874
No 11
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=1.6e-36 Score=290.96 Aligned_cols=146 Identities=22% Similarity=0.274 Sum_probs=135.9
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|++ ++++||+|||||+|++++|+++|+++++.|++++||+||||++++++|++.+.+|+|++|+|||||++.|+|+|
T Consensus 76 ~~~~~-~l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvE 154 (503)
T TIGR02279 76 VTDLH-ALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVE 154 (503)
T ss_pred eCCHH-HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEE
Confidence 35775 57899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
|++|++|++++++.+..+++++||.|+.+ +|+|||++||++..+.++...++.+.| .++++++++++
T Consensus 155 vv~g~~Ts~e~~~~~~~l~~~lgk~pv~v-~d~pGfi~Nrl~~~~~~EA~~l~e~g~-------a~~~~ID~al~ 221 (503)
T TIGR02279 155 VVSGLATAAEVAEQLYETALAWGKQPVHC-HSTPGFIVNRVARPYYAEALRALEEQV-------AAPAVLDAALR 221 (503)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeeeEe-CCCCCcHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHH
Confidence 99999999999999999999999999999 799999999999988888766666554 67888888875
No 12
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1e-35 Score=269.95 Aligned_cols=168 Identities=26% Similarity=0.444 Sum_probs=156.8
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||.+||..++..|++|.+||++++.++++.+++++.++.+.+.|.. .....++|+++++++++++
T Consensus 11 aVIG---aG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~i~~~~~l~~av~ 82 (321)
T PRK07066 11 AAIG---SGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLA-----PGASPARLRFVATIEACVA 82 (321)
T ss_pred EEEC---cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-----hhhHHhhceecCCHHHHhc
Confidence 4554 7999999999999999999999999999999999999999888876633 2345578999999999999
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCH
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSE 274 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~ 274 (290)
+||+||||+||++++|+.+|+++++.+++++||+||||+++++++++.+.+|+||+|+||||||+++|+|||++|++|++
T Consensus 83 ~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~ 162 (321)
T PRK07066 83 DADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAP 162 (321)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q psy17416 275 RVITRTREIMTEIGMK 290 (290)
Q Consensus 275 e~~~~~~~~~~~lgk~ 290 (290)
++++++.+|++.+||+
T Consensus 163 e~~~~~~~f~~~lGk~ 178 (321)
T PRK07066 163 EAVDAAMGIYRALGMR 178 (321)
T ss_pred HHHHHHHHHHHHcCCE
Confidence 9999999999999984
No 13
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=7.9e-37 Score=304.60 Aligned_cols=145 Identities=28% Similarity=0.315 Sum_probs=136.1
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+ +++++||+|||||+|++++|+++|++|+++|+|||||+||||+||+++|++.+++|+||+|+|||||++.||+||
T Consensus 381 ~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVE 459 (708)
T PRK11154 381 TTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVE 459 (708)
T ss_pred eCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEE
Confidence 4677 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+|++||+++++.+.+|++++||.|+++ +|+|||++||++..+.++...++.+ | .+++++|.++.
T Consensus 460 vv~g~~Ts~~~~~~~~~~~~~~gk~pv~v-~d~pGfi~nRl~~~~~~EA~~lv~e-G-------v~~~dID~a~~ 525 (708)
T PRK11154 460 VIPHAKTSAETIATTVALAKKQGKTPIVV-RDGAGFYVNRILAPYINEAARLLLE-G-------EPIEHIDAALV 525 (708)
T ss_pred EECCCCCCHHHHHHHHHHHHHcCCceEEE-eccCcHHHHHHHHHHHHHHHHHHHc-C-------CCHHHHHHHHH
Confidence 99999999999999999999999999999 7999999999999999997766554 5 36899998875
No 14
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=2.7e-36 Score=253.73 Aligned_cols=111 Identities=35% Similarity=0.575 Sum_probs=95.5
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|++++. +||+||||++|++++|+++|++|+++|+|||||+||||++++++|++.+++|+||+|||||||++.+|+||
T Consensus 70 ~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVE 148 (180)
T PF02737_consen 70 TTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVE 148 (180)
T ss_dssp ESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEE
T ss_pred ccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEE
Confidence 47899877 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccc
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 113 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~ 113 (290)
|+++++|++++++.+.+|++++||.|+.+ +|+
T Consensus 149 vv~~~~T~~~~~~~~~~~~~~~gk~pv~v-~D~ 180 (180)
T PF02737_consen 149 VVPGPKTSPETVDRVRALLRSLGKTPVVV-KDT 180 (180)
T ss_dssp EEE-TTS-HHHHHHHHHHHHHTT-EEEEE-ES-
T ss_pred EeCCCCCCHHHHHHHHHHHHHCCCEEEEe-cCC
Confidence 99999999999999999999999999999 774
No 15
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.9e-35 Score=266.69 Aligned_cols=145 Identities=31% Similarity=0.492 Sum_probs=137.0
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEe
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIV 82 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv 82 (290)
|+++++++||+|||||+|++++|+++|++|++.++|+|||+||||++++++|++.+++|+|++|+||||||+.||+|||+
T Consensus 72 ~~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv 151 (314)
T PRK08269 72 GAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVS 151 (314)
T ss_pred chHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEe
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 83 PAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 83 ~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+|+.|++++++.+..++.++||.|+.+ +|.|||++||++..+..+...++.+.| .+++++++++.
T Consensus 152 ~g~~t~~e~~~~~~~ll~~lGk~~v~v-~d~~Gfi~nri~~~~l~EAl~l~e~g~-------~~~e~iD~a~~ 216 (314)
T PRK08269 152 PSDATDPAVVDRLAALLERIGKVPVVC-GPSPGYIVPRIQALAMNEAARMVEEGV-------ASAEDIDKAIR 216 (314)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEe-cCCCCcchHHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHH
Confidence 999999999999999999999999999 799999999999988888766666654 78999998876
No 16
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=7.1e-35 Score=262.19 Aligned_cols=146 Identities=26% Similarity=0.353 Sum_probs=136.3
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhc-CCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFM-SSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLV 79 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~-~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lv 79 (290)
++|+ +++++||+|||||+|++++|+++|+++++.| ++++|++||||++|+++++..+.+|+|++|+|||||++.++++
T Consensus 76 ~~~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv 154 (286)
T PRK07819 76 TTDL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV 154 (286)
T ss_pred eCCH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE
Confidence 4678 5689999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eEeeCCCCCHHHHHHHHHHHH-HhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 80 EIVPAAWTSERVITRTREIMT-EIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 80 Eiv~~~~t~~~~~~~~~~~~~-~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+++..|++++++.+..|+. .+||.|+.+ +|.|||++||++..+.++.+.++.+ |. .+++++|.++.
T Consensus 155 Elv~~~~T~~~~~~~~~~~~~~~lgk~pv~v-~d~pGfi~nRi~~~~~~Ea~~ll~e-Gv------~~~~dID~~~~ 223 (286)
T PRK07819 155 ELVPTLVTSEATVARAEEFASDVLGKQVVRA-QDRSGFVVNALLVPYLLSAIRMVES-GF------ATAEDIDKAMV 223 (286)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhCCCCceEe-cCCCChHHHHHHHHHHHHHHHHHHh-CC------CCHHHHHHHHH
Confidence 999999999999999999998 599999999 8999999999999999998776655 42 57999998875
No 17
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=4.6e-34 Score=284.41 Aligned_cols=167 Identities=20% Similarity=0.275 Sum_probs=159.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||.+||+.++..|++|+++|++++.++++++++++.+++++++|.++.. ..+..+++|+++++++ ++++||+|||
T Consensus 321 aG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlViE 398 (714)
T TIGR02437 321 AGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPA-KMAGVLNGITPTLSYA-GFDNVDIVVE 398 (714)
T ss_pred CchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hHHHHHhCeEEeCCHH-HhcCCCEEEE
Confidence 5999999999999999999999999999999999999999999999888763 4566789999999996 5899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.||||||++|++|++++++++.
T Consensus 399 av~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~ 478 (714)
T TIGR02437 399 AVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVV 478 (714)
T ss_pred cCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 479 ~~~~~lgk~ 487 (714)
T TIGR02437 479 AYASKMGKT 487 (714)
T ss_pred HHHHHcCCE
Confidence 999999995
No 18
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.2e-33 Score=281.93 Aligned_cols=167 Identities=23% Similarity=0.286 Sum_probs=159.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||.+||+.++..|++|+++|++++.++++.+++++.+++++++|.++.. .....+++|+++++++ ++++||+|||
T Consensus 321 aG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlViE 398 (715)
T PRK11730 321 AGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGA-KMAGVLSSIRPTLDYA-GFERVDVVVE 398 (715)
T ss_pred CchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hHHHHHhCeEEeCCHH-HhcCCCEEEe
Confidence 6999999999999999999999999999999999999999999999988663 4667789999999996 5899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.||+|||++|+.|++++++++.
T Consensus 399 av~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~ 478 (715)
T PRK11730 399 AVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVV 478 (715)
T ss_pred cccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 479 ~~~~~lgk~ 487 (715)
T PRK11730 479 AYASKMGKT 487 (715)
T ss_pred HHHHHhCCc
Confidence 999999995
No 19
>KOG2304|consensus
Probab=100.00 E-value=3.5e-35 Score=246.02 Aligned_cols=169 Identities=24% Similarity=0.348 Sum_probs=161.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCh----hhhhcccccCCchHhhcccCc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSP----EEQFGLISGTPVLRECLEDAI 197 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~----~~~~~~i~~~~~l~~~l~~aD 197 (290)
+|.||..||+..+..|++|.++|.+...+++|.+.|.+.+.+..+++..+.+... +..+++|..+++.+++++++|
T Consensus 19 aG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~~v~dad 98 (298)
T KOG2304|consen 19 AGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSDAVSDAD 98 (298)
T ss_pred ccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHHhhhhhH
Confidence 7999999999999999999999999999999999999999999998888876532 456899999999999999999
Q ss_pred EEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHH
Q psy17416 198 FIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVI 277 (290)
Q Consensus 198 lVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~ 277 (290)
+||||+.||+++|+.+|++|+..+++++|++|||||+.++.++..+.+|.||.|+|||||++.|+||||++++.|++++.
T Consensus 99 liiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVir~~~TS~eTf 178 (298)
T KOG2304|consen 99 LIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVIRTDDTSDETF 178 (298)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q psy17416 278 TRTREIMTEIGMK 290 (290)
Q Consensus 278 ~~~~~~~~~lgk~ 290 (290)
..+..|.+.+||+
T Consensus 179 ~~l~~f~k~~gKt 191 (298)
T KOG2304|consen 179 NALVDFGKAVGKT 191 (298)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999995
No 20
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=8.6e-34 Score=283.08 Aligned_cols=217 Identities=17% Similarity=0.249 Sum_probs=182.3
Q ss_pred CCCCCCCCeeeEeeCCCC-C-HHHHHHHHHHHHHhCCccEEEeccc----------------eeeEEecc----cchhHH
Q psy17416 70 VNPPYFIPLVEIVPAAWT-S-ERVITRTREIMTEIGMKPVTLTTEI----------------RGFALNRI----HGLIGQ 127 (290)
Q Consensus 70 ~~P~~~~~lvEiv~~~~t-~-~~~~~~~~~~~~~lgk~~v~v~~d~----------------~gf~~nri----~G~~g~ 127 (290)
++|++ ..++|.|....+ + ++.++.+.+.+.+|-..|.. +.-. +..-++++ +|.||.
T Consensus 271 ~~~Ap-~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a-~al~~~f~~~~~~~~~~~~~~~~~i~~v~ViGaG~MG~ 348 (737)
T TIGR02441 271 LYPAP-LKILDVVRTGYDQGPDAGYEAESKAFGELSMTFES-KALIGLFHGQTDCKKNKFGKPQRPVKTLAVLGAGLMGA 348 (737)
T ss_pred CCccH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHccCCCCCCCCCcccEEEEECCCHhHH
Confidence 35665 456666665543 3 56666655555554444331 1000 11112222 599999
Q ss_pred HHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccch
Q psy17416 128 AWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL 207 (290)
Q Consensus 128 ~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~ 207 (290)
+||..++..|++|+++|++++.++++.+++++.+++++++|.++.. .....+++|+++++++ ++++||+||||+||++
T Consensus 349 gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlViEAv~E~l 426 (737)
T TIGR02441 349 GIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSL-ERDSILSNLTPTLDYS-GFKNADMVIEAVFEDL 426 (737)
T ss_pred HHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHH-HhccCCeehhhccccH
Confidence 9999999999999999999999999999999999999999888753 4667889999999997 5899999999999999
Q ss_pred HHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHc
Q psy17416 208 QIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEI 287 (290)
Q Consensus 208 ~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~~~~~~l 287 (290)
++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.||+|||++++.|++++++++.+|++.+
T Consensus 427 ~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~l 506 (737)
T TIGR02441 427 SLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQ 506 (737)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy17416 288 GMK 290 (290)
Q Consensus 288 gk~ 290 (290)
||+
T Consensus 507 gk~ 509 (737)
T TIGR02441 507 GKV 509 (737)
T ss_pred CCe
Confidence 995
No 21
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.4e-33 Score=250.55 Aligned_cols=171 Identities=25% Similarity=0.367 Sum_probs=160.6
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||.+||..++..|++|++||++++.++++.+++++.+++++++|..... .....+++++++++++ +++
T Consensus 9 ~ViG---aG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~-~~~ 83 (286)
T PRK07819 9 GVVG---AGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTER-ERDAALARLRFTTDLG-DFA 83 (286)
T ss_pred EEEc---ccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChh-hHHHHHhCeEeeCCHH-HhC
Confidence 4555 7999999999999999999999999999999999999999999999888664 4566789999999996 589
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhC-CCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFM-SSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTS 273 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~-~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~ 273 (290)
+||+||||+||++++|+.+|+++++.+ ++++|++||||++++++++....+|+||+|+|||+|++.++++||++++.|+
T Consensus 84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~ 163 (286)
T PRK07819 84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTS 163 (286)
T ss_pred CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCC
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HcCCC
Q psy17416 274 ERVITRTREIMT-EIGMK 290 (290)
Q Consensus 274 ~e~~~~~~~~~~-~lgk~ 290 (290)
+++++++.+|++ .+||+
T Consensus 164 ~~~~~~~~~~~~~~lgk~ 181 (286)
T PRK07819 164 EATVARAEEFASDVLGKQ 181 (286)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999988 59985
No 22
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=7e-33 Score=251.91 Aligned_cols=165 Identities=31% Similarity=0.487 Sum_probs=154.3
Q ss_pred hHHHHHHHHHHcCceeEEecCCHH-------HHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCc--hHhhccc
Q psy17416 125 IGQAWAMIFASAGYKVSLYDVLSE-------QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV--LRECLED 195 (290)
Q Consensus 125 ~g~~ia~~~~~~G~~V~l~d~~~e-------~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~--l~~~l~~ 195 (290)
||.+||..++.+|++|+++|++++ .++++.+++++.+++++++|.++.. .....+++|+++++ +.+++++
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~~~a~~~ 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAA-QADAVLARIAVVARDGAADALAD 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChh-hHHHHHhCeEeecCcchHHHhcc
Confidence 789999999999999999999995 4788999999999999999888764 45667899998765 6678899
Q ss_pred CcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHH
Q psy17416 196 AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSER 275 (290)
Q Consensus 196 aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e 275 (290)
||+||||+||++++|+.+|+++++.+++++||+||||+++++++++.+.+|+|++|+||||||+.+|+|||++++.|+++
T Consensus 80 aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e 159 (314)
T PRK08269 80 ADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPA 159 (314)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q psy17416 276 VITRTREIMTEIGMK 290 (290)
Q Consensus 276 ~~~~~~~~~~~lgk~ 290 (290)
+++++.+|++.+||+
T Consensus 160 ~~~~~~~ll~~lGk~ 174 (314)
T PRK08269 160 VVDRLAALLERIGKV 174 (314)
T ss_pred HHHHHHHHHHHcCCc
Confidence 999999999999985
No 23
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=3.5e-33 Score=277.92 Aligned_cols=167 Identities=29% Similarity=0.373 Sum_probs=157.9
Q ss_pred cchhHHHHHHHHH-HcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFA-SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~-~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.||.+||..++ ..|++|+++|.+++.++++..++++.+++++++|.++.. .....+.+|+++++++ ++++||+||
T Consensus 312 aG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~adlVi 389 (699)
T TIGR02440 312 GGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPA-ERDNQMALITGTTDYR-GFKDVDIVI 389 (699)
T ss_pred CcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHcCeEEeCChH-HhccCCEEE
Confidence 6999999999998 589999999999999999999999999999998887653 3456778999999997 689999999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHH
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRT 280 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~ 280 (290)
||+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.+|+|||++|++|++++++++
T Consensus 390 Eav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~ 469 (699)
T TIGR02440 390 EAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATT 469 (699)
T ss_pred EeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC
Q psy17416 281 REIMTEIGMK 290 (290)
Q Consensus 281 ~~~~~~lgk~ 290 (290)
.+|++.+||+
T Consensus 470 ~~~~~~~gk~ 479 (699)
T TIGR02440 470 VALAKKQGKT 479 (699)
T ss_pred HHHHHHcCCe
Confidence 9999999995
No 24
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=7.7e-33 Score=276.04 Aligned_cols=167 Identities=30% Similarity=0.356 Sum_probs=158.7
Q ss_pred cchhHHHHHHHHH-HcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFA-SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~-~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.||.+||..++ ..|++|+++|.+++.++++.+++++.+++++++|.++.. .....+++|+++++++ ++++||+||
T Consensus 317 aG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlVi 394 (708)
T PRK11154 317 GGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPS-ERDKQMALISGTTDYR-GFKHADVVI 394 (708)
T ss_pred CchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhcEEEeCChH-HhccCCEEe
Confidence 6999999999999 889999999999999999999999999999998887653 3566789999999996 689999999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHH
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRT 280 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~ 280 (290)
||+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.+|+|||++|++|++++++++
T Consensus 395 Eav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~ 474 (708)
T PRK11154 395 EAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATT 474 (708)
T ss_pred ecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC
Q psy17416 281 REIMTEIGMK 290 (290)
Q Consensus 281 ~~~~~~lgk~ 290 (290)
.+|++.+||+
T Consensus 475 ~~~~~~~gk~ 484 (708)
T PRK11154 475 VALAKKQGKT 484 (708)
T ss_pred HHHHHHcCCc
Confidence 9999999994
No 25
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.1e-32 Score=248.47 Aligned_cols=148 Identities=27% Similarity=0.354 Sum_probs=139.3
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+++++++||+||||+||++++|+++|+++++.+++++||+||||+++++++++.+.+|+||+|+|||||++.++++|
T Consensus 75 ~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lve 154 (287)
T PRK08293 75 TTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAE 154 (287)
T ss_pred eCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
|++++.|++++++.+.+|++.+||+|+.+++|.|||++||++..+.+++..++.. |. .+++++|++++
T Consensus 155 vv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~-g~------a~~~~iD~a~~ 222 (287)
T PRK08293 155 IMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAK-GV------ADPETIDKTWM 222 (287)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHc-CC------CCHHHHHHHHH
Confidence 9999999999999999999999999999977999999999999999997776655 42 67999998875
No 26
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.98 E-value=1.9e-31 Score=256.02 Aligned_cols=172 Identities=26% Similarity=0.319 Sum_probs=161.5
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..||+.++..|++|++||++++.++++.+++++.+++++++|.++.. .....+++++.++++++ +
T Consensus 8 V~VIG---aG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~-l 82 (503)
T TIGR02279 8 VAVIG---AGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAE-ECERTLKRLIPVTDLHA-L 82 (503)
T ss_pred EEEEC---cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHhccEEeCCHHH-h
Confidence 35565 7999999999999999999999999999999999999999999998887653 45677899999999975 7
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTS 273 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~ 273 (290)
++||+||||+||++++|+.+|+++++.+++++||+||||+++++++++.+.+|.|++|+|||+|++.++|+||++|++|+
T Consensus 83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts 162 (503)
T TIGR02279 83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATA 162 (503)
T ss_pred CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy17416 274 ERVITRTREIMTEIGMK 290 (290)
Q Consensus 274 ~e~~~~~~~~~~~lgk~ 290 (290)
+++++++.+|++.+||+
T Consensus 163 ~e~~~~~~~l~~~lgk~ 179 (503)
T TIGR02279 163 AEVAEQLYETALAWGKQ 179 (503)
T ss_pred HHHHHHHHHHHHHcCCe
Confidence 99999999999999984
No 27
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.97 E-value=5e-31 Score=253.74 Aligned_cols=172 Identities=23% Similarity=0.322 Sum_probs=162.3
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..||..++..|++|++||++++.++++.+++++.+++++++|.++.. ..+..+++++.++++++ +
T Consensus 10 V~VIG---aG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~-~ 84 (507)
T PRK08268 10 VAVIG---AGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAE-QADAALARLRPVEALAD-L 84 (507)
T ss_pred EEEEC---CCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHHH-h
Confidence 45665 7999999999999999999999999999999999999999999999887763 46678899999999975 7
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTS 273 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~ 273 (290)
++||+||||+||+.++|+.+|++++..+++++|++||||++++++++..+.+|+||+|+|||+|++.++|+||++|++|+
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts 164 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATD 164 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy17416 274 ERVITRTREIMTEIGMK 290 (290)
Q Consensus 274 ~e~~~~~~~~~~~lgk~ 290 (290)
+++++++.+|++.+||+
T Consensus 165 ~~~~~~~~~l~~~lgk~ 181 (507)
T PRK08268 165 PAVADALYALARAWGKT 181 (507)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 99999999999999985
No 28
>KOG2305|consensus
Probab=99.97 E-value=5.2e-31 Score=221.15 Aligned_cols=168 Identities=51% Similarity=0.883 Sum_probs=164.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|..|++||+.+++.||+|.+||+.++++..|++.+++.+.++.+.|.++|.++.++++..|+.++++++++++|=++.|
T Consensus 11 Sgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~Ai~iQE 90 (313)
T KOG2305|consen 11 SGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKGAIHIQE 90 (313)
T ss_pred cccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhhhhhHHh
Confidence 58889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+||+++.|+.+|++|++.+.+.+|++|+||++.++.+.+.+.++++++..||.|||++.||||++|.|.|+++++++..
T Consensus 91 cvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwTsp~tVdrt~ 170 (313)
T KOG2305|consen 91 CVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWTSPDTVDRTR 170 (313)
T ss_pred hchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCC
Q psy17416 282 EIMTEIGM 289 (290)
Q Consensus 282 ~~~~~lgk 289 (290)
++++.+|.
T Consensus 171 ~lM~sigq 178 (313)
T KOG2305|consen 171 ALMRSIGQ 178 (313)
T ss_pred HHHHHhCC
Confidence 99999995
No 29
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.97 E-value=1.4e-29 Score=228.15 Aligned_cols=169 Identities=27% Similarity=0.369 Sum_probs=155.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||.++|..++..|++|.+||++++.++++.+.+++.++.+.+.+............++++.++++++++++||+|||
T Consensus 11 aG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDlVie 90 (287)
T PRK08293 11 AGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVKDADLVIE 90 (287)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhcCCCEEEE
Confidence 79999999999999999999999999999999999988888887766554321134456889899999988999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+||+++.|+.+++++.+.+++++||+||||+++++++++.+.+|.||+|+|||+|++.++++||++++.|++++++++.
T Consensus 91 avpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t~~~~~~~~~ 170 (287)
T PRK08293 91 AVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVV 170 (287)
T ss_pred eccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 171 ~~~~~~Gk~ 179 (287)
T PRK08293 171 AFAKAIGMV 179 (287)
T ss_pred HHHHHcCCe
Confidence 999999984
No 30
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.97 E-value=2.8e-30 Score=233.20 Aligned_cols=145 Identities=30% Similarity=0.409 Sum_probs=135.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|+ +++++||+||||++|+.++|+++|+++++.+++++|++||||+++++++++.+.+|+|++|+|||+|++.++++|+
T Consensus 78 ~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv 156 (291)
T PRK06035 78 TSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEV 156 (291)
T ss_pred CCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEE
Confidence 456 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
++|+.|++++++.+.++++.+||.|+.+ +|.|||++||++..+.++...++.+ |. .+++++|+++.
T Consensus 157 ~~g~~T~~e~~~~~~~~~~~lgk~~v~v-~d~pgfv~nRl~~~~~~ea~~~~~~-g~------a~~~~iD~~~~ 222 (291)
T PRK06035 157 VRAALTSEETFNTTVELSKKIGKIPIEV-ADVPGFFTTRFIEGWLLEAIRSFEI-GI------ATIKDIDEMCK 222 (291)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEe-CCCCCeeHHHHHHHHHHHHHHHHHc-CC------CCHHHHHHHHh
Confidence 9999999999999999999999999999 7999999999999999887666544 52 67999999875
No 31
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.97 E-value=5.4e-30 Score=230.35 Aligned_cols=145 Identities=26% Similarity=0.363 Sum_probs=135.9
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|++ ++++||+||||++|++++|+++|++|++.+++++|++||||++++++|++.+++|+|++|+||++|++.++++|+
T Consensus 75 ~~~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev 153 (282)
T PRK05808 75 TDLD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEI 153 (282)
T ss_pred CCHH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEE
Confidence 5665 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
++|+.|++++++.+.++++.+||.|+.+ +|+|||++||++..+.++.+.++.+ |. .+++++|.++.
T Consensus 154 ~~g~~t~~e~~~~~~~l~~~lGk~pv~~-~d~~g~i~~Ri~~~~~~ea~~~~~~-gv------~~~~diD~~~~ 219 (282)
T PRK05808 154 IRGLATSDATHEAVEALAKKIGKTPVEV-KNAPGFVVNRILIPMINEAIFVLAE-GV------ATAEDIDEGMK 219 (282)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeeEEe-cCccChHHHHHHHHHHHHHHHHHHh-CC------CCHHHHHHHHH
Confidence 9999999999999999999999999999 8999999999999999997776655 42 56999998886
No 32
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.97 E-value=6.6e-30 Score=230.47 Aligned_cols=147 Identities=25% Similarity=0.441 Sum_probs=137.6
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+++++++||+||||+||+.++|+++|+++++.+++++|++||||+++++++++.+.+|+|++|+|||+|++.++++|
T Consensus 72 ~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve 151 (288)
T PRK09260 72 SLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVE 151 (288)
T ss_pred eCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEE
Confidence 36788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
++.|+.|++++++.+..+++.+||.|+.+ +|+|||++||++..+.++.+.++. .|. .+++++|.++.
T Consensus 152 ~v~g~~t~~~~~~~~~~~l~~lg~~~v~v-~d~~Gf~~nRl~~~~~~ea~~~~~-~gv------~~~~~iD~~~~ 218 (288)
T PRK09260 152 LIRGLETSDETVQVAKEVAEQMGKETVVV-NEFPGFVTSRISALVGNEAFYMLQ-EGV------ATAEDIDKAIR 218 (288)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcccHHHHHHHHHHHHHHHHHHH-cCC------CCHHHHHHHHH
Confidence 99999999999999999999999999999 799999999999999998766654 452 58999999875
No 33
>KOG1683|consensus
Probab=99.96 E-value=9.3e-30 Score=227.61 Aligned_cols=142 Identities=23% Similarity=0.277 Sum_probs=135.7
Q ss_pred hcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCCC
Q psy17416 7 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAW 86 (290)
Q Consensus 7 ~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~~ 86 (290)
.++++|+||||++||+++|+++|++||++|+++||++||||+++++++++.+++|++++|+|||+|++.|+|+||+.+.+
T Consensus 66 ~~~~~dmvieav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~ 145 (380)
T KOG1683|consen 66 GFANADMVIEAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALY 145 (380)
T ss_pred cccccceeccchhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHH
Q psy17416 87 TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 156 (290)
Q Consensus 87 t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~ 156 (290)
||.++++.+.......||.|++| ++++||.+||++..|..++...+...| .+|..+|+....
T Consensus 146 tS~~~iA~Ain~~~~~gk~~vvV-g~c~gf~v~r~l~~y~~~~~~~l~e~g-------~~p~~iD~~~t~ 207 (380)
T KOG1683|consen 146 TSKLTIATAINGGSPAGKLPVVV-GNCCGFRVNRLLPPYTIGLNELLLEIG-------ADPWLIDSLITK 207 (380)
T ss_pred CCchHHHHHHhcccccCCccEEe-ccCCceEEEecccHHHHHHHHHHHHcC-------CCHHHHHHHHHh
Confidence 99999999999999999999999 899999999999999999988888866 678888877663
No 34
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.96 E-value=8.7e-28 Score=216.67 Aligned_cols=168 Identities=24% Similarity=0.438 Sum_probs=154.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||.++|..++..|++|++||++++.++++.+++...+....+.|..+.. .......+++.++++++++++||+||+
T Consensus 9 ~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~aD~Vi~ 87 (288)
T PRK09260 9 AGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA-ARQAALARLSYSLDLKAAVADADLVIE 87 (288)
T ss_pred ccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCcHHHhhcCCCEEEE
Confidence 7999999999999999999999999999999998888777776666666542 345567788889999888999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+|++.++|+.+|+++.+.+++++++++|+|+++++++++.+.+|.|++|+|||+|++.++++|+++|++|++++++++.
T Consensus 88 avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~~~~~~~~ 167 (288)
T PRK09260 88 AVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAK 167 (288)
T ss_pred eccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 168 ~~l~~lg~~ 176 (288)
T PRK09260 168 EVAEQMGKE 176 (288)
T ss_pred HHHHHcCCe
Confidence 999999984
No 35
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.96 E-value=1.6e-28 Score=221.95 Aligned_cols=145 Identities=23% Similarity=0.285 Sum_probs=134.5
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|++ ++++||+||||+||+.++|+.+|+++++.+++++|++||||++++++|++.+.+|+|++|+|||+|++.++++|+
T Consensus 76 ~~~~-~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei 154 (292)
T PRK07530 76 TDLE-DLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVEL 154 (292)
T ss_pred CCHH-HhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEE
Confidence 5664 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+.|..|++++++.+..++..+||.|+.+ +|.|||++||++..+.++...++.+ |. .+++++|+++.
T Consensus 155 ~~g~~t~~~~~~~~~~~~~~~gk~~v~~-~d~pg~i~nRl~~~~~~ea~~~~~~-g~------~~~~~iD~~~~ 220 (292)
T PRK07530 155 IRGIATDEATFEAAKEFVTKLGKTITVA-EDFPAFIVNRILLPMINEAIYTLYE-GV------GSVEAIDTAMK 220 (292)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcCChHHHHHHHHHHHHHHHHHHh-CC------CCHHHHHHHHH
Confidence 9999999999999999999999999988 8999999999999998887665554 53 48999998875
No 36
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.96 E-value=9e-28 Score=215.92 Aligned_cols=167 Identities=26% Similarity=0.404 Sum_probs=155.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||..+|..++..|++|+++|++++.++++.+++++.++.+.+.|.++.. .......++++++++++ +++||+|||
T Consensus 11 ~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~-~~~aDlVi~ 88 (282)
T PRK05808 11 AGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA-DKEAALARITGTTDLDD-LKDADLVIE 88 (282)
T ss_pred cCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHHH-hccCCeeee
Confidence 7999999999999999999999999999999999999999999988876543 34455678888888874 899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+||++++|+++|+++++.++++++|+||||+++++.+++.+.+|.|++|+||++|++.++++||++++.|++++++++.
T Consensus 89 av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e~~~~~~ 168 (282)
T PRK05808 89 AATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVE 168 (282)
T ss_pred cccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 169 ~l~~~lGk~ 177 (282)
T PRK05808 169 ALAKKIGKT 177 (282)
T ss_pred HHHHHcCCe
Confidence 999999984
No 37
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.96 E-value=2e-27 Score=214.68 Aligned_cols=167 Identities=32% Similarity=0.488 Sum_probs=149.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHH---HHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHT---LQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~---~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
+|.||..+|..++..|++|++||++++.++++.+++++. ++.+++.|..... .......++..+++++ ++++||+
T Consensus 11 aG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDl 88 (291)
T PRK06035 11 SGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSED-EAKAIMARIRTSTSYE-SLSDADF 88 (291)
T ss_pred ccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHH-HHHHHHhCcEeeCCHH-HhCCCCE
Confidence 799999999999999999999999999999988877763 5555666655331 2345567788888885 6899999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHH
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVIT 278 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~ 278 (290)
||||+|++.++|+.+|+++++.+++++|++||||+++++++++.+.+|+||+|+|||+|++.++++|+++++.|++++++
T Consensus 89 Vieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~T~~e~~~ 168 (291)
T PRK06035 89 IVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFN 168 (291)
T ss_pred EEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q psy17416 279 RTREIMTEIGMK 290 (290)
Q Consensus 279 ~~~~~~~~lgk~ 290 (290)
++.+|++.+||+
T Consensus 169 ~~~~~~~~lgk~ 180 (291)
T PRK06035 169 TTVELSKKIGKI 180 (291)
T ss_pred HHHHHHHHcCCe
Confidence 999999999984
No 38
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.95 E-value=2.4e-27 Score=214.18 Aligned_cols=171 Identities=26% Similarity=0.358 Sum_probs=155.6
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
++++ +|.||..+|..++..|++|.+||++++.++++.+++++.++.+.+.|.+... .......+++++++++ +++
T Consensus 8 ~vIG---aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~ 82 (292)
T PRK07530 8 GVIG---AGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEE-ARAAALARISTATDLE-DLA 82 (292)
T ss_pred EEEC---CcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEeeCCHH-Hhc
Confidence 4454 7999999999999999999999999999999999999998888877766542 2344567888888886 589
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCH
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSE 274 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~ 274 (290)
+||+||||+||+.++|+.+|+++.+.++++++|+||||+++++++++.+.+|.|++|+|||+|++.++++|++++..|++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~ 162 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE 162 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q psy17416 275 RVITRTREIMTEIGMK 290 (290)
Q Consensus 275 e~~~~~~~~~~~lgk~ 290 (290)
++++++.+|++.+||+
T Consensus 163 ~~~~~~~~~~~~~gk~ 178 (292)
T PRK07530 163 ATFEAAKEFVTKLGKT 178 (292)
T ss_pred HHHHHHHHHHHHcCCe
Confidence 9999999999999984
No 39
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.95 E-value=5e-27 Score=212.40 Aligned_cols=172 Identities=29% Similarity=0.386 Sum_probs=157.0
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||.+||..++..|++|.+||++++.++++.+++++.++++++.|.++.. ......+++.++++++ ++
T Consensus 7 V~vIG---~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~-~~ 81 (295)
T PLN02545 7 VGVVG---AGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQE-EADATLGRIRCTTNLE-EL 81 (295)
T ss_pred EEEEC---CCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhceEeeCCHH-Hh
Confidence 35565 7999999999999999999999999999999999999999999888777653 2344556777777876 58
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTS 273 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~ 273 (290)
++||+||||+||+.++|+.+|+++.+.+++++||+||||+++++++++.+.+|.|++|+||++||+.++++|+++++.|+
T Consensus 82 ~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~ 161 (295)
T PLN02545 82 RDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTS 161 (295)
T ss_pred CCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy17416 274 ERVITRTREIMTEIGMK 290 (290)
Q Consensus 274 ~e~~~~~~~~~~~lgk~ 290 (290)
+++++++.+|++.+||+
T Consensus 162 ~e~~~~~~~ll~~lG~~ 178 (295)
T PLN02545 162 DEVFDATKALAERFGKT 178 (295)
T ss_pred HHHHHHHHHHHHHcCCe
Confidence 99999999999999984
No 40
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.95 E-value=1.3e-27 Score=216.25 Aligned_cols=145 Identities=30% Similarity=0.373 Sum_probs=134.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+++ +++++||+|||||+|+.++|+.+|+++++.+++++||+||||+++++++++.+.+|.|++|+||+|||+.++++|+
T Consensus 76 ~~~-~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lvei 154 (295)
T PLN02545 76 TNL-EELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEI 154 (295)
T ss_pred CCH-HHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEE
Confidence 345 4689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+.++.|++++++.+..++..+||.++.+ +|+|||++||++..+.++.+.++.+ |. .+++++|.++.
T Consensus 155 v~g~~t~~e~~~~~~~ll~~lG~~~~~~-~d~~g~i~nri~~~~~~ea~~~~~~-gv------~~~~~iD~~~~ 220 (295)
T PLN02545 155 IRGADTSDEVFDATKALAERFGKTVVCS-QDYPGFIVNRILMPMINEAFYALYT-GV------ASKEDIDTGMK 220 (295)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeeEEe-cCcccHHHHHHHHHHHHHHHHHHHc-CC------CCHHHHHHHHH
Confidence 9999999999999999999999999988 8999999999999998887776655 42 67999998775
No 41
>KOG2305|consensus
Probab=99.94 E-value=7.9e-28 Score=202.03 Aligned_cols=143 Identities=50% Similarity=0.730 Sum_probs=134.5
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
|++|+|.+++|=.+.|||||++++|+++|++||+++.|.||++|.||++..+.+.+.+.+.++++..|+.|||++.||||
T Consensus 75 t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvE 154 (313)
T KOG2305|consen 75 TTSLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVE 154 (313)
T ss_pred CccHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchhe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEe
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLY 143 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~ 143 (290)
+|+.|.|+++++++..++.+.+|..||..+++.-||.+||+...+...-..+.+.++..|.-+
T Consensus 155 lVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dv 217 (313)
T KOG2305|consen 155 LVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDV 217 (313)
T ss_pred eccCCCCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhH
Confidence 999999999999999999999999999999999999999999888887777777766554433
No 42
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.94 E-value=8.2e-27 Score=224.59 Aligned_cols=148 Identities=39% Similarity=0.577 Sum_probs=136.3
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+++++++||+||||+||++++|+++|+++++.+++++||+||||+++++++++.+.+|+|+++.|||||++.++++|
T Consensus 71 ~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lve 150 (495)
T PRK07531 71 CASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVE 150 (495)
T ss_pred eCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEE
Confidence 36888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+++|+.|++++++.+..|+..+||.|+.+.++.+||++||++..+.+++..+..+.| .+++++++++.
T Consensus 151 vv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~-------~s~~~id~~~~ 218 (495)
T PRK07531 151 LVGGGKTSPETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGI-------ATTEEIDDVIR 218 (495)
T ss_pred EcCCCCCCHHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHh
Confidence 999999999999999999999999999998899999999999887666555555555 67777777665
No 43
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.94 E-value=8.9e-26 Score=205.43 Aligned_cols=172 Identities=37% Similarity=0.649 Sum_probs=158.9
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||.++|..++..|++|++||++++.++++.++++..++.+.+.|..++. .....+++++.++++.++++
T Consensus 6 ~VIG---~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~-~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 6 AIIG---AGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGE-APDAVLARIRVTDSLADAVA 81 (308)
T ss_pred EEEC---ccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchh-hHHHHhcCeEEECcHHHhhC
Confidence 4555 7999999999999999999999999999999999999999888888877653 34566778888999998899
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCH
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSE 274 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~ 274 (290)
+||+||+|+|++.++|+.+++++.+.+++++++.||||++.++++++.+.++.|+++.|||+|++.++++||++++.|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~ 161 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP 161 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q psy17416 275 RVITRTREIMTEIGMK 290 (290)
Q Consensus 275 e~~~~~~~~~~~lgk~ 290 (290)
++++++.+|++.+||+
T Consensus 162 ~~~~~~~~~~~~lG~~ 177 (308)
T PRK06129 162 ATLARAEALYRAAGQS 177 (308)
T ss_pred HHHHHHHHHHHHcCCE
Confidence 9999999999999984
No 44
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.94 E-value=6.3e-26 Score=206.41 Aligned_cols=148 Identities=37% Similarity=0.660 Sum_probs=137.9
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+++++++||+|+||+||+.++|+.+|+++++.++++++++||||+++++++++.+.+|.|++|.||+||++.++++|
T Consensus 73 ~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lve 152 (308)
T PRK06129 73 TDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVE 152 (308)
T ss_pred ECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEE
Confidence 36888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
++++..|++++++.+..|++.+||+|+.+.++.+||++||++..+.+++..+..+.| .+++++++++.
T Consensus 153 iv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~-------~~~~~id~~~~ 220 (308)
T PRK06129 153 VVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGV-------ASVDDIDAVIR 220 (308)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHH
Confidence 999999999999999999999999999997799999999998887777666555555 78999998886
No 45
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.93 E-value=1e-24 Score=210.03 Aligned_cols=169 Identities=38% Similarity=0.561 Sum_probs=144.3
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|||+ +|.||.+||..+++.|++|.+||++++.+++..+.+++...... .+.. ......+++++++++++++
T Consensus 7 IavIG---~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~---~l~~--~~~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 7 AACIG---GGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYA---MLTD--APLPPEGRLTFCASLAEAV 78 (495)
T ss_pred EEEEC---cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHh---hhcc--chhhhhhceEeeCCHHHHh
Confidence 46676 89999999999999999999999999988765443333322211 1111 0112235678889998889
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTS 273 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~ 273 (290)
++||+||||+||+.++|+.+|+++++.+++++||.||||+++++.+++.+.+|.|+++.|||||++.++++||++|+.|+
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy17416 274 ERVITRTREIMTEIGMK 290 (290)
Q Consensus 274 ~e~~~~~~~~~~~lgk~ 290 (290)
+++++++.+|++.+||+
T Consensus 159 ~e~~~~~~~~~~~lG~~ 175 (495)
T PRK07531 159 PETIRRAKEILREIGMK 175 (495)
T ss_pred HHHHHHHHHHHHHcCCE
Confidence 99999999999999984
No 46
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.92 E-value=3.6e-24 Score=195.13 Aligned_cols=147 Identities=27% Similarity=0.438 Sum_probs=135.7
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|+++++++||+||+|++|+.+.|+++|++++..+++++|++||||+++++++++.+.+|+|++|+||++|+..++++|+
T Consensus 71 ~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i 150 (311)
T PRK06130 71 AGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEV 150 (311)
T ss_pred CCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEE
Confidence 57778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+.++.|++++++.+.+++..+|+.++.+.++.|||++||++..+..+...++.+.| .+++++++++.
T Consensus 151 ~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~-------~~~~~id~~~~ 217 (311)
T PRK06130 151 VRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGV-------ASAEDIDEVVK 217 (311)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHH
Confidence 99999999999999999999999999996799999999998877777655555554 68999998885
No 47
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.90 E-value=2.6e-22 Score=182.86 Aligned_cols=167 Identities=28% Similarity=0.444 Sum_probs=145.1
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||.++|..+++.|++|+++|++++.++++.+.+.+......+.+. ......+++.+++++++++
T Consensus 8 ~vIG---aG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~ 78 (311)
T PRK06130 8 AIIG---AGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI------ASAGMGRIRMEAGLAAAVS 78 (311)
T ss_pred EEEC---CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc------HHHHhhceEEeCCHHHHhc
Confidence 5565 799999999999999999999999999998888776655443222111 1123456677788888889
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCH
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSE 274 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~ 274 (290)
+||+||+|+|++.+.|+.+++++.+.++++++|+|+||+++++++++.+.++.||+|+||++|++.++++|+++++.|++
T Consensus 79 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~~ 158 (311)
T PRK06130 79 GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSP 158 (311)
T ss_pred cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q psy17416 275 RVITRTREIMTEIGMK 290 (290)
Q Consensus 275 e~~~~~~~~~~~lgk~ 290 (290)
++++++.+|++.+|++
T Consensus 159 ~~~~~v~~l~~~~G~~ 174 (311)
T PRK06130 159 QTVATTMALLRSIGKR 174 (311)
T ss_pred HHHHHHHHHHHHcCCE
Confidence 9999999999999984
No 48
>KOG1683|consensus
Probab=99.88 E-value=3e-23 Score=185.95 Aligned_cols=163 Identities=23% Similarity=0.296 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccc
Q psy17416 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVP 204 (290)
Q Consensus 125 ~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavp 204 (290)
||+.||..+...|+++++.|.+...++++..++...+...+.++.+.+ ........++..+.|..+ ++++|+|||++.
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~-~~~~~~~~~L~~~~Dy~~-~~~~dmvieav~ 78 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSG-LEREKTKSNLVETLDYTG-FANADMVIEAVF 78 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccc-cchhhhhhhccccccccc-ccccceeccchh
Confidence 789999999999999999999999999999999999988888887776 355667778888888885 899999999999
Q ss_pred cchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHHHHH
Q psy17416 205 EILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIM 284 (290)
Q Consensus 205 e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~~~~ 284 (290)
|++++|++++++|+++++++||++||||++++.++++.+.+|++++|+|||+|.+.|+|+||+.+..|+..++..+.+..
T Consensus 79 edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~ 158 (380)
T KOG1683|consen 79 EDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGG 158 (380)
T ss_pred hhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCC
Q psy17416 285 TEIGM 289 (290)
Q Consensus 285 ~~lgk 289 (290)
...||
T Consensus 159 ~~~gk 163 (380)
T KOG1683|consen 159 SPAGK 163 (380)
T ss_pred cccCC
Confidence 88887
No 49
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.54 E-value=1.8e-13 Score=122.90 Aligned_cols=146 Identities=18% Similarity=0.220 Sum_probs=114.6
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ .|.||.+++..+...|++|.+||++++.++++.+ .|.... .+++.+ .++
T Consensus 4 ~IIG---~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~-----------~g~~~~------------~~~~~~-~~~ 56 (279)
T PRK07417 4 GIVG---LGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE-----------RGLVDE------------ASTDLS-LLK 56 (279)
T ss_pred EEEe---ecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------CCCccc------------ccCCHh-Hhc
Confidence 4555 7999999999999999999999999988777654 222211 234444 578
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCC------------CCCC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPP------------YFIP 262 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~------------~~~~ 262 (290)
+||+||+|+|.+.. .++++++.+.+++++++ ++++|.+.+.+......+.+|+++||+..+ +..+
T Consensus 57 ~aDlVilavp~~~~--~~~~~~l~~~l~~~~ii-~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~ 133 (279)
T PRK07417 57 DCDLVILALPIGLL--LPPSEQLIPALPPEAIV-TDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNR 133 (279)
T ss_pred CCCEEEEcCCHHHH--HHHHHHHHHhCCCCcEE-EeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCC
Confidence 99999999997764 57889999999999877 677777777666555555689999997654 2456
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
.+-++|++.++++.++.+.+|++.+|++
T Consensus 134 ~~~l~p~~~~~~~~~~~v~~l~~~lG~~ 161 (279)
T PRK07417 134 PWVLTPTENTDLNALAIVEELAVSLGSK 161 (279)
T ss_pred cEEEccCCCCCHHHHHHHHHHHHHcCCE
Confidence 6779999999999999999999999973
No 50
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.37 E-value=4.2e-12 Score=118.57 Aligned_cols=126 Identities=20% Similarity=0.236 Sum_probs=100.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||.++|..+...|++|.+||+++. ++.++++++||+||+
T Consensus 107 ~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------------------------~~~~~~~~~aDlVil 148 (374)
T PRK11199 107 KGQLGRLFAKMLTLSGYQVRILEQDDW--------------------------------------DRAEDILADAGMVIV 148 (374)
T ss_pred CChhhHHHHHHHHHCCCeEEEeCCCcc--------------------------------------hhHHHHHhcCCEEEE
Confidence 599999999999999999999998531 122345779999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCCCCcEEEeccCCCCCCCCeEE--EecCCCCCHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE--IVPAAWTSERVI 277 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvE--vv~~~~t~~e~~ 277 (290)
|+|++. ..++++++.+ ++++++++..+|. ..+..+..... .+|+|.||+.++....+.. ++..+.++++.+
T Consensus 149 avP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~ 223 (374)
T PRK11199 149 SVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAY 223 (374)
T ss_pred eCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHH
Confidence 999776 6789999998 8999999866654 44667765543 3699999999886655443 566778899999
Q ss_pred HHHHHHHHHcCCC
Q psy17416 278 TRTREIMTEIGMK 290 (290)
Q Consensus 278 ~~~~~~~~~lgk~ 290 (290)
+++.+||+.+|.+
T Consensus 224 ~~~~~l~~~lG~~ 236 (374)
T PRK11199 224 QWLLEQIQVWGAR 236 (374)
T ss_pred HHHHHHHHHCCCE
Confidence 9999999999963
No 51
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.36 E-value=1.4e-11 Score=114.43 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=109.4
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ .|.||.++|..+.+.|++|.+|+++++....... ...|..+ ..+++++++++
T Consensus 4 ~iIG---~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~------------~~~~~~~~~~~ 59 (359)
T PRK06545 4 LIVG---LGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID------------ELAADLQRAAA 59 (359)
T ss_pred EEEE---eCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc------------ccccCHHHHhc
Confidence 5565 7999999999999999999999988765433221 0112111 12467777889
Q ss_pred cCcEEEEccccchHHHHHHHHHHhh-hCCCCcEEEeCCCCcC---HHHHhccCCCCCcEEEeccCCCC------------
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDI-FMSSNTILSSSTSSFL---PSVLSEHSTHRSQFIVAHPVNPP------------ 258 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~-~~~~~~ii~s~ts~~~---~~~la~~~~~~~r~ig~Hf~~p~------------ 258 (290)
+||+||.|+|.+ ...++++++.+ .++++++++ +.+|.+ +..+........+|+|.||+...
T Consensus 60 ~aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivt-Dv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~l 136 (359)
T PRK06545 60 EADLIVLAVPVD--ATAALLAELADLELKPGVIVT-DVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADL 136 (359)
T ss_pred CCCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEE-eCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHH
Confidence 999999999975 47899999987 478888775 344443 34455444566799999986543
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 259 YFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 259 ~~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
+.....-|++++.++++.++.+.++++.+|++
T Consensus 137 f~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~ 168 (359)
T PRK06545 137 FENAPWVLTPDDHTDPDAVAELKDLLSGTGAK 168 (359)
T ss_pred HCCCcEEEecCCCCCHHHHHHHHHHHHHcCCE
Confidence 23444568999999999999999999999963
No 52
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.34 E-value=3.6e-11 Score=107.48 Aligned_cols=143 Identities=18% Similarity=0.299 Sum_probs=107.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCC--HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch-HhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVL--SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL-RECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~--~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l-~~~l~~aDl 198 (290)
.|.||+++|..+...|+.|.+++++ ...+..+.+ .|..+.. +.+. .+++.++|+
T Consensus 11 ~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~-----------lgv~d~~------------~~~~~~~~~~~aD~ 67 (279)
T COG0287 11 LGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE-----------LGVIDEL------------TVAGLAEAAAEADL 67 (279)
T ss_pred CchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh-----------cCccccc------------ccchhhhhcccCCE
Confidence 7999999999999999988665544 444444443 3333321 2232 456788999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHHhccCCCCCcEEEeccCCCC------CCCCeEEEecCC
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHSTHRSQFIVAHPVNPP------YFIPLVEIVPAA 270 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~------~~~~lvEvv~~~ 270 (290)
||.||| ...--++++++.+.++++++++ +++++-.++.+....+...+|+|.||+..+ +....+-++|++
T Consensus 68 VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~ 145 (279)
T COG0287 68 VIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSE 145 (279)
T ss_pred EEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCC
Confidence 999999 5557799999999999999997 444555555555554332289999997766 345688899999
Q ss_pred CCCHHHHHHHHHHHHHcCC
Q psy17416 271 WTSERVITRTREIMTEIGM 289 (290)
Q Consensus 271 ~t~~e~~~~~~~~~~~lgk 289 (290)
.++.+.++.+..+|+.+|-
T Consensus 146 ~~~~~~~~~~~~~~~~~ga 164 (279)
T COG0287 146 GTEKEWVEEVKRLWEALGA 164 (279)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999884
No 53
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.31 E-value=3.8e-11 Score=106.70 Aligned_cols=135 Identities=21% Similarity=0.296 Sum_probs=100.3
Q ss_pred HHHHHHHcC--ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccc
Q psy17416 129 WAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEI 206 (290)
Q Consensus 129 ia~~~~~~G--~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~ 206 (290)
+|..+.+.| +.|..+|++++.++++.+ .|..+.. ..+ .+++.++|+||.|+|
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~-----------~g~~~~~------------~~~-~~~~~~~DlvvlavP-- 54 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE-----------LGIIDEA------------STD-IEAVEDADLVVLAVP-- 54 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH-----------TTSSSEE------------ESH-HHHGGCCSEEEE-S---
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH-----------CCCeeec------------cCC-HhHhcCCCEEEEcCC--
Confidence 356677777 789999999999888876 4554431 233 446899999999999
Q ss_pred hHHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHHhccCCCCCcEEEeccCCCC------------CCCCeEEEecCCCC
Q psy17416 207 LQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHSTHRSQFIVAHPVNPP------------YFIPLVEIVPAAWT 272 (290)
Q Consensus 207 ~~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~------------~~~~lvEvv~~~~t 272 (290)
...-..+++++.+.++++++++ ++++.-.+..+........+|+|.||+..+ +..+.+-|+|++.+
T Consensus 55 ~~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~ 134 (258)
T PF02153_consen 55 VSAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDT 134 (258)
T ss_dssp HHHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS
T ss_pred HHHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCC
Confidence 6668899999999999999987 344444455555555556799999997766 34678899999999
Q ss_pred CHHHHHHHHHHHHHcCC
Q psy17416 273 SERVITRTREIMTEIGM 289 (290)
Q Consensus 273 ~~e~~~~~~~~~~~lgk 289 (290)
+++.++.+.+||+.+|-
T Consensus 135 ~~~~~~~~~~l~~~~Ga 151 (258)
T PF02153_consen 135 DPEALELVEELWEALGA 151 (258)
T ss_dssp -HHHHHHHHHHHHHCT-
T ss_pred hHHHHHHHHHHHHHCCC
Confidence 99999999999999984
No 54
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.25 E-value=8e-13 Score=125.25 Aligned_cols=153 Identities=13% Similarity=0.129 Sum_probs=119.6
Q ss_pred cchhHHHHHH---HH---HHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhccc
Q psy17416 122 HGLIGQAWAM---IF---ASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED 195 (290)
Q Consensus 122 ~G~~g~~ia~---~~---~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~ 195 (290)
+|.+|..++. .+ ...|++|.+||++++.++.....+++.+... ....++..++|+.+++++
T Consensus 8 aGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~-------------~~~~~I~~ttD~~eal~~ 74 (423)
T cd05297 8 AGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL-------------GAPLKIEATTDRREALDG 74 (423)
T ss_pred CChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc-------------CCCeEEEEeCCHHHHhcC
Confidence 5788887655 22 4557899999999999888776665544321 012467788999999999
Q ss_pred CcEEEEccc----------cchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCC--CCcEEEeccCCCCCCC--
Q psy17416 196 AIFIQESVP----------EILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTH--RSQFIVAHPVNPPYFI-- 261 (290)
Q Consensus 196 aDlVieavp----------e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~--~~r~ig~Hf~~p~~~~-- 261 (290)
||+||++++ |++.+|..+++++++.+++++++.+++|...+.+++..+.. | +++.+||+||+..+
T Consensus 75 AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv~i~t~ 153 (423)
T cd05297 75 ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPMAELTW 153 (423)
T ss_pred CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChHHHHHH
Confidence 999999999 46899999999999999999999999999999999998874 7 99999999999877
Q ss_pred ---CeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 262 ---PLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 262 ---~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+..+ .+.-.+...+......+.+.+|+
T Consensus 154 ~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~ 183 (423)
T cd05297 154 ALNRYTP-IKTVGLCHGVQGTAEQLAKLLGE 183 (423)
T ss_pred HHHHhCC-CCEEEECCcHHHHHHHHHHHhCC
Confidence 5554 33333343466667777777775
No 55
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.24 E-value=3.9e-10 Score=102.67 Aligned_cols=148 Identities=20% Similarity=0.205 Sum_probs=108.9
Q ss_pred eeeEEecccchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|+++ +|.||..++..+...|+ +|.+||++++..+.+.+ .|... ....++++
T Consensus 9 I~IIG---~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~-----------~g~~~------------~~~~~~~~ 62 (307)
T PRK07502 9 VALIG---IGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE-----------LGLGD------------RVTTSAAE 62 (307)
T ss_pred EEEEe---eCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-----------CCCCc------------eecCCHHH
Confidence 35555 79999999999998885 89999999987765543 22211 12345666
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCCC---------
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPY--------- 259 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~~--------- 259 (290)
++++||+||.|+|... ...+++++.+.++++++++ +.++.... .+........+|++.||+....
T Consensus 63 ~~~~aDvViiavp~~~--~~~v~~~l~~~l~~~~iv~-dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~ 139 (307)
T PRK07502 63 AVKGADLVILCVPVGA--SGAVAAEIAPHLKPGAIVT-DVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFA 139 (307)
T ss_pred HhcCCCEEEECCCHHH--HHHHHHHHHhhCCCCCEEE-eCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCH
Confidence 7889999999999654 6788888988899998775 34444433 3444444445899999987543
Q ss_pred ---CCCeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 260 ---FIPLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 260 ---~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
....+.+++...++++.++.+.++++.+|.+
T Consensus 140 ~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~ 173 (307)
T PRK07502 140 ELFENRWCILTPPEGTDPAAVARLTAFWRALGAR 173 (307)
T ss_pred HHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 2235678888889999999999999999963
No 56
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.23 E-value=3.2e-10 Score=100.99 Aligned_cols=144 Identities=16% Similarity=0.176 Sum_probs=112.5
Q ss_pred eeEEecccchhHHHHHHHHHHcCc----eeEEe-cCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGY----KVSLY-DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~----~V~l~-d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
||++ +|.||..++..+.+.|+ +|+++ +++++..+.+.+ .| +....+.
T Consensus 4 ~~IG---~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~-----------~g--------------~~~~~~~ 55 (266)
T PLN02688 4 GFIG---AGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS-----------LG--------------VKTAASN 55 (266)
T ss_pred EEEC---CcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH-----------cC--------------CEEeCCh
Confidence 6776 89999999999999998 88888 999877544322 11 2234566
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-eEEEec
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVP 268 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-lvEvv~ 268 (290)
.+++++||+||.|++ .....+++.++.+.++++++++|.+++++.+.+....... +++..+|..|..... ..-++.
T Consensus 56 ~e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~ 132 (266)
T PLN02688 56 TEVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSL 132 (266)
T ss_pred HHHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEe
Confidence 677889999999997 4447788888888888899888999999999998766544 677777766654443 444667
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q psy17416 269 AAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lgk 289 (290)
+..++++..+++.++++.+|+
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~ 153 (266)
T PLN02688 133 GPAATADDRDLVATLFGAVGK 153 (266)
T ss_pred CCCCCHHHHHHHHHHHHhCCC
Confidence 888899999999999999986
No 57
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.20 E-value=6.8e-10 Score=98.94 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=112.6
Q ss_pred eeEEecccchhHHHHHHHHHHcC---ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAG---YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G---~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
|+++ .|.||..++..+.+.| +.|.+++++++..++..+.. ++..+.+.++
T Consensus 6 ~iIG---~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~------------------------g~~~~~~~~~ 58 (267)
T PRK11880 6 GFIG---GGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY------------------------GVRAATDNQE 58 (267)
T ss_pred EEEe---chHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc------------------------CCeecCChHH
Confidence 5565 7999999999999888 78999999998765443310 1123456666
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-eEEEecCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAA 270 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-lvEvv~~~ 270 (290)
.+.++|+||.|+|... -+++++++.+.+ +++|+|.+++++.+.+...+++..+++..||..|..... ..-++++.
T Consensus 59 ~~~~advVil~v~~~~--~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVKPQV--MEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcCHHH--HHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 7889999999999544 678888887766 467778999999999988776667899999977765443 44578888
Q ss_pred CCCHHHHHHHHHHHHHcCC
Q psy17416 271 WTSERVITRTREIMTEIGM 289 (290)
Q Consensus 271 ~t~~e~~~~~~~~~~~lgk 289 (290)
.++++..+.+..+++.+|+
T Consensus 135 ~~~~~~~~~v~~l~~~lG~ 153 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGK 153 (267)
T ss_pred CCCHHHHHHHHHHHHhCCe
Confidence 9999999999999999996
No 58
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.20 E-value=4.6e-10 Score=106.87 Aligned_cols=142 Identities=15% Similarity=0.207 Sum_probs=109.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.||.+++..+...|++|.++|++++...+... +.| +.++++..+++.+||+||.
T Consensus 9 ~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g--------------v~~~~~~~e~~~~aDvVIl 64 (437)
T PRK08655 9 TGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG--------------VEYANDNIDAAKDADIVII 64 (437)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC--------------CeeccCHHHHhccCCEEEE
Confidence 4899999999999999999999999876433221 111 1234567777899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCC--CcCHHHHhccCCCCCcEEEeccCCC----CCCCCeEEEecCCCCCHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTS--SFLPSVLSEHSTHRSQFIVAHPVNP----PYFIPLVEIVPAAWTSER 275 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts--~~~~~~la~~~~~~~r~ig~Hf~~p----~~~~~lvEvv~~~~t~~e 275 (290)
|+|.+. ...+++++.+.+++++++++.+| ......+.+..+...+|++.||+.. ......+.++|++.++++
T Consensus 65 avp~~~--~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~ 142 (437)
T PRK08655 65 SVPINV--TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNP 142 (437)
T ss_pred ecCHHH--HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHH
Confidence 999654 56889999999999998875554 4555566666555568999998643 345667889999999999
Q ss_pred HHHHHHHHHHHcCC
Q psy17416 276 VITRTREIMTEIGM 289 (290)
Q Consensus 276 ~~~~~~~~~~~lgk 289 (290)
.++++.++|+.+|.
T Consensus 143 ~~~~v~~ll~~~G~ 156 (437)
T PRK08655 143 WFDKVKNFLEKEGA 156 (437)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999986
No 59
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.19 E-value=2.9e-10 Score=102.73 Aligned_cols=141 Identities=19% Similarity=0.277 Sum_probs=100.3
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||..+|..+++.|++|.+||++++.++++.+ .|. ...+++.++++
T Consensus 3 gvIG---~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g~--------------~~~~~~~~~~~ 54 (291)
T TIGR01505 3 GFIG---LGIMGSPMSINLAKAGYQLHVTTIGPEVADELLA-----------AGA--------------VTAETARQVTE 54 (291)
T ss_pred EEEE---ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CCC--------------cccCCHHHHHh
Confidence 5666 7999999999999999999999999988765433 111 12356677889
Q ss_pred cCcEEEEccccchHHHHHHHH--HHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCCCC-------CC
Q psy17416 195 DAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF-------IP 262 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~~~-------~~ 262 (290)
+||+||+|+|++..++..++. .+.+.++++++++ ++|+.++. ++++.+..+ |.||..+|.. ..
T Consensus 55 ~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiv-d~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g 129 (291)
T TIGR01505 55 QADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLV-DMSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEG 129 (291)
T ss_pred cCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcC
Confidence 999999999998877766653 3666788899887 44444443 565555433 5666554422 12
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
.+.++.+ .++++++++.++++.+|++
T Consensus 130 ~l~i~~g--g~~~~~~~~~~ll~~lg~~ 155 (291)
T TIGR01505 130 TLSIMVG--GDQAVFDRVKPLFEALGKN 155 (291)
T ss_pred CEEEEec--CCHHHHHHHHHHHHHhcCC
Confidence 2344444 3789999999999999974
No 60
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.19 E-value=5.7e-13 Score=126.25 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=93.6
Q ss_pred CCcHHhhcccCcEEEEccc----------CChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCC--CCceeeec
Q psy17416 1 TPVLRECLEDAIFIQESVP----------EILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTH--RSQFIVAH 68 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~----------e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~--~~r~~g~h 68 (290)
|+|+++++++||+||++++ |++++|+.+|+++++.+++++++.+|+|...+.+|+..+.+ | +++++|
T Consensus 65 ttD~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~ 143 (423)
T cd05297 65 TTDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLN 143 (423)
T ss_pred eCCHHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEE
Confidence 5799999999999999999 57999999999999999999999999999999999999874 8 999999
Q ss_pred cCCCCCCC-----CeeeEeeCCCCCHHHHHHHHHHHHHhCCcc
Q psy17416 69 PVNPPYFI-----PLVEIVPAAWTSERVITRTREIMTEIGMKP 106 (290)
Q Consensus 69 f~~P~~~~-----~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~ 106 (290)
|+||++.+ +..+ ++.-.++..++.....+++.+|+.|
T Consensus 144 ~tNPv~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~ 185 (423)
T cd05297 144 YANPMAELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP 185 (423)
T ss_pred cCChHHHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence 99999988 7777 5666666668888888999999855
No 61
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.19 E-value=2e-10 Score=102.52 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=107.0
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHH-HHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQI-ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l-~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
-|||+ +|.||..||..+.+.||+|.+||++++.. +.+.+ . ......++.++
T Consensus 3 IafIG---LG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~-----------~--------------Ga~~a~s~~ea 54 (286)
T COG2084 3 IAFIG---LGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAA-----------A--------------GATVAASPAEA 54 (286)
T ss_pred EEEEc---CchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHH-----------c--------------CCcccCCHHHH
Confidence 47887 89999999999999999999999999873 33222 1 12335677778
Q ss_pred cccCcEEEEccccchHHHHHHHH--HHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCCCCC------
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYFI------ 261 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~~~~------ 261 (290)
++++|+||.++|...+++..++. .+.+.++++++++ +.|+++++ ++++.+... |.+|.+.|...
T Consensus 55 a~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~I-DmSTisp~~a~~~a~~~~~~----G~~~lDAPVsGg~~~A~ 129 (286)
T COG2084 55 AAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVI-DMSTISPETARELAAALAAK----GLEFLDAPVSGGVPGAA 129 (286)
T ss_pred HHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHhc----CCcEEecCccCCchhhh
Confidence 99999999999999999888884 6888899999987 33334433 555554433 77887766332
Q ss_pred --CeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 262 --PLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 262 --~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
-|.-++.| +++.+++++.+++.+|++
T Consensus 130 ~GtLtimvGG---~~~~f~r~~pvl~~~g~~ 157 (286)
T COG2084 130 AGTLTIMVGG---DAEAFERAKPVLEAMGKN 157 (286)
T ss_pred hCceEEEeCC---CHHHHHHHHHHHHHhcCc
Confidence 25556666 999999999999999984
No 62
>PLN02712 arogenate dehydrogenase
Probab=99.15 E-value=9e-09 Score=102.59 Aligned_cols=139 Identities=17% Similarity=0.154 Sum_probs=95.1
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc-cCcEEEE
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE-DAIFIQE 201 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~-~aDlVie 201 (290)
|.||..+|..+...|++|..||++... +.+.+ .| +....++++.+. ++|+||.
T Consensus 378 G~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~-----------~G--------------v~~~~~~~el~~~~aDvVIL 431 (667)
T PLN02712 378 GNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQK-----------LG--------------VSYFSDADDLCEEHPEVILL 431 (667)
T ss_pred CHHHHHHHHHHHHCcCEEEEEECChHH-HHHHH-----------cC--------------CeEeCCHHHHHhcCCCEEEE
Confidence 789999999999999999999998542 22211 11 112456666554 5899999
Q ss_pred ccccchHHHHHHHHHHhh-hCCCCcEEEeCCCC--cCHHHHhccCCCCCcEEEeccCCCCCCCC-----eE-----EEec
Q psy17416 202 SVPEILQIKHQVYRAIDI-FMSSNTILSSSTSS--FLPSVLSEHSTHRSQFIVAHPVNPPYFIP-----LV-----EIVP 268 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~-~~~~~~ii~s~ts~--~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-----lv-----Evv~ 268 (290)
|+|. ..-..++.++.. .++++++++.-+|+ .++..+....+...+|++.||..++...+ +- -++.
T Consensus 432 avP~--~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~ 509 (667)
T PLN02712 432 CTSI--LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIG 509 (667)
T ss_pred CCCh--HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCcEeC
Confidence 9994 446677887765 57889998855444 45556655555545799999988776431 11 1123
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q psy17416 269 AAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lgk 289 (290)
++....+.++.+.++|+.+|.
T Consensus 510 ~~~~~~~~~~~l~~l~~~lGa 530 (667)
T PLN02712 510 SDDRRVSRCDSFLDIFAREGC 530 (667)
T ss_pred CCcchHHHHHHHHHHHHHcCC
Confidence 445566677777899999985
No 63
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.14 E-value=9.3e-11 Score=97.03 Aligned_cols=139 Identities=25% Similarity=0.283 Sum_probs=98.3
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-||++ +|.||..+|..+.+.|++|.+||++++..++..+ .......++.+++
T Consensus 4 Ig~IG---lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-------------------------~g~~~~~s~~e~~ 55 (163)
T PF03446_consen 4 IGFIG---LGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE-------------------------AGAEVADSPAEAA 55 (163)
T ss_dssp EEEE-----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH-------------------------TTEEEESSHHHHH
T ss_pred EEEEc---hHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH-------------------------hhhhhhhhhhhHh
Confidence 46777 7999999999999999999999999988776665 1234578899999
Q ss_pred ccCcEEEEccccchHHHHHHHHH--HhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCCC--------C
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRA--IDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPY--------F 260 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~--l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~~--------~ 260 (290)
++||+|+.|+|.+..++ +++.+ +.+.++++.+++ ++|+.+++ ++++.+... |.||...|- .
T Consensus 56 ~~~dvvi~~v~~~~~v~-~v~~~~~i~~~l~~g~iii-d~sT~~p~~~~~~~~~~~~~----g~~~vdapV~Gg~~~a~~ 129 (163)
T PF03446_consen 56 EQADVVILCVPDDDAVE-AVLFGENILAGLRPGKIII-DMSTISPETSRELAERLAAK----GVRYVDAPVSGGPPGAEE 129 (163)
T ss_dssp HHBSEEEE-SSSHHHHH-HHHHCTTHGGGS-TTEEEE-E-SS--HHHHHHHHHHHHHT----TEEEEEEEEESHHHHHHH
T ss_pred hcccceEeecccchhhh-hhhhhhHHhhccccceEEE-ecCCcchhhhhhhhhhhhhc----cceeeeeeeecccccccc
Confidence 99999999999877764 45555 788888998887 44444443 455444333 355544331 2
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 261 IPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 261 ~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
..+.-++.| +++++++++.+++.+|+
T Consensus 130 g~l~~~~gG---~~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 130 GTLTIMVGG---DEEAFERVRPLLEAMGK 155 (163)
T ss_dssp TTEEEEEES----HHHHHHHHHHHHHHEE
T ss_pred cceEEEccC---CHHHHHHHHHHHHHHhC
Confidence 345667776 88999999999999876
No 64
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.12 E-value=3.1e-09 Score=95.26 Aligned_cols=142 Identities=23% Similarity=0.279 Sum_probs=102.5
Q ss_pred eeEEecccchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
|+++ +|.||.+++..+.+.|+ +|..||++++..+.+.+ .|..+ ...+++++
T Consensus 4 ~iIG---~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~-----------~g~~~-------------~~~~~~~~ 56 (275)
T PRK08507 4 GIIG---LGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE-----------LGLVD-------------EIVSFEEL 56 (275)
T ss_pred EEEc---cCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH-----------CCCCc-------------ccCCHHHH
Confidence 4565 79999999999998886 78889999987765543 22211 12355554
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCC--CCCcEEEeccCC------CCC-----
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST--HRSQFIVAHPVN------PPY----- 259 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~--~~~r~ig~Hf~~------p~~----- 259 (290)
.+||+||.|+|.+. ..+++.++.+ ++++++|+..+| .... +.+.+. .+.+|++.||.. |..
T Consensus 57 -~~aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs-~k~~-i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l 130 (275)
T PRK08507 57 -KKCDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGS-TKAK-IIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGL 130 (275)
T ss_pred -hcCCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECcc-chHH-HHHHHHHhcCCCEEecCCcCcCchhhHHhccHHH
Confidence 45999999999665 5678888888 889998875333 3322 222221 235799999974 221
Q ss_pred -CCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 260 -FIPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 260 -~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
....+.+++++.++++.++.+.++|+.+|.
T Consensus 131 ~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~ 161 (275)
T PRK08507 131 YEGKVVVLCDVEKSGEKHQERAKEIFSGLGM 161 (275)
T ss_pred hCCCeEEEecCCCCCHHHHHHHHHHHHHhCC
Confidence 355788999999999999999999999996
No 65
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.12 E-value=1.2e-09 Score=100.68 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcccc
Q psy17416 126 GQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPE 205 (290)
Q Consensus 126 g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe 205 (290)
|..+|..++..|++|++||++++.++... ++.+.. .+++.+++..+++++||+||.|+|.
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~--------------~Gi~~asd~~eaa~~ADvVIlaVP~ 91 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVED--------------AGVKVVSDDAEAAKHGEIHILFTPF 91 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHH--------------CCCEEeCCHHHHHhCCCEEEEECCC
Confidence 77889999999999999999998654311 111111 1234556777788999999999996
Q ss_pred chHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHH----hccCCCCCcEEEeccCCCCCC----CCeEEEecCC------C
Q psy17416 206 ILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL----SEHSTHRSQFIVAHPVNPPYF----IPLVEIVPAA------W 271 (290)
Q Consensus 206 ~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l----a~~~~~~~r~ig~Hf~~p~~~----~~lvEvv~~~------~ 271 (290)
.. ..++++.++.+.++++++++ ++|+.+...+ ...+..+.+.+|.||+.|... ..-++++.+. .
T Consensus 92 ~~-~v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~ 169 (342)
T PRK12557 92 GK-KTVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTEL 169 (342)
T ss_pred cH-HHHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccC
Confidence 55 45678888999999999876 5555555533 344444455667777665532 1123455443 3
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q psy17416 272 TSERVITRTREIMTEIGMK 290 (290)
Q Consensus 272 t~~e~~~~~~~~~~~lgk~ 290 (290)
.+++.++++.++++.+|++
T Consensus 170 ~~~e~~e~v~~LL~a~G~~ 188 (342)
T PRK12557 170 ATEEQIEKCVELAESIGKE 188 (342)
T ss_pred CCHHHHHHHHHHHHHcCCE
Confidence 4899999999999999973
No 66
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.11 E-value=9.4e-10 Score=99.55 Aligned_cols=142 Identities=15% Similarity=0.229 Sum_probs=102.0
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..+|..+++.|++|.+||++++..+++.+ .| +..++++++++
T Consensus 5 IgviG---~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~-----------~g--------------~~~~~~~~e~~ 56 (296)
T PRK11559 5 VGFIG---LGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA-----------AG--------------AETASTAKAVA 56 (296)
T ss_pred EEEEc---cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CC--------------CeecCCHHHHH
Confidence 35665 7999999999999999999999999987665432 11 12356777788
Q ss_pred ccCcEEEEccccchHHHHHHH--HHHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCCCCC-------
Q psy17416 194 EDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYFI------- 261 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~~~~------- 261 (290)
++||+||+|+|+...++..++ ..+.+.++++++++ ++|+.++. ++++.+..+ |.||.++|...
T Consensus 57 ~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~ 131 (296)
T PRK11559 57 EQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAID 131 (296)
T ss_pred hcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhh
Confidence 999999999999887776655 34777788999887 44455543 455554333 67776665332
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 262 PLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 262 ~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
..+.++.| ++++.++++.++++.+|++
T Consensus 132 g~l~i~~g--g~~~~~~~~~~~l~~~~~~ 158 (296)
T PRK11559 132 GTLSVMVG--GDKAIFDKYYDLMKAMAGS 158 (296)
T ss_pred CcEEEEEC--CCHHHHHHHHHHHHHhcCC
Confidence 23344444 2689999999999999873
No 67
>PLN02256 arogenate dehydrogenase
Probab=99.07 E-value=5.6e-09 Score=94.84 Aligned_cols=145 Identities=18% Similarity=0.099 Sum_probs=103.0
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||.+++..+.+.|++|..+|+++.. +.+.+ .|. ...++.++.+
T Consensus 39 I~IIG---~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~-----------~gv--------------~~~~~~~e~~ 89 (304)
T PLN02256 39 IGIVG---FGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAE-----------LGV--------------SFFRDPDDFC 89 (304)
T ss_pred EEEEe---eCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHH-----------cCC--------------eeeCCHHHHh
Confidence 45565 7999999999999999999999998631 11111 111 1235666654
Q ss_pred -ccCcEEEEccccchHHHHHHHHHH-hhhCCCCcEEEeCCC--CcCHHHHhccCCCCCcEEEeccCCCCCCC------Ce
Q psy17416 194 -EDAIFIQESVPEILQIKHQVYRAI-DIFMSSNTILSSSTS--SFLPSVLSEHSTHRSQFIVAHPVNPPYFI------PL 263 (290)
Q Consensus 194 -~~aDlVieavpe~~~~k~~~~~~l-~~~~~~~~ii~s~ts--~~~~~~la~~~~~~~r~ig~Hf~~p~~~~------~l 263 (290)
.++|+||.|+|.. .-.++++++ ...+++++++++-+| +..+..+...++...+|+|.||..++... .-
T Consensus 90 ~~~aDvVilavp~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~ 167 (304)
T PLN02256 90 EEHPDVVLLCTSIL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLP 167 (304)
T ss_pred hCCCCEEEEecCHH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCe
Confidence 4799999999954 467888888 567889998875444 55666776666555589999998777542 12
Q ss_pred EEEecC----CCCCHHHHHHHHHHHHHcCC
Q psy17416 264 VEIVPA----AWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 264 vEvv~~----~~t~~e~~~~~~~~~~~lgk 289 (290)
+-+++. +.++++.++.+.++|+.+|.
T Consensus 168 ~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa 197 (304)
T PLN02256 168 FVYDKVRIGDEGEREARCERFLDIFEEEGC 197 (304)
T ss_pred EEEecceecCCCCCHHHHHHHHHHHHHCCC
Confidence 222222 67899999999999999996
No 68
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.02 E-value=7e-09 Score=96.27 Aligned_cols=132 Identities=12% Similarity=0.114 Sum_probs=94.1
Q ss_pred eeEEecccchhHHHHHHHHHH-cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 115 GFALNRIHGLIGQAWAMIFAS-AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~-~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
++++ +.|.||.++|..+.+ .|++|+.+|++.+ ...++++.+
T Consensus 8 ~IIG--l~GliGgslA~alk~~~~~~V~g~D~~d~------------------------------------~~~~~~~~v 49 (370)
T PRK08818 8 GIVG--SAGAYGRWLARFLRTRMQLEVIGHDPADP------------------------------------GSLDPATLL 49 (370)
T ss_pred EEEC--CCCHHHHHHHHHHHhcCCCEEEEEcCCcc------------------------------------ccCCHHHHh
Confidence 4454 239999999999986 4889999998410 123556678
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhh---CCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCC-----CCCeEE
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIF---MSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY-----FIPLVE 265 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~---~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~-----~~~lvE 265 (290)
++||+||.|+| ...-.++++++.++ ++++++|+ ..+|.....+........+|+|.||+..+. ....+-
T Consensus 50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVt-DVgSvK~~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~i 126 (370)
T PRK08818 50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWL-DVTSIKQAPVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMV 126 (370)
T ss_pred cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEE-ECCCCcHHHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEE
Confidence 99999999999 55577999999876 78999886 444444333322233335799999988764 345666
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 266 IVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 266 vv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++++ ..++.++.+.++++.+|.
T Consensus 127 ltp~--~~~~~~~~v~~l~~~~Ga 148 (370)
T PRK08818 127 VCEA--RLQHWSPWVQSLCSALQA 148 (370)
T ss_pred EeCC--CchhHHHHHHHHHHHcCC
Confidence 7776 345557899999999985
No 69
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.01 E-value=8.9e-09 Score=92.51 Aligned_cols=147 Identities=15% Similarity=0.177 Sum_probs=112.0
Q ss_pred eeeEEecccchhHHHHHHHHHHcC----ceeEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAG----YKVSLYDVLSE-QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV 188 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G----~~V~l~d~~~e-~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~ 188 (290)
-||++ +|.||..++..+.+.| ++|.+++++++ .++.... . . +++.+.+
T Consensus 6 I~~IG---~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----~------~--------------g~~~~~~ 58 (279)
T PRK07679 6 ISFLG---AGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----K------Y--------------GVKGTHN 58 (279)
T ss_pred EEEEC---ccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----h------c--------------CceEeCC
Confidence 46776 8999999999999888 78999999764 3332221 0 0 1223456
Q ss_pred hHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCC-CCCCeEEEe
Q psy17416 189 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPP-YFIPLVEIV 267 (290)
Q Consensus 189 l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~-~~~~lvEvv 267 (290)
..+++.+||+||.|+|.+. -.+++.++.+.++++.+|+|-.++++++.+.+......++++.||-.|. ....+.-++
T Consensus 59 ~~e~~~~aDvVilav~p~~--~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~ 136 (279)
T PRK07679 59 KKELLTDANILFLAMKPKD--VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAIS 136 (279)
T ss_pred HHHHHhcCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEe
Confidence 6677889999999999555 5677788888888889898888999998888776655679999984443 223455677
Q ss_pred cCCCCCHHHHHHHHHHHHHcCC
Q psy17416 268 PAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 268 ~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+++..+++..+.+.++++.+|+
T Consensus 137 ~~~~~~~~~~~~v~~l~~~~G~ 158 (279)
T PRK07679 137 PSKHATAEHIQTAKALFETIGL 158 (279)
T ss_pred eCCCCCHHHHHHHHHHHHhCCc
Confidence 8888899999999999999997
No 70
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.97 E-value=1.6e-08 Score=102.60 Aligned_cols=147 Identities=21% Similarity=0.245 Sum_probs=111.1
Q ss_pred eeeEEecccchhHHHHHHHHHHcC--ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G--~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|+++ +|.||.+++..+...| .+|.+||++++.++.+.+ .|... ...+++.+
T Consensus 6 I~IIG---~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~-----------~g~~~------------~~~~~~~~ 59 (735)
T PRK14806 6 VVVIG---LGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVS-----------LGVID------------RGEEDLAE 59 (735)
T ss_pred EEEEe---eCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHH-----------CCCCC------------cccCCHHH
Confidence 35665 7999999999999888 489999999987765433 22211 12356677
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC---HHHHhccCC-CCCcEEEeccCCCCC--------
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL---PSVLSEHST-HRSQFIVAHPVNPPY-------- 259 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~la~~~~-~~~r~ig~Hf~~p~~-------- 259 (290)
++.++|+||.|+|.+ ...++++++.+.++++++|. +.++.+ ...+.+.+. .+.||++.||+..+.
T Consensus 60 ~~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~-d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~ 136 (735)
T PRK14806 60 AVSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVT-DVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAAN 136 (735)
T ss_pred HhcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEE-EcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhh
Confidence 789999999999965 47899999999998988775 333333 656655543 357999999975332
Q ss_pred ----CCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 260 ----FIPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 260 ----~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
..+.+.++++..++++..+.+.++++.+|+
T Consensus 137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~ 170 (735)
T PRK14806 137 ADLFRNHKVILTPLAETDPAALARVDRLWRAVGA 170 (735)
T ss_pred hHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence 345678899999999999999999999996
No 71
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=98.97 E-value=1.1e-08 Score=92.73 Aligned_cols=145 Identities=14% Similarity=0.200 Sum_probs=98.4
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-||++ +|.||..++..+++.|++|.+||++++..++..+ .| +..+.++.+++
T Consensus 4 Ig~IG---lG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~-----------~g--------------~~~~~s~~~~~ 55 (296)
T PRK15461 4 IAFIG---LGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD-----------KG--------------ATPAASPAQAA 55 (296)
T ss_pred EEEEe---eCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC--------------CcccCCHHHHH
Confidence 36776 8999999999999999999999999988765433 11 12356777788
Q ss_pred ccCcEEEEccccchHHHHHHHH--HHhhhCCCCcEEEeCCCCcCHH---HHhccCCCC-CcEEEeccCCCC---CCCCeE
Q psy17416 194 EDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFLPS---VLSEHSTHR-SQFIVAHPVNPP---YFIPLV 264 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~-~r~ig~Hf~~p~---~~~~lv 264 (290)
++||+||.|+|.+..++..++. .+.+.++++++++ ++|+..+. +++..+... .+|+-.-....+ ....++
T Consensus 56 ~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi-d~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~ 134 (296)
T PRK15461 56 AGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI-DMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLL 134 (296)
T ss_pred hcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEE
Confidence 9999999999998776655542 4566678888775 45555543 444444322 233322111111 122355
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 265 EIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 265 Evv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
-++.| +++.+++++.+++.+|++
T Consensus 135 ~~~gg---~~~~~~~~~p~l~~~g~~ 157 (296)
T PRK15461 135 LLAGG---TAEQVERATPILMAMGNE 157 (296)
T ss_pred EEECC---CHHHHHHHHHHHHHHcCC
Confidence 55555 889999999999999973
No 72
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.96 E-value=1.4e-09 Score=98.11 Aligned_cols=102 Identities=25% Similarity=0.270 Sum_probs=86.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||.++|..++++|++|.+|.++++..++.....++ ..+++......++..++|+.+++++||+|+.
T Consensus 9 aGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N-----------~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~ 77 (329)
T COG0240 9 AGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETREN-----------PKYLPGILLPPNLKATTDLAEALDGADIIVI 77 (329)
T ss_pred CChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcC-----------ccccCCccCCcccccccCHHHHHhcCCEEEE
Confidence 69999999999999999999999999998875553222 2334555566889999999999999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP 236 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 236 (290)
++|... -+++++++...+++++++++.++++..
T Consensus 78 avPs~~--~r~v~~~l~~~l~~~~~iv~~sKGie~ 110 (329)
T COG0240 78 AVPSQA--LREVLRQLKPLLLKDAIIVSATKGLEP 110 (329)
T ss_pred ECChHH--HHHHHHHHhhhccCCCeEEEEeccccC
Confidence 999666 889999998899999999988877765
No 73
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.96 E-value=3.2e-09 Score=87.27 Aligned_cols=100 Identities=31% Similarity=0.341 Sum_probs=77.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.||.++|..++..|++|.+|+++++.++...+..+ ....++......++..++|++++++++|++|.
T Consensus 7 aG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~-----------n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iii 75 (157)
T PF01210_consen 7 AGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQ-----------NPKYLPGIKLPENIKATTDLEEALEDADIIII 75 (157)
T ss_dssp SSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTS-----------ETTTSTTSBEETTEEEESSHHHHHTT-SEEEE
T ss_pred cCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCC-----------CCCCCCCcccCcccccccCHHHHhCcccEEEe
Confidence 6899999999999999999999999987766554211 11223333445678889999999999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCc
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF 234 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 234 (290)
++|... -+++++++.++++++.++++.++++
T Consensus 76 avPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 76 AVPSQA--HREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence 999777 7899999999999999999988888
No 74
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.90 E-value=5.1e-09 Score=97.88 Aligned_cols=109 Identities=17% Similarity=0.136 Sum_probs=91.6
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCC--CChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~--~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
+.++++++||+||+|+|++. ..++++++.. +++++|++.++|. .++..+++... .+|+|.||++++....+.+
T Consensus 135 ~~~~~~~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~ 209 (374)
T PRK11199 135 RAEDILADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAK 209 (374)
T ss_pred hHHHHHhcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCC
Confidence 56778899999999999996 5889999999 8999999999884 66778887654 3699999999998777766
Q ss_pred --EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceee
Q psy17416 81 --IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF 116 (290)
Q Consensus 81 --iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf 116 (290)
++..+.|+++.++.+.+++..+|..++.+..+....
T Consensus 210 ~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~ 247 (374)
T PRK11199 210 QVVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQ 247 (374)
T ss_pred CEEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHH
Confidence 777888899999999999999999998875444333
No 75
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.90 E-value=1.5e-08 Score=91.49 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=95.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||..++..+.+.|++|.+||++++..+...+ .| ...++++.+++++||+||.
T Consensus 4 lG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g--------------~~~~~s~~~~~~~advVil 58 (288)
T TIGR01692 4 LGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA-----------AG--------------AQAAASPAEAAEGADRVIT 58 (288)
T ss_pred ccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----------cC--------------CeecCCHHHHHhcCCEEEE
Confidence 6899999999999999999999999987765433 11 1235677888999999999
Q ss_pred ccccchHHHHHHH--HHHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCCCC--------CCeEEEec
Q psy17416 202 SVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF--------IPLVEIVP 268 (290)
Q Consensus 202 avpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~~~--------~~lvEvv~ 268 (290)
|+|.+..++.-++ .++.+.++++.+++ ++|+++++ ++++.+... |.+|...|.. ..+.-++.
T Consensus 59 ~vp~~~~~~~v~~g~~~l~~~~~~g~~vi-d~st~~p~~~~~~~~~~~~~----g~~~vdaPv~Gg~~~a~~g~l~~~~g 133 (288)
T TIGR01692 59 MLPAGQHVISVYSGDEGILPKVAKGSLLI-DCSTIDPDSARKLAELAAAH----GAVFMDAPVSGGVGGARAGTLTFMVG 133 (288)
T ss_pred eCCChHHHHHHHcCcchHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEECCCCCCHHHHhhCcEEEEEC
Confidence 9998665543332 56777788888776 44466654 333333221 4555443322 33555666
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC
Q psy17416 269 AAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
| +++.++++..+++.+|++
T Consensus 134 g---~~~~~~~~~~~l~~~g~~ 152 (288)
T TIGR01692 134 G---VAEEFAAAEPVLGPMGRN 152 (288)
T ss_pred C---CHHHHHHHHHHHHHhcCC
Confidence 6 678999999999999873
No 76
>KOG0409|consensus
Probab=98.85 E-value=2.7e-08 Score=88.12 Aligned_cols=144 Identities=17% Similarity=0.201 Sum_probs=101.9
Q ss_pred cceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 112 EIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 112 d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-.-||++ +|.||..|+..+...||.|++||++....+...+ .|. +...++.|
T Consensus 36 ~~iGFIG---LG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~-----------~Ga--------------~v~~sPae 87 (327)
T KOG0409|consen 36 TRIGFIG---LGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQE-----------AGA--------------RVANSPAE 87 (327)
T ss_pred ceeeEEe---eccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHH-----------hch--------------hhhCCHHH
Confidence 3468888 8999999999999999999999999887655444 111 23567888
Q ss_pred hcccCcEEEEccccchHHHHHHHHH--HhhhCCCCcEEEeCCCCcC---HHHHhccCCCCCcEEEeccCCCC--------
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRA--IDIFMSSNTILSSSTSSFL---PSVLSEHSTHRSQFIVAHPVNPP-------- 258 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~--l~~~~~~~~ii~s~ts~~~---~~~la~~~~~~~r~ig~Hf~~p~-------- 258 (290)
..++||+||-++|.+.++|..++.. +.+..+++.......|++. ..++++..... +..|...|
T Consensus 88 Vae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSGg~~~A 163 (327)
T KOG0409|consen 88 VAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSGGVKGA 163 (327)
T ss_pred HHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccCCchhh
Confidence 8999999999999999998888864 3344445443322333333 34777766544 33343333
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 259 YFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 259 ~~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
....|..... .++++++++..+++.+||+
T Consensus 164 ~~G~Ltimag---Gde~~~~~~~~~~~~mGk~ 192 (327)
T KOG0409|consen 164 EEGTLTIMAG---GDEALFEAASPVFKLMGKN 192 (327)
T ss_pred hcCeEEEEec---CcHHHHHHHHHHHHHhcce
Confidence 2233555555 5999999999999999985
No 77
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.80 E-value=3.6e-08 Score=94.77 Aligned_cols=150 Identities=11% Similarity=0.153 Sum_probs=99.7
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|||+ +|.||..+|..+++.|++|.+||++++..+...+.... .|. ..+....++++++
T Consensus 9 IG~IG---LG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~-------~Ga-----------~~~~~a~s~~e~v 67 (493)
T PLN02350 9 IGLAG---LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-------EGN-----------LPLYGFKDPEDFV 67 (493)
T ss_pred EEEEe---eHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhh-------cCC-----------cccccCCCHHHHH
Confidence 58887 89999999999999999999999999887765541000 011 1123456777766
Q ss_pred cc---CcEEEEccccchHHHHHHHHHHhhhCCCCcEEE-eCCCCcC-HHHHhccCCCC-CcEEEeccCCC---CCCCCeE
Q psy17416 194 ED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILS-SSTSSFL-PSVLSEHSTHR-SQFIVAHPVNP---PYFIPLV 264 (290)
Q Consensus 194 ~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~-~~~la~~~~~~-~r~ig~Hf~~p---~~~~~lv 264 (290)
+. +|+||.++|..-.+.. ++..+.+.+.++.|++ .+|++.. ..++++.+... .+|+++--... ....+ .
T Consensus 68 ~~l~~~dvIi~~v~~~~aV~~-Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~ 145 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPVDQ-TIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-S 145 (493)
T ss_pred hcCCCCCEEEEECCCcHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-e
Confidence 55 9999999998887755 4477888888888887 3333322 22444444322 33444333211 11233 3
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 265 EIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 265 Evv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
-++.| ++++++++..+++.++.
T Consensus 146 im~GG---~~~a~~~v~pvL~~ia~ 167 (493)
T PLN02350 146 LMPGG---SFEAYKNIEDILEKVAA 167 (493)
T ss_pred EEecC---CHHHHHHHHHHHHHHhh
Confidence 34555 89999999999999884
No 78
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.77 E-value=2.6e-07 Score=82.74 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=110.4
Q ss_pred eeeEEecccchhHHHHHHHHHHcCc----eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGY----KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~----~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
-||++ +|.||.+++..+.+.|+ +|.++|++++.++++.+. .| +..+++.
T Consensus 5 IgfIG---~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g--------------~~~~~~~ 57 (272)
T PRK12491 5 IGFIG---CGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG--------------ITITTNN 57 (272)
T ss_pred EEEEC---ccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC--------------cEEeCCc
Confidence 47887 89999999999998875 699999999876654430 11 1234566
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-eEEEec
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVP 268 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-lvEvv~ 268 (290)
.+.+.+||+||.|++. ..-.++++++.+.++++++++|-..+++++.+.+.++.+.+++=.=|--|..... ..=+.+
T Consensus 58 ~e~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~ 135 (272)
T PRK12491 58 NEVANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCF 135 (272)
T ss_pred HHHHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEe
Confidence 6678899999999994 4577888999988889999999999999999998876444444333333332222 223467
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q psy17416 269 AAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lgk 289 (290)
++..+++..+.+..+|..+|+
T Consensus 136 ~~~~~~~~~~~v~~lf~~~G~ 156 (272)
T PRK12491 136 NEMVTEKDIKEVLNIFNIFGQ 156 (272)
T ss_pred CCCCCHHHHHHHHHHHHcCCC
Confidence 788899999999999999997
No 79
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.72 E-value=9.7e-08 Score=86.39 Aligned_cols=143 Identities=18% Similarity=0.238 Sum_probs=94.7
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|||+ +|.||..++..+.+.|++|.+||+++. .++.. +.| .....+..+++
T Consensus 3 Ig~IG---lG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~-----------~~g--------------~~~~~s~~~~~ 53 (292)
T PRK15059 3 LGFIG---LGIMGTPMAINLARAGHQLHVTTIGPV-ADELL-----------SLG--------------AVSVETARQVT 53 (292)
T ss_pred EEEEc---cCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHH-----------HcC--------------CeecCCHHHHH
Confidence 36776 899999999999999999999999873 22211 111 12245666778
Q ss_pred ccCcEEEEccccchHHHHHHHH--HHhhhCCCCcEEEeCCCCcCHH---HHhccCCC-CCcEEEeccCCCC----CCCCe
Q psy17416 194 EDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFLPS---VLSEHSTH-RSQFIVAHPVNPP----YFIPL 263 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~-~~r~ig~Hf~~p~----~~~~l 263 (290)
++||+||.|+|.+..++..++. .+.+.+.++.+++ ++|+.++. ++++.+.. -.+|+- +|.... ....+
T Consensus 54 ~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivv-d~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l 131 (292)
T PRK15059 54 EASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIV-DMSSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTL 131 (292)
T ss_pred hcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcE
Confidence 8999999999988777665554 2555567788775 44544444 44444432 233444 232211 12335
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 264 VEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 264 vEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
.-++.| +++.+++++.+++.+|++
T Consensus 132 ~~~~gG---~~~~~~~~~p~l~~~g~~ 155 (292)
T PRK15059 132 SIMVGG---DEAVFERVKPLFELLGKN 155 (292)
T ss_pred EEEEcC---CHHHHHHHHHHHHHHcCC
Confidence 555655 799999999999999973
No 80
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.70 E-value=4.4e-07 Score=82.36 Aligned_cols=145 Identities=12% Similarity=0.100 Sum_probs=96.1
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
||++ +|.||..++..+.+.|++|.+||++++..++..+ .|.... ....++.+.+.
T Consensus 4 g~IG---lG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~-----------~g~~~~-----------~s~~~~~~~~~ 58 (298)
T TIGR00872 4 GLIG---LGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE-----------DRTTGV-----------ANLRELSQRLS 58 (298)
T ss_pred EEEc---chHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCccc-----------CCHHHHHhhcC
Confidence 5666 7999999999999999999999999987765543 121100 00123333456
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCc--CHHHHhccCC-CCCcEEEeccCCCCC--CCCeEEEecC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF--LPSVLSEHST-HRSQFIVAHPVNPPY--FIPLVEIVPA 269 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~la~~~~-~~~r~ig~Hf~~p~~--~~~lvEvv~~ 269 (290)
++|+|+.|+|.. .-++++.++.+.++++.+++..+++. ...+++..+. ...+|+..+....+. ...+.-++.|
T Consensus 59 ~~dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG 136 (298)
T TIGR00872 59 APRVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG 136 (298)
T ss_pred CCCEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC
Confidence 799999999987 35677889999999888887544443 3334444333 233555555432221 0113335555
Q ss_pred CCCCHHHHHHHHHHHHHcCC
Q psy17416 270 AWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 270 ~~t~~e~~~~~~~~~~~lgk 289 (290)
+++.++++..+++.+++
T Consensus 137 ---~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 137 ---DGEAFARAEPLFADVAP 153 (298)
T ss_pred ---CHHHHHHHHHHHHHhcC
Confidence 79999999999999875
No 81
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.70 E-value=1e-07 Score=91.34 Aligned_cols=145 Identities=12% Similarity=0.148 Sum_probs=99.8
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-||++ +|.||..+|..+++.|++|.+||++++..+...+...+ .|. .+..++++++++
T Consensus 4 IgvIG---LG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~-------~g~------------~i~~~~s~~e~v 61 (470)
T PTZ00142 4 IGLIG---LAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKE-------GNT------------RVKGYHTLEELV 61 (470)
T ss_pred EEEEe---EhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhh-------cCC------------cceecCCHHHHH
Confidence 46776 89999999999999999999999999988766542111 010 233467787776
Q ss_pred c---cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCCCCcEEEeccCCCCCC--------
Q psy17416 194 E---DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTHRSQFIVAHPVNPPYF-------- 260 (290)
Q Consensus 194 ~---~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~~~r~ig~Hf~~p~~~-------- 260 (290)
+ ++|+||.++|..-.+ .+++.++.+.+.++.||+..+++...+ ..+..+... |.||...|..
T Consensus 62 ~~l~~~d~Iil~v~~~~~v-~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~----Gi~fldapVSGG~~gA~~ 136 (470)
T PTZ00142 62 NSLKKPRKVILLIKAGEAV-DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEK----GILYLGMGVSGGEEGARY 136 (470)
T ss_pred hcCCCCCEEEEEeCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEcCCCCCCHHHHhc
Confidence 5 589999998876655 556688999999999988555444333 333333222 5555443311
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 261 IPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 261 ~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
.+ .-++.| ++++++++..+++.+++
T Consensus 137 G~-~lm~GG---~~~a~~~~~piL~~ia~ 161 (470)
T PTZ00142 137 GP-SLMPGG---NKEAYDHVKDILEKCSA 161 (470)
T ss_pred CC-EEEEeC---CHHHHHHHHHHHHHHhh
Confidence 22 224445 88999999999999875
No 82
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.68 E-value=2.4e-07 Score=84.15 Aligned_cols=140 Identities=20% Similarity=0.155 Sum_probs=93.5
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|||+ +|.||..++..+.+.|++|.+||++++..+.+.+ .| ...+.++++.+
T Consensus 3 Ig~IG---lG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-----------~g--------------~~~~~s~~~~~ 54 (299)
T PRK12490 3 LGLIG---LGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGK-----------LG--------------ITARHSLEELV 54 (299)
T ss_pred EEEEc---ccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----------CC--------------CeecCCHHHHH
Confidence 36776 8999999999999999999999999977655432 11 12345666666
Q ss_pred cc---CcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeC-CC-CcCHHHHhccCCCCCcEEEeccCCCCCCC-------
Q psy17416 194 ED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS-TS-SFLPSVLSEHSTHRSQFIVAHPVNPPYFI------- 261 (290)
Q Consensus 194 ~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~-ts-~~~~~~la~~~~~~~r~ig~Hf~~p~~~~------- 261 (290)
++ +|+||.|+|.+..+ +.++.++.+.++++.+++.. |+ .....++++.+... |.+|...|...
T Consensus 55 ~~~~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~vdapV~G~~~~a~~ 129 (299)
T PRK12490 55 SKLEAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAER----GIHYVDCGTSGGVWGLRN 129 (299)
T ss_pred HhCCCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHc----CCeEEeCCCCCCHHHHhc
Confidence 55 69999999987444 45667788888888877632 22 22333555544322 34444322111
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 262 PLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 262 ~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
...-++.| +++++++++.+++.+|+
T Consensus 130 g~~~~~gG---~~~~~~~~~~~l~~~~~ 154 (299)
T PRK12490 130 GYCLMVGG---DKEIYDRLEPVFKALAP 154 (299)
T ss_pred CCeEEecC---CHHHHHHHHHHHHHhcC
Confidence 11234555 78999999999999985
No 83
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=98.66 E-value=9.5e-08 Score=86.29 Aligned_cols=140 Identities=18% Similarity=0.169 Sum_probs=98.2
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHH--HHhhcCCCcEEeecCCCCChH---HHhcccCCCCceeeeccCCCCCC-
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRA--IDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF- 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~--~~~~~~~~~i~~snts~~~~~---~l~~~~~~~~r~~g~hf~~P~~~- 75 (290)
+++++++++||+||.|+|++..+|.-+|.. +...+++++++. |+|+.++. ++++.++.+ |+||..+|-.
T Consensus 47 ~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiv-d~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g 121 (291)
T TIGR01505 47 ETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLV-DMSSISPIESKRFAKAVKEK----GIDYLDAPVSG 121 (291)
T ss_pred CCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHc----CCCEEecCCCC
Confidence 567889999999999999999998887643 556678888887 45555554 677766432 7888775421
Q ss_pred ------CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee---eEEecccchh----HHHHHHHHHHcCceeEE
Q psy17416 76 ------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG---FALNRIHGLI----GQAWAMIFASAGYKVSL 142 (290)
Q Consensus 76 ------~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g---f~~nri~G~~----g~~ia~~~~~~G~~V~l 142 (290)
...++++.| .++++++.+..+++.+|+.++.+....+| ++.|+++..+ ..++.....+.|
T Consensus 122 ~~~~a~~g~l~i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G----- 194 (291)
T TIGR01505 122 GEIGAIEGTLSIMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG----- 194 (291)
T ss_pred CHHHHhcCCEEEEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 234577777 47899999999999999999988444555 3667665433 222333333444
Q ss_pred ecCCHHHHHHHHH
Q psy17416 143 YDVLSEQIENAKN 155 (290)
Q Consensus 143 ~d~~~e~l~~a~~ 155 (290)
.+++.+.+++.
T Consensus 195 --id~~~~~~~l~ 205 (291)
T TIGR01505 195 --VDPVRVRQALR 205 (291)
T ss_pred --CCHHHHHHHHh
Confidence 77888777765
No 84
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.65 E-value=9.3e-08 Score=86.81 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=85.4
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..+|..++..|+ +|.++|++++.. ++... . +.... .......+++.++|++ ++++||+||
T Consensus 6 aG~vG~~ia~~la~~~l~eV~L~Di~e~~~-~g~~~--d-l~~~~---------~~~~~~~~I~~t~d~~-~l~dADiVI 71 (300)
T cd01339 6 AGNVGATLAQLLALKELGDVVLLDIVEGLP-QGKAL--D-ISQAA---------PILGSDTKVTGTNDYE-DIAGSDVVV 71 (300)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEEeCCCcHH-HHHHH--H-HHHhh---------hhcCCCeEEEEcCCHH-HhCCCCEEE
Confidence 68999999999998876 999999997643 33321 1 11110 0011124666677776 589999999
Q ss_pred Ecc--------------ccchHHHHHHHHHHhhhCCCCcE-EEeCCCCcCHHHHhccCCC-CCcEEEec
Q psy17416 201 ESV--------------PEILQIKHQVYRAIDIFMSSNTI-LSSSTSSFLPSVLSEHSTH-RSQFIVAH 253 (290)
Q Consensus 201 eav--------------pe~~~~k~~~~~~l~~~~~~~~i-i~s~ts~~~~~~la~~~~~-~~r~ig~H 253 (290)
+++ +++.++++++++++.+.++++.+ ++||.+.+....+.+.... |.|++|+-
T Consensus 72 it~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300)
T cd01339 72 ITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300)
T ss_pred EecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence 866 88999999999999999988874 4588887777777766664 46888776
No 85
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.65 E-value=1.9e-07 Score=89.60 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=94.8
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh--
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC-- 192 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~-- 192 (290)
||++ +|.||..+|..+++.|++|.+||++++..++..+... .| ..+....++++.
T Consensus 3 G~IG---LG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~--------~g------------~~~~~~~s~~e~v~ 59 (467)
T TIGR00873 3 GVIG---LAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHA--------KG------------KKIVGAYSIEEFVQ 59 (467)
T ss_pred EEEe---eHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhcc--------CC------------CCceecCCHHHHHh
Confidence 6776 8999999999999999999999999998776554100 00 011223444443
Q ss_pred -cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCC-CCCcEEEeccCCCCC---CCCeEE
Q psy17416 193 -LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHST-HRSQFIVAHPVNPPY---FIPLVE 265 (290)
Q Consensus 193 -l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~-~~~r~ig~Hf~~p~~---~~~lvE 265 (290)
+.++|+||.++|....+ .+++.++.+.++++.+|+..+++...+ ..+..+. +-.+|+++.....+. ..+ .-
T Consensus 60 ~l~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~i 137 (467)
T TIGR00873 60 SLERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SI 137 (467)
T ss_pred hcCCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cC
Confidence 35799999999986555 457788989999998887444333222 3333332 223455554422211 111 11
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 266 IVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 266 vv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++. .++++++++..+++.++.
T Consensus 138 m~G---G~~~a~~~~~p~L~~ia~ 158 (467)
T TIGR00873 138 MPG---GSAEAWPLVAPIFQKIAA 158 (467)
T ss_pred CCC---CCHHHHHHHHHHHHHHhh
Confidence 233 388999999999999875
No 86
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.65 E-value=4.7e-07 Score=81.53 Aligned_cols=143 Identities=18% Similarity=0.139 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHcCceeEEecCCHHHHHH-HHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcc
Q psy17416 125 IGQAWAMIFASAGYKVSLYDVLSEQIEN-AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV 203 (290)
Q Consensus 125 ~g~~ia~~~~~~G~~V~l~d~~~e~l~~-a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieav 203 (290)
-|..+|..+.+.||+|.+||++++..+. ..+.+ .+. +....++..+++++||+||.|+
T Consensus 31 gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~L-------aea--------------GA~~AaS~aEAAa~ADVVIL~L 89 (341)
T TIGR01724 31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKV-------EDA--------------GVKVVSDDKEAAKHGEIHVLFT 89 (341)
T ss_pred CHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHH-------HHC--------------CCeecCCHHHHHhCCCEEEEec
Confidence 3788999999999999999999876532 11111 111 1234567788899999999999
Q ss_pred ccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCC------CC-CcEEEeccCCCCCC-CCeEEEecC------
Q psy17416 204 PEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST------HR-SQFIVAHPVNPPYF-IPLVEIVPA------ 269 (290)
Q Consensus 204 pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~------~~-~r~ig~Hf~~p~~~-~~lvEvv~~------ 269 (290)
|..-.+ ++++..+.+.++++++++ ++|++++..+...+. +. -.+..+||-.-|-. ..-.=++.+
T Consensus 90 Pd~aaV-~eVl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~ 167 (341)
T TIGR01724 90 PFGKGT-FSIARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGK 167 (341)
T ss_pred CCHHHH-HHHHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeecccccccc
Confidence 966555 445577888899999885 677777776554332 22 35667787543321 111112222
Q ss_pred CCCCHHHHHHHHHHHHHcCCC
Q psy17416 270 AWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 270 ~~t~~e~~~~~~~~~~~lgk~ 290 (290)
...++|.++++.++.+..||+
T Consensus 168 ~~A~ee~i~~~~el~~~~~~~ 188 (341)
T TIGR01724 168 EMATEEQISKCVELAKSTGKK 188 (341)
T ss_pred ccCCHHHHHHHHHHHHHhCCC
Confidence 355899999999999999984
No 87
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.63 E-value=6.5e-07 Score=81.81 Aligned_cols=153 Identities=22% Similarity=0.232 Sum_probs=95.8
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
++++ +|.||..++..+++.|++|.+|+++++.++...+. +.............++..+++++++++
T Consensus 5 ~iiG---~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 5 AVLG---AGSWGTALAIVLARNGHDVTLWARDPEQAAEINAD-----------RENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred EEEC---CCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc-----------CcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 4555 79999999999999999999999999877654441 110000011111124455678877788
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH-------HHhccCCCCCcEEEeccCCCCC-------C
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-------VLSEHSTHRSQFIVAHPVNPPY-------F 260 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~-------~la~~~~~~~r~ig~Hf~~p~~-------~ 260 (290)
+||+||.|+|.. ....++.++.+.+++++++++.++++..+ .+.+......... -...|.. .
T Consensus 71 ~~D~vi~~v~~~--~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~--~~~~P~~~~~~~~g~ 146 (325)
T PRK00094 71 DADLILVAVPSQ--ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIA--VLSGPSFAKEVARGL 146 (325)
T ss_pred CCCEEEEeCCHH--HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceE--EEECccHHHHHHcCC
Confidence 999999999974 47788899999989999887655444432 2222222100110 0111211 1
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcC
Q psy17416 261 IPLVEIVPAAWTSERVITRTREIMTEIG 288 (290)
Q Consensus 261 ~~lvEvv~~~~t~~e~~~~~~~~~~~lg 288 (290)
..++++.. .+.+.++++.++++..|
T Consensus 147 ~~~~~~~~---~~~~~~~~~~~~l~~~~ 171 (325)
T PRK00094 147 PTAVVIAS---TDEELAERVQELFHSPY 171 (325)
T ss_pred CcEEEEEe---CCHHHHHHHHHHhCCCC
Confidence 12344433 37888999999998766
No 88
>PLN02712 arogenate dehydrogenase
Probab=98.63 E-value=9.5e-07 Score=88.29 Aligned_cols=144 Identities=16% Similarity=0.057 Sum_probs=94.6
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+|+ .|.||..++..+.+.|++|..||++... +.+.+ .| +...+++++.+
T Consensus 55 IgIIG---~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~-----------~G--------------v~~~~d~~e~~ 105 (667)
T PLN02712 55 IAIIG---FGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARS-----------LG--------------VSFFLDPHDLC 105 (667)
T ss_pred EEEEc---cCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHH-----------cC--------------CEEeCCHHHHh
Confidence 45565 7999999999999999999999998542 22211 11 12245666644
Q ss_pred -ccCcEEEEccccchHHHHHHHHHHh-hhCCCCcEEEeCCCCcC---HHHHhccCCCCCcEEEeccCCCCCCC-----Ce
Q psy17416 194 -EDAIFIQESVPEILQIKHQVYRAID-IFMSSNTILSSSTSSFL---PSVLSEHSTHRSQFIVAHPVNPPYFI-----PL 263 (290)
Q Consensus 194 -~~aDlVieavpe~~~~k~~~~~~l~-~~~~~~~ii~s~ts~~~---~~~la~~~~~~~r~ig~Hf~~p~~~~-----~l 263 (290)
.++|+||.|+|. ..-..++.++. +.++++++|+.- ++.. +..+...++...+|+|+||+..+... ..
T Consensus 106 ~~~aDvViLavP~--~~~~~vl~~l~~~~l~~g~iVvDv-~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~ 182 (667)
T PLN02712 106 ERHPDVILLCTSI--ISTENVLKSLPLQRLKRNTLFVDV-LSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGL 182 (667)
T ss_pred hcCCCEEEEcCCH--HHHHHHHHhhhhhcCCCCeEEEEC-CCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccC
Confidence 569999999994 45678888875 568889988633 3333 33444444433479999997776411 11
Q ss_pred EEEe-----cCCCCCHHHHHHHHHHHHHcCC
Q psy17416 264 VEIV-----PAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 264 vEvv-----~~~~t~~e~~~~~~~~~~~lgk 289 (290)
..+. +.+....+.++.+.++|+.+|.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa 213 (667)
T PLN02712 183 RFVYEKVRIGNEELRVSRCKSFLEVFEREGC 213 (667)
T ss_pred cEEEeeccCCCccccHHHHHHHHHHHHHcCC
Confidence 1222 2333345667888899999985
No 89
>PLN02858 fructose-bisphosphate aldolase
Probab=98.62 E-value=3.3e-07 Score=97.97 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=104.1
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|||+ +|.||..||..+.+.|++|.+||++++..++..+ .| ....+++.++.
T Consensus 7 IGfIG---LG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~-----------~G--------------a~~~~s~~e~a 58 (1378)
T PLN02858 7 VGFVG---LDSLSFELASSLLRSGFKVQAFEISTPLMEKFCE-----------LG--------------GHRCDSPAEAA 58 (1378)
T ss_pred EEEEc---hhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC--------------CeecCCHHHHH
Confidence 58887 8999999999999999999999999987766544 11 12357788888
Q ss_pred ccCcEEEEccccchHHHHHHH--HHHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEE--eccCCCCC-------
Q psy17416 194 EDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIV--AHPVNPPY------- 259 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig--~Hf~~p~~------- 259 (290)
++||+||.|+|..-.++..++ ..+.+.++++.+++ +.|+++++ ++++.+... | .+|...|.
T Consensus 59 ~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iiv-d~STi~p~~~~~la~~l~~~----g~~~~~lDaPVsGg~~~A 133 (1378)
T PLN02858 59 KDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVIL-IRSTILPLQLQKLEKKLTER----KEQIFLVDAYVSKGMSDL 133 (1378)
T ss_pred hcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEE-ECCCCCHHHHHHHHHHHHhc----CCceEEEEccCcCCHHHH
Confidence 999999999999988876665 35777788888775 44444444 454444322 3 44543332
Q ss_pred -CCCeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 260 -FIPLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 260 -~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
...|.-++.| +++.++++..+++.+|++
T Consensus 134 ~~G~L~imvGG---~~~~~~~~~p~l~~~g~~ 162 (1378)
T PLN02858 134 LNGKLMIIASG---RSDAITRAQPFLSAMCQK 162 (1378)
T ss_pred hcCCeEEEEcC---CHHHHHHHHHHHHHhcCc
Confidence 2447777777 889999999999999973
No 90
>PRK07680 late competence protein ComER; Validated
Probab=98.61 E-value=1.4e-06 Score=77.94 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=102.1
Q ss_pred eeEEecccchhHHHHHHHHHHcCc----eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchH
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGY----KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 190 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~----~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~ 190 (290)
||++ .|.||..++..+.+.|+ +|.+++++++..++..+ . . .++..+.+..
T Consensus 4 ~iIG---~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~----~------~-------------~g~~~~~~~~ 57 (273)
T PRK07680 4 GFIG---TGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKE----R------Y-------------PGIHVAKTIE 57 (273)
T ss_pred EEEC---ccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHH----H------c-------------CCeEEECCHH
Confidence 5666 79999999999988883 79999999977644322 0 0 0123355666
Q ss_pred hhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCC-CCeEEEecC
Q psy17416 191 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-IPLVEIVPA 269 (290)
Q Consensus 191 ~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~-~~lvEvv~~ 269 (290)
+.+.++|+||.|+|... -.++++++.+.++++.+|++-+++++++.+...+.. +.+-.+|-.+... .-..=++.+
T Consensus 58 ~~~~~aDiVilav~p~~--~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~--~~~r~~p~~~~~~~~G~t~~~~g 133 (273)
T PRK07680 58 EVISQSDLIFICVKPLD--IYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPC--QVARIIPSITNRALSGASLFTFG 133 (273)
T ss_pred HHHHhCCEEEEecCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC--CEEEECCChHHHHhhccEEEeeC
Confidence 77889999999998444 568888888888888888888888998888876642 3333333111100 112223456
Q ss_pred CCCCHHHHHHHHHHHHHcCC
Q psy17416 270 AWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 270 ~~t~~e~~~~~~~~~~~lgk 289 (290)
...+++..+.+.++++.+|+
T Consensus 134 ~~~~~~~~~~~~~ll~~~G~ 153 (273)
T PRK07680 134 SRCSEEDQQKLERLFSNIST 153 (273)
T ss_pred CCCCHHHHHHHHHHHHcCCC
Confidence 67788889999999999985
No 91
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.59 E-value=8.1e-07 Score=80.69 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=92.7
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
||++ +|.||..++..+.+.|++|.+||++++..++..+ .| ....+++++.++
T Consensus 4 g~IG---lG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-----------~g--------------~~~~~~~~e~~~ 55 (301)
T PRK09599 4 GMIG---LGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE-----------EG--------------ATGADSLEELVA 55 (301)
T ss_pred EEEc---ccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------CC--------------CeecCCHHHHHh
Confidence 5666 8999999999999999999999999987765433 11 123456666555
Q ss_pred c---CcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC--HHHHhccCCCCCcEEEeccCCCCCCC-------C
Q psy17416 195 D---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTHRSQFIVAHPVNPPYFI-------P 262 (290)
Q Consensus 195 ~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~la~~~~~~~r~ig~Hf~~p~~~~-------~ 262 (290)
. +|+||.++|....+ .+++..+.+.++++.+++..+++.+ ...++..+... |.+|...|... .
T Consensus 56 ~~~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~dapvsG~~~~a~~g 130 (301)
T PRK09599 56 KLPAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVDVGTSGGVWGLERG 130 (301)
T ss_pred hcCCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEeCCCCcCHHHHhcC
Confidence 4 69999999976443 4566778888888887774332222 22444444322 44444332111 1
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+.-++.| +++++++++.+++.+|+
T Consensus 131 ~~~~~gG---~~~~~~~~~~~l~~~~~ 154 (301)
T PRK09599 131 YCLMIGG---DKEAVERLEPIFKALAP 154 (301)
T ss_pred CeEEecC---CHHHHHHHHHHHHHHcc
Confidence 2333444 89999999999999986
No 92
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.57 E-value=2.7e-07 Score=82.95 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=83.2
Q ss_pred hhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCC-----------
Q psy17416 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY----------- 74 (290)
Q Consensus 6 ~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~----------- 74 (290)
+++++||+||.|+|++... ++++++...+++++++ +++++.+...+.....++.+|+|+|++....
T Consensus 53 ~~~~~aDlVilavp~~~~~--~~~~~l~~~l~~~~ii-~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~l 129 (279)
T PRK07417 53 SLLKDCDLVILALPIGLLL--PPSEQLIPALPPEAIV-TDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGL 129 (279)
T ss_pred hHhcCCCEEEEcCCHHHHH--HHHHHHHHhCCCCcEE-EeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHH
Confidence 4689999999999988765 4789999999999888 7777788887777666667899999876543
Q ss_pred -CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 75 -FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 75 -~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
.-+..-+++++.++++.++.+.++++.+|+.++.+.
T Consensus 130 f~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~ 166 (279)
T PRK07417 130 FKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYTAD 166 (279)
T ss_pred hCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 123344788899999999999999999999998774
No 93
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.57 E-value=1.7e-07 Score=85.79 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=88.8
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..+|..++..|+ ++.++|++++... +. .++..... .......++..++|++ ++++||+||
T Consensus 14 aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~-~~-----~ld~~~~~-------~~~~~~~~I~~~~d~~-~l~~aDiVI 79 (321)
T PTZ00082 14 SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ-GK-----ALDISHSN-------VIAGSNSKVIGTNNYE-DIAGSDVVI 79 (321)
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEeCCCchhh-HH-----HHHHHhhh-------hccCCCeEEEECCCHH-HhCCCCEEE
Confidence 79999999999999996 9999999998642 21 11111110 0011123677678886 689999999
Q ss_pred Ecc-------------------ccchHHHHHHHHHHhhhCCCC-cEEEeCCCCcCHHHHhccCCCC-CcEEEec
Q psy17416 201 ESV-------------------PEILQIKHQVYRAIDIFMSSN-TILSSSTSSFLPSVLSEHSTHR-SQFIVAH 253 (290)
Q Consensus 201 eav-------------------pe~~~~k~~~~~~l~~~~~~~-~ii~s~ts~~~~~~la~~~~~~-~r~ig~H 253 (290)
++. +++..+++++++++.+++++. .|++||.+.+....+......| .|++|++
T Consensus 80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 955 778999999999999999775 5566999999888888777765 8999998
No 94
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.55 E-value=1.9e-07 Score=87.74 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=65.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH----HHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH----TLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAI 197 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~----~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aD 197 (290)
+|.||..+|..++. |++|++||++++.+++..+.... .++++... ...+++.+++..+++++||
T Consensus 8 lGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~-----------~~~~l~~t~~~~~~~~~ad 75 (388)
T PRK15057 8 TGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQS-----------DKIHFNATLDKNEAYRDAD 75 (388)
T ss_pred CCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHh-----------CCCcEEEecchhhhhcCCC
Confidence 79999999988875 99999999999998877652211 11111100 1123445566777789999
Q ss_pred EEEEccccchHHH---------HHHHHHHhhhCCCCcEEE
Q psy17416 198 FIQESVPEILQIK---------HQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 198 lVieavpe~~~~k---------~~~~~~l~~~~~~~~ii~ 228 (290)
+||+|+|++++.| .++++.+.+ ++++.+++
T Consensus 76 ~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV 114 (388)
T PRK15057 76 YVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMV 114 (388)
T ss_pred EEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEE
Confidence 9999999986544 355567776 57777765
No 95
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.52 E-value=2.7e-06 Score=80.57 Aligned_cols=156 Identities=18% Similarity=0.191 Sum_probs=97.0
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCh-hhh------hcccccCC
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSP-EEQ------FGLISGTP 187 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~-~~~------~~~i~~~~ 187 (290)
|+++ +|.||..+|..+++.|++|.+||++++.++...+ |...-..+. .+. .++++.++
T Consensus 4 ~vIG---lG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~------------g~~~~~e~~l~~~~~~~~~~g~l~~~~ 68 (411)
T TIGR03026 4 AVIG---LGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNK------------GKSPIYEPGLDELLAKALAAGRLRATT 68 (411)
T ss_pred EEEC---CCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhc------------CCCCCCCCCHHHHHHHhhhcCCeEEEC
Confidence 4555 7999999999999999999999999988765432 110000000 111 13466778
Q ss_pred chHhhcccCcEEEEccccchH--------HHHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhccC-C-------CCCc
Q psy17416 188 VLRECLEDAIFIQESVPEILQ--------IKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHS-T-------HRSQ 248 (290)
Q Consensus 188 ~l~~~l~~aDlVieavpe~~~--------~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~~~-~-------~~~r 248 (290)
++.+++++||+||.|+|.... ......+.+.+.++++++++. .|+.++. ++.... . ..+-
T Consensus 69 ~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~ 147 (411)
T TIGR03026 69 DYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDF 147 (411)
T ss_pred CHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCc
Confidence 888889999999999998743 345666788888899987762 3333222 332111 1 1122
Q ss_pred EEEeccCC--CCCCCC-eE---EEecCCCCCHHHHHHHHHHHHHcC
Q psy17416 249 FIVAHPVN--PPYFIP-LV---EIVPAAWTSERVITRTREIMTEIG 288 (290)
Q Consensus 249 ~ig~Hf~~--p~~~~~-lv---Evv~~~~t~~e~~~~~~~~~~~lg 288 (290)
.+..+|-. +-.... +. -++.| .+++..+++.++++.++
T Consensus 148 ~v~~~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~ 191 (411)
T TIGR03026 148 YLAYNPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPII 191 (411)
T ss_pred eEEECCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhc
Confidence 34555411 111000 00 13333 48999999999999986
No 96
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.48 E-value=4.5e-06 Score=74.99 Aligned_cols=146 Identities=12% Similarity=0.047 Sum_probs=103.2
Q ss_pred eeEEecccchhHHHHHHHHHHcC----ceeEEecCCHHH-HHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAG----YKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G----~~V~l~d~~~e~-l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
||++ .|.||..++..+.+.| ++|.+|+++++. .+.... . . .....+.+.
T Consensus 5 ~iIG---~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~----~------~-------------~~~~~~~~~ 58 (277)
T PRK06928 5 GFIG---YGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYD----K------Y-------------PTVELADNE 58 (277)
T ss_pred EEEC---ccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHH----H------c-------------CCeEEeCCH
Confidence 5665 7999999999999888 689999987542 211111 0 0 011234566
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-eEEEec
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVP 268 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-lvEvv~ 268 (290)
.+++.++|+||.|+|... -.++++++.+.++++++|+|-..+++.+++.+.++. .+++=.=|--|..... ..=+++
T Consensus 59 ~e~~~~aDvVilavpp~~--~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVPPLA--VLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 677889999999999444 668889998888888888899999999999887643 2343333322222221 233566
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q psy17416 269 AAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lgk 289 (290)
++..+++..+.+..+++.+|+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~ 156 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSH 156 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCC
Confidence 778899999999999999997
No 97
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.47 E-value=6.5e-07 Score=81.99 Aligned_cols=118 Identities=19% Similarity=0.167 Sum_probs=86.5
Q ss_pred cchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..++..++..| .++.++|++++..+ +.. ++.... ........+++.+++++ ++++||+||
T Consensus 13 aG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~-----lDl~~~-------~~~~~~~~~i~~~~d~~-~l~~ADiVV 78 (319)
T PTZ00117 13 AGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKA-----LDLKHF-------STLVGSNINILGTNNYE-DIKDSDVVV 78 (319)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHH-----HHHhhh-------ccccCCCeEEEeCCCHH-HhCCCCEEE
Confidence 6999999999999888 58999999987643 222 111000 00011123566667888 689999999
Q ss_pred Ecc--ccch------------HHHHHHHHHHhhhCCCC-cEEEeCCCCcCHHHHhccCCCC-CcEEEec
Q psy17416 201 ESV--PEIL------------QIKHQVYRAIDIFMSSN-TILSSSTSSFLPSVLSEHSTHR-SQFIVAH 253 (290)
Q Consensus 201 eav--pe~~------------~~k~~~~~~l~~~~~~~-~ii~s~ts~~~~~~la~~~~~~-~r~ig~H 253 (290)
++. |++. .+++++.+++.+++++. .|++||.+.+....+......| .|++|++
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 999 7766 88999999999998777 4555888888777777766666 8999888
No 98
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.44 E-value=8.5e-07 Score=81.81 Aligned_cols=103 Identities=17% Similarity=0.096 Sum_probs=77.7
Q ss_pred cchhHHHHHHHHHHcC--------ceeEEecC-----CHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCc
Q psy17416 122 HGLIGQAWAMIFASAG--------YKVSLYDV-----LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV 188 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G--------~~V~l~d~-----~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~ 188 (290)
+|.||.++|..++..| ++|.+|++ +++..+...+..+ -..+++...+.++++.++|
T Consensus 7 aG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~-----------n~~ylpgi~Lp~~i~at~d 75 (342)
T TIGR03376 7 SGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHE-----------NVKYLPGIKLPANLVAVPD 75 (342)
T ss_pred cCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCC-----------CccccCCCcCCCCeEEECC
Confidence 6999999999999989 99999998 3333222222111 1112223334567888999
Q ss_pred hHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH
Q psy17416 189 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS 237 (290)
Q Consensus 189 l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~ 237 (290)
+++++.+||+||.|+|.+. -+++++++.+.++++.+++|.++++..+
T Consensus 76 l~eal~~ADiIIlAVPs~~--i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 76 LVEAAKGADILVFVIPHQF--LEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred HHHHHhcCCEEEEECChHH--HHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 9999999999999999666 7899999999999999888877777654
No 99
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.44 E-value=1.2e-06 Score=80.57 Aligned_cols=152 Identities=16% Similarity=0.086 Sum_probs=89.9
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
++++ +|.||..+|..+++.|++|.+|+++++..+...+..++. .. ++......++..+++++++++
T Consensus 8 ~iIG---~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~--------~~---~~g~~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 8 AVLG---AGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR--------EY---LPGVALPAELYPTADPEEALA 73 (328)
T ss_pred EEEC---cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc--------cc---CCCCcCCCCeEEeCCHHHHHc
Confidence 4554 799999999999999999999999988765544321111 00 001111223555678888889
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC-----HHHHhccCCC----CCcEEEe-ccCCCCC-C-CC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL-----PSVLSEHSTH----RSQFIVA-HPVNPPY-F-IP 262 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-----~~~la~~~~~----~~r~ig~-Hf~~p~~-~-~~ 262 (290)
++|+||.|+|+.. -++++ +.+++++++++.++++. ...++..+.. ...+++. .+..... . ..
T Consensus 74 ~aD~Vi~~v~~~~--~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~ 147 (328)
T PRK14618 74 GADFAVVAVPSKA--LRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPA 147 (328)
T ss_pred CCCEEEEECchHH--HHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCe
Confidence 9999999999774 23444 45667777776666554 3344443321 1112211 0000000 0 11
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+..+.. .+++.++++..+++..|.
T Consensus 148 ~~~~~~---~~~~~~~~v~~ll~~~~~ 171 (328)
T PRK14618 148 ATVVAS---PEPGLARRVQAAFSGPSF 171 (328)
T ss_pred EEEEEe---CCHHHHHHHHHHhCCCcE
Confidence 222332 378889999999987764
No 100
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.42 E-value=1e-06 Score=84.24 Aligned_cols=140 Identities=17% Similarity=0.194 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhccc---CcEEEE
Q psy17416 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED---AIFIQE 201 (290)
Q Consensus 125 ~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~---aDlVie 201 (290)
||..+|..++++|++|.+||++++..+...+. .|. + .++....++++.++. +|+||.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~--~--------~g~~~~~s~~e~v~~l~~~~~Ii~ 60 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK--G--------KKIVPAYTLEEFVASLEKPRKILL 60 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC--C--------CCeEeeCCHHHHHhhCCCCCEEEE
Confidence 78999999999999999999999987765441 010 0 123456778877664 899999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEe-CCCCcCH-HHHhccCCCC-CcEEEeccCCCC---CCCCeEEEecCCCCCHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSS-STSSFLP-SVLSEHSTHR-SQFIVAHPVNPP---YFIPLVEIVPAAWTSER 275 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s-~ts~~~~-~~la~~~~~~-~r~ig~Hf~~p~---~~~~lvEvv~~~~t~~e 275 (290)
++|..-.++ +++..|.+.+.++.||+- +|+...- .+.+..+... .+|+++-....+ ...+ .-++.| +++
T Consensus 61 mv~~g~~v~-~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG---~~~ 135 (459)
T PRK09287 61 MVKAGAPVD-AVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGG---QKE 135 (459)
T ss_pred ECCCchHHH-HHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeC---CHH
Confidence 999887764 455788889999988873 3333332 2444444322 234333322111 1122 224445 799
Q ss_pred HHHHHHHHHHHcCC
Q psy17416 276 VITRTREIMTEIGM 289 (290)
Q Consensus 276 ~~~~~~~~~~~lgk 289 (290)
+++++..+++.++.
T Consensus 136 a~~~~~piL~~ia~ 149 (459)
T PRK09287 136 AYELVAPILEKIAA 149 (459)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999875
No 101
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.42 E-value=9.1e-06 Score=74.38 Aligned_cols=144 Identities=16% Similarity=0.120 Sum_probs=103.4
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHH-HHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQI-ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l-~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
-||++ .|.||.++|..+...|++|.+++++.... +.+.+ .| +. ..+.+++
T Consensus 20 IgIIG---~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~-----------~G--------------~~-~~s~~ea 70 (330)
T PRK05479 20 VAIIG---YGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEA-----------DG--------------FE-VLTVAEA 70 (330)
T ss_pred EEEEe---eHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHH-----------CC--------------Ce-eCCHHHH
Confidence 46776 89999999999999999999887765432 22111 11 11 2367788
Q ss_pred cccCcEEEEccccchHHHHHHH-HHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-e-------
Q psy17416 193 LEDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-L------- 263 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-l------- 263 (290)
+++||+|+.++|... ...++ +++.+.++++++| +-.+++.+.......+...+++-..|-.|.+..+ .
T Consensus 71 a~~ADVVvLaVPd~~--~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv 147 (330)
T PRK05479 71 AKWADVIMILLPDEV--QAEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGV 147 (330)
T ss_pred HhcCCEEEEcCCHHH--HHHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCc
Confidence 999999999999665 36787 7799999999988 7788888877765555445677777766665211 0
Q ss_pred EEEe-cCCCCCHHHHHHHHHHHHHcCC
Q psy17416 264 VEIV-PAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 264 vEvv-~~~~t~~e~~~~~~~~~~~lgk 289 (290)
-=++ .....+.+..+.+.+++..+|-
T Consensus 148 ~~l~av~~d~t~~a~~~a~~l~~aiG~ 174 (330)
T PRK05479 148 PCLIAVHQDASGNAKDLALAYAKGIGG 174 (330)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 0122 3445568889999999999985
No 102
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.41 E-value=1.4e-06 Score=78.86 Aligned_cols=140 Identities=13% Similarity=0.098 Sum_probs=96.1
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHH--HHHhhcCCCcEEeecCCCCChH---HHhcccCCCCceeeeccCCCCCC-
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF- 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~--~~~~~~~~~~i~~snts~~~~~---~l~~~~~~~~r~~g~hf~~P~~~- 75 (290)
+++++.+++||+||.|+|+...+|.-++. .+...+++++++. |+|+.++. ++++.+..+ |+||..+|-.
T Consensus 50 ~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g 124 (296)
T PRK11559 50 STAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKAK----GIEMLDAPVSG 124 (296)
T ss_pred CCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCC
Confidence 57888899999999999999998877664 3666778899887 55666654 666666432 7888776532
Q ss_pred ------CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeE---Eecccch----hHHHHHHHHHHcCceeEE
Q psy17416 76 ------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFA---LNRIHGL----IGQAWAMIFASAGYKVSL 142 (290)
Q Consensus 76 ------~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~---~nri~G~----~g~~ia~~~~~~G~~V~l 142 (290)
...++++.|. +++.++.+..+++.+|+.++.+....+|+. .|+++-. ...+....+.+.|
T Consensus 125 ~~~~a~~g~l~i~~gg--~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G----- 197 (296)
T PRK11559 125 GEPKAIDGTLSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAG----- 197 (296)
T ss_pred CHHHHhhCcEEEEECC--CHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 1446677774 689999999999999999998843445664 5554322 1223333334445
Q ss_pred ecCCHHHHHHHHH
Q psy17416 143 YDVLSEQIENAKN 155 (290)
Q Consensus 143 ~d~~~e~l~~a~~ 155 (290)
.+++.+.+++.
T Consensus 198 --i~~~~~~~~l~ 208 (296)
T PRK11559 198 --VNPDLVYQAIR 208 (296)
T ss_pred --CCHHHHHHHHh
Confidence 66777666554
No 103
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.41 E-value=6.9e-06 Score=72.11 Aligned_cols=146 Identities=13% Similarity=0.091 Sum_probs=102.3
Q ss_pred eeeEEecccchhHHHHHHHHHHcCc---e-eEEecC-CHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGY---K-VSLYDV-LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV 188 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~---~-V~l~d~-~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~ 188 (290)
-|+++ .|.||..++..+.+.|. . +..+++ +++..++..+ . . ++..+.+
T Consensus 7 I~iIG---~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~----~------~--------------~~~~~~~ 59 (245)
T PRK07634 7 ILFIG---AGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQA----R------Y--------------NVSTTTD 59 (245)
T ss_pred EEEEC---cCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHH----H------c--------------CcEEeCC
Confidence 35665 79999999998887763 2 666776 4555433222 0 0 1123467
Q ss_pred hHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCe-EEEe
Q psy17416 189 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPL-VEIV 267 (290)
Q Consensus 189 l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~l-vEvv 267 (290)
+++++.++|+||.|+|... -+++++++.+.++ +.+|+|.+.+++++.+...++...+++-.||-.+.....- -=++
T Consensus 60 ~~~~~~~~DiViiavp~~~--~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~ 136 (245)
T PRK07634 60 WKQHVTSVDTIVLAMPPSA--HEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYT 136 (245)
T ss_pred hHHHHhcCCEEEEecCHHH--HHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEe
Confidence 7778899999999999654 6788888887766 5678899999999999888765556666777333222111 1134
Q ss_pred cCCCCCHHHHHHHHHHHHHcCC
Q psy17416 268 PAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 268 ~~~~t~~e~~~~~~~~~~~lgk 289 (290)
.+...+++..+.+.++++.+|+
T Consensus 137 ~~~~~~~~~~~~v~~lf~~~G~ 158 (245)
T PRK07634 137 MGQSVNETHKETLQLILKGIGT 158 (245)
T ss_pred eCCCCCHHHHHHHHHHHHhCCC
Confidence 4567789999999999999996
No 104
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.40 E-value=7.9e-06 Score=72.51 Aligned_cols=139 Identities=14% Similarity=0.113 Sum_probs=94.3
Q ss_pred eeEEecccchhHHHHHHHHHHcCce---eEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYK---VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~---V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
||++ .|.||..++..+.+.|+. +.+++++++..++..+.. .....+.+..+
T Consensus 4 giIG---~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~-----------------------~~~~~~~~~~~ 57 (258)
T PRK06476 4 GFIG---TGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERF-----------------------PKVRIAKDNQA 57 (258)
T ss_pred EEEC---cCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHc-----------------------CCceEeCCHHH
Confidence 6676 799999999999988864 478999987765433310 01223467777
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-eEEEecCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAA 270 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-lvEvv~~~ 270 (290)
+++++|+||.|+|. ....+++.++. +.++.+++|...+++++.+........+.+-.+|..|..... +.-++++
T Consensus 58 ~~~~aDvVilav~p--~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~- 132 (258)
T PRK06476 58 VVDRSDVVFLAVRP--QIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP- 132 (258)
T ss_pred HHHhCCEEEEEeCH--HHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC-
Confidence 78899999999994 33567777763 467788888889999999988776444555555544332221 2223332
Q ss_pred CCCHHHHHHHHHHHHHcCCC
Q psy17416 271 WTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 271 ~t~~e~~~~~~~~~~~lgk~ 290 (290)
.+.+.++++.+|+.
T Consensus 133 ------~~~~~~l~~~lG~~ 146 (258)
T PRK06476 133 ------DPFVAALFDALGTA 146 (258)
T ss_pred ------HHHHHHHHHhcCCc
Confidence 15789999999863
No 105
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.40 E-value=9.9e-07 Score=81.99 Aligned_cols=106 Identities=18% Similarity=0.117 Sum_probs=78.7
Q ss_pred cchhHHHHHHHHHHcC-------ceeEEecCCHHH-HHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 122 HGLIGQAWAMIFASAG-------YKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-------~~V~l~d~~~e~-l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
.|.||.++|..++..| ++|.+|.++++. -.+..+.+.+ .+.-..+++...+.++|..++|+++++
T Consensus 19 aG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~-------~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 19 SGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINT-------KHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHh-------cCCCcccCCCCcCCCceEEecCHHHHH
Confidence 6999999999999887 799999999863 1111111111 122223344555678899999999999
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhh--hCCCCcEEEeCCCCcCH
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDI--FMSSNTILSSSTSSFLP 236 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~--~~~~~~ii~s~ts~~~~ 236 (290)
++||+|+.|+|... -+++++++.+ .++++++++|-++++..
T Consensus 92 ~~aDiIvlAVPsq~--l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 92 EDADLLIFVIPHQF--LESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred hcCCEEEEEcChHH--HHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 99999999999666 8899999998 78888888876666553
No 106
>PLN02858 fructose-bisphosphate aldolase
Probab=98.39 E-value=2.2e-06 Score=91.69 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=99.7
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-||++ +|.||..+|..+...|++|.+||++++..++... .|. ....++.+++
T Consensus 327 IGfIG---lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~Ga--------------~~~~s~~e~~ 378 (1378)
T PLN02858 327 IGFIG---LGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFEN-----------AGG--------------LAGNSPAEVA 378 (1378)
T ss_pred EEEEC---chHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cCC--------------eecCCHHHHH
Confidence 37776 8999999999999999999999999987765433 111 1246777788
Q ss_pred ccCcEEEEccccchHHHHHHHH--HHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCC--------CC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPP--------YF 260 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~--------~~ 260 (290)
++||+||.|+|....++.-++. .+.+.++++.+++ +.|+.++. ++++.+.. .--|.+|...| ..
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivV-d~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~ 455 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIV-LSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAM 455 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhc
Confidence 9999999999988877666553 3556677888776 44444443 44444332 00245554433 22
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 261 IPLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 261 ~~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
..+.-++.| +++.++++..+++.+|++
T Consensus 456 G~L~imvgG---~~~~~~~~~plL~~lg~~ 482 (1378)
T PLN02858 456 GTLTIMASG---TDEALKSAGSVLSALSEK 482 (1378)
T ss_pred CCceEEEEC---CHHHHHHHHHHHHHHhCc
Confidence 346667777 788999999999999873
No 107
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.34 E-value=3.4e-06 Score=77.85 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=83.7
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHH----hcccCCCCceeeeccCCCCCC--
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL----SEHSTHRSQFIVAHPVNPPYF-- 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l----~~~~~~~~r~~g~hf~~P~~~-- 75 (290)
+|..+++++||+||.|+|... ...+++..+-..+++++++. |+|+.+...+ +..+..+.+.+|+||++|...
T Consensus 73 sd~~eaa~~ADvVIlaVP~~~-~v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G 150 (342)
T PRK12557 73 SDDAEAAKHGEIHILFTPFGK-KTVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG 150 (342)
T ss_pred CCHHHHHhCCCEEEEECCCcH-HHHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccCeeecCCccccc
Confidence 577788899999999999654 56778889998899998877 6667776644 355555667889999988764
Q ss_pred --CCeeeEeeCCCC------CHHHHHHHHHHHHHhCCccEEE
Q psy17416 76 --IPLVEIVPAAWT------SERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 76 --~~lvEiv~~~~t------~~~~~~~~~~~~~~lgk~~v~v 109 (290)
..-++++.+..| +++.++.+..++..+|+.++.+
T Consensus 151 ae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~ 192 (342)
T PRK12557 151 TPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVV 192 (342)
T ss_pred cccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 233568877655 8999999999999999988776
No 108
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.32 E-value=1.6e-05 Score=73.13 Aligned_cols=93 Identities=23% Similarity=0.268 Sum_probs=72.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||+.+|..+...|++|..||++++.... .+.+..++++++++||+|+.
T Consensus 154 ~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~-----------------------------~~~~~~~l~ell~~aDiVil 204 (330)
T PRK12480 154 TGRIGAATAKIYAGFGATITAYDAYPNKDLD-----------------------------FLTYKDSVKEAIKDADIISL 204 (330)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEeCChhHhhh-----------------------------hhhccCCHHHHHhcCCEEEE
Confidence 7999999999999999999999998753210 01124578889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHS 243 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~ 243 (290)
++|...+.+..+.+++.+.++++++++..+.+..+. .+.+.+
T Consensus 205 ~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL 248 (330)
T PRK12480 205 HVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAV 248 (330)
T ss_pred eCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHH
Confidence 999998888888888889999999998655555544 444444
No 109
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.30 E-value=3.2e-06 Score=76.93 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=79.0
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..+|..++..|+ +|.++|++++.+......+.... .......+++.+++++ ++++||+||
T Consensus 10 aG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~-------------~~~~~~~~i~~~~d~~-~~~~aDiVi 75 (307)
T PRK06223 10 AGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA-------------PVEGFDTKITGTNDYE-DIAGSDVVV 75 (307)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh-------------hhcCCCcEEEeCCCHH-HHCCCCEEE
Confidence 58999999999998875 99999998876532111111110 0011124566677886 589999999
Q ss_pred Ecc--------------ccchHHHHHHHHHHhhhCCCCc-EEEeCCCCcCHHHHhccCCC-CCcEEEec
Q psy17416 201 ESV--------------PEILQIKHQVYRAIDIFMSSNT-ILSSSTSSFLPSVLSEHSTH-RSQFIVAH 253 (290)
Q Consensus 201 eav--------------pe~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~~~la~~~~~-~~r~ig~H 253 (290)
.++ .++..+++++++++.+.+++.. |++||.+.+-...+...... |.|++|+-
T Consensus 76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g 144 (307)
T PRK06223 76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA 144 (307)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence 886 4788999999999999987763 33466665544444443333 36777773
No 110
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.29 E-value=1.5e-06 Score=79.27 Aligned_cols=79 Identities=22% Similarity=0.240 Sum_probs=63.7
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||..+|..+...|++|.+|++++. .+++++++
T Consensus 8 ~iiG---~G~~G~~lA~~l~~~G~~V~~~~r~~~--------------------------------------~~~~~~~~ 46 (308)
T PRK14619 8 AILG---AGAWGSTLAGLASANGHRVRVWSRRSG--------------------------------------LSLAAVLA 46 (308)
T ss_pred EEEC---ccHHHHHHHHHHHHCCCEEEEEeCCCC--------------------------------------CCHHHHHh
Confidence 5565 799999999999999999999998752 24456678
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhh-CCCCcEEEeCCCCcCH
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIF-MSSNTILSSSTSSFLP 236 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~-~~~~~ii~s~ts~~~~ 236 (290)
++|+||.|+|.. ..+.+++++.+. +++++++++.++++..
T Consensus 47 ~advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~ 87 (308)
T PRK14619 47 DADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDP 87 (308)
T ss_pred cCCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccC
Confidence 999999999974 477888888774 7888888877765554
No 111
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.27 E-value=3.1e-06 Score=75.39 Aligned_cols=117 Identities=18% Similarity=0.180 Sum_probs=80.6
Q ss_pred chhHHHHHHHHHHcC----ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 123 GLIGQAWAMIFASAG----YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 123 G~~g~~ia~~~~~~G----~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
|.+|..++..++..| .++.++|.+++.++.....+++.... . ...+++.++|+.+++++||+
T Consensus 8 G~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~-------------~-~~~~i~~~~d~~~~~~~aDi 73 (263)
T cd00650 8 GNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEP-------------L-ADIKVSITDDPYEAFKDADV 73 (263)
T ss_pred ChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhh-------------c-cCcEEEECCchHHHhCCCCE
Confidence 789999999999888 79999999997776655544433211 1 12466778887778999999
Q ss_pred EEE--------------ccccchHHHHHHHHHHhhhCCCCcEEE-eCCCCcCHHHHhccCC-CCCcEEEec
Q psy17416 199 IQE--------------SVPEILQIKHQVYRAIDIFMSSNTILS-SSTSSFLPSVLSEHST-HRSQFIVAH 253 (290)
Q Consensus 199 Vie--------------avpe~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~~la~~~~-~~~r~ig~H 253 (290)
||+ .+.++..+++++.+++.+.++...+|. ||--.+....+.+... .+.|++|+.
T Consensus 74 Vv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~ 144 (263)
T cd00650 74 VIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLG 144 (263)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEee
Confidence 999 788899999999999999985444333 2222221112222222 357788877
No 112
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.26 E-value=2.9e-05 Score=69.12 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=86.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee-
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE- 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE- 80 (290)
++..++++++|+||-|++ .+...+++..+...++++.++.|.++++++.++....+.. +++++++..|.....-+.
T Consensus 53 ~~~~e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~ 129 (266)
T PLN02688 53 ASNTEVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASV 129 (266)
T ss_pred CChHHHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEE
Confidence 466778899999999994 6668889889988888999888999999999999877654 788888888876554444
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+..+..++++.++.+..++..+|+ ++.+
T Consensus 130 l~~~~~~~~~~~~~v~~l~~~~G~-~~~~ 157 (266)
T PLN02688 130 MSLGPAATADDRDLVATLFGAVGK-IWVV 157 (266)
T ss_pred EEeCCCCCHHHHHHHHHHHHhCCC-EEEe
Confidence 456778899999999999999998 7765
No 113
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.26 E-value=3.3e-06 Score=78.59 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=85.7
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHh-hcCCCcEEeecCCC--CChHHHhcccCCCCceeeeccCCCC-----
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDI-FMSSNTILSSSTSS--FLPSVLSEHSTHRSQFIVAHPVNPP----- 73 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~-~~~~~~i~~snts~--~~~~~l~~~~~~~~r~~g~hf~~P~----- 73 (290)
+++++++++||+||.|+|.+ ...++++++.. ..++++++...+|. -.+..+.....+..+|+|.|++.=.
T Consensus 52 ~~~~~~~~~aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~ 129 (359)
T PRK06545 52 ADLQRAAAEADLIVLAVPVD--ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGV 129 (359)
T ss_pred cCHHHHhcCCCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhH
Confidence 57788899999999999986 56899999987 37888888654443 3344555555667899999964321
Q ss_pred -----C--CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEec
Q psy17416 74 -----Y--FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNR 120 (290)
Q Consensus 74 -----~--~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nr 120 (290)
. .....=+++++.++++.++.+.+++..+|+.++.+..+....++..
T Consensus 130 ~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~ 183 (359)
T PRK06545 130 AAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVAL 183 (359)
T ss_pred HHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhH
Confidence 1 1122336788889999999999999999999988755554444443
No 114
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.25 E-value=2.8e-05 Score=69.14 Aligned_cols=137 Identities=14% Similarity=0.086 Sum_probs=100.1
Q ss_pred eeeEEecccchhHHHHHHHHHHcCc----eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGY----KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~----~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
-||++ +|.||.+++..+.+.|. ++..++++++.. + .....+.
T Consensus 6 I~iIG---~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~--------------~~~~~~~ 51 (260)
T PTZ00431 6 VGFIG---LGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------P--------------FVYLQSN 51 (260)
T ss_pred EEEEC---ccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------C--------------eEEeCCh
Confidence 46776 89999999999988762 488888876431 0 0123455
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCC---CcEEEeccCCCCCCCCeEEE
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHR---SQFIVAHPVNPPYFIPLVEI 266 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~---~r~ig~Hf~~p~~~~~lvEv 266 (290)
.+.+.++|+||.|+| ...-.++++++.+.++++ +++|...+++.+.+...++.. .|+++.|+-. ......-+
T Consensus 52 ~~~~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~--~g~g~t~i 126 (260)
T PTZ00431 52 EELAKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSL--VGQGSLVF 126 (260)
T ss_pred HHHHHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhH--hcceeEEE
Confidence 556789999999999 444789999998887765 557899999998888776543 3566666511 11234557
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 267 VPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 267 v~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+++..++++..+.+.++|+.+|+
T Consensus 127 ~~~~~~~~~~~~~v~~l~~~~G~ 149 (260)
T PTZ00431 127 CANNNVDSTDKKKVIDIFSACGI 149 (260)
T ss_pred EeCCCCCHHHHHHHHHHHHhCCc
Confidence 88888899999999999999996
No 115
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.24 E-value=3e-05 Score=73.64 Aligned_cols=95 Identities=19% Similarity=0.160 Sum_probs=65.1
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCh-hhh------hcccccCC
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSP-EEQ------FGLISGTP 187 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~-~~~------~~~i~~~~ 187 (290)
++++ +|.||..+|..++..|++|++||++++.++... .|...-..+. .+. .+++..++
T Consensus 7 ~VIG---lG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~------------~g~~~~~e~~l~~~l~~~~~~g~l~~~~ 71 (415)
T PRK11064 7 SVIG---LGYIGLPTAAAFASRQKQVIGVDINQHAVDTIN------------RGEIHIVEPDLDMVVKTAVEGGYLRATT 71 (415)
T ss_pred EEEC---cchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHH------------CCCCCcCCCCHHHHHHHHhhcCceeeec
Confidence 4555 799999999999999999999999999877522 1221111010 011 12344444
Q ss_pred chHhhcccCcEEEEccccc--------hHHHHHHHHHHhhhCCCCcEEE
Q psy17416 188 VLRECLEDAIFIQESVPEI--------LQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 188 ~l~~~l~~aDlVieavpe~--------~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+ +++||+||.|+|.+ +..-...++.+.+.++++++++
T Consensus 72 ~----~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI 116 (415)
T PRK11064 72 T----PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVI 116 (415)
T ss_pred c----cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEE
Confidence 3 34899999999975 2445566788999999998876
No 116
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.23 E-value=2.3e-05 Score=72.25 Aligned_cols=150 Identities=14% Similarity=0.065 Sum_probs=90.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCh---hhhhcccccCCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSP---EEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~---~~~~~~i~~~~~l~~~l~~aDl 198 (290)
+|.||..+|..+.+.|++|.++|+++. .+...+ .|........ .....++..+++.+ ++.++|+
T Consensus 10 ~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~ 76 (341)
T PRK08229 10 AGSIGCYLGGRLAAAGADVTLIGRARI-GDELRA-----------HGLTLTDYRGRDVRVPPSAIAFSTDPA-ALATADL 76 (341)
T ss_pred CCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHh-----------cCceeecCCCcceecccceeEeccChh-hccCCCE
Confidence 799999999999999999999998642 222111 2211100000 00113444566664 6789999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH-HHhccCCCCCcEEEeccCCCCCCCC-eE------EEecCC
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-VLSEHSTHRSQFIVAHPVNPPYFIP-LV------EIVPAA 270 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~-~la~~~~~~~r~ig~Hf~~p~~~~~-lv------Evv~~~ 270 (290)
||.|++... ..++++++.+.++++++|++.+.++... .+...+.....+.|.+++......| .+ .+.-+
T Consensus 77 vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~~- 153 (341)
T PRK08229 77 VLVTVKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALAIE- 153 (341)
T ss_pred EEEEecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceEec-
Confidence 999999654 6788999999999999888877777754 4555554322334444422111000 00 11111
Q ss_pred CCCHHHHHHHHHHHHHcCC
Q psy17416 271 WTSERVITRTREIMTEIGM 289 (290)
Q Consensus 271 ~t~~e~~~~~~~~~~~lgk 289 (290)
..+.++++.++++..|.
T Consensus 154 --~~~~~~~~~~~l~~~g~ 170 (341)
T PRK08229 154 --ASPALRPFAAAFARAGL 170 (341)
T ss_pred --CCchHHHHHHHHHhcCC
Confidence 12446778888877663
No 117
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.17 E-value=0.00011 Score=67.20 Aligned_cols=146 Identities=13% Similarity=0.110 Sum_probs=101.2
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecC-CHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~-~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
-||++ .|.||.+++..+...|++|.+++. +++..+++.+ .| +.. .+..++
T Consensus 6 IgiIG---~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~-----------~G--------------v~~-~s~~ea 56 (314)
T TIGR00465 6 VAIIG---YGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATE-----------DG--------------FKV-GTVEEA 56 (314)
T ss_pred EEEEe---EcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHH-----------CC--------------CEE-CCHHHH
Confidence 46776 899999999999999998876544 3444333322 11 112 246667
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCC-------CC-eE
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-------IP-LV 264 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~-------~~-lv 264 (290)
+++||+|+.++|.... ...+++++.+.++++. ++|-..++++..+...++...+++=.=|--|... .. .-
T Consensus 57 ~~~ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~ 134 (314)
T TIGR00465 57 IPQADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVP 134 (314)
T ss_pred HhcCCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCee
Confidence 8999999999996632 4566777888888887 4577888888888766654445665555555542 22 11
Q ss_pred EEe-cCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 265 EIV-PAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 265 Evv-~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
=++ .+...+.+..+.+.+++..+|++
T Consensus 135 ~l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 135 TLIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 233 56677888899999999999974
No 118
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.16 E-value=2.9e-05 Score=71.82 Aligned_cols=101 Identities=15% Similarity=0.032 Sum_probs=75.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-hhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLS-PEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~-~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.||..+|..+++.| +|.+|.++++..+...+. +.....++ ......++..++|+++++.++|+||
T Consensus 15 aGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~-----------~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVi 82 (341)
T PRK12439 15 GGSWGTTVASICARRG-PTLQWVRSAETADDINDN-----------HRNSRYLGNDVVLSDTLRATTDFAEAANCADVVV 82 (341)
T ss_pred CCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhc-----------CCCcccCCCCcccCCCeEEECCHHHHHhcCCEEE
Confidence 6999999999999998 788999999876655441 11111111 1122345677889988899999999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP 236 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 236 (290)
.|+|... -+++++++.+.++++++++|-+.++..
T Consensus 83 lavps~~--~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 83 MGVPSHG--FRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred EEeCHHH--HHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 9999554 778999999999999877776666664
No 119
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.15 E-value=1.8e-06 Score=79.09 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=70.4
Q ss_pred CCcHHhhcccCcEEEEcc-------------------cCChHHHHHHHHHHHhhcCCC-cEEeecCCCCChHHHhcccCC
Q psy17416 1 TPVLRECLEDAIFIQESV-------------------PEILQIKHQVYRAIDIFMSSN-TILSSSTSSFLPSVLSEHSTH 60 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~-------------------~e~~~~K~~~~~~~~~~~~~~-~i~~snts~~~~~~l~~~~~~ 60 (290)
++|.+ +++|||+||+++ .+|.++++++++++++.+|+. .|++||++++....+....++
T Consensus 66 ~~d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~ 144 (321)
T PTZ00082 66 TNNYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGL 144 (321)
T ss_pred CCCHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCC
Confidence 36774 899999999955 889999999999999999773 799999999999999988887
Q ss_pred C-CceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 61 R-SQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 61 ~-~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
| +|++|++ |..+.......+++.+|..|-
T Consensus 145 p~~rviGlg------------------t~lds~R~~~~la~~l~v~~~ 174 (321)
T PTZ00082 145 PKNKVCGMA------------------GVLDSSRLRTYIAEKLGVNPR 174 (321)
T ss_pred ChhhEEEec------------------CcccHHHHHHHHHHHhCCCcc
Confidence 6 9999997 233344445556666776443
No 120
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.14 E-value=0.00016 Score=62.66 Aligned_cols=148 Identities=17% Similarity=0.087 Sum_probs=91.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.||..++..+.+.|++|.+++++++..+...+.....+. ..|.. .++. ..+..++++++|+||.
T Consensus 9 ~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~---~~g~~----------~~~~-~~~~~ea~~~aDvVil 74 (219)
T TIGR01915 9 TGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELG---HGGSD----------IKVT-GADNAEAAKRADVVIL 74 (219)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhcc---ccCCC----------ceEE-EeChHHHHhcCCEEEE
Confidence 48899999999999999999999999887654432211110 00100 0111 1344567889999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH-----------------HHHhccCCCCCcEEEeccCC------C-
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-----------------SVLSEHSTHRSQFIVAHPVN------P- 257 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-----------------~~la~~~~~~~r~ig~Hf~~------p- 257 (290)
|+|... -.++++++.+.++. .++++.+.++.. +.+++.++...|++..-... +
T Consensus 75 avp~~~--~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~ 151 (219)
T TIGR01915 75 AVPWDH--VLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDV 151 (219)
T ss_pred ECCHHH--HHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCC
Confidence 999544 56777888776654 677766655554 34555554325666542211 1
Q ss_pred CC-CCCeEEEecCCCCCHHHHHHHHHHHHHc-CC
Q psy17416 258 PY-FIPLVEIVPAAWTSERVITRTREIMTEI-GM 289 (290)
Q Consensus 258 ~~-~~~lvEvv~~~~t~~e~~~~~~~~~~~l-gk 289 (290)
.. ...-+-++ |. +++..+++.++.+.+ |.
T Consensus 152 ~~~~~~~~~v~-Gd--d~~ak~~v~~L~~~~~G~ 182 (219)
T TIGR01915 152 DDEVDCDVLVC-GD--DEEAKEVVAELAGRIDGL 182 (219)
T ss_pred CCCCCCCEEEE-CC--CHHHHHHHHHHHHhcCCC
Confidence 11 11222233 32 677888999999988 75
No 121
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.10 E-value=7.5e-06 Score=64.74 Aligned_cols=113 Identities=23% Similarity=0.227 Sum_probs=70.7
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEE-ecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSL-YDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l-~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
.-|+|+ .|..|..++..+.+.|++|.. |.++++..+++...+.. . ...++++
T Consensus 12 ~I~iIG---aGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~-----------------------~-~~~~~~~ 64 (127)
T PF10727_consen 12 KIGIIG---AGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGA-----------------------G-AILDLEE 64 (127)
T ss_dssp EEEEEC---TSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----------------------------TTG
T ss_pred EEEEEC---CCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccc-----------------------c-ccccccc
Confidence 346666 688899999999999999864 67888776665542111 1 1245566
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhh--CCCCcEEEeCCCCcCHHHHhccCCCCCcEEEecc
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIF--MSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 254 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~--~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf 254 (290)
.+.++|++|.++|++. ..++.++|.+. ..++.+++=.+.+++.+.+......-.....+||
T Consensus 65 ~~~~aDlv~iavpDda--I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 65 ILRDADLVFIAVPDDA--IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp GGCC-SEEEE-S-CCH--HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred ccccCCEEEEEechHH--HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 7899999999999997 77999999988 8889888744445555555443334445666775
No 122
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.07 E-value=0.00015 Score=64.37 Aligned_cols=145 Identities=17% Similarity=0.168 Sum_probs=105.8
Q ss_pred eeeEEecccchhHHHHHHHHHHcC----ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAG----YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G----~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
-||++ .|.||.+++.-+.+.| .+|.+.+++++..+...+ . . +.. .+++.
T Consensus 4 IgfIG---~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~----~------~-------------g~~-~~~~~ 56 (266)
T COG0345 4 IGFIG---AGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAA----E------Y-------------GVV-TTTDN 56 (266)
T ss_pred EEEEc---cCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHH----H------c-------------CCc-ccCcH
Confidence 47887 7999999999999988 589999999987763222 1 1 011 15666
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCC-CeEEEec
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFI-PLVEIVP 268 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~-~lvEvv~ 268 (290)
.+++.++|+||.|+.. ..-.++++++.+ ..++.+++|-.-+++++.+...++ ..+++=.=|--|.-.. -.-=++.
T Consensus 57 ~~~~~~advv~LavKP--q~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~ 132 (266)
T COG0345 57 QEAVEEADVVFLAVKP--QDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISA 132 (266)
T ss_pred HHHHhhCCEEEEEeCh--HhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeec
Confidence 6788899999999984 346788888888 778889999999999999988886 3333333232222111 1223566
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q psy17416 269 AAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lgk 289 (290)
+...+++..+.+.++++.+|+
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~ 153 (266)
T COG0345 133 NANVSEEDKAFVEALLSAVGK 153 (266)
T ss_pred CccCCHHHHHHHHHHHHhcCC
Confidence 788899999999999999997
No 123
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.05 E-value=5.3e-06 Score=76.00 Aligned_cols=90 Identities=11% Similarity=0.107 Sum_probs=73.0
Q ss_pred CCcHHhhcccCcEEEEcc--cCCh------------HHHHHHHHHHHhhcCCC-cEEeecCCCCChHHHhcccCCC-Cce
Q psy17416 1 TPVLRECLEDAIFIQESV--PEIL------------QIKHQVYRAIDIFMSSN-TILSSSTSSFLPSVLSEHSTHR-SQF 64 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~--~e~~------------~~K~~~~~~~~~~~~~~-~i~~snts~~~~~~l~~~~~~~-~r~ 64 (290)
++|++ +++|||+|++++ +++. ++++++.+++++.||+. .|++||++++....+....+.| +|+
T Consensus 65 ~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rv 143 (319)
T PTZ00117 65 TNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKI 143 (319)
T ss_pred CCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccE
Confidence 36777 899999999999 8877 99999999999999888 6889999999988888888777 999
Q ss_pred eeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 65 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 65 ~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+|++ |..++...-..+++.+|..|-.+
T Consensus 144 iG~g------------------t~lds~R~~~~la~~l~v~~~~v 170 (319)
T PTZ00117 144 CGMA------------------GVLDSSRFRCNLAEKLGVSPGDV 170 (319)
T ss_pred EEec------------------chHHHHHHHHHHHHHhCCCcccc
Confidence 9987 33445555566677788654433
No 124
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.02 E-value=3.6e-06 Score=76.42 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=72.3
Q ss_pred CcHHhhcccCcEEEEcc--------------cCChHHHHHHHHHHHhhcCCCc-EEeecCCCCChHHHhcccCC-CCcee
Q psy17416 2 PVLRECLEDAIFIQESV--------------PEILQIKHQVYRAIDIFMSSNT-ILSSSTSSFLPSVLSEHSTH-RSQFI 65 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~--------------~e~~~~K~~~~~~~~~~~~~~~-i~~snts~~~~~~l~~~~~~-~~r~~ 65 (290)
+|.+ ++++||+||+++ +||+++|+++++++++.++++. |+.||.+++....+....+. |+|++
T Consensus 59 ~d~~-~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rvi 137 (300)
T cd01339 59 NDYE-DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVI 137 (300)
T ss_pred CCHH-HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEE
Confidence 5654 799999999866 8999999999999999998888 68899999999998888776 58999
Q ss_pred eeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 66 g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
|+- |..++...-..+++.++..|-.+
T Consensus 138 Glg------------------t~lds~r~~~~la~~l~v~~~~v 163 (300)
T cd01339 138 GMA------------------GVLDSARFRYFIAEELGVSVKDV 163 (300)
T ss_pred Eec------------------chHHHHHHHHHHHHHhCCCccce
Confidence 874 45566666677777888755433
No 125
>PLN03139 formate dehydrogenase; Provisional
Probab=97.95 E-value=0.0008 Score=63.12 Aligned_cols=140 Identities=12% Similarity=0.035 Sum_probs=89.6
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+-|+++ .|.||+.+|..+...|.+|..||+++...+...+ .++....++++.
T Consensus 201 tVGIVG---~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~-------------------------~g~~~~~~l~el 252 (386)
T PLN03139 201 TVGTVG---AGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKE-------------------------TGAKFEEDLDAM 252 (386)
T ss_pred EEEEEe---ecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhh-------------------------cCceecCCHHHH
Confidence 345565 7999999999999999999999987522111000 012234688899
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCC-CCcEEEecc--------CCCCCCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTH-RSQFIVAHP--------VNPPYFI 261 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~-~~r~ig~Hf--------~~p~~~~ 261 (290)
+++||+|+.++|...+.+.-+-+++...++++++++..+-+-.+. .+.+.+.. +-+..++=- -+|.+.+
T Consensus 253 l~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~ 332 (386)
T PLN03139 253 LPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYM 332 (386)
T ss_pred HhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcC
Confidence 999999999999888877766677888899999987433333332 45444431 222222221 1233456
Q ss_pred CeEEEecCC-CCCHHHHHHH
Q psy17416 262 PLVEIVPAA-WTSERVITRT 280 (290)
Q Consensus 262 ~lvEvv~~~-~t~~e~~~~~ 280 (290)
|.+-++|+- .++.+..++.
T Consensus 333 pNvilTPHiag~t~~~~~r~ 352 (386)
T PLN03139 333 PNHAMTPHISGTTIDAQLRY 352 (386)
T ss_pred CCeEEcccccccCHHHHHHH
Confidence 788888874 3344554443
No 126
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.94 E-value=6.8e-05 Score=63.30 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=65.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCh-hh------hhcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSP-EE------QFGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~-~~------~~~~i~~~~~l~~~l~ 194 (290)
+|.+|.-+|..++..|++|+.+|.+++.++...+ |...-..+. .+ ..++++++++.+++++
T Consensus 8 lGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~------------g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~ 75 (185)
T PF03721_consen 8 LGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN------------GELPIYEPGLDELLKENVSAGRLRATTDIEEAIK 75 (185)
T ss_dssp -STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT------------TSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH
T ss_pred CCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh------------ccccccccchhhhhccccccccchhhhhhhhhhh
Confidence 6889999999999999999999999998776543 221111111 11 1357788999999999
Q ss_pred cCcEEEEccccch--------HHHHHHHHHHhhhCCCCcEEE
Q psy17416 195 DAIFIQESVPEIL--------QIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 195 ~aDlVieavpe~~--------~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+||++|.|+|-+. .--.+...+|.+.++++.+++
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV 117 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV 117 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE
Confidence 9999999998554 335677788999999988776
No 127
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=97.94 E-value=0.0002 Score=63.10 Aligned_cols=127 Identities=16% Similarity=0.162 Sum_probs=90.4
Q ss_pred CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHH
Q psy17416 137 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRA 216 (290)
Q Consensus 137 G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~ 216 (290)
.++|.+++++++..++..+. .| +..+.+..+.+.++|+||.|++ ...-.+++.+
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~----------~g--------------~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~ 62 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKE----------LG--------------IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSE 62 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHH----------cC--------------cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHH
Confidence 36899999998876544331 01 2234566667789999999999 4446788888
Q ss_pred HhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCC-CCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 217 IDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-IPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 217 l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~-~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+.+.+.++.+|+|-..+++++.+...++...+++=.=|-.|... ....-+.+++..+++..+.+..+|..+|+
T Consensus 63 l~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~ 136 (245)
T TIGR00112 63 LKSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGE 136 (245)
T ss_pred HhhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCC
Confidence 88877778899999999999999887754333333222222222 12344677888899999999999999997
No 128
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.94 E-value=6.3e-05 Score=56.09 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=64.8
Q ss_pred eeEEecccchhHHHHHHHHHHcC---ceeEEe-cCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCC-ch
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAG---YKVSLY-DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP-VL 189 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G---~~V~l~-d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~-~l 189 (290)
||++ .|.||..++..+.+.| .+|.++ +++++...+..++ . ...... +.
T Consensus 3 ~iIG---~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~--------------~~~~~~~~~ 55 (96)
T PF03807_consen 3 GIIG---AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------Y--------------GVQATADDN 55 (96)
T ss_dssp EEES---TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------C--------------TTEEESEEH
T ss_pred EEEC---CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------h--------------ccccccCCh
Confidence 5664 7999999999999999 899955 9999988766551 0 012223 67
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCC
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 231 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 231 (290)
.++++++|+||.|+|... -.+++.++ ....++.+++|-+
T Consensus 56 ~~~~~~advvilav~p~~--~~~v~~~i-~~~~~~~~vis~~ 94 (96)
T PF03807_consen 56 EEAAQEADVVILAVKPQQ--LPEVLSEI-PHLLKGKLVISIA 94 (96)
T ss_dssp HHHHHHTSEEEE-S-GGG--HHHHHHHH-HHHHTTSEEEEES
T ss_pred HHhhccCCEEEEEECHHH--HHHHHHHH-hhccCCCEEEEeC
Confidence 778999999999999555 77999999 6677777777643
No 129
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.91 E-value=0.00041 Score=62.65 Aligned_cols=177 Identities=14% Similarity=0.107 Sum_probs=104.7
Q ss_pred cHHhhcccCcEEEEccc--------------CChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeec
Q psy17416 3 VLRECLEDAIFIQESVP--------------EILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAH 68 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~--------------e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~h 68 (290)
+.+++++++|.||==+| +++.+..++++ .+++.+++.+...+..+...+...+-+ ...
T Consensus 47 ~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~----~~~~~~~~~~G~~~~~l~~~a~~~gi~----v~~ 118 (287)
T TIGR02853 47 LLELDLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLE----STKGHCTIYVGISNPYLEQLAADAGVK----LIE 118 (287)
T ss_pred chhhhhccCCEEEECCccccCCceEecccccCCccccHHHHH----hcCCCCEEEEecCCHHHHHHHHHCCCe----EEE
Confidence 45667899999997777 22223444444 445789999998888887655443211 111
Q ss_pred cCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHH
Q psy17416 69 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSE 148 (290)
Q Consensus 69 f~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e 148 (290)
|+- +.-+-+-.+..|.+.++..+.+. .++.+....-+.++ +|.+|+.+|..+...|.+|.+++++++
T Consensus 119 ~~~----~~~va~~n~~~~Ae~ai~~al~~------~~~~l~gk~v~IiG---~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 119 LFE----RDDVAIYNSIPTAEGAIMMAIEH------TDFTIHGSNVMVLG---FGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred EEe----ccceEEEccHhHHHHHHHHHHHh------cCCCCCCCEEEEEc---ChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 111 11111222333344444433332 12233223334454 799999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 149 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 149 ~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
...++.+ .|.. .+. ..++.+.++++|+||.++|..+- -++..+.+++++++.
T Consensus 186 ~~~~~~~-----------~g~~-----------~~~-~~~l~~~l~~aDiVint~P~~ii-----~~~~l~~~k~~aliI 237 (287)
T TIGR02853 186 DLARITE-----------MGLI-----------PFP-LNKLEEKVAEIDIVINTIPALVL-----TADVLSKLPKHAVII 237 (287)
T ss_pred HHHHHHH-----------CCCe-----------eec-HHHHHHHhccCCEEEECCChHHh-----CHHHHhcCCCCeEEE
Confidence 6544322 1110 011 23566778999999999996531 133445678888876
No 130
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.90 E-value=0.00011 Score=65.43 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=81.9
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee-
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE- 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE- 80 (290)
++.++.+.++|+||-|++-. .=.++++++.... +.++.|.++++++..+...+++..+++.+|+.+|.....-+.
T Consensus 54 ~~~~~~~~~advVil~v~~~--~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~ 129 (267)
T PRK11880 54 TDNQEAAQEADVVVLAVKPQ--VMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTA 129 (267)
T ss_pred CChHHHHhcCCEEEEEcCHH--HHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEE
Confidence 46677789999999999533 3345666666555 578889999999999998887677999999999876555444
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+..+..++++.++.+.+++..+|+ ++.+
T Consensus 130 i~~~~~~~~~~~~~v~~l~~~lG~-~~~~ 157 (267)
T PRK11880 130 LTANALVSAEDRELVENLLSAFGK-VVWV 157 (267)
T ss_pred EecCCCCCHHHHHHHHHHHHhCCe-EEEE
Confidence 567778899999999999999997 5555
No 131
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.90 E-value=6.9e-05 Score=68.77 Aligned_cols=101 Identities=19% Similarity=0.188 Sum_probs=71.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc-ccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL-EDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l-~~aDlVi 200 (290)
+|.||..++..+.+.|++|.+|+++++.++...+..+ +. ..++......++..++++.+++ .++|++|
T Consensus 8 aGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~---------~~--~~~~~~~~~~~i~~~~~~~~~~~~~~Dlii 76 (326)
T PRK14620 8 AGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRK---------NL--KYLPTCHLPDNISVKSAIDEVLSDNATCII 76 (326)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCC---------Cc--ccCCCCcCCCCeEEeCCHHHHHhCCCCEEE
Confidence 6999999999999999999999999876654433100 00 0011111224556677887766 5899999
Q ss_pred EccccchHHHHHHHHHHhh-hCCCCcEEEeCCCCcC
Q psy17416 201 ESVPEILQIKHQVYRAIDI-FMSSNTILSSSTSSFL 235 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~-~~~~~~ii~s~ts~~~ 235 (290)
.|+|... -.++++++.+ .+++++.+++-++++.
T Consensus 77 iavks~~--~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 77 LAVPTQQ--LRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred EEeCHHH--HHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 9999665 6788999988 8888876666666663
No 132
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.90 E-value=0.00028 Score=68.02 Aligned_cols=150 Identities=11% Similarity=0.088 Sum_probs=93.4
Q ss_pred cchhHHHHHHHHHHc--CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhh-----cccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASA--GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQF-----GLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~--G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~-----~~i~~~~~l~~~l~ 194 (290)
+|.+|.-+|..++.. |++|+.+|.+++.++...+. +..-......+++ .+++++++++++++
T Consensus 9 ~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g-----------~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~ 77 (473)
T PLN02353 9 AGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSD-----------QLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVA 77 (473)
T ss_pred CCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcC-----------CCccCCCCHHHHHHHhhcCCEEEEcCHHHHHh
Confidence 689999999999987 58899999999988765541 1110000111221 24888999988899
Q ss_pred cCcEEEEccccch-------------HHHHHHHHHHhhhCCCCcEEE-eCCCCcCHH-HHhccC------------CCCC
Q psy17416 195 DAIFIQESVPEIL-------------QIKHQVYRAIDIFMSSNTILS-SSTSSFLPS-VLSEHS------------THRS 247 (290)
Q Consensus 195 ~aDlVieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~-~la~~~------------~~~~ 247 (290)
+||++|.|||-.. .--....++|.+.++++.+++ .+|-..-.+ .+...+ ..|+
T Consensus 78 ~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 78 EADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred cCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 9999999996333 245677788999999988776 222222211 222111 1344
Q ss_pred cEEEec----cCCCCCCCCeEEEecCCC--CCHHHHHHHHHHHHHc
Q psy17416 248 QFIVAH----PVNPPYFIPLVEIVPAAW--TSERVITRTREIMTEI 287 (290)
Q Consensus 248 r~ig~H----f~~p~~~~~lvEvv~~~~--t~~e~~~~~~~~~~~l 287 (290)
|+.-.. |.+|+.. |+.+.. +.++..+++.++++.+
T Consensus 158 rl~~G~a~~d~~~p~ri-----ViG~~~~~~~~~a~~~~~~lY~~~ 198 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRV-----LIGGRETPEGQKAVQALKDVYAHW 198 (473)
T ss_pred ccCCCCcccccCCCCEE-----EEccCCchhhHHHHHHHHHHHHHh
Confidence 443333 3455532 345532 2356788888888765
No 133
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.90 E-value=7.1e-05 Score=71.52 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=86.6
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCC--CCChHHHhcccCCCCceeeeccCC----CCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS--SFLPSVLSEHSTHRSQFIVAHPVN----PPYF 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts--~~~~~~l~~~~~~~~r~~g~hf~~----P~~~ 75 (290)
+++++++.+||+||-|+|-+ .-.++++++...+++++++.+.+| ..++..+.+..+...+++|.|++. |...
T Consensus 50 ~~~~e~~~~aDvVIlavp~~--~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~ 127 (437)
T PRK08655 50 NDNIDAAKDADIVIISVPIN--VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLK 127 (437)
T ss_pred cCHHHHhccCCEEEEecCHH--HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccC
Confidence 47778899999999999975 335889999999999999998887 456667777765556899999653 3334
Q ss_pred CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecc
Q psy17416 76 IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 76 ~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d 112 (290)
...+-++++..++++.++.+.+++..+|..++.+..+
T Consensus 128 g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e 164 (437)
T PRK08655 128 GQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPE 164 (437)
T ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHH
Confidence 4566678888889999999999999999988876433
No 134
>PRK07574 formate dehydrogenase; Provisional
Probab=97.89 E-value=0.0007 Score=63.52 Aligned_cols=134 Identities=12% Similarity=-0.010 Sum_probs=85.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||+.+|..+...|.+|..||++....+.... .++....++++.+++||+|+.
T Consensus 200 ~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~-------------------------~g~~~~~~l~ell~~aDvV~l 254 (385)
T PRK07574 200 AGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQE-------------------------LGLTYHVSFDSLVSVCDVVTI 254 (385)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhh-------------------------cCceecCCHHHHhhcCCEEEE
Confidence 6899999999999999999999987632111000 012234678889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCC-CCcEEEec-c-------CCCCCCCCeEEEecCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTH-RSQFIVAH-P-------VNPPYFIPLVEIVPAA 270 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~-~~r~ig~H-f-------~~p~~~~~lvEvv~~~ 270 (290)
++|-..+.+.-+=++....++++++++..+.+-.+. .+.+.+.. +-+-.++= | -+|.+.+|.|-++|+-
T Consensus 255 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHi 334 (385)
T PRK07574 255 HCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHI 334 (385)
T ss_pred cCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCcc
Confidence 999888776655567888899999987433333332 44444431 22212221 1 1233456788888873
Q ss_pred -CCCHHHHHHH
Q psy17416 271 -WTSERVITRT 280 (290)
Q Consensus 271 -~t~~e~~~~~ 280 (290)
..+.+..+++
T Consensus 335 ag~T~e~~~~~ 345 (385)
T PRK07574 335 SGTTLSAQARY 345 (385)
T ss_pred ccCcHHHHHHH
Confidence 3345555443
No 135
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.79 E-value=0.00045 Score=58.84 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=68.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.||+-++..+.+.|+.|. +++||+||.
T Consensus 9 ~G~mG~~~~~~~~~~g~~v~---------------------------------------------------~~~~DlVil 37 (197)
T PRK06444 9 NGRLGRVLCSILDDNGLGVY---------------------------------------------------IKKADHAFL 37 (197)
T ss_pred CCcHHHHHHHHHHhCCCEEE---------------------------------------------------ECCCCEEEE
Confidence 47889988888888888774 247999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCC-----CeEEEecCCCCCHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFI-----PLVEIVPAAWTSERV 276 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~-----~lvEvv~~~~t~~e~ 276 (290)
|+|.+. -.++++++.+ ++ +..+|.... +... ..+|+|.||+..|... +.+-++ .+.++++.
T Consensus 38 avPv~~--~~~~i~~~~~------~v-~Dv~SvK~~-i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv~-~~~~~~~~ 103 (197)
T PRK06444 38 SVPIDA--ALNYIESYDN------NF-VEISSVKWP-FKKY---SGKIVSIHPLFGPMSYNDGVHRTVIFI-NDISRDNY 103 (197)
T ss_pred eCCHHH--HHHHHHHhCC------eE-EeccccCHH-HHHh---cCCEEecCCCCCCCcCcccccceEEEE-CCCCCHHH
Confidence 999544 5577766542 44 455555553 3222 3489999997664332 233344 67889999
Q ss_pred HHHHHHHHH
Q psy17416 277 ITRTREIMT 285 (290)
Q Consensus 277 ~~~~~~~~~ 285 (290)
++++.++|+
T Consensus 104 ~~~~~~l~~ 112 (197)
T PRK06444 104 LNEINEMFR 112 (197)
T ss_pred HHHHHHHHc
Confidence 999999987
No 136
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.79 E-value=0.00019 Score=65.28 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=80.1
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCC---hHHHhcccCCCCceeeeccCCCCCCC--
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL---PSVLSEHSTHRSQFIVAHPVNPPYFI-- 76 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~---~~~l~~~~~~~~r~~g~hf~~P~~~~-- 76 (290)
+++++++++||+||.|+|.. ...+++.++...+++++++... ++.. +..+.......-|+++.|++......
T Consensus 58 ~~~~~~~~~aDvViiavp~~--~~~~v~~~l~~~l~~~~iv~dv-gs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~ 134 (307)
T PRK07502 58 TSAAEAVKGADLVILCVPVG--ASGAVAAEIAPHLKPGAIVTDV-GSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGP 134 (307)
T ss_pred CCHHHHhcCCCEEEECCCHH--HHHHHHHHHHhhCCCCCEEEeC-ccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccch
Confidence 46777899999999999974 3577888888888999877543 3334 33444454445589999999864421
Q ss_pred ----------CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccc
Q psy17416 77 ----------PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 113 (290)
Q Consensus 77 ----------~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~ 113 (290)
..+.+.+...++++.++.+.+++..+|..++.+..+.
T Consensus 135 ~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~ 181 (307)
T PRK07502 135 DAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMDPEH 181 (307)
T ss_pred hhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHH
Confidence 1234666777889999999999999999988874343
No 137
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=97.78 E-value=0.00023 Score=62.03 Aligned_cols=140 Identities=18% Similarity=0.205 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCceeEEecCCHHHHHHH-HHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccc
Q psy17416 126 GQAWAMIFASAGYKVSLYDVLSEQIENA-KNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVP 204 (290)
Q Consensus 126 g~~ia~~~~~~G~~V~l~d~~~e~l~~a-~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavp 204 (290)
|..+|.-++..|++|++.|.|.+..+.. .++++. .+.+.++|-.++.+.+++.+.=+|
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~ved---------------------AGV~vv~dD~eaa~~~Ei~VLFTP 91 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVED---------------------AGVEVVSDDAEAAEHGEIHVLFTP 91 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHh---------------------cCcEEecCchhhhhcceEEEEecc
Confidence 6778999999999999999988776554 343332 234455665667899999998888
Q ss_pred cchH-HHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHh----ccCCCCCc---EEEeccCCCCC--CCCeEEEecCCC---
Q psy17416 205 EILQ-IKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS----EHSTHRSQ---FIVAHPVNPPY--FIPLVEIVPAAW--- 271 (290)
Q Consensus 205 e~~~-~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la----~~~~~~~r---~ig~Hf~~p~~--~~~lvEvv~~~~--- 271 (290)
+. .-..+.++|.+.++.+++|+ ||-+.++-.+- ..++.+.+ +-.+||..-|- ..... ++.|..
T Consensus 92 --FGk~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~y-viagr~t~g 167 (340)
T COG4007 92 --FGKATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHY-VIAGRSTEG 167 (340)
T ss_pred --cchhhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceE-EEeccCCCc
Confidence 44 34567788999999999997 33333332332 33444433 33456533221 11121 333333
Q ss_pred ---CCHHHHHHHHHHHHHcCCC
Q psy17416 272 ---TSERVITRTREIMTEIGMK 290 (290)
Q Consensus 272 ---t~~e~~~~~~~~~~~lgk~ 290 (290)
..+|.++++.++++++||.
T Consensus 168 ~elATeEQi~r~velaes~Gk~ 189 (340)
T COG4007 168 KELATEEQIERCVELAESTGKE 189 (340)
T ss_pred eeeccHHHHHHHHHHHHhcCCc
Confidence 3688899999999999984
No 138
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.66 E-value=0.00018 Score=72.47 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=69.3
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHHhccCCC-CCcEEEeccCCCC------------CCCCe
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHSTH-RSQFIVAHPVNPP------------YFIPL 263 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~la~~~~~-~~r~ig~Hf~~p~------------~~~~l 263 (290)
||.|+| +..-.++++++.+.++++++++ +++++-.+..+...+.. +.+|+|.||+... +....
T Consensus 1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 578999 6667899999999999999886 34444444454444442 3579999996554 35567
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 264 VEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 264 vEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+-++|.+.++++.++++.+||+.+|.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga 104 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARA 104 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 88999999999999999999999985
No 139
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.63 E-value=0.0022 Score=59.19 Aligned_cols=123 Identities=19% Similarity=0.149 Sum_probs=80.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|+.+|..+...|.+|..||+++.... ... .| .. ..++++.+++||+|+.
T Consensus 158 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~-----------~~--------------~~-~~~l~ell~~aDiV~l 210 (333)
T PRK13243 158 FGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKE-----------LG--------------AE-YRPLEELLRESDFVSL 210 (333)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHH-----------cC--------------CE-ecCHHHHHhhCCEEEE
Confidence 699999999999999999999999764321 000 00 11 2467888999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH--HHHhccCCC-CCcEEEecc-------CCCCCCCCeEEEecCCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP--SVLSEHSTH-RSQFIVAHP-------VNPPYFIPLVEIVPAAW 271 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~la~~~~~-~~r~ig~Hf-------~~p~~~~~lvEvv~~~~ 271 (290)
++|-..+.+.-+-++..+.++++++++..+.+-.+ ..+...+.. +-...++=- -+|.+.++.|-++|+-.
T Consensus 211 ~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia 290 (333)
T PRK13243 211 HVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIG 290 (333)
T ss_pred eCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCC
Confidence 99988877766667788889999998743333322 244444431 111111111 22445567777888753
No 140
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.62 E-value=0.0016 Score=58.75 Aligned_cols=105 Identities=13% Similarity=0.060 Sum_probs=71.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||..+|..+...|++|++++++++..+...+ .|.... .. .....+..+++.++. .++|+||.
T Consensus 8 ~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~g~~~~--~~-~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 8 AGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE-----------NGLRLE--DG-EITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH-----------cCCccc--CC-ceeecccCCCChhHc-CCCCEEEE
Confidence 6899999999999999999999998876654433 121110 00 011122334566654 89999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH-HHhccC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-VLSEHS 243 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~-~la~~~ 243 (290)
|++... -..+++++.+.+.++++|++...++... .+...+
T Consensus 73 a~k~~~--~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 73 AVKAYQ--LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred eccccc--HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 999654 5788899999998887777655566543 444433
No 141
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.62 E-value=0.00025 Score=64.58 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=63.2
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|.||..+|..++..|+ +|.++|.+++ +.++... ...+ .+. ......+|++++|+++ +++||+||
T Consensus 9 aG~vG~~iA~~la~~g~~~VvlvDi~~~-l~~g~a~--d~~~----~~~------~~~~~~~i~~t~d~~~-~~~aDiVI 74 (305)
T TIGR01763 9 AGFVGATTAFRLAEKELADLVLLDVVEG-IPQGKAL--DMYE----ASP------VGGFDTKVTGTNNYAD-TANSDIVV 74 (305)
T ss_pred cCHHHHHHHHHHHHcCCCeEEEEeCCCC-hhHHHHH--hhhh----hhh------ccCCCcEEEecCCHHH-hCCCCEEE
Confidence 68999999999999886 8999999755 3332211 1111 010 0111257888889886 79999999
Q ss_pred Eccc--------------cchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 201 ESVP--------------EILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 201 eavp--------------e~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.+++ .|...-+++.+++.+..+...+|.
T Consensus 75 itag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv 116 (305)
T TIGR01763 75 ITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVV 116 (305)
T ss_pred EcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 9998 356677777788888865544433
No 142
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.60 E-value=0.00082 Score=61.97 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=64.8
Q ss_pred eeeEEecccchhHHHHHHHH-HHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 114 RGFALNRIHGLIGQAWAMIF-ASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~-~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
-|+++ +|.||+++|..+ ...|.+|..||+++.... . ..+...++++++
T Consensus 149 VgIIG---~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~-------------------------~~~~~~~~l~el 197 (332)
T PRK08605 149 VAVIG---TGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---A-------------------------TYVDYKDTIEEA 197 (332)
T ss_pred EEEEC---CCHHHHHHHHHHHhcCCCEEEEECCCccHhH---H-------------------------hhccccCCHHHH
Confidence 44554 799999999998 456889999998864310 0 001234578889
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS 237 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~ 237 (290)
+++||+|+.++|.....+.-+-+++.+.++++++++..+.+..+.
T Consensus 198 l~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd 242 (332)
T PRK08605 198 VEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVD 242 (332)
T ss_pred HHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccC
Confidence 999999999999877664322245667799999887555544433
No 143
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.0014 Score=60.82 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=75.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHH----HHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT----IQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAI 197 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~----i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aD 197 (290)
.|..|...+..++..||+|+.+|.+++.++...+. .+..++.+++++. ..+++++|+|++++++++|
T Consensus 8 tGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~---------~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 8 TGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENL---------ASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcc---------ccCcEEEEcCHHHHHhcCC
Confidence 47778888999999999999999999988765542 1112222222211 2246889999999999999
Q ss_pred EEEEccccchH--------HHHHHHHHHhhhCCCCcEEEeCCCCcCH
Q psy17416 198 FIQESVPEILQ--------IKHQVYRAIDIFMSSNTILSSSTSSFLP 236 (290)
Q Consensus 198 lVieavpe~~~--------~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 236 (290)
++|.|+|-+.. .-..+.+++.+.++..++++ .-|+.++
T Consensus 79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPv 124 (414)
T COG1004 79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPV 124 (414)
T ss_pred EEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCC
Confidence 99999987553 34566678888888866664 4444443
No 144
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=97.59 E-value=0.0022 Score=61.05 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=65.8
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-hhh--hhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLS-PEE--QFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~-~~~--~~~~i~~~~~l~~ 191 (290)
||++ +|.||..+|..++. |++|+.||++++.++...+ |...-..+ ..+ ..+++.++++.+
T Consensus 10 ~vIG---lGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~------------G~~~~~e~~~~~l~~~g~l~~t~~~~- 72 (425)
T PRK15182 10 AIIG---LGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKN------------GVDVNLETTEEELREARYLKFTSEIE- 72 (425)
T ss_pred EEEC---cCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHC------------cCCCCCCCCHHHHHhhCCeeEEeCHH-
Confidence 5665 79999999999877 6999999999998776543 11100000 011 123556677776
Q ss_pred hcccCcEEEEccccch--------HHHHHHHHHHhhhCCCCcEEE
Q psy17416 192 CLEDAIFIQESVPEIL--------QIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 192 ~l~~aDlVieavpe~~--------~~k~~~~~~l~~~~~~~~ii~ 228 (290)
++++||++|.|||.+. .--....+.|.+.++++.+++
T Consensus 73 ~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI 117 (425)
T PRK15182 73 KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVV 117 (425)
T ss_pred HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEE
Confidence 5899999999999763 122222357888898888776
No 145
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.0015 Score=60.47 Aligned_cols=94 Identities=21% Similarity=0.306 Sum_probs=70.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHH--------HHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT--------IQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
+|.+|--.|..+++.|++|..+|.++..+++.... ....+...+ ..++++.|+|.++ +
T Consensus 17 LGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v-------------~~g~lraTtd~~~-l 82 (436)
T COG0677 17 LGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAV-------------ESGKLRATTDPEE-L 82 (436)
T ss_pred cccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHH-------------hcCCceEecChhh-c
Confidence 78999999999999999999999999988765431 111111122 2356778899986 7
Q ss_pred ccCcEEEEccccchHH--------HHHHHHHHhhhCCCCcEEEe
Q psy17416 194 EDAIFIQESVPEILQI--------KHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 194 ~~aDlVieavpe~~~~--------k~~~~~~l~~~~~~~~ii~s 229 (290)
+.||++|.|||-.+.- -.+..+.+.++++.|.+++-
T Consensus 83 ~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIl 126 (436)
T COG0677 83 KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVIL 126 (436)
T ss_pred ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEE
Confidence 8999999999976642 33455679999999987773
No 146
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.59 E-value=0.0013 Score=59.55 Aligned_cols=107 Identities=10% Similarity=0.047 Sum_probs=69.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..+|..+++.|++|.++++ ++.++...+ .|........ ...-.....++.++...++|+||.
T Consensus 8 ~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~-----------~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 8 AGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRE-----------RGLVIRSDHG-DAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred CCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHh-----------CCeEEEeCCC-eEEecceeecCHHHccCCCCEEEE
Confidence 699999999999999999999999 766554332 2211100000 000111224566665689999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH-HHHhccC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHS 243 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~la~~~ 243 (290)
|++... -.++++++.+.++++++|.+..-++.. +.+...+
T Consensus 75 avk~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~ 115 (305)
T PRK12921 75 AVKAYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYF 115 (305)
T ss_pred EecccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhC
Confidence 999664 467888898888888877765556653 3444443
No 147
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.58 E-value=0.0022 Score=54.70 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=88.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..+|..++..|++|.+-.++.+...++..... + ..++. .+.+++.+.||+|+.
T Consensus 9 tGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l-------------~--------~~i~~-~~~~dA~~~aDVVvL 66 (211)
T COG2085 9 TGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAAL-------------G--------PLITG-GSNEDAAALADVVVL 66 (211)
T ss_pred cChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhh-------------c--------ccccc-CChHHHHhcCCEEEE
Confidence 6899999999999999999998666554443333111 0 11333 345567899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC----------------cCHH-HHhccCCCCCcEEE-ec------cCCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS----------------FLPS-VLSEHSTHRSQFIV-AH------PVNP 257 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~----------------~~~~-~la~~~~~~~r~ig-~H------f~~p 257 (290)
+|| ++.-..+.+++...+. +.|+++.|-. -+.+ .+++.++.. +++. .| +-+.
T Consensus 67 AVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~a~~l~~~ 142 (211)
T COG2085 67 AVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIPAAVLADL 142 (211)
T ss_pred ecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccCHHHhccC
Confidence 999 7778899999998877 6777743332 2223 333344433 3332 11 2222
Q ss_pred CCC--CCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 258 PYF--IPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 258 ~~~--~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++. .+-+-|+. -|.++.+.+.++.+.+|.
T Consensus 143 ~~~~~~~~v~vag---DD~~Ak~~v~~L~~~iG~ 173 (211)
T COG2085 143 AKPGGRRDVLVAG---DDAEAKAVVAELAEDIGF 173 (211)
T ss_pred CCcCCceeEEEec---CcHHHHHHHHHHHHhcCc
Confidence 222 22223333 378899999999999885
No 148
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.41 E-value=0.0013 Score=59.74 Aligned_cols=137 Identities=13% Similarity=0.088 Sum_probs=88.3
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+-|+++ +|.||+.+|..+...|.+|..||++... .|. . ....++++.
T Consensus 124 tvgIiG---~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~-----~--------~~~~~l~el 170 (303)
T PRK06436 124 SLGILG---YGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI-----S--------SIYMEPEDI 170 (303)
T ss_pred EEEEEC---cCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc-----c--------cccCCHHHH
Confidence 345555 7999999999888889999999987321 000 0 012478888
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCC--CcCHHHHhccCCC-CCcEEEeccCC--C---CCCCCeE
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS--SFLPSVLSEHSTH-RSQFIVAHPVN--P---PYFIPLV 264 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts--~~~~~~la~~~~~-~~r~ig~Hf~~--p---~~~~~lv 264 (290)
+++||+|+.++|...+.+.-+-++....++++++++..+. ...-..+...+.. +....++=-|. | .+..+.|
T Consensus 171 l~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nv 250 (303)
T PRK06436 171 MKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNV 250 (303)
T ss_pred HhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCE
Confidence 9999999999998887766555677778999998873332 2333355555542 23333332221 2 2345788
Q ss_pred EEecC-C-CCCHHHHHHHHH
Q psy17416 265 EIVPA-A-WTSERVITRTRE 282 (290)
Q Consensus 265 Evv~~-~-~t~~e~~~~~~~ 282 (290)
-++|+ . .++++..+++..
T Consensus 251 iiTPHi~g~~t~e~~~~~~~ 270 (303)
T PRK06436 251 ILSPHVAGGMSGEIMQPAVA 270 (303)
T ss_pred EECCccccccCHHHHHHHHH
Confidence 88998 3 356666555443
No 149
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.41 E-value=0.0029 Score=57.75 Aligned_cols=130 Identities=19% Similarity=0.154 Sum_probs=82.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|+.+|..+...|.+|..||+..... . . + +. ..++++.++.||+|+.
T Consensus 153 ~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~-----------~----~----------~~-~~~l~ell~~sDvv~l 202 (311)
T PRK08410 153 LGTIGKRVAKIAQAFGAKVVYYSTSGKNK----N-----------E----E----------YE-RVSLEELLKTSDIISI 202 (311)
T ss_pred CCHHHHHHHHHHhhcCCEEEEECCCcccc----c-----------c----C----------ce-eecHHHHhhcCCEEEE
Confidence 68999999999998999999999853210 0 0 0 11 2478889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCC-CCcEEEeccCC--C------CCC---CCeEEEe
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTH-RSQFIVAHPVN--P------PYF---IPLVEIV 267 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~-~~r~ig~Hf~~--p------~~~---~~lvEvv 267 (290)
++|-..+-+.-+=++.-..++++++++..+-+ +.-..+.+.+.. +-+ .++=-|. | .+. .+.|-++
T Consensus 203 h~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilT 281 (311)
T PRK08410 203 HAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLIT 281 (311)
T ss_pred eCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEEC
Confidence 99988776555556777789999999743323 333355555542 223 3333221 1 111 2567788
Q ss_pred cCC-CCCHHHHHHHHH
Q psy17416 268 PAA-WTSERVITRTRE 282 (290)
Q Consensus 268 ~~~-~t~~e~~~~~~~ 282 (290)
|+- ..+.+...++..
T Consensus 282 PH~a~~t~e~~~~~~~ 297 (311)
T PRK08410 282 PHIAWASKEARKTLIE 297 (311)
T ss_pred CccccCCHHHHHHHHH
Confidence 874 334555544433
No 150
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.40 E-value=0.00069 Score=68.97 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=82.9
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCC--CCChHHHhcccC-CCCceeeeccCCCCC----
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS--SFLPSVLSEHST-HRSQFIVAHPVNPPY---- 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts--~~~~~~l~~~~~-~~~r~~g~hf~~P~~---- 74 (290)
+|+++++.++|+|+.|+|.+ .-.++++++.+..++++++...+| .-.+..+.+.+. .+-|+++.|++.=..
T Consensus 55 ~~~~~~~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~ 132 (735)
T PRK14806 55 EDLAEAVSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGV 132 (735)
T ss_pred CCHHHHhcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchh
Confidence 46788899999999999964 578999999998889987754443 223666766553 367999999975111
Q ss_pred --------CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecc
Q psy17416 75 --------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 75 --------~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d 112 (290)
.-..+.+.++..++++.++.+.+++..+|+.++.+..+
T Consensus 133 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~~ 178 (735)
T PRK14806 133 HAANADLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMDVA 178 (735)
T ss_pred hhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcCHH
Confidence 12456778888899999999999999999988877443
No 151
>PLN02256 arogenate dehydrogenase
Probab=97.38 E-value=0.0013 Score=59.79 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=80.4
Q ss_pred CcHHhhc-ccCcEEEEcccCChHHHHHHHHHH-HhhcCCCcEEeecCC--CCChHHHhcccCCCCceeeeccCCCCCCCC
Q psy17416 2 PVLRECL-EDAIFIQESVPEILQIKHQVYRAI-DIFMSSNTILSSSTS--SFLPSVLSEHSTHRSQFIVAHPVNPPYFIP 77 (290)
Q Consensus 2 ~~l~~~~-~~~d~viea~~e~~~~K~~~~~~~-~~~~~~~~i~~snts--~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~ 77 (290)
+|+++.+ .++|+|+-|+|-. .=.+++.++ ...+++++++.+-+| ..++..+.+.++...+|+|.|++.++....
T Consensus 83 ~~~~e~~~~~aDvVilavp~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~ 160 (304)
T PLN02256 83 RDPDDFCEEHPDVVLLCTSIL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGK 160 (304)
T ss_pred CCHHHHhhCCCCEEEEecCHH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCc
Confidence 4566665 4799999999843 446777887 456789999988888 567777877775556899999999886421
Q ss_pred ----eeeEee------CCCCCHHHHHHHHHHHHHhCCccEEEecc
Q psy17416 78 ----LVEIVP------AAWTSERVITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 78 ----lvEiv~------~~~t~~~~~~~~~~~~~~lgk~~v~v~~d 112 (290)
-..++. .+.++++.++.+.++++.+|..++.+..+
T Consensus 161 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~e 205 (304)
T PLN02256 161 GGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSCE 205 (304)
T ss_pred cccCCCeEEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHH
Confidence 011111 15678899999999999999999887543
No 152
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=97.37 E-value=0.0045 Score=56.43 Aligned_cols=140 Identities=18% Similarity=0.194 Sum_probs=85.9
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ .|.||..+|..+...|++|.++++.....+.+.. .| .. ..++++++
T Consensus 19 VGIIG---~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~-----------~G--------------~~-v~sl~Eaa 69 (335)
T PRK13403 19 VAVIG---YGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA-----------DG--------------FE-VMSVSEAV 69 (335)
T ss_pred EEEEe---EcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH-----------cC--------------CE-ECCHHHHH
Confidence 46666 8999999999999999999999865433222222 11 11 13788899
Q ss_pred ccCcEEEEccccchHHHHHHH-HHHhhhCCCCcEEEeCCCCcCHHHHhccCCCC--CcEEEeccCCCCCCCC--------
Q psy17416 194 EDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILSSSTSSFLPSVLSEHSTHR--SQFIVAHPVNPPYFIP-------- 262 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~--~r~ig~Hf~~p~~~~~-------- 262 (290)
+.||+|+.++|.. +. +.++ +++.+.++++++++-++ +..+ .... ...| ..++-.-|-.|-+..+
T Consensus 70 k~ADVV~llLPd~-~t-~~V~~~eil~~MK~GaiL~f~h-gfni-~~~~-i~pp~~vdv~mvaPKgpG~~vR~~y~~G~G 144 (335)
T PRK13403 70 RTAQVVQMLLPDE-QQ-AHVYKAEVEENLREGQMLLFSH-GFNI-HFGQ-INPPSYVDVAMVAPKSPGHLVRRVFQEGNG 144 (335)
T ss_pred hcCCEEEEeCCCh-HH-HHHHHHHHHhcCCCCCEEEECC-Ccce-ecCc-eeCCCCCeEEEECCCCCChHHHHHHHcCCC
Confidence 9999999999963 44 4665 57899999999886332 3322 1111 1111 2344444433333221
Q ss_pred ---eEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 263 ---LVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 263 ---lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
|+-|-. ..+-.+.+.+.++...+|-
T Consensus 145 vp~l~av~q--d~sg~a~~~ala~a~~iG~ 172 (335)
T PRK13403 145 VPALVAVHQ--DATGTALHVALAYAKGVGC 172 (335)
T ss_pred ceeEEEEEE--CCCCcHHHHHHHHHHHcCC
Confidence 222222 3344567778888888774
No 153
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.33 E-value=0.0019 Score=58.99 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=83.5
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.+|+.+|..+...|++|..||++++.... . .......++++++
T Consensus 139 vgIvG---~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~---------------------~------~~~~~~~~l~e~l 188 (312)
T PRK15469 139 IGILG---AGVLGSKVAQSLQTWGFPLRCWSRSRKSWPG---------------------V------QSFAGREELSAFL 188 (312)
T ss_pred EEEEC---CCHHHHHHHHHHHHCCCEEEEEeCCCCCCCC---------------------c------eeecccccHHHHH
Confidence 34444 7899999999999999999999986532110 0 0001135788899
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCC--CCcCHHHHhccCCC-CCcEEEeccC--------CCCCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST--SSFLPSVLSEHSTH-RSQFIVAHPV--------NPPYFIP 262 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t--s~~~~~~la~~~~~-~~r~ig~Hf~--------~p~~~~~ 262 (290)
++||+|+.++|...+.+.-+-++....++++++++... .-+.-..+...+.. +-+..++=-| +|.+..+
T Consensus 189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~ 268 (312)
T PRK15469 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHP 268 (312)
T ss_pred hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCC
Confidence 99999999999999887777777888899999887333 23333355555542 2222333211 2334556
Q ss_pred eEEEecCC
Q psy17416 263 LVEIVPAA 270 (290)
Q Consensus 263 lvEvv~~~ 270 (290)
.|-++|+-
T Consensus 269 nvi~TPHi 276 (312)
T PRK15469 269 RVAITPHV 276 (312)
T ss_pred CeEECCcC
Confidence 77788864
No 154
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.32 E-value=0.00019 Score=63.90 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=61.5
Q ss_pred CCcHHhhcccCcEEEE--------------cccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhccc----CC-C
Q psy17416 1 TPVLRECLEDAIFIQE--------------SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHS----TH-R 61 (290)
Q Consensus 1 ~~~l~~~~~~~d~vie--------------a~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~----~~-~ 61 (290)
++|++++++|||+|++ .+.++.++++++++++++.| |++++..-| -|..-++..+ .. |
T Consensus 61 ~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~t--NP~d~~t~~~~~~sg~~~ 137 (263)
T cd00650 61 TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVS--NPVDIITYLVWRYSGLPK 137 (263)
T ss_pred CCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec--CcHHHHHHHHHHHhCCCc
Confidence 5788999999999999 88899999999999999999 777544332 3555444333 22 5
Q ss_pred CceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 62 SQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 62 ~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
.|++|+. | -+....-..+++.+|..|-
T Consensus 138 ~kviG~~------------------~-ld~~r~~~~la~~l~v~~~ 164 (263)
T cd00650 138 EKVIGLG------------------T-LDPIRFRRILAEKLGVDPD 164 (263)
T ss_pred hhEEEee------------------c-chHHHHHHHHHHHhCCCcc
Confidence 7787775 4 4555566667777886443
No 155
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.27 E-value=0.0029 Score=54.05 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=64.2
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCC---HHHHHHHH---HHHHH-----HHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVL---SEQIENAK---NTIQH-----TLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~---~e~l~~a~---~~i~~-----~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
+|.+|..+|..+++.|. +++++|.+ +..+.+-. +.+.+ ....+.+. .+..........++ ..++
T Consensus 29 ~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~i---np~~~i~~~~~~i~-~~~~ 104 (200)
T TIGR02354 29 LGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEI---NPYTEIEAYDEKIT-EENI 104 (200)
T ss_pred cCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHH---CCCCEEEEeeeeCC-HhHH
Confidence 68999999999999998 79999998 55554311 00100 00000000 00000000111111 1345
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.+.++++|+||+| .++.+.|..+++++....+...+++
T Consensus 105 ~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 105 DKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred HHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 5568899999999 7999999999999999888877776
No 156
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.26 E-value=0.011 Score=53.65 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=55.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..++..+...|.+|.++|++++....+.. .|... + ...++.+.++++|+||.
T Consensus 160 ~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~-----------~G~~~-----------~-~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 160 FGRTGMTLARTLKALGANVTVGARKSAHLARITE-----------MGLSP-----------F-HLSELAEEVGKIDIIFN 216 (296)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCee-----------e-cHHHHHHHhCCCCEEEE
Confidence 6889999999999999999999999876544332 11100 0 12356667889999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
++|..+ +-++..+.++++++++
T Consensus 217 t~p~~~-----i~~~~l~~~~~g~vII 238 (296)
T PRK08306 217 TIPALV-----LTKEVLSKMPPEALII 238 (296)
T ss_pred CCChhh-----hhHHHHHcCCCCcEEE
Confidence 998432 2234445677888877
No 157
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.25 E-value=0.01 Score=58.14 Aligned_cols=123 Identities=20% Similarity=0.143 Sum_probs=79.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|+.+|..+...|.+|..||+.... +.+.. . .+... ++++.+++||+|+.
T Consensus 148 ~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~-----------~--------------g~~~~-~l~ell~~aDiV~l 200 (526)
T PRK13581 148 LGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQ-----------L--------------GVELV-SLDELLARADFITL 200 (526)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHh-----------c--------------CCEEE-cHHHHHhhCCEEEE
Confidence 6899999999999999999999985421 11111 0 11222 68888999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCC-CCcEEEeccC-------CCCCCCCeEEEecCCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTH-RSQFIVAHPV-------NPPYFIPLVEIVPAAW 271 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~-~~r~ig~Hf~-------~p~~~~~lvEvv~~~~ 271 (290)
++|-..+.+.-+-++..+.++++++++..+-+ +.-..+...+.. +-+-.++--| +|.+..+.|-++|+-.
T Consensus 201 ~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia 280 (526)
T PRK13581 201 HTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLG 280 (526)
T ss_pred ccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccc
Confidence 99988776555546777889999988743332 223355555432 2222233221 2444556777888743
No 158
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.24 E-value=0.00029 Score=64.06 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=65.6
Q ss_pred CcHHhhcccCcEEEEcc--------------cCChHHHHHHHHHHHhhcCCC-cEEeecCCCCChHHHhcccCC-CCcee
Q psy17416 2 PVLRECLEDAIFIQESV--------------PEILQIKHQVYRAIDIFMSSN-TILSSSTSSFLPSVLSEHSTH-RSQFI 65 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~--------------~e~~~~K~~~~~~~~~~~~~~-~i~~snts~~~~~~l~~~~~~-~~r~~ 65 (290)
+|. +++++||+||.++ .+|.++++++++++.+.+++. .|++||.+++-..-+....+. |+|++
T Consensus 63 ~d~-~~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~vi 141 (307)
T PRK06223 63 NDY-EDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVI 141 (307)
T ss_pred CCH-HHHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEE
Confidence 566 4799999999876 589999999999999999776 577788877666655554443 36677
Q ss_pred eeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEE
Q psy17416 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVT 108 (290)
Q Consensus 66 g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~ 108 (290)
|+- |..++...-..++++++..|-.
T Consensus 142 G~g------------------t~lds~r~~~~la~~l~v~~~~ 166 (307)
T PRK06223 142 GMA------------------GVLDSARFRTFIAEELNVSVKD 166 (307)
T ss_pred EeC------------------CCcHHHHHHHHHHHHhCcChhh
Confidence 663 5556667777788888875543
No 159
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.15 E-value=0.0099 Score=51.66 Aligned_cols=136 Identities=19% Similarity=0.233 Sum_probs=85.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||..+...+...|++|+.||++++..+.+.. .| .++..+..+... -+..--.|-.
T Consensus 8 LGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~-----------~g-a~~a~sl~el~~----------~L~~pr~vWl 65 (300)
T COG1023 8 LGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD-----------EG-ATGAASLDELVA----------KLSAPRIVWL 65 (300)
T ss_pred cchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh-----------cC-CccccCHHHHHH----------hcCCCcEEEE
Confidence 7899999999999999999999999999888776 22 122111111111 1223344445
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEe-CCCCcCHH-HHhccCCCCCcEEEeccCCCCCC-------CCeEEEecCCCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSS-STSSFLPS-VLSEHSTHRSQFIVAHPVNPPYF-------IPLVEIVPAAWT 272 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s-~ts~~~~~-~la~~~~~~~r~ig~Hf~~p~~~-------~~lvEvv~~~~t 272 (290)
.+|-- ++-.+++.+|.+.+.++-+++- ..|.+.-+ .-+..+..+ |+||++.-.- .-..-++.|
T Consensus 66 MvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~k----gi~flD~GTSGG~~G~~~G~~lMiGG--- 137 (300)
T COG1023 66 MVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEK----GIHFLDVGTSGGVWGAERGYCLMIGG--- 137 (300)
T ss_pred EccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhc----CCeEEeccCCCCchhhhcCceEEecC---
Confidence 55533 1356888999999999888873 23333222 222223222 7787543211 113446666
Q ss_pred CHHHHHHHHHHHHHc
Q psy17416 273 SERVITRTREIMTEI 287 (290)
Q Consensus 273 ~~e~~~~~~~~~~~l 287 (290)
++++++++..+++.+
T Consensus 138 ~~~a~~~~~pif~~l 152 (300)
T COG1023 138 DEEAVERLEPIFKAL 152 (300)
T ss_pred cHHHHHHHHHHHHhh
Confidence 899999999999876
No 160
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.12 E-value=0.0046 Score=50.79 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=56.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|..|+.+|+.+...|..|.+++.+|...-+|.- ++ .+ +.++++++..+|++|-
T Consensus 31 YG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~---------------dG----------f~-v~~~~~a~~~adi~vt 84 (162)
T PF00670_consen 31 YGKVGKGIARALRGLGARVTVTEIDPIRALQAAM---------------DG----------FE-VMTLEEALRDADIFVT 84 (162)
T ss_dssp -SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH---------------TT-----------E-EE-HHHHTTT-SEEEE
T ss_pred CCcccHHHHHHHhhCCCEEEEEECChHHHHHhhh---------------cC----------cE-ecCHHHHHhhCCEEEE
Confidence 6899999999999999999999999976544433 12 12 3467889999999998
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC---cCHHHHhcc
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS---FLPSVLSEH 242 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~la~~ 242 (290)
++-..--+..+-| +.+++++|+++.++. +.+..+.+.
T Consensus 85 aTG~~~vi~~e~~----~~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 85 ATGNKDVITGEHF----RQMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp -SSSSSSB-HHHH----HHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred CCCCccccCHHHH----HHhcCCeEEeccCcCceeEeecccccc
Confidence 7764332233333 358999999854442 344455443
No 161
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.08 E-value=0.0027 Score=51.99 Aligned_cols=135 Identities=19% Similarity=0.189 Sum_probs=83.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSE-QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e-~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|..|...|+.|...|++|.+-.+... ..++|.+ .|+ + ..+.+|+++.+|+|+
T Consensus 12 yGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~-----------~Gf--------------~-v~~~~eAv~~aDvV~ 65 (165)
T PF07991_consen 12 YGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKA-----------DGF--------------E-VMSVAEAVKKADVVM 65 (165)
T ss_dssp -SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHH-----------TT---------------E-CCEHHHHHHC-SEEE
T ss_pred CChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHH-----------CCC--------------e-eccHHHHHhhCCEEE
Confidence 578899999999999999998777665 5555555 222 1 357788999999999
Q ss_pred EccccchHHHHHHH-HHHhhhCCCCcEEEeCCCCcCHHHHhccCCCC--CcEEEeccCCCCCCCC-----------eEEE
Q psy17416 201 ESVPEILQIKHQVY-RAIDIFMSSNTILSSSTSSFLPSVLSEHSTHR--SQFIVAHPVNPPYFIP-----------LVEI 266 (290)
Q Consensus 201 eavpe~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~--~r~ig~Hf~~p~~~~~-----------lvEv 266 (290)
..+|+.. -.++| +++.+.++++..+.. +.++.+- ......| ..++-.+|-.|-+..+ ++-|
T Consensus 66 ~L~PD~~--q~~vy~~~I~p~l~~G~~L~f-ahGfni~--~~~i~pp~~vdV~mvAPKgpG~~vR~~y~~G~Gvp~l~AV 140 (165)
T PF07991_consen 66 LLLPDEV--QPEVYEEEIAPNLKPGATLVF-AHGFNIH--YGLIKPPKDVDVIMVAPKGPGHLVRREYVEGRGVPALIAV 140 (165)
T ss_dssp E-S-HHH--HHHHHHHHHHHHS-TT-EEEE-SSSHHHH--CTTS---TTSEEEEEEESSSCHHHHHHHHCCTS--EEEEE
T ss_pred EeCChHH--HHHHHHHHHHhhCCCCCEEEe-CCcchhh--cCcccCCCCCeEEEEecCCCChHHHHHHHcCCCceEEEEE
Confidence 9999777 66888 789999999998863 3344432 1222222 4567777755554322 2222
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 267 VPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 267 v~~~~t~~e~~~~~~~~~~~lgk 289 (290)
- ...+-.+.+.+.++.+.+|-
T Consensus 141 ~--qD~sg~A~~~ala~A~~iG~ 161 (165)
T PF07991_consen 141 H--QDASGKAKELALAYAKAIGG 161 (165)
T ss_dssp E--E-SSS-HHHHHHHHHHHTTH
T ss_pred E--ECCCchHHHHHHHHHHHhCC
Confidence 2 34456777888888888773
No 162
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.06 E-value=0.0059 Score=59.81 Aligned_cols=124 Identities=21% Similarity=0.103 Sum_probs=78.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|+.+|..+...|.+|..||+.... +.+.. . .+...+++++.+++||+|+.
T Consensus 146 ~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~-----------~--------------g~~~~~~l~ell~~aDvV~l 199 (525)
T TIGR01327 146 LGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQ-----------L--------------GVELVDDLDELLARADFITV 199 (525)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHh-----------c--------------CCEEcCCHHHHHhhCCEEEE
Confidence 6899999999999999999999975211 11111 1 11224578889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCc--CHHHHhccCCC-CCcEEEecc-------CCCCCCCCeEEEecCCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF--LPSVLSEHSTH-RSQFIVAHP-------VNPPYFIPLVEIVPAAW 271 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~la~~~~~-~~r~ig~Hf-------~~p~~~~~lvEvv~~~~ 271 (290)
++|-..+.+.-+=++....++++++++..+-+- .-..+...+.. +-+..++=- -+|.+..+.|-++|+-.
T Consensus 200 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia 279 (525)
T TIGR01327 200 HTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLG 279 (525)
T ss_pred ccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCcc
Confidence 999877665444456666899999887333332 23355555432 222222221 23445566777888743
No 163
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.02 E-value=0.012 Score=53.90 Aligned_cols=129 Identities=18% Similarity=0.156 Sum_probs=81.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.+|..+...|.+|..||+.... . . . . ..++++.++.||+|+.
T Consensus 156 ~G~IG~~vA~~l~~fgm~V~~~~~~~~~-----~----------------~-~---------~-~~~l~ell~~sDiv~l 203 (317)
T PRK06487 156 HGELGGAVARLAEAFGMRVLIGQLPGRP-----A----------------R-P---------D-RLPLDELLPQVDALTL 203 (317)
T ss_pred CCHHHHHHHHHHhhCCCEEEEECCCCCc-----c----------------c-c---------c-ccCHHHHHHhCCEEEE
Confidence 6899999999999899999999975310 0 0 0 0 2368889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC--HHHHhccCCC-CCcEEEeccC--------CCCCC--CCeEEEec
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTH-RSQFIVAHPV--------NPPYF--IPLVEIVP 268 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~la~~~~~-~~r~ig~Hf~--------~p~~~--~~lvEvv~ 268 (290)
++|-+.+-+.-+=++.-..++++++++..+-+-. -..+...+.. +-+-.++=-| +|.+. .|.|-++|
T Consensus 204 ~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTP 283 (317)
T PRK06487 204 HCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTP 283 (317)
T ss_pred CCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECC
Confidence 9998887655555677778999999974333333 3355555542 2222222211 12221 56777888
Q ss_pred CCC-CCHHHHHHHHH
Q psy17416 269 AAW-TSERVITRTRE 282 (290)
Q Consensus 269 ~~~-t~~e~~~~~~~ 282 (290)
+-. .+.+..+++..
T Consensus 284 Hia~~t~e~~~~~~~ 298 (317)
T PRK06487 284 HSAWGSREARQRIVG 298 (317)
T ss_pred ccccCCHHHHHHHHH
Confidence 743 34444444433
No 164
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.97 E-value=0.021 Score=52.06 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=70.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|..+|..++..|++|.++++++. + +.. +.|..................++.+ ....+|+||.
T Consensus 13 ~GaiG~~lA~~L~~~g~~V~~~~r~~~--~-~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vil 78 (313)
T PRK06249 13 TGAIGGFYGAMLARAGFDVHFLLRSDY--E-AVR----------ENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLV 78 (313)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEeCCH--H-HHH----------hCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEE
Confidence 799999999999999999999999763 2 221 1221110000000001122234444 3678999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHH-HhccCCCCCcEEE
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV-LSEHSTHRSQFIV 251 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~-la~~~~~~~r~ig 251 (290)
|++... -.++++.+.+.+.+++++.+-.-++...+ +...++ +.++++
T Consensus 79 avK~~~--~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~ 126 (313)
T PRK06249 79 GLKTTA--NALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLG 126 (313)
T ss_pred EecCCC--hHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEE
Confidence 999665 35788889999988888877666666544 443433 335443
No 165
>PLN02928 oxidoreductase family protein
Probab=96.92 E-value=0.009 Score=55.41 Aligned_cols=153 Identities=13% Similarity=-0.004 Sum_probs=88.7
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+-|+++ +|.+|+.+|..+...|.+|..||++...-.. . . .+...... ...........++++.
T Consensus 161 tvGIiG---~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~--~----~------~~~~~~~~--~~~~~~~~~~~~L~el 223 (347)
T PLN02928 161 TVFILG---YGAIGIELAKRLRPFGVKLLATRRSWTSEPE--D----G------LLIPNGDV--DDLVDEKGGHEDIYEF 223 (347)
T ss_pred EEEEEC---CCHHHHHHHHHHhhCCCEEEEECCCCChhhh--h----h------hccccccc--cccccccCcccCHHHH
Confidence 344554 7999999999999999999999987321110 0 0 00000000 0000000023578899
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC--HHHHhccCCC-CCcEEEeccC--------CCCCCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTH-RSQFIVAHPV--------NPPYFI 261 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~la~~~~~-~~r~ig~Hf~--------~p~~~~ 261 (290)
+++||+|+.++|-+.+-+.-+-++....++++++|+...-+-. -..+...+.. +-...++=-| +|.+..
T Consensus 224 l~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~ 303 (347)
T PLN02928 224 AGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKH 303 (347)
T ss_pred HhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcC
Confidence 9999999999998877655555677778999999974333333 3355555432 2222222222 234556
Q ss_pred CeEEEecCCC-CCHHHHHHHHH
Q psy17416 262 PLVEIVPAAW-TSERVITRTRE 282 (290)
Q Consensus 262 ~lvEvv~~~~-t~~e~~~~~~~ 282 (290)
+.|-++|+-. ...+..+++..
T Consensus 304 ~nviiTPHia~~t~~~~~~~~~ 325 (347)
T PLN02928 304 PNVIITPHVAGVTEYSYRSMGK 325 (347)
T ss_pred CCEEECCcCCCChHHHHHHHHH
Confidence 7888888753 34444444433
No 166
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.88 E-value=0.014 Score=52.37 Aligned_cols=105 Identities=13% Similarity=0.177 Sum_probs=82.6
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCC-CCeee
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-IPLVE 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~-~~lvE 80 (290)
++..+.+++||+||=|++-+- + .+++..+.....++.++.|-.+++++..+.+......++++.|+..|... ..+.=
T Consensus 57 ~~~~e~~~~aDvVilav~p~~-~-~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~ 134 (279)
T PRK07679 57 HNKKELLTDANILFLAMKPKD-V-AEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATA 134 (279)
T ss_pred CCHHHHHhcCCEEEEEeCHHH-H-HHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEE
Confidence 466778899999999998443 2 34567887777889999998899999999988765567999998766544 34554
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+..+...+++.++.+..++..+|+ ++.+
T Consensus 135 ~~~~~~~~~~~~~~v~~l~~~~G~-~~~v 162 (279)
T PRK07679 135 ISPSKHATAEHIQTAKALFETIGL-VSVV 162 (279)
T ss_pred EeeCCCCCHHHHHHHHHHHHhCCc-EEEe
Confidence 457777889999999999999998 6666
No 167
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.85 E-value=0.0019 Score=54.06 Aligned_cols=109 Identities=20% Similarity=0.142 Sum_probs=70.9
Q ss_pred EEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccC
Q psy17416 107 VTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGT 186 (290)
Q Consensus 107 v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ 186 (290)
..+.+-+-|.++ .|.+|+.+|..+...|.+|..||++......... ... ..
T Consensus 32 ~~l~g~tvgIiG---~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~-------------------------~~~-~~ 82 (178)
T PF02826_consen 32 RELRGKTVGIIG---YGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE-------------------------FGV-EY 82 (178)
T ss_dssp S-STTSEEEEES---TSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH-------------------------TTE-EE
T ss_pred cccCCCEEEEEE---EcCCcCeEeeeeecCCceeEEecccCChhhhccc-------------------------ccc-ee
Confidence 334333445555 7999999999999999999999999875441111 011 13
Q ss_pred CchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCC
Q psy17416 187 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHST 244 (290)
Q Consensus 187 ~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~ 244 (290)
.++++.++.||+|+.++|-+.+-+.-+=++.-..++++++++...-+-.+. .+.+.+.
T Consensus 83 ~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 83 VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 588889999999999999766544434456677899999998544333333 4555443
No 168
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=96.77 E-value=0.0087 Score=53.60 Aligned_cols=104 Identities=23% Similarity=0.185 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccc
Q psy17416 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVP 204 (290)
Q Consensus 125 ~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavp 204 (290)
+|..+|..|.+.|++|++++++ +..+...+ .|..-...........+..++++++ +...|+||.|++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~-----------~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vK 68 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQ-----------EGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVK 68 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHH-----------CCcEEEecCCcEEEcccccccChhh-cCCCCEEEEecc
Confidence 6788888999999999999996 44433222 2321100000000012334556665 678999999999
Q ss_pred cchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHH-HhccC
Q psy17416 205 EILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV-LSEHS 243 (290)
Q Consensus 205 e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~-la~~~ 243 (290)
... -.+.++.+.+.+.++++|.+-.-++...+ +....
T Consensus 69 s~~--~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~ 106 (293)
T TIGR00745 69 AYQ--TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELL 106 (293)
T ss_pred chh--HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHh
Confidence 764 46788899999999888887655665443 44433
No 169
>PRK15076 alpha-galactosidase; Provisional
Probab=96.73 E-value=0.0071 Score=57.73 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=42.2
Q ss_pred cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcccc
Q psy17416 136 AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPE 205 (290)
Q Consensus 136 ~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe 205 (290)
.|.+|.++|++++.++.+...+++.+... + ...+++.++|+.+++++||+||+++-.
T Consensus 29 ~~~evvLvDid~er~~~~~~l~~~~~~~~---~----------~~~~i~~ttD~~eal~dADfVv~ti~v 85 (431)
T PRK15076 29 RDAEIALMDIDPERLEESEIVARKLAESL---G----------ASAKITATTDRREALQGADYVINAIQV 85 (431)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHhc---C----------CCeEEEEECCHHHHhCCCCEEeEeeee
Confidence 45699999999999887666555554321 1 124677789988899999999998765
No 170
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.72 E-value=0.012 Score=52.61 Aligned_cols=103 Identities=21% Similarity=0.270 Sum_probs=72.5
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccC--CCCceeeeccCC------CCC
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST--HRSQFIVAHPVN------PPY 74 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~--~~~r~~g~hf~~------P~~ 74 (290)
+++++ .+||+||-|+|.+. -.+++.++.. +++++++..-+|+ ...+...+. .+.+|++.|+.. |..
T Consensus 52 ~~~~~-~~aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs~--k~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~ 125 (275)
T PRK08507 52 SFEEL-KKCDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGST--KAKIIESVPKHIRKNFIAAHPMAGTENSGPKA 125 (275)
T ss_pred CHHHH-hcCCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECccc--hHHHHHHHHHhcCCCEEecCCcCcCchhhHHh
Confidence 45554 46999999998765 3557788877 7888888764443 223333221 236899999974 322
Q ss_pred ------CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEec
Q psy17416 75 ------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTT 111 (290)
Q Consensus 75 ------~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~ 111 (290)
.-..+-++++..++++.++.+..+++.+|..++.+..
T Consensus 126 a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 126 AIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred ccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 1235566777788999999999999999998888743
No 171
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.71 E-value=0.036 Score=48.41 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=79.7
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|+++.+.++|+|+=|+|-. .=.++++++....+ +.++.|.+.++++..|...++...+++-+|+..|.....-+-.
T Consensus 58 ~~~~~~~~~~DiViiavp~~--~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~ 134 (245)
T PRK07634 58 TDWKQHVTSVDTIVLAMPPS--AHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISL 134 (245)
T ss_pred CChHHHHhcCCEEEEecCHH--HHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeE
Confidence 57788899999999999965 33778888877655 5688999999999999998876567777887666543322222
Q ss_pred -eeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 82 -VPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 82 -v~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
..+...+++..+.+.+++..+|.... +
T Consensus 135 ~~~~~~~~~~~~~~v~~lf~~~G~~~~-~ 162 (245)
T PRK07634 135 YTMGQSVNETHKETLQLILKGIGTSQL-C 162 (245)
T ss_pred EeeCCCCCHHHHHHHHHHHHhCCCEEE-E
Confidence 24455688999999999999999775 5
No 172
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=96.67 E-value=0.013 Score=51.96 Aligned_cols=104 Identities=18% Similarity=0.266 Sum_probs=73.8
Q ss_pred HhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCC--CChHHHhcccCCCCceeeeccCCCC---------
Q psy17416 5 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTHRSQFIVAHPVNPP--------- 73 (290)
Q Consensus 5 ~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~--~~~~~l~~~~~~~~r~~g~hf~~P~--------- 73 (290)
.++++++|+||=|+|- +.=.++++++....++++++.--+|. -++..+........+|+|.|++.=+
T Consensus 40 ~~~~~~~DlvvlavP~--~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~ 117 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPV--SAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAAD 117 (258)
T ss_dssp HHHGGCCSEEEE-S-H--HHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-T
T ss_pred HhHhcCCCEEEEcCCH--HHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhc
Confidence 4679999999999974 45678999999999999999866554 2333444455456899999998766
Q ss_pred -CC--CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 74 -YF--IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 74 -~~--~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
.+ -..+=++++..++++.++.+.+|++.+|-.++.+.
T Consensus 118 ~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 118 ADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEMD 157 (258)
T ss_dssp TTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE--
T ss_pred ccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEcC
Confidence 21 24566778888999999999999999999888764
No 173
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=96.65 E-value=0.012 Score=53.41 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=79.7
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccC----CCCceeeeccCCCCC--C
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST----HRSQFIVAHPVNPPY--F 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~----~~~r~~g~hf~~P~~--~ 75 (290)
++..++.+++|+||=++|..-.. .+++..+-..+++++++ .++||+++..+...+. ...+=+|+--|+|+- -
T Consensus 73 aS~aEAAa~ADVVIL~LPd~aaV-~eVl~GLaa~L~~GaIV-ID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 73 SDDKEAAKHGEIHVLFTPFGKGT-FSIARTIIEHVPENAVI-CNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred CCHHHHHhCCCEEEEecCCHHHH-HHHHHHHHhcCCCCCEE-EECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 57888999999999999955545 44567777778888877 5678888886665443 245567777777763 2
Q ss_pred CCee--eEeeC------CCCCHHHHHHHHHHHHHhCCccEEEeccceee
Q psy17416 76 IPLV--EIVPA------AWTSERVITRTREIMTEIGMKPVTLTTEIRGF 116 (290)
Q Consensus 76 ~~lv--Eiv~~------~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf 116 (290)
|+-= -++.| ...+++.++.+.++++..||.+..+..+.-+-
T Consensus 151 ~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~ 199 (341)
T TIGR01724 151 TPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSA 199 (341)
T ss_pred CCCCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcch
Confidence 3222 22222 33478999999999999999999986554333
No 174
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.63 E-value=0.0042 Score=50.21 Aligned_cols=111 Identities=15% Similarity=0.120 Sum_probs=65.1
Q ss_pred cchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|.+|..++..+...| ..|.++|++++..++..+.+... + .. ....+..+.+.++|+||
T Consensus 27 ~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-------~-~~------------~~~~~~~~~~~~~Dvvi 86 (155)
T cd01065 27 AGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-------G-IA------------IAYLDLEELLAEADLII 86 (155)
T ss_pred CcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-------c-cc------------eeecchhhccccCCEEE
Confidence 5889999999998885 78999999998776544422210 0 00 01245555678999999
Q ss_pred EccccchH-HHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCC-CCCcEEEecc
Q psy17416 201 ESVPEILQ-IKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST-HRSQFIVAHP 254 (290)
Q Consensus 201 eavpe~~~-~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~-~~~r~ig~Hf 254 (290)
.|+|.... .....+. ...+++++++...++....+++..... .-.+++..|.
T Consensus 87 ~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~ 140 (155)
T cd01065 87 NTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLE 140 (155)
T ss_pred eCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHH
Confidence 99998763 1111111 123577887763332222224444433 2235555554
No 175
>KOG2711|consensus
Probab=96.60 E-value=0.0052 Score=55.84 Aligned_cols=109 Identities=15% Similarity=0.101 Sum_probs=76.8
Q ss_pred cchhHHHHHHHHHHc-------CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASA-------GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~-------G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
.|.||+.+|..+.+. ...|.+|-...+.-.+ .+.+...... ......+++....+.++..++|+.+++.
T Consensus 29 sGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~---~heN~KYlpg~~lP~NvvAv~dl~ea~~ 104 (372)
T KOG2711|consen 29 SGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINS---RHENVKYLPGIKLPENVVAVPDLVEAAK 104 (372)
T ss_pred cChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhcc---ccccccccCCccCCCCeEecchHHHHhc
Confidence 689999999887642 1367777655443332 1111111111 1111234556667788888999999999
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP 236 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 236 (290)
|||++|.++|-+. ...++++|..+.++++.-+|-++++..
T Consensus 105 dADilvf~vPhQf--~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 105 DADILVFVVPHQF--IPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred cCCEEEEeCChhh--HHHHHHHHhcccCCCCeEEEeecceec
Confidence 9999999999877 679999999999999998887777664
No 176
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.49 E-value=0.013 Score=53.39 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=59.2
Q ss_pred cchhHHHHHHHHHHcC--ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G--~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..+|..++..| .++.++|++++..+.....+.+.... .+ ....+. ..+++ .+++||+|
T Consensus 8 aG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~-------~~------~~~~i~-~~~~~-~l~~aDIV 72 (306)
T cd05291 8 AGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF-------LP------SPVKIK-AGDYS-DCKDADIV 72 (306)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc-------cC------CCeEEE-cCCHH-HhCCCCEE
Confidence 6889999999999888 58999999988765444433322110 00 001122 34555 47999999
Q ss_pred EEcccc--------------chHHHHHHHHHHhhhCCCCcEE
Q psy17416 200 QESVPE--------------ILQIKHQVYRAIDIFMSSNTIL 227 (290)
Q Consensus 200 ieavpe--------------~~~~k~~~~~~l~~~~~~~~ii 227 (290)
|.+... |..+-+++.+++.+..+...+|
T Consensus 73 Iitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vi 114 (306)
T cd05291 73 VITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFL 114 (306)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 998875 3445567777888877654433
No 177
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.47 E-value=0.02 Score=54.30 Aligned_cols=121 Identities=20% Similarity=0.175 Sum_probs=78.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|+.+|..+...|.+|..||+.+... . .......++++.++.||+|+.
T Consensus 159 ~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~-------------~~~~~~~~l~ell~~sDiVsl 209 (409)
T PRK11790 159 YGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------L-------------GNARQVGSLEELLAQSDVVSL 209 (409)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCcccc----------------c-------------CCceecCCHHHHHhhCCEEEE
Confidence 68999999999999999999999753210 0 011224588999999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCC-CCcEEEec-c-C----------CCCCCCCeEEE
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTH-RSQFIVAH-P-V----------NPPYFIPLVEI 266 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~-~~r~ig~H-f-~----------~p~~~~~lvEv 266 (290)
++|-..+-+.-+=++....++++++++..+-+ +.-..+...+.. +-+-.++= | . +|.+..+.|-+
T Consensus 210 h~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvil 289 (409)
T PRK11790 210 HVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVIL 289 (409)
T ss_pred cCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEE
Confidence 99988776555546677789999998733322 223344444432 22222221 1 1 23445577778
Q ss_pred ecCCC
Q psy17416 267 VPAAW 271 (290)
Q Consensus 267 v~~~~ 271 (290)
+|+-.
T Consensus 290 TPHia 294 (409)
T PRK11790 290 TPHIG 294 (409)
T ss_pred CCcCC
Confidence 88743
No 178
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.46 E-value=0.011 Score=47.66 Aligned_cols=109 Identities=20% Similarity=0.205 Sum_probs=68.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCC-CCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCL-KGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~-~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|.+|.-+|..|.+.|++|.++++.+ .++...+ .|.. ... .............+..+.....|+||
T Consensus 6 ~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~-----------~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 6 AGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE-----------QGLTITGP-DGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH-----------HCEEEEET-TEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred cCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh-----------eeEEEEec-ccceecccccccCcchhccCCCcEEE
Confidence 68999999999999999999999988 6554322 2221 111 00111111111122222457899999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH-HHhccCCC
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-VLSEHSTH 245 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~-~la~~~~~ 245 (290)
.|+...- -.+.++.+.+.+.+++.|.+---++... .+.+..+.
T Consensus 73 v~vKa~~--~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~ 116 (151)
T PF02558_consen 73 VAVKAYQ--LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPR 116 (151)
T ss_dssp E-SSGGG--HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTG
T ss_pred EEecccc--hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCC
Confidence 9998655 4578889999999997777655556644 45445433
No 179
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=96.39 E-value=0.16 Score=44.74 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=79.8
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCC-Ceee
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFI-PLVE 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~-~lvE 80 (290)
+|..+.++++|+||=||+ +-. =.+++.++.....++.++.|-..++++.+|...++...+++-+=+..|...- -..=
T Consensus 35 ~~~~e~~~~aDiIiLaVk-P~~-i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~ 112 (245)
T TIGR00112 35 SDAQEAVKEADVVFLAVK-PQD-LEEVLSELKSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTA 112 (245)
T ss_pred CChHHHHhhCCEEEEEeC-HHH-HHHHHHHHhhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEE
Confidence 466677889999999998 444 4577888887677889999999999999999988643456554444444332 3444
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
+..+...+++-.+.+.+++..+|+ ++.+.
T Consensus 113 ~~~~~~~~~~~~~~v~~lf~~~G~-~~~v~ 141 (245)
T TIGR00112 113 IAANANVSEEDRALVLALFKAVGE-VVELP 141 (245)
T ss_pred EecCCCCCHHHHHHHHHHHHhCCC-EEEEC
Confidence 556777888889999999999997 66663
No 180
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.39 E-value=0.01 Score=55.72 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=66.5
Q ss_pred ccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchH
Q psy17416 111 TEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 190 (290)
Q Consensus 111 ~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~ 190 (290)
+-+-|+++ .|.+|+.+|..+...|++|..||+..... . + .. ...+++
T Consensus 116 gktvGIIG---~G~IG~~va~~l~a~G~~V~~~Dp~~~~~----~----------------~---------~~-~~~~l~ 162 (381)
T PRK00257 116 ERTYGVVG---AGHVGGRLVRVLRGLGWKVLVCDPPRQEA----E----------------G---------DG-DFVSLE 162 (381)
T ss_pred cCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCccccc----c----------------c---------Cc-cccCHH
Confidence 34456666 79999999999999999999999753210 0 0 00 124688
Q ss_pred hhcccCcEEEEccccchH---HHHHHH-HHHhhhCCCCcEEEeCCCCcCH--HHHhccC
Q psy17416 191 ECLEDAIFIQESVPEILQ---IKHQVY-RAIDIFMSSNTILSSSTSSFLP--SVLSEHS 243 (290)
Q Consensus 191 ~~l~~aDlVieavpe~~~---~k~~~~-~~l~~~~~~~~ii~s~ts~~~~--~~la~~~ 243 (290)
+.+++||+|+.++|-..+ .-+.++ ++....++++++++..+-+-.+ ..+.+.+
T Consensus 163 ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL 221 (381)
T PRK00257 163 RILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREAL 221 (381)
T ss_pred HHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH
Confidence 888999999999996543 122333 4566678999998743333333 3444444
No 181
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.39 E-value=0.025 Score=45.45 Aligned_cols=91 Identities=18% Similarity=0.245 Sum_probs=56.6
Q ss_pred chhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 123 GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
|..|..++..+...|+ ++.++|.+++.++.-...+++.... .........+..+++++||+||
T Consensus 10 G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~---------------~~~~~~i~~~~~~~~~~aDivv 74 (141)
T PF00056_consen 10 GNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAP---------------LPSPVRITSGDYEALKDADIVV 74 (141)
T ss_dssp SHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHG---------------STEEEEEEESSGGGGTTESEEE
T ss_pred ChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhh---------------cccccccccccccccccccEEE
Confidence 8899999999888765 7999999987544333323222110 0012222334445689999999
Q ss_pred Ecccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 201 ESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 201 eavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.+.-. |..+-+++.+++.+..+...++.
T Consensus 75 itag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~viv 116 (141)
T PF00056_consen 75 ITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIV 116 (141)
T ss_dssp ETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE
T ss_pred EeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEE
Confidence 87733 23355666677888885554443
No 182
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.38 E-value=0.038 Score=49.67 Aligned_cols=106 Identities=16% Similarity=0.278 Sum_probs=79.5
Q ss_pred HhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCC--hHHHhcccCCCCceeeeccCCCCC------CC
Q psy17416 5 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTHRSQFIVAHPVNPPY------FI 76 (290)
Q Consensus 5 ~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~--~~~l~~~~~~~~r~~g~hf~~P~~------~~ 76 (290)
.++.++||+||=||| +..=-++++++....++++++.=-||.=. +..+......-.+|+|.|++.=+. ..
T Consensus 59 ~~~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~ 136 (279)
T COG0287 59 AEAAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFEN 136 (279)
T ss_pred hhhcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCC
Confidence 567889999999997 56667899999999999999997776532 233333332212899999987661 22
Q ss_pred CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecc
Q psy17416 77 PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 77 ~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d 112 (290)
..+=+.+++.++.+.+..+.++++.+|-..+.+..+
T Consensus 137 ~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~e 172 (279)
T COG0287 137 AVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAE 172 (279)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcChH
Confidence 445567777888999999999999999888877443
No 183
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.37 E-value=0.074 Score=48.15 Aligned_cols=160 Identities=11% Similarity=0.091 Sum_probs=101.7
Q ss_pred cEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCCC
Q psy17416 12 IFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAW 86 (290)
Q Consensus 12 d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~~ 86 (290)
+.-+...+|+..- .++++.|+++-.+ |-|+.--- .++.-.++......-..+=|+|+.|-..++.= .+.
T Consensus 63 ~~~~~~l~~~~~~-~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~-----~~~ 136 (296)
T PRK14188 63 ASFEHKLPADTSQ-AELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAGRLATG-----ETA 136 (296)
T ss_pred EEEEEECCCCCCH-HHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcccccccCChhhHHHHhCC-----CCC
Confidence 3334445555433 4677777777554 35666544 46677788888876677779999887653311 111
Q ss_pred CCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEec-CCHHHHHHHHHHHHHHHHHHH
Q psy17416 87 TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYD-VLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 87 t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d-~~~e~l~~a~~~i~~~~~~~~ 165 (290)
--|.|-..+.++++..+- + + ..-.-.+++| .+.||..+|.++.+.|++|++|+ +++
T Consensus 137 ~~PcTp~ai~~ll~~~~i-~--~-~Gk~V~viGr-s~~mG~PmA~~L~~~g~tVtv~~~rT~------------------ 193 (296)
T PRK14188 137 LVPCTPLGCMMLLRRVHG-D--L-SGLNAVVIGR-SNLVGKPMAQLLLAANATVTIAHSRTR------------------ 193 (296)
T ss_pred CcCCCHHHHHHHHHHhCC-C--C-CCCEEEEEcC-CcchHHHHHHHHHhCCCEEEEECCCCC------------------
Confidence 224455555666666542 1 1 1112234556 68999999999999999999995 432
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
++++.++.||+||-|++..-.++.. .+++|++++.
T Consensus 194 ----------------------~l~e~~~~ADIVIsavg~~~~v~~~-------~lk~GavVID 228 (296)
T PRK14188 194 ----------------------DLPAVCRRADILVAAVGRPEMVKGD-------WIKPGATVID 228 (296)
T ss_pred ----------------------CHHHHHhcCCEEEEecCChhhcchh-------eecCCCEEEE
Confidence 2344678899999999965433222 2789998873
No 184
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.34 E-value=0.012 Score=55.20 Aligned_cols=116 Identities=15% Similarity=0.120 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy17416 92 ITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK 171 (290)
Q Consensus 92 ~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~ 171 (290)
+..+..+.++.|. .+.+-+-|+++ .|.+|+.+|..+...|.+|..||+.... .
T Consensus 100 ~~~lL~l~r~~g~---~L~gktvGIIG---~G~IG~~vA~~l~a~G~~V~~~dp~~~~-----~---------------- 152 (378)
T PRK15438 100 FSSLLMLAERDGF---SLHDRTVGIVG---VGNVGRRLQARLEALGIKTLLCDPPRAD-----R---------------- 152 (378)
T ss_pred HHHHHHHhccCCC---CcCCCEEEEEC---cCHHHHHHHHHHHHCCCEEEEECCcccc-----c----------------
Confidence 3444444554443 34455667776 8999999999999999999999964211 0
Q ss_pred CCCChhhhhcccccCCchHhhcccCcEEEEccccchHH---HHHHH-HHHhhhCCCCcEEEeCCCCcCH--HHHhccC
Q psy17416 172 GSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQI---KHQVY-RAIDIFMSSNTILSSSTSSFLP--SVLSEHS 243 (290)
Q Consensus 172 ~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~---k~~~~-~~l~~~~~~~~ii~s~ts~~~~--~~la~~~ 243 (290)
+. .. ...++++.+++||+|+.++|-..+- -+.++ ++....++++++++..+-+-.+ ..+.+.+
T Consensus 153 ~~--------~~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL 221 (378)
T PRK15438 153 GD--------EG-DFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCL 221 (378)
T ss_pred cc--------cc-ccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHH
Confidence 00 00 1357888899999999999955431 11223 4566678999999743333333 2444444
No 185
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.26 E-value=0.15 Score=47.62 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=89.4
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh-
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC- 192 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~- 192 (290)
-|.++ ++.||..+|..++++|+.|.+|+|+.+..++.++... . ..+|..+.++++-
T Consensus 6 iGviG---LaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~----------~----------~k~i~~~~sieefV 62 (473)
T COG0362 6 IGVIG---LAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERA----------K----------GKNIVPAYSIEEFV 62 (473)
T ss_pred eeeEe---hhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCc----------c----------CCCccccCcHHHHH
Confidence 45665 8999999999999999999999999998887766211 0 0234445555543
Q ss_pred --cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeC-CCCcCHH-HHhccC-CCCCcEEEecc-------CCCCCC
Q psy17416 193 --LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS-TSSFLPS-VLSEHS-THRSQFIVAHP-------VNPPYF 260 (290)
Q Consensus 193 --l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~-ts~~~~~-~la~~~-~~~~r~ig~Hf-------~~p~~~ 260 (290)
++.---|+..|-.-. .--.++++|.+++.++=||+-. .|.+.-+ .--..+ ..--.|+|+.- .+.|.
T Consensus 63 ~~Le~PRkI~lMVkAG~-~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS- 140 (473)
T COG0362 63 ASLEKPRKILLMVKAGT-PVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS- 140 (473)
T ss_pred HHhcCCceEEEEEecCC-cHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC-
Confidence 233333444333221 1246778899999999988842 2333222 111222 23357888775 44554
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHc
Q psy17416 261 IPLVEIVPAAWTSERVITRTREIMTEI 287 (290)
Q Consensus 261 ~~lvEvv~~~~t~~e~~~~~~~~~~~l 287 (290)
|+|| .++++.+.+..+++.+
T Consensus 141 -----iMpG--G~~eay~~v~pil~~I 160 (473)
T COG0362 141 -----IMPG--GQKEAYELVAPILTKI 160 (473)
T ss_pred -----cCCC--CCHHHHHHHHHHHHHH
Confidence 4444 4788999999998875
No 186
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.24 E-value=0.07 Score=49.00 Aligned_cols=121 Identities=17% Similarity=0.057 Sum_probs=76.8
Q ss_pred cchhHHHHHHHHH-HcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFA-SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~-~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|+.+|..+. ..|.+|..||+....-. .. . ..+. ..++++.++.||+|+
T Consensus 153 ~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~--~~----------~--------------~~~~-~~~l~ell~~sDvv~ 205 (323)
T PRK15409 153 MGRIGMALAQRAHFGFNMPILYNARRHHKEA--EE----------R--------------FNAR-YCDLDTLLQESDFVC 205 (323)
T ss_pred ccHHHHHHHHHHHhcCCCEEEEECCCCchhh--HH----------h--------------cCcE-ecCHHHHHHhCCEEE
Confidence 6899999999887 77889999987632100 00 0 0112 247888999999999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCC--CcCHHHHhccCCCCCcEEEe--cc--------CCCCCCCCeEEEec
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTS--SFLPSVLSEHSTHRSQFIVA--HP--------VNPPYFIPLVEIVP 268 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts--~~~~~~la~~~~~~~r~ig~--Hf--------~~p~~~~~lvEvv~ 268 (290)
.++|-+.+-+.-+=++....++++++++...- -+.-..+...+... ++.|. =- -+|.+..+.|-++|
T Consensus 206 lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g-~i~gAaLDVf~~EP~~~~~pL~~~~nvilTP 284 (323)
T PRK15409 206 IILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKG-EIHAAGLDVFEQEPLSVDSPLLSLPNVVAVP 284 (323)
T ss_pred EeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC-CeeEEEeecCCCCCCCCCchhhcCCCEEEcC
Confidence 99998887655555677778999999973332 23333555555421 22222 11 12334557777888
Q ss_pred CC
Q psy17416 269 AA 270 (290)
Q Consensus 269 ~~ 270 (290)
+-
T Consensus 285 Hi 286 (323)
T PRK15409 285 HI 286 (323)
T ss_pred cC
Confidence 74
No 187
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.22 E-value=0.042 Score=50.25 Aligned_cols=130 Identities=15% Similarity=0.143 Sum_probs=81.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.+|..+...|.+|..||+.... . . . . ...++++.++.||+|+.
T Consensus 155 ~G~IG~~va~~l~~fg~~V~~~~~~~~~-----~-----------~----~----------~-~~~~l~ell~~sDiv~l 203 (314)
T PRK06932 155 KGCLGTEVGRLAQALGMKVLYAEHKGAS-----V-----------C----R----------E-GYTPFEEVLKQADIVTL 203 (314)
T ss_pred CCHHHHHHHHHHhcCCCEEEEECCCccc-----c-----------c----c----------c-ccCCHHHHHHhCCEEEE
Confidence 6899999999999889999999875320 0 0 0 0 02478889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCC-CCcEEEeccC--------CCCC----CCCeEEE
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTH-RSQFIVAHPV--------NPPY----FIPLVEI 266 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~-~~r~ig~Hf~--------~p~~----~~~lvEv 266 (290)
++|-..+-+.-+=++.-..++++++++...-+ +.-..+.+.+.. +-+-.++=-| +|.+ ..|.|-+
T Consensus 204 ~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvil 283 (314)
T PRK06932 204 HCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLI 283 (314)
T ss_pred cCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEE
Confidence 99988776555556777789999999743322 333355555542 2222233222 1111 2577788
Q ss_pred ecCCC-CCHHHHHHHHH
Q psy17416 267 VPAAW-TSERVITRTRE 282 (290)
Q Consensus 267 v~~~~-t~~e~~~~~~~ 282 (290)
+|+-. .+.+..+++..
T Consensus 284 TPHia~~t~e~~~~~~~ 300 (314)
T PRK06932 284 TPHIAWASDSAVTTLVN 300 (314)
T ss_pred CCccccCcHHHHHHHHH
Confidence 88743 34444444443
No 188
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.12 E-value=0.032 Score=50.67 Aligned_cols=92 Identities=20% Similarity=0.158 Sum_probs=60.1
Q ss_pred cchhHHHHHHHHHHcC--ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G--~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|..|..+|..++..| .++.++|++++.++.-...+++... .. ...++..+++++ ++++||+|
T Consensus 6 aG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~-------------~~-~~~~i~~~~~~~-~l~~aDiV 70 (300)
T cd00300 6 AGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASA-------------FL-ATGTIVRGGDYA-DAADADIV 70 (300)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcc-------------cc-CCCeEEECCCHH-HhCCCCEE
Confidence 5788999999998888 5899999998765543333332210 00 012334345665 68999999
Q ss_pred EEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+..- +..+-+++.+++.+.++...+|.
T Consensus 71 Iitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv 113 (300)
T cd00300 71 VITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILV 113 (300)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 998863 33456667778888885544433
No 189
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.00 E-value=0.016 Score=53.13 Aligned_cols=121 Identities=20% Similarity=0.179 Sum_probs=78.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecC-CHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~-~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|+.+|..+...|.+|..||+ .+...... .......++++.++.||+|+
T Consensus 150 ~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~---------------------------~~~~~~~~Ld~lL~~sDiv~ 202 (324)
T COG0111 150 LGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV---------------------------DGVVGVDSLDELLAEADILT 202 (324)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc---------------------------ccceecccHHHHHhhCCEEE
Confidence 799999999999999999999999 44432110 11122477999999999999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCC-CcC--HHHHhccCCC-CCcEEEeccC--------CCCCCCCeEEEec
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTS-SFL--PSVLSEHSTH-RSQFIVAHPV--------NPPYFIPLVEIVP 268 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts-~~~--~~~la~~~~~-~~r~ig~Hf~--------~p~~~~~lvEvv~ 268 (290)
..+|...+-+.=+=++.-..++++++++ |++ +-. -..+...+.. +-+-.++=.| .|.+..+.|-++|
T Consensus 203 lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TP 281 (324)
T COG0111 203 LHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTP 281 (324)
T ss_pred EcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECC
Confidence 9999888765444466777899999886 444 222 2244444431 1111111111 2445567777888
Q ss_pred CC
Q psy17416 269 AA 270 (290)
Q Consensus 269 ~~ 270 (290)
+-
T Consensus 282 Hi 283 (324)
T COG0111 282 HI 283 (324)
T ss_pred cc
Confidence 64
No 190
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.95 E-value=0.088 Score=47.71 Aligned_cols=161 Identities=10% Similarity=0.022 Sum_probs=105.4
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+......||+. -+.++++.|+++-.++ -|+.--- +++.-..+......-..+=|+|+.|=..+.. ..+
T Consensus 63 i~~~~~~l~~~~-t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~-----~~~ 136 (301)
T PRK14194 63 IRSLEHRLPADT-SQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLSQ-----GRD 136 (301)
T ss_pred CEEEEEECCCCC-CHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhHHhc-----CCC
Confidence 344445566663 3447788888875543 3555433 5677778888887667777999887654321 111
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~ 165 (290)
.--|.|-..+.++++..|- ++ .+-.-+|++ | .+.||..+|.++.+.|++|++|++..
T Consensus 137 ~~~PcTp~aii~lL~~~~i-~l--~Gk~V~vIG-~-s~ivG~PmA~~L~~~gatVtv~~~~t------------------ 193 (301)
T PRK14194 137 VLTPCTPSGCLRLLEDTCG-DL--TGKHAVVIG-R-SNIVGKPMAALLLQAHCSVTVVHSRS------------------ 193 (301)
T ss_pred CCCCCcHHHHHHHHHHhCC-CC--CCCEEEEEC-C-CCccHHHHHHHHHHCCCEEEEECCCC------------------
Confidence 1235556666677776653 22 133344554 2 46999999999999999999997432
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.++.+.+++||+||-|++..-.++..+ ++++++++
T Consensus 194 ---------------------~~l~e~~~~ADIVIsavg~~~~v~~~~-------ik~GaiVI 228 (301)
T PRK14194 194 ---------------------TDAKALCRQADIVVAAVGRPRLIDADW-------LKPGAVVI 228 (301)
T ss_pred ---------------------CCHHHHHhcCCEEEEecCChhcccHhh-------ccCCcEEE
Confidence 245567789999999999665444333 78999887
No 191
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.86 E-value=0.025 Score=51.63 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=59.5
Q ss_pred cchhHHHHHHHHHHcC--ceeEEecCCHHHHHH-HHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAG--YKVSLYDVLSEQIEN-AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G--~~V~l~d~~~e~l~~-a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
.|.+|..+|..++..| .++.++|++++..+. +.. +... . ..... ..+. +++++ ++++||+
T Consensus 8 aG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~d-l~~~--------~--~~~~~----~~i~-~~d~~-~l~~aDi 70 (308)
T cd05292 8 AGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMD-LAHG--------T--PFVKP----VRIY-AGDYA-DCKGADV 70 (308)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHH-HHcc--------c--cccCC----eEEe-eCCHH-HhCCCCE
Confidence 5889999999999988 589999999876542 222 1110 0 00000 1222 45665 5899999
Q ss_pred EEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 199 IQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 199 Vieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
||.+++. +..+-+++.++|.++.+.+.++.
T Consensus 71 Viita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv 114 (308)
T cd05292 71 VVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLV 114 (308)
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 9999986 34456677778888876665554
No 192
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=95.86 E-value=0.072 Score=47.31 Aligned_cols=107 Identities=18% Similarity=0.141 Sum_probs=74.6
Q ss_pred cccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHh---ccCCCC-CcEEEeccCC
Q psy17416 181 GLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS---EHSTHR-SQFIVAHPVN 256 (290)
Q Consensus 181 ~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la---~~~~~~-~r~ig~Hf~~ 256 (290)
.++..++|-.++++++|++|.=+|---. -..+.+++.+.+++|+||+ ||=+++...+. +.+++. -.+..+||-.
T Consensus 125 aGvkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaa 202 (340)
T TIGR01723 125 LGLKVTTDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGC 202 (340)
T ss_pred cCceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCC
Confidence 3556666666689999999998884331 2577888999999999885 66666665443 344433 3677888855
Q ss_pred CCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 257 PPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 257 p~~~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
-|-.-.-+=|+ ....++|.++++.++.++.||+
T Consensus 203 VPgt~~q~Yi~-egyAtEEqI~klveL~~sa~k~ 235 (340)
T TIGR01723 203 VPEMKGQVYIA-EGYASEEAVNKLYELGKKARGK 235 (340)
T ss_pred CCCCCCceEee-cccCCHHHHHHHHHHHHHhCCC
Confidence 44322222334 3577899999999999999984
No 193
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=95.81 E-value=0.14 Score=47.04 Aligned_cols=83 Identities=27% Similarity=0.219 Sum_probs=63.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|..+|..+...|.+|..||+++. .+..+. .+.++.. +++.++.+|+|+.
T Consensus 154 ~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~------------------------~~~~y~~-l~ell~~sDii~l 206 (324)
T COG1052 154 LGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKE------------------------LGARYVD-LDELLAESDIISL 206 (324)
T ss_pred CCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhh------------------------cCceecc-HHHHHHhCCEEEE
Confidence 589999999999988899999999874 111110 0122334 8889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTS 232 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts 232 (290)
.+|-..+-..-+=++..+.++++++|+ ||+
T Consensus 207 ~~Plt~~T~hLin~~~l~~mk~ga~lV-Nta 236 (324)
T COG1052 207 HCPLTPETRHLINAEELAKMKPGAILV-NTA 236 (324)
T ss_pred eCCCChHHhhhcCHHHHHhCCCCeEEE-ECC
Confidence 999998876666678888899999987 444
No 194
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.67 E-value=0.38 Score=42.45 Aligned_cols=97 Identities=14% Similarity=0.072 Sum_probs=68.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|..+.++++|+|+-|++ + +.-.+++.++. ..++.++.|-.+++++.+|........+++-+++..|.....-+-.
T Consensus 53 ~~~~~~~~~aDvVilav~-p-~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~ 128 (258)
T PRK06476 53 KDNQAVVDRSDVVFLAVR-P-QIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTA 128 (258)
T ss_pred CCHHHHHHhCCEEEEEeC-H-HHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeE
Confidence 467777899999999999 3 44477777773 4677788888899999999998865556666666655542222222
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEE
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVT 108 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~ 108 (290)
+.+ + .+.+..++..+|.....
T Consensus 129 ~~~---~---~~~~~~l~~~lG~~~~~ 149 (258)
T PRK06476 129 IYP---P---DPFVAALFDALGTAVEC 149 (258)
T ss_pred ecC---C---HHHHHHHHHhcCCcEEE
Confidence 221 1 25788999999986653
No 195
>PLN02306 hydroxypyruvate reductase
Probab=95.65 E-value=0.15 Score=47.95 Aligned_cols=137 Identities=16% Similarity=0.127 Sum_probs=78.3
Q ss_pred cchhHHHHHHHHH-HcCceeEEecCCHHH-HHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFA-SAGYKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~-~~G~~V~l~d~~~e~-l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|+.+|..+. ..|.+|..||+.+.. ...........+ ... + .. ........++++.++.||+|
T Consensus 173 ~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l---~~~----~---~~--~~~~~~~~~L~ell~~sDiV 240 (386)
T PLN02306 173 AGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFL---KAN----G---EQ--PVTWKRASSMEEVLREADVI 240 (386)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccc---ccc----c---cc--cccccccCCHHHHHhhCCEE
Confidence 6899999999975 679999999987642 111001000000 000 0 00 01122346899999999999
Q ss_pred EEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH--HHHhccCCC-CCcEEEeccC-------CCCCCCCeEEEecC
Q psy17416 200 QESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP--SVLSEHSTH-RSQFIVAHPV-------NPPYFIPLVEIVPA 269 (290)
Q Consensus 200 ieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~la~~~~~-~~r~ig~Hf~-------~p~~~~~lvEvv~~ 269 (290)
+.++|-..+-+.-+=++.-+.++++++++..+-+-.+ ..+...+.. +-...++=-| .|.+..+.|-++|+
T Consensus 241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPH 320 (386)
T PLN02306 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPH 320 (386)
T ss_pred EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCc
Confidence 9999987766555556777789999999733323222 344444432 1111222111 12334567778887
Q ss_pred C
Q psy17416 270 A 270 (290)
Q Consensus 270 ~ 270 (290)
-
T Consensus 321 i 321 (386)
T PLN02306 321 I 321 (386)
T ss_pred c
Confidence 4
No 196
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.63 E-value=0.098 Score=49.49 Aligned_cols=77 Identities=18% Similarity=0.140 Sum_probs=55.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..+++.+...|.+|.++|+++.....+.. .|. . ..+++++++++|+||.
T Consensus 203 ~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~-----------~G~--------------~-v~~leeal~~aDVVIt 256 (406)
T TIGR00936 203 YGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM-----------DGF--------------R-VMTMEEAAKIGDIFIT 256 (406)
T ss_pred CCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh-----------cCC--------------E-eCCHHHHHhcCCEEEE
Confidence 6899999999999999999999999975443332 111 1 1234567889999999
Q ss_pred ccccchHHHHHHHH-HHhhhCCCCcEEEe
Q psy17416 202 SVPEILQIKHQVYR-AIDIFMSSNTILSS 229 (290)
Q Consensus 202 avpe~~~~k~~~~~-~l~~~~~~~~ii~s 229 (290)
++.. +.++. +....++++++++.
T Consensus 257 aTG~-----~~vI~~~~~~~mK~GailiN 280 (406)
T TIGR00936 257 ATGN-----KDVIRGEHFENMKDGAIVAN 280 (406)
T ss_pred CCCC-----HHHHHHHHHhcCCCCcEEEE
Confidence 8762 23443 35668899998874
No 197
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.61 E-value=0.15 Score=48.38 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=56.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..++..+...|.+|+++|+++..++.|.. .|.. ..++++++.++|+||+
T Consensus 210 ~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~~---------------~~~~~e~v~~aDVVI~ 263 (413)
T cd00401 210 YGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGYE---------------VMTMEEAVKEGDIFVT 263 (413)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCCE---------------EccHHHHHcCCCEEEE
Confidence 6899999999999999999999999988776655 2220 1123456789999999
Q ss_pred ccccchHHHHHHH-HHHhhhCCCCcEEEe
Q psy17416 202 SVPEILQIKHQVY-RAIDIFMSSNTILSS 229 (290)
Q Consensus 202 avpe~~~~k~~~~-~~l~~~~~~~~ii~s 229 (290)
|+... .++ +...+.++++++++.
T Consensus 264 atG~~-----~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 264 TTGNK-----DIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred CCCCH-----HHHHHHHHhcCCCCcEEEE
Confidence 97632 233 334557889888863
No 198
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.60 E-value=0.3 Score=44.91 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=77.2
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHH-HHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCee-
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLV- 79 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~-~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lv- 79 (290)
.|++++++.||+|+=++|.... .+++ .++...+++++++ +-.+++++..+....+..-+++-+.+-.|.+..+=.
T Consensus 65 ~s~~eaa~~ADVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~ 141 (330)
T PRK05479 65 LTVAEAAKWADVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREY 141 (330)
T ss_pred CCHHHHHhcCCEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhh
Confidence 3678899999999999996544 6787 7898889999999 888999999887666544567777766666622111
Q ss_pred --------eEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 80 --------EIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 80 --------Eiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
=+..+...+.+..+.+..++..+|-++.
T Consensus 142 ~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~ 177 (330)
T PRK05479 142 EEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRA 177 (330)
T ss_pred hcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCcc
Confidence 1113445567889999999999998875
No 199
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=95.50 E-value=0.038 Score=50.39 Aligned_cols=115 Identities=15% Similarity=0.114 Sum_probs=64.8
Q ss_pred chhHHHHHHHHHHcCc--eeEEecCCH--HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 123 GLIGQAWAMIFASAGY--KVSLYDVLS--EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~--~V~l~d~~~--e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
|..|..++..++..|+ +|.++|+++ +.++.....+.+. +.. .....+++.+++++ .+++||+
T Consensus 10 G~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~---~~~----------~~~~~~i~~~~d~~-~l~~aDi 75 (309)
T cd05294 10 GRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDA---LAA----------AGIDAEIKISSDLS-DVAGSDI 75 (309)
T ss_pred ChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhc---hhc----------cCCCcEEEECCCHH-HhCCCCE
Confidence 7889999999999886 499999954 2222111111110 000 00012455566766 4999999
Q ss_pred EEEcccc------c-h-------HHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCC-CCcEEEe
Q psy17416 199 IQESVPE------I-L-------QIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTH-RSQFIVA 252 (290)
Q Consensus 199 Vieavpe------~-~-------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~-~~r~ig~ 252 (290)
||.++.- + . ..-+++.+.|.+.++ ++++...++...+- .+....+. |.|++|+
T Consensus 76 Viitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 76 VIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence 9999851 1 1 335566667787775 55555444443322 22222333 3567776
No 200
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.50 E-value=0.059 Score=50.45 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhCCccEEEecccee----eEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHc
Q psy17416 92 ITRTREIMTEIGMKPVTLTTEIRG----FALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQK 167 (290)
Q Consensus 92 ~~~~~~~~~~lgk~~v~v~~d~~g----f~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~ 167 (290)
+..+..+.+..+..++.. ...+| -++-=-.|.+|..++..+...|.+|.++|++++.++.+....
T Consensus 142 ~~aa~~~~~~~~g~~~~~-~~~~~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---------- 210 (370)
T TIGR00518 142 QVGAYHLEKTQGGRGVLL-GGVPGVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---------- 210 (370)
T ss_pred HHHHHHhHhhcCCcceee-cCCCCCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc----------
Confidence 344444555555444544 23222 121112589999999999999999999999998765443311
Q ss_pred CCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHH-HHHHHhhhCCCCcEEE
Q psy17416 168 GCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQ-VYRAIDIFMSSNTILS 228 (290)
Q Consensus 168 g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~-~~~~l~~~~~~~~ii~ 228 (290)
+.. .. .......++.+.++++|+||.|++-...-... +-++..+.++++.+|+
T Consensus 211 g~~---v~-----~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 211 GGR---IH-----TRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred Cce---eE-----eccCCHHHHHHHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEE
Confidence 100 00 00001134566788999999997421100001 1233334567887766
No 201
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=95.49 E-value=0.16 Score=48.43 Aligned_cols=139 Identities=16% Similarity=0.199 Sum_probs=86.1
Q ss_pred cchhHHHHHHHHHHcCceeE------EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhccc
Q psy17416 122 HGLIGQAWAMIFASAGYKVS------LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED 195 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~------l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~ 195 (290)
.|.+|..-|..+...|++|+ .+|.+....++|.+ .|+ . ..+++++++.
T Consensus 44 yGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~-----------dGF--------------~-v~~~~Ea~~~ 97 (487)
T PRK05225 44 CGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE-----------NGF--------------K-VGTYEELIPQ 97 (487)
T ss_pred cCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh-----------cCC--------------c-cCCHHHHHHh
Confidence 58888988888888898887 33333334443333 222 2 2467888999
Q ss_pred CcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-----------eE
Q psy17416 196 AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-----------LV 264 (290)
Q Consensus 196 aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-----------lv 264 (290)
||+|+..+|... ...+++++.+.+++++.+.-++. ..+....-..+....++-.-|-.|-+..+ ++
T Consensus 98 ADvVviLlPDt~--q~~v~~~i~p~LK~Ga~L~fsHG-Fni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~ 174 (487)
T PRK05225 98 ADLVINLTPDKQ--HSDVVRAVQPLMKQGAALGYSHG-FNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLI 174 (487)
T ss_pred CCEEEEcCChHH--HHHHHHHHHhhCCCCCEEEecCC-ceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEE
Confidence 999999999883 78888999999999998874333 22322211222223455555543333221 33
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 265 EIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 265 Evv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
-|-+-...+-.+.+.+.++...+|-
T Consensus 175 AV~~~qD~~g~a~~~ala~a~~iG~ 199 (487)
T PRK05225 175 AVHPENDPKGEGMAIAKAWAAATGG 199 (487)
T ss_pred EEeecCCCCchHHHHHHHHHHHhCC
Confidence 3332234455677888888888774
No 202
>PRK08818 prephenate dehydrogenase; Provisional
Probab=95.49 E-value=0.13 Score=48.15 Aligned_cols=106 Identities=13% Similarity=0.079 Sum_probs=71.9
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhh---cCCCcEEeecCCCC--ChHHHhcccCCCCceeeeccCCCCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF---MSSNTILSSSTSSF--LPSVLSEHSTHRSQFIVAHPVNPPYFI 76 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~---~~~~~i~~snts~~--~~~~l~~~~~~~~r~~g~hf~~P~~~~ 76 (290)
+++++.+++||+||=|+|... =.++++++... .+++|++.=-+|.= ++..+ ....-+|+|.|++.=+...
T Consensus 43 ~~~~~~v~~aDlVilavPv~~--~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s 117 (370)
T PRK08818 43 LDPATLLQRADVLIFSAPIRH--TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKS 117 (370)
T ss_pred CCHHHHhcCCCEEEEeCCHHH--HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCC
Confidence 467788999999999998654 45678888765 68999998655543 22322 2223469999998866433
Q ss_pred Ceee---EeeCCCCCHHHHHHHHHHHHHhCCccEEEecc
Q psy17416 77 PLVE---IVPAAWTSERVITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 77 ~lvE---iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d 112 (290)
.+.| ++-.+...++.+..+.++++.+|..++.+..+
T Consensus 118 ~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~~ae 156 (370)
T PRK08818 118 PTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYATPE 156 (370)
T ss_pred cccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEcCHH
Confidence 2211 12223355566788999999999988887443
No 203
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.48 E-value=0.1 Score=49.64 Aligned_cols=79 Identities=18% Similarity=0.102 Sum_probs=56.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..++..+...|.+|+++|+++.....+.. .|. . ..++++++.++|+||.
T Consensus 220 ~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----------~G~--------------~-v~~l~eal~~aDVVI~ 273 (425)
T PRK05476 220 YGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----------DGF--------------R-VMTMEEAAELGDIFVT 273 (425)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----------cCC--------------E-ecCHHHHHhCCCEEEE
Confidence 6899999999999999999999999976544332 111 1 1245667889999999
Q ss_pred ccccchHHHHHHHH-HHhhhCCCCcEEEeCC
Q psy17416 202 SVPEILQIKHQVYR-AIDIFMSSNTILSSST 231 (290)
Q Consensus 202 avpe~~~~k~~~~~-~l~~~~~~~~ii~s~t 231 (290)
|+. + +.++. +....++++++++..+
T Consensus 274 aTG-~----~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 274 ATG-N----KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred CCC-C----HHHHHHHHHhcCCCCCEEEEcC
Confidence 874 2 23443 5666789999887433
No 204
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.46 E-value=0.25 Score=44.46 Aligned_cols=162 Identities=12% Similarity=0.100 Sum_probs=104.1
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-.-..+|+..- .++++.|+++-.+ |-|+.--- .++.-..+.....--..+=|+|++|-..+.. ..+
T Consensus 62 i~~~~~~l~~~~~~-~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~-----~~~ 135 (284)
T PRK14179 62 FKSEVVRLPETISQ-EELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWS-----GRP 135 (284)
T ss_pred CEEEEEECCCCCCH-HHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhC-----CCC
Confidence 44445566776433 4677778777544 35666543 5667777888887666777999988765431 112
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~ 165 (290)
.--|.|-..+.++++..|- ++ .+-.-++++ | .+.||+-+|.+|.+.|+.|++|...
T Consensus 136 ~~~PcTp~avi~lL~~~~i-~l--~Gk~v~vIG-~-S~ivG~Pla~lL~~~gatVtv~~s~------------------- 191 (284)
T PRK14179 136 VMIPCTPAGIMEMFREYNV-EL--EGKHAVVIG-R-SNIVGKPMAQLLLDKNATVTLTHSR------------------- 191 (284)
T ss_pred CCcCCCHHHHHHHHHHhCC-CC--CCCEEEEEC-C-CCcCcHHHHHHHHHCCCEEEEECCC-------------------
Confidence 2235555556666666543 11 122223332 3 5889999999999999999988210
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+.++.+.+++||+||-|++..-.++.. .++++++++-
T Consensus 192 --------------------t~~l~~~~~~ADIVI~avg~~~~v~~~-------~ik~GavVID 228 (284)
T PRK14179 192 --------------------TRNLAEVARKADILVVAIGRGHFVTKE-------FVKEGAVVID 228 (284)
T ss_pred --------------------CCCHHHHHhhCCEEEEecCccccCCHH-------HccCCcEEEE
Confidence 235666789999999999955544333 3789998873
No 205
>PLN02494 adenosylhomocysteinase
Probab=95.44 E-value=0.072 Score=51.12 Aligned_cols=91 Identities=15% Similarity=0.095 Sum_probs=61.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.+|+.+...|.+|+++++++.....+.. .|. . ..+++++++.+|+||.
T Consensus 262 yG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~-----------~G~--------------~-vv~leEal~~ADVVI~ 315 (477)
T PLN02494 262 YGDVGKGCAAAMKAAGARVIVTEIDPICALQALM-----------EGY--------------Q-VLTLEDVVSEADIFVT 315 (477)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh-----------cCC--------------e-eccHHHHHhhCCEEEE
Confidence 6999999999999999999999999876544433 111 1 1245677889999998
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCC---CcCHHHHhcc
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTS---SFLPSVLSEH 242 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts---~~~~~~la~~ 242 (290)
+.... .-+..+.-+.++++++++..+. -+....+.+.
T Consensus 316 tTGt~----~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 316 TTGNK----DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred CCCCc----cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 66522 1233555667999999874333 3334444443
No 206
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.34 E-value=0.049 Score=49.59 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=63.5
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhh-cCCCcEEeecCCCCChHHHhcccCCCCceeeeccC--------CC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF-MSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPV--------NP 72 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~-~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~--------~P 72 (290)
++++++++++|+|+-++|. +.-++++.++... .++++++.+.|..++..... .....+.-+|. .|
T Consensus 39 ~~~~~~~~~advvi~~vp~--~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~----~~s~~~~~~~~~~~v~~i~gp 112 (308)
T PRK14619 39 LSLAAVLADADVIVSAVSM--KGVRPVAEQVQALNLPPETIIVTATKGLDPETTR----TPSQIWQAAFPNHPVVVLSGP 112 (308)
T ss_pred CCHHHHHhcCCEEEEECCh--HHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCc----CHHHHHHHHcCCCceEEEECC
Confidence 4788899999999999997 3677788998764 68889888877655544211 11112222222 22
Q ss_pred CCC------CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccc
Q psy17416 73 PYF------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 113 (290)
Q Consensus 73 ~~~------~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~ 113 (290)
... .+..=++. ..+++..+.+..++...+..+... .|.
T Consensus 113 ~~a~ei~~~~~~~~~~a--g~~~~~~~~v~~ll~~~~~~~~~~-~d~ 156 (308)
T PRK14619 113 NLSKEIQQGLPAATVVA--SRDLAAAETVQQIFSSERFRVYTN-SDP 156 (308)
T ss_pred CcHHHHhcCCCeEEEEE--eCCHHHHHHHHHHhCCCcEEEEec-CCc
Confidence 110 01111111 236788888999999888766654 443
No 207
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=95.33 E-value=0.094 Score=46.54 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=74.2
Q ss_pred cccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhcc---CCCC-CcEEEeccCC
Q psy17416 181 GLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH---STHR-SQFIVAHPVN 256 (290)
Q Consensus 181 ~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~---~~~~-~r~ig~Hf~~ 256 (290)
.++..++|-.++++++|++|.=+|---. -..+.+++.+.+++|+||+ ||=+++...+... +++. -.+..+||-.
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 4556666666689999999998884321 2577889999999999885 6666666655543 3333 3677888865
Q ss_pred CCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 257 PPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 257 p~~~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
-|-.-.-+ .+.....++|.++++.++.++.||+
T Consensus 205 VPgt~Gq~-~i~egyAtEEqI~klveL~~sa~k~ 237 (342)
T PRK00961 205 VPEMKGQV-YIAEGYADEEAVEKLYEIGKKARGN 237 (342)
T ss_pred CCCCCCce-ecccccCCHHHHHHHHHHHHHhCCC
Confidence 44221111 1234577999999999999999984
No 208
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.30 E-value=0.16 Score=45.56 Aligned_cols=104 Identities=13% Similarity=-0.012 Sum_probs=78.6
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCe-ee
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPL-VE 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~l-vE 80 (290)
+|.++.++++|+||-|++ ...=.++++++....++++++.|-..++++.+|...++. .+++-+=+.-|...-.- .=
T Consensus 56 ~~~~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~ 132 (277)
T PRK06928 56 DNEAEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSL 132 (277)
T ss_pred CCHHHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEE
Confidence 567778899999999998 333447888888888889999999999999999998753 36665555555443322 23
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+..++..+++-.+.+..++..+|+ ++.+
T Consensus 133 ~~~~~~~~~~~~~~v~~l~~~~G~-~~~v 160 (277)
T PRK06928 133 VAHAETVNEANKSRLEETLSHFSH-VMTI 160 (277)
T ss_pred EecCCCCCHHHHHHHHHHHHhCCC-EEEE
Confidence 345667788999999999999998 5566
No 209
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.21 E-value=0.17 Score=46.07 Aligned_cols=117 Identities=17% Similarity=0.112 Sum_probs=73.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|.-++..+.+.|.+|.++.+++. +++..+ .|..-..... .......+.+..+.+..+|+||.
T Consensus 8 aGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~-----------~GL~i~~~~~--~~~~~~~~~~~~~~~~~~Dlviv 73 (307)
T COG1893 8 AGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKK-----------KGLRIEDEGG--NFTTPVVAATDAEALGPADLVIV 73 (307)
T ss_pred CcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHh-----------CCeEEecCCC--ccccccccccChhhcCCCCEEEE
Confidence 689999999999999988888888775 554444 2332211111 11111222333345779999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHH-HhccCCCCCcEEEecc
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV-LSEHSTHRSQFIVAHP 254 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~-la~~~~~~~r~ig~Hf 254 (290)
++-.-. -.+.++.+.+.++++++|.+.--++...+ +....+....+.|+=+
T Consensus 74 ~vKa~q--~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~ 125 (307)
T COG1893 74 TVKAYQ--LEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTT 125 (307)
T ss_pred Eecccc--HHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEee
Confidence 987544 56888999999999998876555555555 4444333322444443
No 210
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.16 E-value=0.23 Score=44.65 Aligned_cols=162 Identities=16% Similarity=0.180 Sum_probs=105.6
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-.-..+|+.. +.++++.|+++-.+ |-|+.--- .++...++.....--..+=|+|++|-..+.. ...
T Consensus 62 i~~~~~~l~~~~~-~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~-----~~~ 135 (285)
T PRK14189 62 FHSLKDRYPADLS-EAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGALMT-----GQP 135 (285)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhhHhhC-----CCC
Confidence 3444445566543 44778888887554 34666544 5677778888887667777999998776432 111
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~ 165 (290)
.--|.|-..+.++++..|- .+ ....-.+++| .+..|+-++.++.+.|..|++...
T Consensus 136 ~~~PcTp~aii~lL~~~~i---~l-~Gk~vvViGr-s~iVGkPla~lL~~~~atVt~~hs-------------------- 190 (285)
T PRK14189 136 LFRPCTPYGVMKMLESIGI---PL-RGAHAVVIGR-SNIVGKPMAMLLLQAGATVTICHS-------------------- 190 (285)
T ss_pred CCcCCCHHHHHHHHHHcCC---CC-CCCEEEEECC-CCccHHHHHHHHHHCCCEEEEecC--------------------
Confidence 1235556666677776652 11 1222234444 466799999999999999987431
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
-+.++.+.+++||+||-|++ +..++.. ..++++++++.
T Consensus 191 -------------------~t~~l~~~~~~ADIVV~avG-----~~~~i~~--~~ik~gavVID 228 (285)
T PRK14189 191 -------------------KTRDLAAHTRQADIVVAAVG-----KRNVLTA--DMVKPGATVID 228 (285)
T ss_pred -------------------CCCCHHHHhhhCCEEEEcCC-----CcCccCH--HHcCCCCEEEE
Confidence 13466667899999999999 4445553 67889998873
No 211
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.15 E-value=0.041 Score=51.85 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=36.0
Q ss_pred CcHHhhcccCcEEEEcccCChHHH---------HHHHHHHHhhcCCCcEEeecCCCCChH
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIK---------HQVYRAIDIFMSSNTILSSSTSSFLPS 52 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K---------~~~~~~~~~~~~~~~i~~snts~~~~~ 52 (290)
+|.++++++||+||+|||++++.| .++.+.+.+ .+++.++ ...||+|++
T Consensus 65 ~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lV-V~~STv~pg 122 (388)
T PRK15057 65 LDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVM-VIKSTVPVG 122 (388)
T ss_pred cchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEE-EEeeecCCc
Confidence 457788899999999999998777 355567766 4666655 455666665
No 212
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.10 E-value=0.1 Score=47.31 Aligned_cols=105 Identities=10% Similarity=0.127 Sum_probs=66.2
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHH--HHHhhcCCCcEEeecCCCCChH---HHhcccC-CCCceeeeccCCCCC-
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFLPS---VLSEHST-HRSQFIVAHPVNPPY- 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~--~~~~~~~~~~i~~snts~~~~~---~l~~~~~-~~~r~~g~hf~~P~~- 74 (290)
+++.+++++||+||.|+|.+..++.-++. .+-+.+++++++ .|+|+.++. ++++.+. +.-+++-..-..-+.
T Consensus 49 ~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lv-id~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~ 127 (296)
T PRK15461 49 ASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALV-IDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDN 127 (296)
T ss_pred CCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEE-EECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHH
Confidence 56788899999999999999888865543 344456777776 566666665 5555443 222232221111111
Q ss_pred CC-CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 75 FI-PLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 75 ~~-~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
.. .-.=++.| .+++.++++..+++.+|+..+.+
T Consensus 128 a~~g~l~~~~g--g~~~~~~~~~p~l~~~g~~~~~~ 161 (296)
T PRK15461 128 AITGTLLLLAG--GTAEQVERATPILMAMGNELINA 161 (296)
T ss_pred HHhCcEEEEEC--CCHHHHHHHHHHHHHHcCCeEee
Confidence 00 11113333 37889999999999999977766
No 213
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.08 E-value=0.087 Score=48.22 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=56.5
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|..|..+|..+...|. ++.++|++.+.+..-...+++... .. ....+. +++++ ++++||+|
T Consensus 14 aG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~-----------~~---~~~~i~-~~~~~-~~~~adiv 77 (315)
T PRK00066 14 DGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVP-----------FT---SPTKIY-AGDYS-DCKDADLV 77 (315)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcc-----------cc---CCeEEE-eCCHH-HhCCCCEE
Confidence 58999999999988887 799999988765433332332210 00 001233 35565 58999999
Q ss_pred EEcccc--------------chHHHHHHHHHHhhhCCCCcEE
Q psy17416 200 QESVPE--------------ILQIKHQVYRAIDIFMSSNTIL 227 (290)
Q Consensus 200 ieavpe--------------~~~~k~~~~~~l~~~~~~~~ii 227 (290)
|.+.-. |..+-+++..++.++.+...++
T Consensus 78 Iitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vi 119 (315)
T PRK00066 78 VITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFL 119 (315)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 986543 3334566666777776554443
No 214
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.07 E-value=0.04 Score=47.05 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=36.6
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEee
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 44 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~s 44 (290)
++.+.++++|+|||| .|+.+.|+.++.++.+..+..+++++
T Consensus 103 ~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 103 NIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred HHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 456678999999999 79999999999999999998888874
No 215
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.02 E-value=0.077 Score=48.51 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=59.5
Q ss_pred eeeEEecccchhHHHHHHHHH--HcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFA--SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~--~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-++++ .|.+|+.++..+. ..+.+|.+|+++++..++..+.+++ .|. .+....++++
T Consensus 128 v~iiG---~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~------------~~~~~~~~~~ 185 (314)
T PRK06141 128 LLVVG---TGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF------------DAEVVTDLEA 185 (314)
T ss_pred EEEEC---CcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC------------ceEEeCCHHH
Confidence 35565 6889998876444 3457899999999887665553321 110 1233567788
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 232 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts 232 (290)
++.+||+|+-|.+... .++.. +.+++++.|...++
T Consensus 186 av~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig~ 220 (314)
T PRK06141 186 AVRQADIISCATLSTE----PLVRG--EWLKPGTHLDLVGN 220 (314)
T ss_pred HHhcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeCC
Confidence 8999999999998663 33321 45788886654333
No 216
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.01 E-value=0.086 Score=48.19 Aligned_cols=92 Identities=15% Similarity=0.213 Sum_probs=57.4
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..+|..+...|. ++.++|.+++.++.-...+.... ... ....+..+.++++ +++||+|
T Consensus 11 aG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~------~~~--------~~~~v~~~~dy~~-~~~adiv 75 (312)
T cd05293 11 VGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS------AFL--------KNPKIEADKDYSV-TANSKVV 75 (312)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh------ccC--------CCCEEEECCCHHH-hCCCCEE
Confidence 68999999999888876 78999998865433222222210 000 0125555678885 8999999
Q ss_pred EEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+.-. |..+-+++.+++.++.+.+.+|.
T Consensus 76 vitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~viv 118 (312)
T cd05293 76 IVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLV 118 (312)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 985432 12234556667888865555444
No 217
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.83 E-value=0.094 Score=49.92 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=61.7
Q ss_pred CceeEEecCC-HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccc---------
Q psy17416 137 GYKVSLYDVL-SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEI--------- 206 (290)
Q Consensus 137 G~~V~l~d~~-~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~--------- 206 (290)
+-++.++|++ ++.++......++..++. + ..-.+..|+|..+++.+||+||.++-..
T Consensus 29 ~~ei~L~Did~~~rl~~v~~~~~~~~~~~-------~------~~~~v~~t~d~~~al~gadfVi~~~~vg~~~~r~~de 95 (419)
T cd05296 29 VTELVLVDIDEEEKLEIVGALAKRMVKKA-------G------LPIKVHLTTDRREALEGADFVFTQIRVGGLEARALDE 95 (419)
T ss_pred CCEEEEecCChHHHHHHHHHHHHHHHHhh-------C------CCeEEEEeCCHHHHhCCCCEEEEEEeeCCcchhhhhh
Confidence 4689999999 888766444444443321 0 0124667899999999999999664211
Q ss_pred -----h--------------------HHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHHhccCCCCCcEEEec
Q psy17416 207 -----L--------------------QIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHSTHRSQFIVAH 253 (290)
Q Consensus 207 -----~--------------------~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~la~~~~~~~r~ig~H 253 (290)
. .+-+++.+++.+.++ ++++. ||-..+-...+.... +.|++|+-
T Consensus 96 ~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~P-da~lin~TNP~~ivt~a~~k~~--~~rviGlc 166 (419)
T cd05296 96 RIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAP-DAWLINFTNPAGIVTEAVLRHT--GDRVIGLC 166 (419)
T ss_pred hhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCC-CeEEEEecCHHHHHHHHHHHhc--cCCEEeeC
Confidence 1 345577778888875 45444 454443333332222 56677764
No 218
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.78 E-value=0.27 Score=44.01 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=83.0
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee-
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE- 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE- 80 (290)
+|.++.+++||+||=|++ + ..=.++++++.....+++++.|=-.++++.+|...+..+.+++-+=+.-|...-.-+=
T Consensus 55 ~~~~e~~~~aDiIiLavk-P-~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~ 132 (272)
T PRK12491 55 TNNNEVANSADILILSIK-P-DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSA 132 (272)
T ss_pred CCcHHHHhhCCEEEEEeC-h-HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEE
Confidence 466777899999999999 3 5566778888888889999999999999999999987556777666666654433333
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+..+...+++-.+.+.+++..+|+. +.+
T Consensus 133 ~~~~~~~~~~~~~~v~~lf~~~G~~-~~~ 160 (272)
T PRK12491 133 LCFNEMVTEKDIKEVLNIFNIFGQT-EVV 160 (272)
T ss_pred EEeCCCCCHHHHHHHHHHHHcCCCE-EEE
Confidence 3466777888899999999999984 666
No 219
>PRK07680 late competence protein ComER; Validated
Probab=94.76 E-value=0.23 Score=44.24 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=73.1
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCC-CCeee
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-IPLVE 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~-~~lvE 80 (290)
+|.++.+.++|+|+-|++ ...=.++++++....+++.++.|-++.+++..|....+ .+++-+++.-|... .-..=
T Consensus 54 ~~~~~~~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~ 129 (273)
T PRK07680 54 KTIEEVISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASL 129 (273)
T ss_pred CCHHHHHHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEE
Confidence 466777899999999996 33335677888777888889999999999999998774 23333333222111 11112
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEecc
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d 112 (290)
+..+...+++..+.+.+++..+|. ++.+..+
T Consensus 130 ~~~g~~~~~~~~~~~~~ll~~~G~-~~~i~e~ 160 (273)
T PRK07680 130 FTFGSRCSEEDQQKLERLFSNIST-PLVIEED 160 (273)
T ss_pred EeeCCCCCHHHHHHHHHHHHcCCC-EEEEChH
Confidence 234666678888999999999995 7777433
No 220
>PLN00106 malate dehydrogenase
Probab=94.68 E-value=0.074 Score=48.83 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=63.8
Q ss_pred chhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 123 GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
|..|..++..+...|+ ++.++|+++ ....+++ +.+ .. .......+..++++.+++++||+||
T Consensus 28 G~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~D-l~~------------~~--~~~~i~~~~~~~d~~~~l~~aDiVV 91 (323)
T PLN00106 28 GGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAAD-VSH------------IN--TPAQVRGFLGDDQLGDALKGADLVI 91 (323)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEch-hhh------------CC--cCceEEEEeCCCCHHHHcCCCCEEE
Confidence 8899999999987665 899999977 1111111 000 00 0000111123455667899999999
Q ss_pred Ecc--------------ccchHHHHHHHHHHhhhCCCCcEEEeCCCCc----CHHH-HhccCC-CCCcEEEec
Q psy17416 201 ESV--------------PEILQIKHQVYRAIDIFMSSNTILSSSTSSF----LPSV-LSEHST-HRSQFIVAH 253 (290)
Q Consensus 201 eav--------------pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~----~~~~-la~~~~-~~~r~ig~H 253 (290)
.+. +.|..+-+++++++.++.++..+++++.-.- .++. +..... .|.+++|+-
T Consensus 92 itAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~ 164 (323)
T PLN00106 92 IPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT 164 (323)
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEe
Confidence 654 3344566677777888775554444222221 2332 223332 356777765
No 221
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.63 E-value=0.21 Score=45.40 Aligned_cols=108 Identities=12% Similarity=0.084 Sum_probs=66.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|.-+|..+.+.|++|+++++..+.++...+ +.|..-.. ......-.... .+.+ .....|+||.
T Consensus 10 aGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~----------~~Gl~i~~-~g~~~~~~~~~-~~~~-~~~~~D~viv 76 (305)
T PRK05708 10 AGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ----------AGGLTLVE-QGQASLYAIPA-ETAD-AAEPIHRLLL 76 (305)
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh----------cCCeEEee-CCcceeeccCC-CCcc-cccccCEEEE
Confidence 6899999999999999999999998876654433 11211000 00000001111 1112 2457899999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH-HHhccCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-VLSEHST 244 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~-~la~~~~ 244 (290)
|+=..- -.+.++.+.+.+.+++++.+---++... .++..+.
T Consensus 77 ~vK~~~--~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~ 118 (305)
T PRK05708 77 ACKAYD--AEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP 118 (305)
T ss_pred ECCHHh--HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC
Confidence 986443 3467788999999999887655555544 4544443
No 222
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=94.60 E-value=0.14 Score=46.60 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=55.0
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..+|..++..|+ ++.++|++.+.+..-...+.+... .. . ....++ ..+++ ++++||+|
T Consensus 4 aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~------~~-~------~~~~i~-~~~~~-~~~daDiv 68 (299)
T TIGR01771 4 AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAAS------FL-P------TPKKIR-SGDYS-DCKDADLV 68 (299)
T ss_pred cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhc------cc-C------CCeEEe-cCCHH-HHCCCCEE
Confidence 58889999999888776 799999987654332222222110 00 0 001233 34555 68999999
Q ss_pred EEcccc--------------chHHHHHHHHHHhhhCCCCcEE
Q psy17416 200 QESVPE--------------ILQIKHQVYRAIDIFMSSNTIL 227 (290)
Q Consensus 200 ieavpe--------------~~~~k~~~~~~l~~~~~~~~ii 227 (290)
|.+.-. |..+-+++..++.+..+...+|
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vi 110 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFL 110 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 986653 3345566667788775444433
No 223
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.56 E-value=0.13 Score=49.14 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=38.8
Q ss_pred cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcc
Q psy17416 136 AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV 203 (290)
Q Consensus 136 ~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieav 203 (290)
.+-++.++|.++++++...+..++..++. + ..-++..|+|..+|+.+||+||.++
T Consensus 28 ~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-------g------~~~~v~~ttD~~~Al~gADfVi~~i 82 (425)
T cd05197 28 PISEVTLYDIDEERLDIILTIAKRYVEEV-------G------ADIKFEKTMDLEDAIIDADFVINQF 82 (425)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHHHhh-------C------CCeEEEEeCCHHHHhCCCCEEEEee
Confidence 35689999999999877444444433321 1 0125677999999999999999654
No 224
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=94.53 E-value=0.18 Score=46.33 Aligned_cols=90 Identities=14% Similarity=0.060 Sum_probs=59.0
Q ss_pred eeeEEecccchhHHHHHHHHH--HcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFA--SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~--~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|+++ .|.+++..+..+. ....+|.+||++++..+...+++++ .|. .+....+.++
T Consensus 131 lgiiG---~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g~------------~v~~~~~~~e 188 (325)
T TIGR02371 131 LGIIG---AGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YEV------------PVRAATDPRE 188 (325)
T ss_pred EEEEC---CCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hCC------------cEEEeCCHHH
Confidence 46776 6777776443333 3456899999999987765554331 110 1234678888
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 231 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 231 (290)
++++||+|+.|+|..- .++. .+.+++++.|..-.
T Consensus 189 av~~aDiVitaT~s~~----P~~~--~~~l~~g~~v~~vG 222 (325)
T TIGR02371 189 AVEGCDILVTTTPSRK----PVVK--ADWVSEGTHINAIG 222 (325)
T ss_pred HhccCCEEEEecCCCC----cEec--HHHcCCCCEEEecC
Confidence 9999999999998754 3332 23568998776433
No 225
>KOG2380|consensus
Probab=94.48 E-value=1.5 Score=40.40 Aligned_cols=139 Identities=15% Similarity=0.149 Sum_probs=90.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh-hcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE-CLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~-~l~~aDlVi 200 (290)
+|.||.-.|..+.++|+.|...||++. +.+.+++... ..+++.+ +-+..|+|+
T Consensus 60 fGnmGqflAetli~aGh~li~hsRsdy--ssaa~~yg~~------------------------~ft~lhdlcerhpDvvL 113 (480)
T KOG2380|consen 60 FGNMGQFLAETLIDAGHGLICHSRSDY--SSAAEKYGSA------------------------KFTLLHDLCERHPDVVL 113 (480)
T ss_pred cCcHHHHHHHHHHhcCceeEecCcchh--HHHHHHhccc------------------------ccccHHHHHhcCCCEEE
Confidence 799999999999999999999999873 3333322211 1122222 336789999
Q ss_pred EccccchHHHHHHHHHHhhh-CCCCcEEEeCCC--CcCHHHHhccCCCCCcEEEeccCCCCC-C------CCeEEEe-c-
Q psy17416 201 ESVPEILQIKHQVYRAIDIF-MSSNTILSSSTS--SFLPSVLSEHSTHRSQFIVAHPVNPPY-F------IPLVEIV-P- 268 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~-~~~~~ii~s~ts--~~~~~~la~~~~~~~r~ig~Hf~~p~~-~------~~lvEvv-~- 268 (290)
.|+. ..-...+++..-.. ++.++++..-+| -...+.+.+-++..-.++-.|++..|. . .|+|-+- +
T Consensus 114 lcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRi 191 (480)
T KOG2380|consen 114 LCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRI 191 (480)
T ss_pred EEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeec
Confidence 9987 44455677766655 778999985444 444555555665556889999976664 1 1454431 1
Q ss_pred -CCCCCHHHHHHHHHHHHHcC
Q psy17416 269 -AAWTSERVITRTREIMTEIG 288 (290)
Q Consensus 269 -~~~t~~e~~~~~~~~~~~lg 288 (290)
-...-+|-.+.+.+.+...|
T Consensus 192 g~~~~r~ercE~fleIf~ceg 212 (480)
T KOG2380|consen 192 GYAASRPERCEFFLEIFACEG 212 (480)
T ss_pred cccccchHHHHHHHHHHHhcC
Confidence 12334777787777777665
No 226
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=94.28 E-value=0.21 Score=47.79 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=62.4
Q ss_pred CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccc----------
Q psy17416 137 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEI---------- 206 (290)
Q Consensus 137 G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~---------- 206 (290)
+-++.++|.++++++......++..++ .| ..-++..|+|..+|+.+||+||-++-.-
T Consensus 29 ~~ei~L~DId~~rl~~v~~l~~~~~~~---~g----------~~~~v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~ 95 (437)
T cd05298 29 LRELVLYDIDAERQEKVAEAVKILFKE---NY----------PEIKFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEK 95 (437)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHh---hC----------CCeEEEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHh
Confidence 468999999999987744444433322 11 1135677999999999999999654322
Q ss_pred ------------------------hHHHHHHHHHHhhhCCCCcEEE-eCCCCcCHHHHhccCCCCCcEEEec
Q psy17416 207 ------------------------LQIKHQVYRAIDIFMSSNTILS-SSTSSFLPSVLSEHSTHRSQFIVAH 253 (290)
Q Consensus 207 ------------------------~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~~la~~~~~~~r~ig~H 253 (290)
..+-.++.+++.+.+++.-+|- ||-...-...+... ....|++|+.
T Consensus 96 Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~-~~~~kviGlC 166 (437)
T cd05298 96 IPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRL-FPNARILNIC 166 (437)
T ss_pred HHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHH-CCCCCEEEEC
Confidence 1244567778888874444333 44443333233222 2235788765
No 227
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.20 E-value=0.93 Score=40.82 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=101.4
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+......+|+. -+.++++.|+++-.+ |-|+.--- .++.-.++......-..+=|+|++|-..+.. ..+
T Consensus 63 i~~~~~~l~~~~-s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~-----~~~ 136 (285)
T PRK10792 63 FVSRSYDLPETT-SEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVGRLAQ-----RIP 136 (285)
T ss_pred CEEEEEECCCCC-CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCccChhhHhHHhC-----CCC
Confidence 344444555553 334788888877544 34665444 5677778888887667777999888665321 111
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~ 165 (290)
.--|.|-..+.++++..+. + + ....-.+++| ....|+-++++|.+.|..|++....
T Consensus 137 ~~~PcTp~av~~ll~~~~i-~--l-~Gk~vvViGr-s~iVG~Pla~lL~~~~atVtv~hs~------------------- 192 (285)
T PRK10792 137 LLRPCTPRGIMTLLERYGI-D--T-YGLNAVVVGA-SNIVGRPMSLELLLAGCTVTVCHRF------------------- 192 (285)
T ss_pred CCCCCCHHHHHHHHHHcCC-C--C-CCCEEEEECC-CcccHHHHHHHHHHCCCeEEEEECC-------------------
Confidence 1234455556666666542 1 1 1223334555 5668999999999999999887532
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.+++||+||-|+. |..++. .+.++++++++
T Consensus 193 --------------------T~~l~~~~~~ADIvi~avG-----~p~~v~--~~~vk~gavVI 228 (285)
T PRK10792 193 --------------------TKNLRHHVRNADLLVVAVG-----KPGFIP--GEWIKPGAIVI 228 (285)
T ss_pred --------------------CCCHHHHHhhCCEEEEcCC-----Cccccc--HHHcCCCcEEE
Confidence 2456667889999999994 222332 25688999887
No 228
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.16 E-value=0.34 Score=46.66 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=58.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.+|..+...|.+|.++++++.....+.. .|. . ..+++++++.+|+|+.
T Consensus 262 ~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-----------~G~--------------~-~~~leell~~ADIVI~ 315 (476)
T PTZ00075 262 YGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-----------EGY--------------Q-VVTLEDVVETADIFVT 315 (476)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-----------cCc--------------e-eccHHHHHhcCCEEEE
Confidence 6899999999999999999999998875433322 111 1 2356778899999999
Q ss_pred ccccchHHHHHHH-HHHhhhCCCCcEEEeCCCCcC
Q psy17416 202 SVPEILQIKHQVY-RAIDIFMSSNTILSSSTSSFL 235 (290)
Q Consensus 202 avpe~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~ 235 (290)
++. .+.++ ++.-+.++++++++ |++...
T Consensus 316 atG-----t~~iI~~e~~~~MKpGAiLI-NvGr~d 344 (476)
T PTZ00075 316 ATG-----NKDIITLEHMRRMKNNAIVG-NIGHFD 344 (476)
T ss_pred CCC-----cccccCHHHHhccCCCcEEE-EcCCCc
Confidence 864 23444 35566789999886 444444
No 229
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=94.13 E-value=0.66 Score=42.70 Aligned_cols=89 Identities=11% Similarity=0.115 Sum_probs=57.4
Q ss_pred eeeEEecccchhHHHHHHHHH--HcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFA--SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~--~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|.|++ |...+.-.+.+. ...-++.+|+++++..++...+.++.+. ..+....+.++
T Consensus 133 laiIGa---G~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~------------------~~v~a~~s~~~ 191 (330)
T COG2423 133 LAIIGA---GAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGG------------------EAVGAADSAEE 191 (330)
T ss_pred EEEECC---cHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcC------------------ccceeccCHHH
Confidence 355664 444443333332 2234899999999998877765544321 12345688899
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
++.+||+|+-|+|..- .+++ .+.+++++.|..
T Consensus 192 av~~aDiIvt~T~s~~----Pil~--~~~l~~G~hI~a 223 (330)
T COG2423 192 AVEGADIVVTATPSTE----PVLK--AEWLKPGTHINA 223 (330)
T ss_pred HhhcCCEEEEecCCCC----Ceec--HhhcCCCcEEEe
Confidence 9999999999999766 3332 345678887754
No 230
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=94.09 E-value=0.27 Score=43.77 Aligned_cols=112 Identities=10% Similarity=0.102 Sum_probs=76.1
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccC-CCCceeeeccCCCCC--CCCe
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST-HRSQFIVAHPVNPPY--FIPL 78 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~-~~~r~~g~hf~~P~~--~~~l 78 (290)
+|=.||++++|++|==.|.-- .--.+.+++-...++++|++ ||=++|...|...+. -..+=+|+--|+|+- -|+=
T Consensus 133 sDD~EAvk~aei~I~ftPfG~-~t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVPgt~G 210 (342)
T PRK00961 133 TDDREAVADADIVITWLPKGG-MQPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVPEMKG 210 (342)
T ss_pred cCcHHHhcCCCEEEEecCCCC-CchHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCCCCCCCC
Confidence 444569999999996665432 22567888888999999986 555777776655442 123446666666653 2442
Q ss_pred eeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee
Q psy17416 79 VEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 115 (290)
Q Consensus 79 vEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g 115 (290)
--.+.-...+++.++...++++..||.+..+..+.-+
T Consensus 211 q~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvs 247 (342)
T PRK00961 211 QVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIG 247 (342)
T ss_pred ceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcc
Confidence 2223345668999999999999999999988655433
No 231
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=94.06 E-value=0.6 Score=41.36 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=75.9
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCC-Ceee
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFI-PLVE 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~-~lvE 80 (290)
+|..+.+.++|+||=|++ ...=.+++.++....+++ ++.|-..+++++.+....+...+++.+-+..|...- ...=
T Consensus 49 ~~~~~~~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~ 125 (260)
T PTZ00431 49 QSNEELAKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLV 125 (260)
T ss_pred CChHHHHHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEE
Confidence 355667889999999975 444567788887766654 568888999999999887654445555555555433 3344
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+..+..++++..+.+.+++..+|+ ++.+
T Consensus 126 i~~~~~~~~~~~~~v~~l~~~~G~-~~~v 153 (260)
T PTZ00431 126 FCANNNVDSTDKKKVIDIFSACGI-IQEI 153 (260)
T ss_pred EEeCCCCCHHHHHHHHHHHHhCCc-EEEE
Confidence 556667788889999999999998 5556
No 232
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.04 E-value=0.57 Score=42.98 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=67.5
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH-HHhcccCCCCceeeeccC-----CCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-VLSEHSTHRSQFIVAHPV-----NPPYF 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~-~l~~~~~~~~r~~g~hf~-----~P~~~ 75 (290)
+++ ++++++|+||.|++-. .+.++++++....++++++.+.+.++... .+...+.....+.|.+++ .|...
T Consensus 66 ~~~-~~~~~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~ 142 (341)
T PRK08229 66 TDP-AALATADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAF 142 (341)
T ss_pred cCh-hhccCCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceE
Confidence 344 4688999999999754 45789999999999999998888887754 566666543334454542 22211
Q ss_pred C--CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee
Q psy17416 76 I--PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 115 (290)
Q Consensus 76 ~--~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g 115 (290)
. ..-++.-+. .+.++...+++...|...... .|..+
T Consensus 143 ~~~~~g~l~~~~---~~~~~~~~~~l~~~g~~~~~~-~di~~ 180 (341)
T PRK08229 143 HQGTSGALAIEA---SPALRPFAAAFARAGLPLVTH-EDMRA 180 (341)
T ss_pred EecCCCceEecC---CchHHHHHHHHHhcCCCceec-chhHH
Confidence 0 011122221 244677888888888766654 56443
No 233
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.95 E-value=0.82 Score=38.91 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHHHh-CCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 84 AAWTSERVITRTREIMTEI-GMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 84 ~~~t~~~~~~~~~~~~~~l-gk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
++.|.--++..+.+.++.+ +...+ ++-.-++++ +|.+|..++..+.+.|++|+++|++++.++...+
T Consensus 2 s~aTg~Gv~~~~~~~~~~~~~~~~l--~gk~v~I~G---~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHLLGTDSL--EGKTVAVQG---LGKVGYKLAEHLLEEGAKLIVADINEEAVARAAE 69 (200)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCC--CCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 4556677777777777775 32222 122223333 6899999999999999999999999876655443
No 234
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.86 E-value=0.17 Score=45.94 Aligned_cols=106 Identities=25% Similarity=0.302 Sum_probs=67.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH-------HHhcccCCCCceeeeccCCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-------VLSEHSTHRSQFIVAHPVNPPY 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~-------~l~~~~~~~~r~~g~hf~~P~~ 74 (290)
+|++++++++|+||-|++. ....+++.++.+.+.+++++.+.+++++.. .+.+......+. .-+..|..
T Consensus 63 ~~~~~~~~~~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~ 138 (325)
T PRK00094 63 TDLAEALADADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSF 138 (325)
T ss_pred CCHHHHHhCCCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccH
Confidence 4677788999999999998 467888899999999999887766555542 222222210011 11222332
Q ss_pred C-------CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee
Q psy17416 75 F-------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 115 (290)
Q Consensus 75 ~-------~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g 115 (290)
. ..++.+. ..+++.++.+..++...|..+... .|..|
T Consensus 139 ~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~-~d~~g 182 (325)
T PRK00094 139 AKEVARGLPTAVVIA---STDEELAERVQELFHSPYFRVYTN-TDVIG 182 (325)
T ss_pred HHHHHcCCCcEEEEE---eCCHHHHHHHHHHhCCCCEEEEec-CCcch
Confidence 1 1223322 236888999999999988766554 45544
No 235
>PLN02602 lactate dehydrogenase
Probab=93.79 E-value=0.19 Score=46.71 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=56.3
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|..|..+|..+...|. ++.++|++++.++.-...+.+... .. + . ..+..+.++++ +++||+|
T Consensus 45 aG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~------~~-~------~-~~i~~~~dy~~-~~daDiV 109 (350)
T PLN02602 45 VGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA------FL-P------R-TKILASTDYAV-TAGSDLC 109 (350)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh------cC-C------C-CEEEeCCCHHH-hCCCCEE
Confidence 68999999999888776 799999987654332222222110 00 0 0 23444457775 8999999
Q ss_pred EEcccc-------c-------hHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPE-------I-------LQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe-------~-------~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+.-. . ..+-+++.+++.+.++...+|.
T Consensus 110 VitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~iviv 152 (350)
T PLN02602 110 IVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLI 152 (350)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 987432 1 1234455667887766655443
No 236
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=93.77 E-value=0.1 Score=43.89 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=37.9
Q ss_pred CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcc
Q psy17416 137 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV 203 (290)
Q Consensus 137 G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieav 203 (290)
+.++.++|++++.++......++..++. | ..-++..++|..+++++||+||-++
T Consensus 28 ~~ei~L~Did~~RL~~~~~~~~~~~~~~---~----------~~~~v~~ttd~~eAl~gADfVi~~i 81 (183)
T PF02056_consen 28 GSEIVLMDIDEERLEIVERLARRMVEEA---G----------ADLKVEATTDRREALEGADFVINQI 81 (183)
T ss_dssp EEEEEEE-SCHHHHHHHHHHHHHHHHHC---T----------TSSEEEEESSHHHHHTTESEEEE--
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHHhc---C----------CCeEEEEeCCHHHHhCCCCEEEEEe
Confidence 4589999999999987766666554421 1 1135667899999999999999654
No 237
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=93.76 E-value=0.44 Score=42.62 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=50.3
Q ss_pred eeEEecccchhHHHHHHHHHH--cCceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQAWAMIFAS--AGYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~--~G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
|+++ .|.||...+..+.. .++++. ++|++++..++..+. .|. ....+++++
T Consensus 10 GIIG---~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------~g~-------------~~~~~~~ee 63 (271)
T PRK13302 10 AIAG---LGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------LRR-------------PPPVVPLDQ 63 (271)
T ss_pred EEEC---ccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------cCC-------------CcccCCHHH
Confidence 5565 79999998888876 377775 789998765433220 110 123467787
Q ss_pred hcccCcEEEEccccchHHHHHHHHHH
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAI 217 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l 217 (290)
.+.++|+|++|.|.+. -.++..+.
T Consensus 64 ll~~~D~Vvi~tp~~~--h~e~~~~a 87 (271)
T PRK13302 64 LATHADIVVEAAPASV--LRAIVEPV 87 (271)
T ss_pred HhcCCCEEEECCCcHH--HHHHHHHH
Confidence 7889999999999665 34554443
No 238
>PRK08618 ornithine cyclodeaminase; Validated
Probab=93.74 E-value=1.3 Score=40.61 Aligned_cols=84 Identities=14% Similarity=0.073 Sum_probs=55.4
Q ss_pred cchhHHHHHHHHH-HcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFA-SAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~-~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
.|.+++..+..+. ..+ -.|.+|+++++..++..+.++..+ +. .+....+++++++++|+|
T Consensus 135 aG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~~------------~~~~~~~~~~~~~~aDiV 196 (325)
T PRK08618 135 TGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------NT------------EIYVVNSADEAIEEADII 196 (325)
T ss_pred CcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------CC------------cEEEeCCHHHHHhcCCEE
Confidence 5777776655543 334 479999999988766555443211 10 122346788889999999
Q ss_pred EEccccchHHHHHHHHHHhhhCCCCcEEEeC
Q psy17416 200 QESVPEILQIKHQVYRAIDIFMSSNTILSSS 230 (290)
Q Consensus 200 ieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 230 (290)
+-|+|..- .++. ..+++|+.+.+-
T Consensus 197 i~aT~s~~----p~i~---~~l~~G~hV~~i 220 (325)
T PRK08618 197 VTVTNAKT----PVFS---EKLKKGVHINAV 220 (325)
T ss_pred EEccCCCC----cchH---HhcCCCcEEEec
Confidence 99999663 4443 467889877643
No 239
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.67 E-value=0.58 Score=38.94 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=53.3
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCH---HHHHHHH--------HHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLS---EQIENAK--------NTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~---e~l~~a~--------~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
+|.+|..++..+++.|. +++++|.+. ..+.+-. .+.+....++.+.. +..........+. ..++
T Consensus 7 ~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~ln---p~v~i~~~~~~~~-~~~~ 82 (174)
T cd01487 7 AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREIN---PFVKIEAINIKID-ENNL 82 (174)
T ss_pred cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHC---CCCEEEEEEeecC-hhhH
Confidence 68899999999999998 599998875 2222111 00000000110000 0000000001111 1234
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhh
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIF 220 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~ 220 (290)
++.++++|+||+| .++.+.|+.+.....+.
T Consensus 83 ~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 83 EGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred HHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 5568899999999 77898888888877665
No 240
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=93.62 E-value=0.67 Score=41.26 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=53.0
Q ss_pred eeEEecccchhHHHHHHHHHHc--Cce-eEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASA--GYK-VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~--G~~-V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
|+++ .|.||..++..+.+. +++ +.++|++++..++..+. .| ....+++++
T Consensus 5 gIIG---~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~----------~~--------------~~~~~~~~e 57 (265)
T PRK13304 5 GIVG---CGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK----------TG--------------AKACLSIDE 57 (265)
T ss_pred EEEC---ccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh----------cC--------------CeeECCHHH
Confidence 4555 689999998887765 455 45799998776543330 00 123467777
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEE
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 227 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 227 (290)
.+.++|+|++|.|.+. -.++..++.+ ...+.++
T Consensus 58 ll~~~DvVvi~a~~~~--~~~~~~~al~-~Gk~Vvv 90 (265)
T PRK13304 58 LVEDVDLVVECASVNA--VEEVVPKSLE-NGKDVII 90 (265)
T ss_pred HhcCCCEEEEcCChHH--HHHHHHHHHH-cCCCEEE
Confidence 7789999999998444 4455555443 2344444
No 241
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.55 E-value=0.87 Score=40.87 Aligned_cols=156 Identities=10% Similarity=0.135 Sum_probs=102.3
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-....+|+..- .++++.|+++-.+ |-|+.--- +++.-.++......-..+=|+|++|...+..= .+
T Consensus 62 i~~~~~~l~~~~~~-~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~g-----~~ 135 (278)
T PRK14172 62 IDFKKIKLDESISE-EDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKG-----EK 135 (278)
T ss_pred CEEEEEECCCCCCH-HHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccCccCHhhHHHHhCC-----CC
Confidence 34444456666533 3677777777544 45666544 57777788888876677779999987764421 11
Q ss_pred CCCHHHHHHHHHHHHHh-----CCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEI-----GMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHT 160 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~l-----gk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~ 160 (290)
.--|.|-..+.++++.. ||..+ +++| ....|+-++++|.+.|..|++....
T Consensus 136 ~~~PcTp~av~~lL~~~~i~l~Gk~vv---------ViGr-S~~VGkPla~lL~~~~AtVt~chs~-------------- 191 (278)
T PRK14172 136 CFLPCTPNSVITLIKSLNIDIEGKEVV---------VIGR-SNIVGKPVAQLLLNENATVTICHSK-------------- 191 (278)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEE---------EECC-CccchHHHHHHHHHCCCEEEEeCCC--------------
Confidence 11244445555555554 44444 3445 5778999999999999999877621
Q ss_pred HHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 161 LQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.+++||+||-|+. |..++. .+.+++|++++
T Consensus 192 -------------------------T~~l~~~~~~ADIvIsAvG-----kp~~i~--~~~ik~gavVI 227 (278)
T PRK14172 192 -------------------------TKNLKEVCKKADILVVAIG-----RPKFID--EEYVKEGAIVI 227 (278)
T ss_pred -------------------------CCCHHHHHhhCCEEEEcCC-----CcCccC--HHHcCCCcEEE
Confidence 3456667889999999998 444443 34577999887
No 242
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.54 E-value=1.3 Score=39.89 Aligned_cols=161 Identities=14% Similarity=0.172 Sum_probs=104.0
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+......||+.. +.++++.|+++-.+ |-|+.--- .++.-.++...+..-..+=|+|++|-..+.. ..+
T Consensus 61 i~~~~~~l~~~~~-~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~-----g~~ 134 (281)
T PRK14183 61 IYSITHEMPSTIS-QKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVGRLVT-----GLD 134 (281)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChhhhhHHhc-----CCC
Confidence 3444556677764 44688888888554 35665444 5777778888887667777999888765321 112
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~ 165 (290)
.--|.|-..+.+++++.+- ++ ....-.+++| ....|+-++++|.+.|..|++....
T Consensus 135 ~~~PcTp~avi~lL~~~~i-~l---~Gk~vvViGr-S~~VG~Pla~lL~~~~AtVti~hs~------------------- 190 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEI-DV---KGKDVCVVGA-SNIVGKPMAALLLNANATVDICHIF------------------- 190 (281)
T ss_pred CCCCCcHHHHHHHHHHcCC-CC---CCCEEEEECC-CCcchHHHHHHHHHCCCEEEEeCCC-------------------
Confidence 2235556666777776642 11 1122234445 4677899999999999888765321
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.++.||+||-|+. |..++. .+.+++|++++
T Consensus 191 --------------------T~~l~~~~~~ADIvV~AvG-----kp~~i~--~~~vk~gavvI 226 (281)
T PRK14183 191 --------------------TKDLKAHTKKADIVIVGVG-----KPNLIT--EDMVKEGAIVI 226 (281)
T ss_pred --------------------CcCHHHHHhhCCEEEEecC-----cccccC--HHHcCCCcEEE
Confidence 2345556889999999998 445544 34677999887
No 243
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.48 E-value=1.3 Score=39.94 Aligned_cols=162 Identities=10% Similarity=0.080 Sum_probs=104.6
Q ss_pred cCcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC
Q psy17416 10 DAIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA 84 (290)
Q Consensus 10 ~~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~ 84 (290)
+.+......+|+.. ..++.+.|+++-.+ |-|+.--- .++.-.++.+.+..-..+=|+|++|-..+..- .
T Consensus 59 Gi~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~-----~ 132 (282)
T PRK14169 59 GVRSLMFRLPEATT-QADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWAN-----E 132 (282)
T ss_pred CCEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhHHHhcC-----C
Confidence 34555666777744 33677888877543 45666555 57777788888876677779999887654321 1
Q ss_pred CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHH
Q psy17416 85 AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 85 ~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~ 164 (290)
+.--|.|-..+.++++..|- ++ ..-.-.+++| ....|+-++++|.+.|..|++...
T Consensus 133 ~~~~PcTp~avi~lL~~~~i-~l---~Gk~vvViGr-S~iVGkPla~lL~~~~atVtichs------------------- 188 (282)
T PRK14169 133 PTVVASTPYGIMALLDAYDI-DV---AGKRVVIVGR-SNIVGRPLAGLMVNHDATVTIAHS------------------- 188 (282)
T ss_pred CCCCCCCHHHHHHHHHHhCC-CC---CCCEEEEECC-CccchHHHHHHHHHCCCEEEEECC-------------------
Confidence 11234555555666665542 11 1112234455 577899999999999998886631
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
-|.++.+.+++||+||-|+. |..++. .+.+++|++++
T Consensus 189 --------------------~T~~l~~~~~~ADIvI~AvG-----~p~~i~--~~~vk~GavVI 225 (282)
T PRK14169 189 --------------------KTRNLKQLTKEADILVVAVG-----VPHFIG--ADAVKPGAVVI 225 (282)
T ss_pred --------------------CCCCHHHHHhhCCEEEEccC-----CcCccC--HHHcCCCcEEE
Confidence 13456667889999999998 444544 34678999887
No 244
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=93.31 E-value=0.52 Score=42.45 Aligned_cols=140 Identities=13% Similarity=0.136 Sum_probs=90.0
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHH--HHHHhhcCCCcEEeecCCCCChH--HHhcccCCCCceeeeccCCCCC---
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS--VLSEHSTHRSQFIVAHPVNPPY--- 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~--~~~~~~~~~~~i~~snts~~~~~--~l~~~~~~~~r~~g~hf~~P~~--- 74 (290)
++..|+.++||+||=+++.+-+++.=+| ..+-+.+++++++...|+.=|.. ++++.... .|.+|.-=|-
T Consensus 49 ~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~----~G~~~lDAPVsGg 124 (286)
T COG2084 49 ASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAA----KGLEFLDAPVSGG 124 (286)
T ss_pred CCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCcEEecCccCC
Confidence 4567899999999999999999988888 45666677888777554333332 66666642 3556654221
Q ss_pred ----CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccc-eee---EEecc-cchhHHHHH--HHHH-HcCceeEE
Q psy17416 75 ----FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI-RGF---ALNRI-HGLIGQAWA--MIFA-SAGYKVSL 142 (290)
Q Consensus 75 ----~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~-~gf---~~nri-~G~~g~~ia--~~~~-~~G~~V~l 142 (290)
..-..-|+.| -+++.++++..++..+|+..+.+ ++. .|. +.|.+ .+.....++ +.++ +.|
T Consensus 125 ~~~A~~GtLtimvG--G~~~~f~r~~pvl~~~g~~i~~~-G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G----- 196 (286)
T COG2084 125 VPGAAAGTLTIMVG--GDAEAFERAKPVLEAMGKNIVHV-GPVGAGQAAKLANNILLAGNIAALAEALALAEKAG----- 196 (286)
T ss_pred chhhhhCceEEEeC--CCHHHHHHHHHHHHHhcCceEEE-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 1223334444 58999999999999999999998 565 222 34443 232222222 2333 445
Q ss_pred ecCCHHHHHHHHH
Q psy17416 143 YDVLSEQIENAKN 155 (290)
Q Consensus 143 ~d~~~e~l~~a~~ 155 (290)
.+++.+.+++.
T Consensus 197 --ld~~~~~~vi~ 207 (286)
T COG2084 197 --LDPDVVLEVIS 207 (286)
T ss_pred --CCHHHHHHHHh
Confidence 77887777665
No 245
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.04 E-value=1 Score=40.45 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=100.6
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-....+|+..- .++++.|+++-.+ |-|+.--- .++.-.++......-..+=|+|+.|-..+..=.+ +
T Consensus 60 i~~~~~~l~~~~t~-~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~----~ 134 (282)
T PRK14166 60 IKSLVYHLNENTTQ-NELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGLE----S 134 (282)
T ss_pred CEEEEEECCCCCCH-HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCC----C
Confidence 34444455666433 3688888877544 35666544 5777778888887667777999888765321101 1
Q ss_pred CCCHHHHHHHHHHHHHh-----CCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEI-----GMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHT 160 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~l-----gk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~ 160 (290)
.--|.|-..+.++++.. ||..++ ++| ....|+-++++|.+.|..|++....
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvV---------vGr-S~iVGkPla~lL~~~~atVt~chs~-------------- 190 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVI---------IGA-SNIVGRPMATMLLNAGATVSVCHIK-------------- 190 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEE---------ECC-CCcchHHHHHHHHHCCCEEEEeCCC--------------
Confidence 11233444455555554 454443 444 5677899999999989888865521
Q ss_pred HHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 161 LQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.+++||+||-|+. |..++. ...+++|++++
T Consensus 191 -------------------------T~nl~~~~~~ADIvIsAvG-----kp~~i~--~~~vk~GavVI 226 (282)
T PRK14166 191 -------------------------TKDLSLYTRQADLIIVAAG-----CVNLLR--SDMVKEGVIVV 226 (282)
T ss_pred -------------------------CCCHHHHHhhCCEEEEcCC-----CcCccC--HHHcCCCCEEE
Confidence 3456667889999999998 444544 34678999887
No 246
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.96 E-value=1.5 Score=39.37 Aligned_cols=160 Identities=12% Similarity=0.095 Sum_probs=101.0
Q ss_pred cEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC--
Q psy17416 12 IFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA-- 84 (290)
Q Consensus 12 d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~-- 84 (290)
+.-....+|+.. +.++++.|+++-.++ -|+.--- ..+.-.++.....--..+=|+|+.|...++. +
T Consensus 62 ~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~------g~~ 134 (282)
T PRK14180 62 DSQVITLPEHTT-ESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQL------RDK 134 (282)
T ss_pred EEEEEECCCCCC-HHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHHHhc------CCC
Confidence 333444566643 346777777775443 4666544 5677778888887666777999999876431 2
Q ss_pred CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHH
Q psy17416 85 AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 85 ~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~ 164 (290)
..--|.|-.++.++++..|- ++ ..-.-.+++| ....|+-++++|.+.|..|++....
T Consensus 135 ~~~~PcTp~aii~lL~~y~i-~l---~Gk~vvViGr-S~~VGkPla~lL~~~~ATVt~chs~------------------ 191 (282)
T PRK14180 135 KCLESCTPKGIMTMLREYGI-KT---EGAYAVVVGA-SNVVGKPVSQLLLNAKATVTTCHRF------------------ 191 (282)
T ss_pred CCcCCCCHHHHHHHHHHhCC-CC---CCCEEEEECC-CCcchHHHHHHHHHCCCEEEEEcCC------------------
Confidence 11123444555555555432 11 1112234445 5778999999999999998876521
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
|.|+.+.++.||+||-|+. |..++. ...++++++++-
T Consensus 192 ---------------------T~dl~~~~k~ADIvIsAvG-----kp~~i~--~~~vk~gavVID 228 (282)
T PRK14180 192 ---------------------TTDLKSHTTKADILIVAVG-----KPNFIT--ADMVKEGAVVID 228 (282)
T ss_pred ---------------------CCCHHHHhhhcCEEEEccC-----CcCcCC--HHHcCCCcEEEE
Confidence 3455556789999999998 555554 256789998873
No 247
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.96 E-value=0.56 Score=44.46 Aligned_cols=106 Identities=18% Similarity=0.127 Sum_probs=66.9
Q ss_pred CCcHHhhcccCcEEEEcccCChH--------HHHHHHHHHHhhcCCCcEEeecCCCCChH---HHhc-ccCC--CCc-ee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQ--------IKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSE-HSTH--RSQ-FI 65 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~--------~K~~~~~~~~~~~~~~~i~~snts~~~~~---~l~~-~~~~--~~r-~~ 65 (290)
++|+++++++||+||-|+|-... .-.+..+.+.+.+++++++. ++|+++++ +++. ...+ .-+ ..
T Consensus 67 ~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi-~~STv~pgt~~~l~~~~~~~~~g~~~~~ 145 (411)
T TIGR03026 67 TTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVV-LESTVPPGTTEEVVKPILERASGLKLGE 145 (411)
T ss_pred ECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEE-EeCcCCCCchHHHHHHHHHhhcCCCCCC
Confidence 35778889999999999997743 34556677888888888776 45676655 4432 2111 000 11
Q ss_pred eec-cCCCCCCCCee---------eEeeCCCCCHHHHHHHHHHHHHhC-CccEEE
Q psy17416 66 VAH-PVNPPYFIPLV---------EIVPAAWTSERVITRTREIMTEIG-MKPVTL 109 (290)
Q Consensus 66 g~h-f~~P~~~~~lv---------Eiv~~~~t~~~~~~~~~~~~~~lg-k~~v~v 109 (290)
..+ -++|....+-- -++.| .+++..+.+..++..++ +.++.+
T Consensus 146 d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~ 198 (411)
T TIGR03026 146 DFYLAYNPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLV 198 (411)
T ss_pred CceEEECCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEc
Confidence 111 22444333211 35666 58999999999999998 566665
No 248
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=92.89 E-value=0.17 Score=46.20 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=51.6
Q ss_pred chhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-C-C-chHhhcccCc
Q psy17416 123 GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-T-P-VLRECLEDAI 197 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~-~-~l~~~l~~aD 197 (290)
|..|..+|..+...|+ ++.++|+++ ..-.++. +. +.. ...++.. + + ++.+++++||
T Consensus 9 G~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D-L~------------~~~-----~~~~i~~~~~~~~~~~~~~daD 69 (312)
T TIGR01772 9 GGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD-LS------------HIP-----TAASVKGFSGEEGLENALKGAD 69 (312)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch-hh------------cCC-----cCceEEEecCCCchHHHcCCCC
Confidence 8899999999888776 799999987 2111111 00 000 1123332 1 2 3345799999
Q ss_pred EEEEccc--------------cchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 198 FIQESVP--------------EILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 198 lVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+||.+.- .|..+-+++.+++.++. +++++.
T Consensus 70 ivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iii 113 (312)
T TIGR01772 70 VVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMIL 113 (312)
T ss_pred EEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEE
Confidence 9996643 23445566666788775 455444
No 249
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.87 E-value=0.66 Score=39.00 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHH
Q psy17416 87 TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQ 166 (290)
Q Consensus 87 t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~ 166 (290)
|.-..++.+.+.++++|.. . ++..-.++- -.|.+|+.++..++..|++|.+++++++.++...+.+....
T Consensus 7 ta~aav~~~~~~l~~~~~~---l-~~~~vlVlG-gtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~----- 76 (194)
T cd01078 7 TAAAAVAAAGKALELMGKD---L-KGKTAVVLG-GTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARF----- 76 (194)
T ss_pred HHHHHHHHHHHHHHHhCcC---C-CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhc-----
Confidence 3455667777777766531 2 222222221 13788999999999999999999999877665544332110
Q ss_pred cCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccch
Q psy17416 167 KGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL 207 (290)
Q Consensus 167 ~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~ 207 (290)
+.. .. . ....-..++.++++++|+||-|.|...
T Consensus 77 -~~~---~~---~-~~~~~~~~~~~~~~~~diVi~at~~g~ 109 (194)
T cd01078 77 -GEG---VG---A-VETSDDAARAAAIKGADVVFAAGAAGV 109 (194)
T ss_pred -CCc---EE---E-eeCCCHHHHHHHHhcCCEEEECCCCCc
Confidence 000 00 0 000011234457889999999998665
No 250
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.86 E-value=2.8 Score=41.01 Aligned_cols=34 Identities=26% Similarity=0.227 Sum_probs=29.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.|.+|...+..+...|..|.++|.+++.++.+.+
T Consensus 172 aG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 172 AGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 6899999999888899999999999998766554
No 251
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=92.80 E-value=1 Score=40.52 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=65.6
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHH--HHHHhhcCCCcEEeecCCCCChH---HHhcccCCCCceeeeccCCCCCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF 75 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~--~~~~~~~~~~~i~~snts~~~~~---~l~~~~~~~~r~~g~hf~~P~~~ 75 (290)
+++++++++++|+||=|+|-+-.++.=++ ..+-...+++.++. ++|++++. ++++.+.. -|.+|..-| .
T Consensus 43 ~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~g~~vi-d~st~~p~~~~~~~~~~~~----~g~~~vdaP-v 116 (288)
T TIGR01692 43 AASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAKGSLLI-DCSTIDPDSARKLAELAAA----HGAVFMDAP-V 116 (288)
T ss_pred cCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHH----cCCcEEECC-C
Confidence 35788899999999999998776653332 56666667777665 44466665 44444421 255554421 1
Q ss_pred C---------CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 76 I---------PLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 76 ~---------~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+ .+. ++.| .+++.++.+..++..+|+..+.+
T Consensus 117 ~Gg~~~a~~g~l~-~~~g--g~~~~~~~~~~~l~~~g~~~~~~ 156 (288)
T TIGR01692 117 SGGVGGARAGTLT-FMVG--GVAEEFAAAEPVLGPMGRNIVHC 156 (288)
T ss_pred CCCHHHHhhCcEE-EEEC--CCHHHHHHHHHHHHHhcCCeEee
Confidence 1 222 2233 35788999999999999988887
No 252
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.74 E-value=0.53 Score=42.93 Aligned_cols=93 Identities=17% Similarity=0.099 Sum_probs=54.2
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..+|..+...|. ++.++|.+++..+.-...+.+.. ..... ..-.+. +.+++ .+++||+|
T Consensus 7 aG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~------~~~~~------~~~~i~-~~~y~-~~~~aDiv 72 (307)
T cd05290 7 AGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHAT------ALTYS------TNTKIR-AGDYD-DCADADII 72 (307)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhh------ccCCC------CCEEEE-ECCHH-HhCCCCEE
Confidence 58899999999888876 79999998765432222222110 00000 001233 35666 58999999
Q ss_pred EEcccc----------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPE----------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe----------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+.-. |..+-+++..++.+..+.+.+|.
T Consensus 73 vitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~iv 117 (307)
T cd05290 73 VITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIIL 117 (307)
T ss_pred EECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 987542 12244555566777775554443
No 253
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.70 E-value=0.14 Score=47.86 Aligned_cols=142 Identities=17% Similarity=0.060 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHH
Q psy17416 22 LQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTE 101 (290)
Q Consensus 22 ~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~ 101 (290)
++.|-+++-+|+.+|..- ++.+.+++.++.. +.-||-||.||..- .|...=|-=..+....++.
T Consensus 213 LAtKIsFiNEia~ice~~--------g~D~~~V~~gIGl-D~RIG~~fl~aG~G-------yGGsCfPKD~~AL~~~a~~ 276 (414)
T COG1004 213 LATKISFINEIANICEKV--------GADVKQVAEGIGL-DPRIGNHFLNAGFG-------YGGSCFPKDTKALIANAEE 276 (414)
T ss_pred HHHHHHHHHHHHHHHHHh--------CCCHHHHHHHcCC-CchhhHhhCCCCCC-------CCCcCCcHhHHHHHHHHHh
Confidence 445666666666666432 5677888887763 44589999999751 1222223333333344444
Q ss_pred hCCccEE------EeccceeeEEecc-------------cc------------hhHHHHHHHHHHcCceeEEecCCHHHH
Q psy17416 102 IGMKPVT------LTTEIRGFALNRI-------------HG------------LIGQAWAMIFASAGYKVSLYDVLSEQI 150 (290)
Q Consensus 102 lgk~~v~------v~~d~~gf~~nri-------------~G------------~~g~~ia~~~~~~G~~V~l~d~~~e~l 150 (290)
+|-.+-. ++...+.+++..+ +| .=...++..+.+.|.+|..||....
T Consensus 277 ~~~~~~ll~avv~vN~~qk~~~~~~i~~~~~l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~-- 354 (414)
T COG1004 277 LGYDPNLLEAVVEVNERRKDKLAEKILNHLGLKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAM-- 354 (414)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhh--
Confidence 4422211 1111111111110 11 1122455667778889999885432
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccc
Q psy17416 151 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVP 204 (290)
Q Consensus 151 ~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavp 204 (290)
+.+.. ....+.+.+++++++++||.++.+..
T Consensus 355 ~~~~~-----------------------~~~~~~~~~~~~~~~~~aDaivi~te 385 (414)
T COG1004 355 ENAFR-----------------------NFPDVELESDAEEALKGADAIVINTE 385 (414)
T ss_pred HHHHh-----------------------cCCCceEeCCHHHHHhhCCEEEEecc
Confidence 22222 00134667899999999999998765
No 254
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.66 E-value=2 Score=36.89 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=55.8
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCH---HHHHHH--------HHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLS---EQIENA--------KNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~---e~l~~a--------~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
+|.+|..++..+++.|. +++++|.+. ..+.+- ..+.+....++.+.. ...........+. ..+.
T Consensus 36 ~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln---p~v~v~~~~~~i~-~~~~ 111 (212)
T PRK08644 36 AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN---PFVEIEAHNEKID-EDNI 111 (212)
T ss_pred cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC---CCCEEEEEeeecC-HHHH
Confidence 68999999999999997 588998872 222110 011111111111100 0000000011111 1234
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
++.++++|+||+| .++.+.|..+........+...|.++
T Consensus 112 ~~~~~~~DvVI~a-~D~~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 112 EELFKDCDIVVEA-FDNAETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHHHcCCCEEEEC-CCCHHHHHHHHHHHHHhCCCCEEEee
Confidence 4567899999999 57888888777766665444445443
No 255
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.62 E-value=0.28 Score=40.43 Aligned_cols=91 Identities=14% Similarity=0.144 Sum_probs=56.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..++..+.+.|++|+.+.++++.++. .. ...... ..+.-..++.++++++|.||.
T Consensus 7 tG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~----------~~~~~~---------~d~~d~~~~~~al~~~d~vi~ 66 (183)
T PF13460_consen 7 TGFVGRALAKQLLRRGHEVTALVRSPSKAED-SP----------GVEIIQ---------GDLFDPDSVKAALKGADAVIH 66 (183)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CT----------TEEEEE---------SCTTCHHHHHHHHTTSSEEEE
T ss_pred CChHHHHHHHHHHHCCCEEEEEecCchhccc-cc----------ccccce---------eeehhhhhhhhhhhhcchhhh
Confidence 3788999999999999999999999986654 00 000001 111112456678899999999
Q ss_pred cccc---chHHHHHHHHHHhhhCCCCcEEEeCCC
Q psy17416 202 SVPE---ILQIKHQVYRAIDIFMSSNTILSSSTS 232 (290)
Q Consensus 202 avpe---~~~~k~~~~~~l~~~~~~~~ii~s~ts 232 (290)
+++. +.+.-+.+++.+...=.+..++.|+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 67 AAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp CCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred hhhhhcccccccccccccccccccccceeeeccc
Confidence 9983 333444555555543223334445443
No 256
>PRK04148 hypothetical protein; Provisional
Probab=92.59 E-value=1 Score=35.83 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=59.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.| .|.++|..+.+.|++|+..|.+++.++.+.+. +. . ...+.+ +..+++ .-+++|+|-+
T Consensus 25 ~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~~--~-----~v~dDl-f~p~~~-~y~~a~liys 83 (134)
T PRK04148 25 IG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------GL--N-----AFVDDL-FNPNLE-IYKNAKLIYS 83 (134)
T ss_pred ec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------CC--e-----EEECcC-CCCCHH-HHhcCCEEEE
Confidence 46 67778888999999999999999987776552 11 0 011111 133443 4578999998
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSS 230 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ 230 (290)
.-| ....+.-+.+|.+....+.+|..-
T Consensus 84 irp--p~el~~~~~~la~~~~~~~~i~~l 110 (134)
T PRK04148 84 IRP--PRDLQPFILELAKKINVPLIIKPL 110 (134)
T ss_pred eCC--CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 887 333567777899999999888643
No 257
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.51 E-value=3.6 Score=37.16 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=103.9
Q ss_pred cCcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC
Q psy17416 10 DAIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA 84 (290)
Q Consensus 10 ~~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~ 84 (290)
+.+.-....+|+.. +.++++.|+++-.+ |-|+.--- .++.-.++.....--..+=|+|.+|=..+.. ..
T Consensus 61 Gi~~~~~~l~~~~~-~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~-----~~ 134 (286)
T PRK14175 61 GMISEIVHLEETAT-EEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYI-----DE 134 (286)
T ss_pred CCEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhc-----CC
Confidence 34555556677753 45788888887544 24555433 4677778888887666777999887554321 11
Q ss_pred CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHH
Q psy17416 85 AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 85 ~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~ 164 (290)
+.--|.|-..+.++++..+. .+ ....-.+++| .+.+|+-++.++.+.|..|++.....
T Consensus 135 ~~~~PcTp~ai~~ll~~~~i---~l-~Gk~vvVIGr-s~~VG~pla~lL~~~gatVtv~~s~t----------------- 192 (286)
T PRK14175 135 QTFVPCTPLGIMEILKHADI---DL-EGKNAVVIGR-SHIVGQPVSKLLLQKNASVTILHSRS----------------- 192 (286)
T ss_pred CCCCCCcHHHHHHHHHHcCC---CC-CCCEEEEECC-CchhHHHHHHHHHHCCCeEEEEeCCc-----------------
Confidence 12235555666666666542 12 2223344444 45689999999999999999887432
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
.++.+.+++||+||-|++-. .++.. +.++++++++-
T Consensus 193 ----------------------~~l~~~~~~ADIVIsAvg~p-----~~i~~--~~vk~gavVID 228 (286)
T PRK14175 193 ----------------------KDMASYLKDADVIVSAVGKP-----GLVTK--DVVKEGAVIID 228 (286)
T ss_pred ----------------------hhHHHHHhhCCEEEECCCCC-----cccCH--HHcCCCcEEEE
Confidence 23445678999999999843 33332 35688888873
No 258
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.45 E-value=2.5 Score=38.10 Aligned_cols=157 Identities=12% Similarity=0.150 Sum_probs=103.8
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-....+|+.. ..++++.|+++-.++ -|+.--- .++.-.++...+..-..+=|+|++|-..+.. ..+
T Consensus 61 i~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g~l~~-----~~~ 134 (284)
T PRK14170 61 MKSVLIELPENVT-EEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-----GKD 134 (284)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhhHHhC-----CCC
Confidence 4455556677754 457888888875543 3665444 5777778888887667777999988766432 111
Q ss_pred CCCHHHHHHHHHHHHHh-----CCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEI-----GMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHT 160 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~l-----gk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~ 160 (290)
.--|.|-..+.++++.. ||..++ ++| ....|+-++++|.+.|..|++...
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvV---------vGr-S~iVGkPla~lL~~~~atVtichs--------------- 189 (284)
T PRK14170 135 SFVPCTPAGIIELIKSTGTQIEGKRAVV---------IGR-SNIVGKPVAQLLLNENATVTIAHS--------------- 189 (284)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEE---------ECC-CCcchHHHHHHHHHCCCEEEEeCC---------------
Confidence 12244445555555554 454444 444 567789999999999999987642
Q ss_pred HHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 161 LQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
-|.++.+.+++||+||-|+. |..++. .+.+++|++++-
T Consensus 190 ------------------------~T~~l~~~~~~ADIvI~AvG-----~~~~i~--~~~vk~GavVID 227 (284)
T PRK14170 190 ------------------------RTKDLPQVAKEADILVVATG-----LAKFVK--KDYIKPGAIVID 227 (284)
T ss_pred ------------------------CCCCHHHHHhhCCEEEEecC-----CcCccC--HHHcCCCCEEEE
Confidence 13456667899999999998 444443 345779998873
No 259
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.34 E-value=2 Score=38.85 Aligned_cols=160 Identities=10% Similarity=0.073 Sum_probs=103.1
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-.-..+|+..- .++++.|+++-.+ |-|+.--- .++.-.++.+....-..+=|+|++|-..++. +.
T Consensus 62 i~~~~~~l~~~~~e-~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~------g~ 134 (294)
T PRK14187 62 LRSETILLPSTISE-SSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRLFT------GQ 134 (294)
T ss_pred CEEEEEECCCCCCH-HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhC------CC
Confidence 34444456666533 3677888887554 34666554 5777788888888667788999988765431 21
Q ss_pred ---CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHH
Q psy17416 86 ---WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQ 162 (290)
Q Consensus 86 ---~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~ 162 (290)
.--|.|-..+.++++..|- ++ ....-.+++| ....|+-++++|.+.|..|++....
T Consensus 135 ~~~~~~PcTp~avi~lL~~~~i-~l---~Gk~vvViGr-S~iVGkPla~lL~~~~aTVt~chs~---------------- 193 (294)
T PRK14187 135 KKNCLIPCTPKGCLYLIKTITR-NL---SGSDAVVIGR-SNIVGKPMACLLLGENCTVTTVHSA---------------- 193 (294)
T ss_pred CCCCccCcCHHHHHHHHHHhCC-CC---CCCEEEEECC-CccchHHHHHHHhhCCCEEEEeCCC----------------
Confidence 1124455555666665542 11 1112234555 5778999999999999999876631
Q ss_pred HHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 163 DYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 163 ~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.+++||+||-|+. |..++. ...++++++++
T Consensus 194 -----------------------T~~l~~~~~~ADIvVsAvG-----kp~~i~--~~~ik~gaiVI 229 (294)
T PRK14187 194 -----------------------TRDLADYCSKADILVAAVG-----IPNFVK--YSWIKKGAIVI 229 (294)
T ss_pred -----------------------CCCHHHHHhhCCEEEEccC-----CcCccC--HHHcCCCCEEE
Confidence 3456667889999999998 444443 34567899887
No 260
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.07 E-value=2 Score=38.81 Aligned_cols=157 Identities=10% Similarity=0.112 Sum_probs=103.3
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+......+|+..- .++++.|+++-.+ |-|+.--- .++.-.++......-..+=|+|+.|-..+..=- .+
T Consensus 62 i~~~~~~l~~~~~~-~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~----~~ 136 (288)
T PRK14171 62 IDTLLVNLSTTIHT-NDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGI----SQ 136 (288)
T ss_pred CEEEEEECCCCCCH-HHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhhhcCC----CC
Confidence 44445556666543 4688888887544 35666544 577788888888766777799999876643110 01
Q ss_pred CCCHHHHHHHHHHHHHhC-----CccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIG-----MKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHT 160 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lg-----k~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~ 160 (290)
.--|.|-..+.++++..+ |..+ +++| ....|+-++++|.+.|..|++....
T Consensus 137 ~~~PcTp~av~~lL~~y~i~l~GK~vv---------ViGr-S~iVGkPla~lL~~~~ATVtichs~-------------- 192 (288)
T PRK14171 137 GFIPCTALGCLAVIKKYEPNLTGKNVV---------IIGR-SNIVGKPLSALLLKENCSVTICHSK-------------- 192 (288)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEE---------EECC-CCcchHHHHHHHHHCCCEEEEeCCC--------------
Confidence 123445555666666654 4433 4445 5678999999999999998876521
Q ss_pred HHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 161 LQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.+++||+||-|+.-. .++. ...+++|++++
T Consensus 193 -------------------------T~~L~~~~~~ADIvV~AvGkp-----~~i~--~~~vk~GavVI 228 (288)
T PRK14171 193 -------------------------THNLSSITSKADIVVAAIGSP-----LKLT--AEYFNPESIVI 228 (288)
T ss_pred -------------------------CCCHHHHHhhCCEEEEccCCC-----CccC--HHHcCCCCEEE
Confidence 345666788999999999833 3333 34577999887
No 261
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.94 E-value=2.4 Score=38.20 Aligned_cols=162 Identities=13% Similarity=0.115 Sum_probs=104.3
Q ss_pred cCcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC
Q psy17416 10 DAIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA 84 (290)
Q Consensus 10 ~~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~ 84 (290)
+.+......+|+.. ..++.+.|+++-.+ |-|+.--- .++.-.++.+....-..+=|+|+.|-..+.. ..
T Consensus 58 Gi~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~-----~~ 131 (287)
T PRK14173 58 GLRSQVEVLPESTS-QEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWM-----GG 131 (287)
T ss_pred CCEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhHHHhc-----CC
Confidence 34555666777752 34677777776443 45666544 5777778888887667777999888765331 11
Q ss_pred CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHH
Q psy17416 85 AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 85 ~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~ 164 (290)
+.--|.|-..+.++++..|- ++ ..-.-.+++| ....|+-++++|.+.|..|++...
T Consensus 132 ~~~~PcTp~avi~lL~~~~i-~l---~Gk~vvViGr-S~iVGkPla~lL~~~~aTVtichs------------------- 187 (287)
T PRK14173 132 EALEPCTPAGVVRLLKHYGI-PL---AGKEVVVVGR-SNIVGKPLAALLLREDATVTLAHS------------------- 187 (287)
T ss_pred CCCCCCCHHHHHHHHHHcCC-CC---CCCEEEEECC-CCccHHHHHHHHHHCCCEEEEeCC-------------------
Confidence 11234455555666666542 11 1112234445 577899999999999999886641
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
-|.++.+.+++||+||-|+. |..++. .+.+++|++++
T Consensus 188 --------------------~T~~l~~~~~~ADIvIsAvG-----kp~~i~--~~~vk~GavVI 224 (287)
T PRK14173 188 --------------------KTQDLPAVTRRADVLVVAVG-----RPHLIT--PEMVRPGAVVV 224 (287)
T ss_pred --------------------CCCCHHHHHhhCCEEEEecC-----CcCccC--HHHcCCCCEEE
Confidence 13466667899999999998 444543 45678999887
No 262
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.94 E-value=2.6 Score=38.18 Aligned_cols=162 Identities=11% Similarity=0.096 Sum_probs=101.4
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+..+...+|+. .+.++.+.|+++-.+ |-|+.--- +++.-.++......-..+=|+|++|-..++.= ..
T Consensus 62 i~~~~~~l~~~~-~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~-----~~ 135 (297)
T PRK14186 62 IASFGKHLPADT-SQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNLGRLVKG-----EP 135 (297)
T ss_pred CEEEEEECCCCC-CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCC-----CC
Confidence 444445566664 455777777777443 35665544 57777788888876677779998886543210 01
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~ 165 (290)
.--|.|-.++.++++..|- + + ....-.+++| ....|+-++++|.+.|..|+....
T Consensus 136 ~~~PcTp~aii~lL~~~~i-~--l-~Gk~vvVIGr-S~iVGkPla~lL~~~~atVtv~hs-------------------- 190 (297)
T PRK14186 136 GLRSCTPAGVMRLLRSQQI-D--I-AGKKAVVVGR-SILVGKPLALMLLAANATVTIAHS-------------------- 190 (297)
T ss_pred CCCCCCHHHHHHHHHHhCC-C--C-CCCEEEEECC-CccchHHHHHHHHHCCCEEEEeCC--------------------
Confidence 1123445555555655542 1 1 1112234455 577899999999999999877631
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
-|.++.+.+++||+||-|+. |..++. ...+++|++++-
T Consensus 191 -------------------~T~~l~~~~~~ADIvIsAvG-----kp~~i~--~~~ik~gavVID 228 (297)
T PRK14186 191 -------------------RTQDLASITREADILVAAAG-----RPNLIG--AEMVKPGAVVVD 228 (297)
T ss_pred -------------------CCCCHHHHHhhCCEEEEccC-----CcCccC--HHHcCCCCEEEE
Confidence 13456667889999999998 444443 346789998873
No 263
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=91.89 E-value=0.6 Score=41.87 Aligned_cols=92 Identities=15% Similarity=0.052 Sum_probs=47.9
Q ss_pred cchhHHHHHHHHHHc--CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-CC---chHhhccc
Q psy17416 122 HGLIGQAWAMIFASA--GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-TP---VLRECLED 195 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~--G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~---~l~~~l~~ 195 (290)
.|++--....+.... |..|..+|+++++.+.+.+-+....+- -.++++ +. +....+++
T Consensus 129 SGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L----------------~~~m~f~~~d~~~~~~dl~~ 192 (276)
T PF03059_consen 129 SGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL----------------SKRMSFITADVLDVTYDLKE 192 (276)
T ss_dssp --SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----------------SSEEEEES-GGGG-GG---
T ss_pred CCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc----------------cCCeEEEecchhcccccccc
Confidence 465544433333333 467889999999998887755522210 011222 11 22223678
Q ss_pred CcEEEEcccc--chHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 196 AIFIQESVPE--ILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 196 aDlVieavpe--~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
.|+|+.|.-- +.+-|.+++..|.+.+++|+++..
T Consensus 193 ~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 193 YDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp -SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred CCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 9999988652 233699999999999999998873
No 264
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=91.87 E-value=1.7 Score=41.02 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=53.2
Q ss_pred chhHHHHHHHHHHcCc-------eeEEe--cCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccC-CchHhh
Q psy17416 123 GLIGQAWAMIFASAGY-------KVSLY--DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGT-PVLREC 192 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~-------~V~l~--d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~l~~~ 192 (290)
|..|..+|..+...|. .+.++ |.+.+.++.-.-.+.+... ..+.+++++ .+++ +
T Consensus 54 G~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~---------------~~~~~v~i~~~~y~-~ 117 (387)
T TIGR01757 54 GMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY---------------PLLREVSIGIDPYE-V 117 (387)
T ss_pred cHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh---------------hhcCceEEecCCHH-H
Confidence 8899999999887764 24455 7777655432222222110 111233433 4444 6
Q ss_pred cccCcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 193 LEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 193 l~~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
++|||+||.+.-- |..+-+++..+|.++.++++++.
T Consensus 118 ~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~ivi 167 (387)
T TIGR01757 118 FEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVL 167 (387)
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 8999999975432 23345566667888776777655
No 265
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=91.86 E-value=0.99 Score=41.16 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=44.3
Q ss_pred cchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|.||..++..+...| ..|.+++++++......+. .|. .....+++.+.+.++|+||
T Consensus 186 aG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----------~g~------------~~~~~~~~~~~l~~aDvVi 243 (311)
T cd05213 186 AGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----------LGG------------NAVPLDELLELLNEADVVI 243 (311)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----------cCC------------eEEeHHHHHHHHhcCCEEE
Confidence 5889998888887755 6899999999766543331 111 0001134566788999999
Q ss_pred EccccchH
Q psy17416 201 ESVPEILQ 208 (290)
Q Consensus 201 eavpe~~~ 208 (290)
.|++..-.
T Consensus 244 ~at~~~~~ 251 (311)
T cd05213 244 SATGAPHY 251 (311)
T ss_pred ECCCCCch
Confidence 99997664
No 266
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=91.79 E-value=0.9 Score=36.48 Aligned_cols=90 Identities=16% Similarity=0.277 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcC
Q psy17416 89 ERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKG 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g 168 (290)
+.+.+.+.+++++.|. ++ +...-.++|| ....|..++.++.+.|..|...+.+
T Consensus 9 p~t~~a~~~ll~~~~~-~~---~gk~v~VvGr-s~~vG~pla~lL~~~gatV~~~~~~---------------------- 61 (140)
T cd05212 9 SPVAKAVKELLNKEGV-RL---DGKKVLVVGR-SGIVGAPLQCLLQRDGATVYSCDWK---------------------- 61 (140)
T ss_pred ccHHHHHHHHHHHcCC-CC---CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEeCCC----------------------
Confidence 4455666666666553 22 1223345555 4566777777777777777766632
Q ss_pred CCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 169 CLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 169 ~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+.++++.+++||+||-|+....-++.+ .+++|+++..
T Consensus 62 -----------------t~~l~~~v~~ADIVvsAtg~~~~i~~~-------~ikpGa~Vid 98 (140)
T cd05212 62 -----------------TIQLQSKVHDADVVVVGSPKPEKVPTE-------WIKPGATVIN 98 (140)
T ss_pred -----------------CcCHHHHHhhCCEEEEecCCCCccCHH-------HcCCCCEEEE
Confidence 225566789999999999866434333 4779998874
No 267
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=91.68 E-value=1.3 Score=39.66 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=73.8
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHH---hcccCCCCceeeeccCCCCC--CC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL---SEHSTHRSQFIVAHPVNPPY--FI 76 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l---~~~~~~~~r~~g~hf~~P~~--~~ 76 (290)
+|=.||++++|++|==.|.-- ..-.+.+++-...++++|++ ||=++|...| .+.++| +=+|+--|+|+- -|
T Consensus 131 sDD~EAv~~aei~I~ftPfG~-~q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R--~DvgVsS~HPaaVPgt 206 (340)
T TIGR01723 131 TDDREAVEDADIIITWLPKGN-KQPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGR--EDLNVTSYHPGCVPEM 206 (340)
T ss_pred cCcHHHhcCCCEEEEEcCCCC-CchHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCc--ccCCeeccCCCCCCCC
Confidence 444569999999997665432 22567888888999999986 5556676644 444443 445655555542 23
Q ss_pred C-eeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccc
Q psy17416 77 P-LVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 113 (290)
Q Consensus 77 ~-lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~ 113 (290)
+ =+-|+ ....+++.++...++++..||.+..+..+.
T Consensus 207 ~~q~Yi~-egyAtEEqI~klveL~~sa~k~ay~~PA~L 243 (340)
T TIGR01723 207 KGQVYIA-EGYASEEAVNKLYELGKKARGKAFKMPANL 243 (340)
T ss_pred CCceEee-cccCCHHHHHHHHHHHHHhCCCeeecchhh
Confidence 2 23333 457789999999999999999999886553
No 268
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.64 E-value=6.5 Score=38.50 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=30.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+|.+|...++.+...|..|..+|++++.++.+.+
T Consensus 173 aG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 173 AGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 6899999888888889999999999999887766
No 269
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.64 E-value=2.3 Score=38.37 Aligned_cols=162 Identities=12% Similarity=0.109 Sum_probs=100.3
Q ss_pred cCcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC
Q psy17416 10 DAIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA 84 (290)
Q Consensus 10 ~~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~ 84 (290)
+.+......||+.. ..++++.|+++-.+ |-|+.--- .++.-..+.....--..+=|+|++|-..+.. ..
T Consensus 60 Gi~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~-----g~ 133 (285)
T PRK14191 60 GMDSDLHTLQENTT-EAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCS-----QL 133 (285)
T ss_pred CCEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhc-----CC
Confidence 34455556677643 34777888887544 35666544 5777778888887666777999888665321 11
Q ss_pred CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHH
Q psy17416 85 AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 85 ~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~ 164 (290)
+.--|.|-..+.++++..+- ++ ..-.-.+++| ....|+-+|.++.+.|..|++....
T Consensus 134 ~~~~PcTp~avi~lL~~~~i-~l---~Gk~vvVvGr-s~~VG~Pla~lL~~~gAtVtv~hs~------------------ 190 (285)
T PRK14191 134 DGFVPATPMGVMRLLKHYHI-EI---KGKDVVIIGA-SNIVGKPLAMLMLNAGASVSVCHIL------------------ 190 (285)
T ss_pred CCCCCCcHHHHHHHHHHhCC-CC---CCCEEEEECC-CchhHHHHHHHHHHCCCEEEEEeCC------------------
Confidence 11224555555666665432 11 1112223444 4577999999999999999887421
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+.++.+.+++||+||-|+.-. .++. .+.++++++++
T Consensus 191 ---------------------t~~l~~~~~~ADIvV~AvG~p-----~~i~--~~~vk~GavVI 226 (285)
T PRK14191 191 ---------------------TKDLSFYTQNADIVCVGVGKP-----DLIK--ASMVKKGAVVV 226 (285)
T ss_pred ---------------------cHHHHHHHHhCCEEEEecCCC-----CcCC--HHHcCCCcEEE
Confidence 223445678999999999733 3333 23568999887
No 270
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=91.48 E-value=4.3 Score=36.78 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEE-----ecCCHHHHHHHHHHHHHHHHHH
Q psy17416 90 RVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSL-----YDVLSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 90 ~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l-----~d~~~e~l~~a~~~i~~~~~~~ 164 (290)
+.++....+-+..|+ .++-.-.|++.- ..++.++....+..|.+|.+ |..+++-++.|.+..+..
T Consensus 136 Q~LADl~Ti~E~~g~----l~g~k~a~vGDg--NNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~---- 205 (310)
T COG0078 136 QALADLMTIKEHFGS----LKGLKLAYVGDG--NNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKES---- 205 (310)
T ss_pred HHHHHHHHHHHhcCc----ccCcEEEEEcCc--chHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhc----
Confidence 677777777777775 222333455442 56777887788888999977 455666666655522221
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCC
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMS 222 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~ 222 (290)
+ +.+++++|+.+++++||+|.-=+.-+.....+..++.....+
T Consensus 206 -------g--------~~i~~t~d~~eAv~gADvvyTDvWvSMGee~e~~~~~~~~~~ 248 (310)
T COG0078 206 -------G--------GKITLTEDPEEAVKGADVVYTDVWVSMGEEAEAEERRIAFLP 248 (310)
T ss_pred -------C--------CeEEEecCHHHHhCCCCEEEecCcccCcchhhhHHHHHhhCC
Confidence 1 367789999999999999997666655544444444444333
No 271
>PRK07340 ornithine cyclodeaminase; Validated
Probab=91.33 E-value=1.3 Score=40.22 Aligned_cols=81 Identities=11% Similarity=0.032 Sum_probs=55.1
Q ss_pred cchhHHHHHHHHHH-cC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~-~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
.|.+++..+..+.. .+ -+|.+|+++++..++..++++. . + . .+. ..+.++++.++|+|
T Consensus 133 aG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~----~-~-------~~~-~~~~~~av~~aDiV 192 (304)
T PRK07340 133 TGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------L----G-P-------TAE-PLDGEAIPEAVDLV 192 (304)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------c----C-C-------eeE-ECCHHHHhhcCCEE
Confidence 57788877777653 45 4799999999887765554321 0 0 0 111 36778889999999
Q ss_pred EEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 200 QESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 200 ieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
|-|+|..- .++.. .+++++.|..
T Consensus 193 itaT~s~~----Pl~~~---~~~~g~hi~~ 215 (304)
T PRK07340 193 VTATTSRT----PVYPE---AARAGRLVVA 215 (304)
T ss_pred EEccCCCC----ceeCc---cCCCCCEEEe
Confidence 99999765 44543 3689987764
No 272
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.32 E-value=0.36 Score=38.31 Aligned_cols=67 Identities=19% Similarity=0.168 Sum_probs=46.4
Q ss_pred cchhHHHHHHHHHHcCce-eEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYK-VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~-V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|-+++.++..+...|.. |.+++|+.+..++..+.+.. .. -.+...+++.+.+.++|+||
T Consensus 20 aGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~------------~~-------~~~~~~~~~~~~~~~~DivI 80 (135)
T PF01488_consen 20 AGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG------------VN-------IEAIPLEDLEEALQEADIVI 80 (135)
T ss_dssp SSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG------------CS-------EEEEEGGGHCHHHHTESEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc------------cc-------cceeeHHHHHHHHhhCCeEE
Confidence 688999999999999986 99999999877655542200 00 00111345556788999999
Q ss_pred Eccccch
Q psy17416 201 ESVPEIL 207 (290)
Q Consensus 201 eavpe~~ 207 (290)
-|+|...
T Consensus 81 ~aT~~~~ 87 (135)
T PF01488_consen 81 NATPSGM 87 (135)
T ss_dssp E-SSTTS
T ss_pred EecCCCC
Confidence 9999664
No 273
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=91.30 E-value=1.8 Score=41.56 Aligned_cols=90 Identities=17% Similarity=0.095 Sum_probs=55.9
Q ss_pred chhHHHHHHHHHHc-------Cc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-CCchHhh
Q psy17416 123 GLIGQAWAMIFASA-------GY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-TPVLREC 192 (290)
Q Consensus 123 G~~g~~ia~~~~~~-------G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~l~~~ 192 (290)
|.+|..+|..++.. |. ++.++|++++.++.-.-.+++... ....++.+ +.+++ +
T Consensus 110 G~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~---------------~~~~~v~i~~~~ye-~ 173 (444)
T PLN00112 110 GMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY---------------PLLREVSIGIDPYE-V 173 (444)
T ss_pred cHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh---------------hhcCceEEecCCHH-H
Confidence 88999999998877 65 788999988876543333332211 01123443 34555 6
Q ss_pred cccCcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 193 LEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 193 l~~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
++|||+||.+.-- |..+-+++.++|.++..++++++
T Consensus 174 ~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivI 223 (444)
T PLN00112 174 FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVI 223 (444)
T ss_pred hCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 8999999976532 23345556667777555666554
No 274
>PRK05086 malate dehydrogenase; Provisional
Probab=91.29 E-value=0.53 Score=43.01 Aligned_cols=87 Identities=24% Similarity=0.192 Sum_probs=48.9
Q ss_pred chhHHHHHHHHHH---cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc--CCchHhhcccCc
Q psy17416 123 GLIGQAWAMIFAS---AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG--TPVLRECLEDAI 197 (290)
Q Consensus 123 G~~g~~ia~~~~~---~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~--~~~l~~~l~~aD 197 (290)
|.+|..++..+.. .++++.++|+++.....++. +. .. .....+.. .+++.++++++|
T Consensus 10 G~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alD-l~------------~~-----~~~~~i~~~~~~d~~~~l~~~D 71 (312)
T PRK05086 10 GGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVD-LS------------HI-----PTAVKIKGFSGEDPTPALEGAD 71 (312)
T ss_pred CHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehh-hh------------cC-----CCCceEEEeCCCCHHHHcCCCC
Confidence 7789999987744 34689999987532100111 00 00 00012222 356556789999
Q ss_pred EEEEcccc--------------chHHHHHHHHHHhhhCCCCcEE
Q psy17416 198 FIQESVPE--------------ILQIKHQVYRAIDIFMSSNTIL 227 (290)
Q Consensus 198 lVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii 227 (290)
+||.|.-. |..+-+++.+.+.++.+...++
T Consensus 72 iVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivi 115 (312)
T PRK05086 72 VVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIG 115 (312)
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 99988754 2224556666777774443333
No 275
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.28 E-value=0.88 Score=39.51 Aligned_cols=89 Identities=19% Similarity=0.242 Sum_probs=56.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh-cccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC-LEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~-l~~aDlVi 200 (290)
+|.+|..+|..|.+.|++|.++|.+++...+.... .++. . ...+ .-+-..-|.++ +.++|.++
T Consensus 8 ~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~---~-~v~g---------d~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 8 AGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDT---H-VVIG---------DATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred CcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcce---E-EEEe---------cCCCHHHHHhcCCCcCCEEE
Confidence 68999999999999999999999999987763330 0000 0 0000 00001223333 67899999
Q ss_pred EccccchHHHHHHHHHHhhh-CCCCcEEE
Q psy17416 201 ESVPEILQIKHQVYRAIDIF-MSSNTILS 228 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~-~~~~~ii~ 228 (290)
-++..+. ...++..+... +....+++
T Consensus 72 a~t~~d~--~N~i~~~la~~~~gv~~via 98 (225)
T COG0569 72 AATGNDE--VNSVLALLALKEFGVPRVIA 98 (225)
T ss_pred EeeCCCH--HHHHHHHHHHHhcCCCcEEE
Confidence 9998766 34555555533 55556666
No 276
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=91.23 E-value=0.8 Score=42.07 Aligned_cols=94 Identities=14% Similarity=0.047 Sum_probs=53.3
Q ss_pred chhHHHHHHHHHHcCc-------eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhccc
Q psy17416 123 GLIGQAWAMIFASAGY-------KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED 195 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~-------~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~ 195 (290)
|..|..+|..+...|. ++.++|.++.. +++........+ . ..+ ...+...+.+..+++++
T Consensus 13 G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~-~~a~g~a~Dl~~---------~-~~~--~~~~~~i~~~~~~~~~d 79 (323)
T TIGR01759 13 GQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAM-KALEGVAMELED---------C-AFP--LLAGVVATTDPEEAFKD 79 (323)
T ss_pred cHHHHHHHHHHHhCCcccCCCccEEEEEecCCcc-cccchHHHHHhh---------c-ccc--ccCCcEEecChHHHhCC
Confidence 8899999998888775 79999996521 111111111110 0 000 01112222333346899
Q ss_pred CcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 196 AIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 196 aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
||+||.+.-- |..+-+++..++.++.++++++..
T Consensus 80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiiv 127 (323)
T TIGR01759 80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLV 127 (323)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 9999965432 123456666788888875666553
No 277
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.20 E-value=3 Score=37.60 Aligned_cols=156 Identities=12% Similarity=0.093 Sum_probs=98.9
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-.-..+|+.. ..++++.|+++-.+ |-|+.--- +++.-.++......-..+=|+|++|-..+..= + .
T Consensus 62 i~~~~~~l~~~~t-~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~-~----~ 135 (284)
T PRK14193 62 ITSIRRDLPADAT-QEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKDADGLHPTNLGRLVLN-E----P 135 (284)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcccCccCCChhhhhHHhCC-C----C
Confidence 3444445566543 33677777777544 35666544 67778888888876677779999887653310 1 1
Q ss_pred CCCHHHHHHHHHHHHHh-----CCccEEEeccceeeEEecccchhHHHHHHHHHH--cCceeEEecCCHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEI-----GMKPVTLTTEIRGFALNRIHGLIGQAWAMIFAS--AGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~l-----gk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~--~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
.--|.|-..+.++++.. ||..++ ++| ....|+-++++|.+ .|..|++....
T Consensus 136 ~~~PcTp~av~~ll~~~~i~l~Gk~vvV---------iGr-S~~VGkPla~lL~~~~~~atVtvchs~------------ 193 (284)
T PRK14193 136 APLPCTPRGIVHLLRRYDVELAGAHVVV---------IGR-GVTVGRPIGLLLTRRSENATVTLCHTG------------ 193 (284)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEE---------ECC-CCcchHHHHHHHhhccCCCEEEEeCCC------------
Confidence 11233444445555554 444443 444 57788999999988 67888766431
Q ss_pred HHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 159 HTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.++.||+||-|+. |..+++ ...++++++++
T Consensus 194 ---------------------------T~~l~~~~k~ADIvV~AvG-----kp~~i~--~~~ik~GavVI 229 (284)
T PRK14193 194 ---------------------------TRDLAAHTRRADIIVAAAG-----VAHLVT--ADMVKPGAAVL 229 (284)
T ss_pred ---------------------------CCCHHHHHHhCCEEEEecC-----CcCccC--HHHcCCCCEEE
Confidence 3456667899999999998 444443 34577999887
No 278
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.06 E-value=2.3 Score=38.37 Aligned_cols=163 Identities=12% Similarity=0.093 Sum_probs=102.5
Q ss_pred cCcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC
Q psy17416 10 DAIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA 84 (290)
Q Consensus 10 ~~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~ 84 (290)
+.+......+|+.. ..++.+.|+++-.++ -|+.--- .++.-..+......-..+=|+|++|=..+.. ..
T Consensus 61 Gi~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~-----~~ 134 (284)
T PRK14190 61 GIYSELYEFPADIT-EEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGRMML-----GQ 134 (284)
T ss_pred CCEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccCHhhHHHHhc-----CC
Confidence 34555556677744 336788888775443 3555443 5777778888887666777999877543221 01
Q ss_pred CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHH
Q psy17416 85 AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 85 ~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~ 164 (290)
+.--|.|-.++.++++..|- + + +...-.+++| ....|+-++++|.+.|..|++....
T Consensus 135 ~~~~PcTp~av~~lL~~~~i-~--l-~Gk~vvViGr-S~iVG~Pla~lL~~~~atVt~chs~------------------ 191 (284)
T PRK14190 135 DTFLPCTPHGILELLKEYNI-D--I-SGKHVVVVGR-SNIVGKPVGQLLLNENATVTYCHSK------------------ 191 (284)
T ss_pred CCCCCCCHHHHHHHHHHcCC-C--C-CCCEEEEECC-CCccHHHHHHHHHHCCCEEEEEeCC------------------
Confidence 11234555666666666542 1 1 1222234555 6788999999999999999887421
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+.++.+.++.||+||-|+.-.- ++. .+.++++++++-
T Consensus 192 ---------------------t~~l~~~~~~ADIvI~AvG~p~-----~i~--~~~ik~gavVID 228 (284)
T PRK14190 192 ---------------------TKNLAELTKQADILIVAVGKPK-----LIT--ADMVKEGAVVID 228 (284)
T ss_pred ---------------------chhHHHHHHhCCEEEEecCCCC-----cCC--HHHcCCCCEEEE
Confidence 3455667889999999997333 332 334679998873
No 279
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.00 E-value=0.59 Score=42.13 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=45.7
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|-.+++++..+...|. +|.++|++++..+...+.+...+. . ..+....++.+.+.++|+||
T Consensus 135 aGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~----------~-------~~~~~~~~~~~~~~~aDiVI 197 (284)
T PRK12549 135 AGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFP----------A-------ARATAGSDLAAALAAADGLV 197 (284)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCC----------C-------eEEEeccchHhhhCCCCEEE
Confidence 67888999999998897 799999999877655443322110 0 01111234444678899999
Q ss_pred Eccccc
Q psy17416 201 ESVPEI 206 (290)
Q Consensus 201 eavpe~ 206 (290)
.|+|--
T Consensus 198 naTp~G 203 (284)
T PRK12549 198 HATPTG 203 (284)
T ss_pred ECCcCC
Confidence 998843
No 280
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.95 E-value=4.3 Score=36.61 Aligned_cols=160 Identities=13% Similarity=0.127 Sum_probs=91.9
Q ss_pred cCcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCce-eeeccCCCCCCCCeeeEee
Q psy17416 10 DAIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQF-IVAHPVNPPYFIPLVEIVP 83 (290)
Q Consensus 10 ~~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~-~g~hf~~P~~~~~lvEiv~ 83 (290)
+.+......+|+.. ..++.+.++++-..+ -|+.+-- ..+.-.++...+ .|++- =|+|..|-..+. .=+-..
T Consensus 62 Gi~~~~~~l~~~~~-~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~aKDVdg~n~~n~G~l~-~~~~~~ 138 (283)
T PRK14192 62 GMDSLKVELPQETT-TEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SLAKDVDGVTCLGFGRMA-MGEAAY 138 (283)
T ss_pred CCeEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CHHHhcCCCCccccCccc-cCCCcc
Confidence 45666667777765 445777777775553 3555433 333444577777 45444 478877622211 011123
Q ss_pred CCCCCHHHHHHHHHHHHH-hCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHH
Q psy17416 84 AAWTSERVITRTREIMTE-IGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQ 162 (290)
Q Consensus 84 ~~~t~~~~~~~~~~~~~~-lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~ 162 (290)
++.|+...++....+.-. -||..+ ++.| .|..|+.+++++...|..|+++++..
T Consensus 139 ~p~T~~gii~~L~~~~i~l~Gk~vv---------ViG~-gg~vGkpia~~L~~~gatVtv~~~~t--------------- 193 (283)
T PRK14192 139 GSATPAGIMRLLKAYNIELAGKHAV---------VVGR-SAILGKPMAMMLLNANATVTICHSRT--------------- 193 (283)
T ss_pred cCCcHHHHHHHHHHcCCCCCCCEEE---------EECC-cHHHHHHHHHHHHhCCCEEEEEeCCc---------------
Confidence 566774444433332212 234322 3333 35689999999999999999887621
Q ss_pred HHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 163 DYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 163 ~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.++.+.++++|+||-|++-.- ++. .+.+++++++.
T Consensus 194 ------------------------~~L~~~~~~aDIvI~AtG~~~-----~v~--~~~lk~gavVi 228 (283)
T PRK14192 194 ------------------------QNLPELVKQADIIVGAVGKPE-----LIK--KDWIKQGAVVV 228 (283)
T ss_pred ------------------------hhHHHHhccCCEEEEccCCCC-----cCC--HHHcCCCCEEE
Confidence 123334578999999995222 222 13478888876
No 281
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.85 E-value=3.6 Score=37.07 Aligned_cols=162 Identities=15% Similarity=0.085 Sum_probs=101.8
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+......+|+.. +.++++.|+++-.+ |-|+.--- +++.-..+......-..+=|+|++|=..+..= .+
T Consensus 63 i~~~~~~l~~~~s-~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g-----~~ 136 (284)
T PRK14177 63 MGSEMIRLKEQTT-TEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVTTLSFGKLSMG-----VE 136 (284)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccccCChhhHHHHHcC-----CC
Confidence 4445555677654 45788888877443 34565444 46667778888876677779998775543211 01
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~ 165 (290)
.--|.|-..+.++++..+- ++ ..-.-.+++| ....|+-++++|.+.|..|++....
T Consensus 137 ~~~PcTp~avi~ll~~y~i-~l---~Gk~vvViGr-S~iVGkPla~lL~~~~atVt~chs~------------------- 192 (284)
T PRK14177 137 TYLPCTPYGMVLLLKEYGI-DV---TGKNAVVVGR-SPILGKPMAMLLTEMNATVTLCHSK------------------- 192 (284)
T ss_pred CCCCCCHHHHHHHHHHhCC-CC---CCCEEEEECC-CCcchHHHHHHHHHCCCEEEEeCCC-------------------
Confidence 1123444455555555432 11 1112224445 5778999999999999999877521
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
|.++.+.+++||+||-|+. |..++. ...+++|++++-
T Consensus 193 --------------------T~~l~~~~~~ADIvIsAvG-----k~~~i~--~~~ik~gavVID 229 (284)
T PRK14177 193 --------------------TQNLPSIVRQADIIVGAVG-----KPEFIK--ADWISEGAVLLD 229 (284)
T ss_pred --------------------CCCHHHHHhhCCEEEEeCC-----CcCccC--HHHcCCCCEEEE
Confidence 3456667889999999998 555554 456789998873
No 282
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=90.81 E-value=0.23 Score=47.30 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=43.3
Q ss_pred CCcHHhhcccCcEEEEccc----------CChHHHH------------------------HHHHHHHhhcCCCcEE--ee
Q psy17416 1 TPVLRECLEDAIFIQESVP----------EILQIKH------------------------QVYRAIDIFMSSNTIL--SS 44 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~----------e~~~~K~------------------------~~~~~~~~~~~~~~i~--~s 44 (290)
|+|+++|+.|||+|+-++. |.+.+|. ++.+++.+.| ||+++ .|
T Consensus 66 t~d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~-Pda~lin~T 144 (419)
T cd05296 66 TTDRREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELA-PDAWLINFT 144 (419)
T ss_pred eCCHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 6899999999999998752 4444444 8888999998 56644 35
Q ss_pred cCCCCChHHHhcccCCCCceeeec
Q psy17416 45 STSSFLPSVLSEHSTHRSQFIVAH 68 (290)
Q Consensus 45 nts~~~~~~l~~~~~~~~r~~g~h 68 (290)
|-..+-...+.... +.|++|+-
T Consensus 145 NP~~ivt~a~~k~~--~~rviGlc 166 (419)
T cd05296 145 NPAGIVTEAVLRHT--GDRVIGLC 166 (419)
T ss_pred CHHHHHHHHHHHhc--cCCEEeeC
Confidence 55443222332222 67888875
No 283
>PRK05442 malate dehydrogenase; Provisional
Probab=90.26 E-value=0.81 Score=42.11 Aligned_cols=90 Identities=13% Similarity=0.034 Sum_probs=52.1
Q ss_pred chhHHHHHHHHHHcCc-------eeEEecCCHHH--HH-HHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 123 GLIGQAWAMIFASAGY-------KVSLYDVLSEQ--IE-NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~-------~V~l~d~~~e~--l~-~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
|..|..+|..+...|. ++.++|.++.. +. .+++ +.+.. .....+.+++.+..++
T Consensus 14 G~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~D-l~~~~---------------~~~~~~~~i~~~~y~~ 77 (326)
T PRK05442 14 GQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVME-LDDCA---------------FPLLAGVVITDDPNVA 77 (326)
T ss_pred cHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehh-hhhhh---------------hhhcCCcEEecChHHH
Confidence 8899999988877664 79999996531 11 1111 11110 0011122233344446
Q ss_pred cccCcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 193 LEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 193 l~~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
++|||+||.+.-- |..+-+++..+|.++.++++++.
T Consensus 78 ~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iii 127 (326)
T PRK05442 78 FKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVL 127 (326)
T ss_pred hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 8999999965431 22345666677888776666655
No 284
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=90.21 E-value=1.5 Score=40.34 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=54.8
Q ss_pred cchhHHHHHHHHH-HcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFA-SAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~-~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
.|.+++..+..+. ..+. +|.+|+++++..++..+++...+ | -.+...+++++++++||+|
T Consensus 137 aG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g------------~~v~~~~~~~~av~~aDiV 198 (326)
T TIGR02992 137 AGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G------------IDVTAATDPRAAMSGADII 198 (326)
T ss_pred CCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C------------ceEEEeCCHHHHhccCCEE
Confidence 5777777776665 3564 69999999998776655443211 1 0122357788889999999
Q ss_pred EEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+-|+|... .++. .+.+++++.+.
T Consensus 199 vtaT~s~~----p~i~--~~~l~~g~~i~ 221 (326)
T TIGR02992 199 VTTTPSET----PILH--AEWLEPGQHVT 221 (326)
T ss_pred EEecCCCC----cEec--HHHcCCCcEEE
Confidence 99999754 3332 12467887665
No 285
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=90.13 E-value=0.17 Score=37.57 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=28.8
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||++||++..+.++.+.++.+.. .+++++|+++.
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egv-------as~~~ID~~~~ 34 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGV-------ASPEDIDRAMR 34 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTS-------SSHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcC-------CCHHHHHHHHH
Confidence 79999999999999877776543 68999999887
No 286
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=89.92 E-value=1.2 Score=38.47 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=71.3
Q ss_pred cccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhcc---CCC-CCcEEEeccCCCC
Q psy17416 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH---STH-RSQFIVAHPVNPP 258 (290)
Q Consensus 183 i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~---~~~-~~r~ig~Hf~~p~ 258 (290)
+..++|-.+++.++|+||-=.|-- .....+++++..-.++++|+ +++-+++.+.+..- ..+ .-++-..||-.-|
T Consensus 127 ~~vttddreavedad~iitwlpkg-~~qpdiikkfiddipegaiv-thactipttkf~kifed~gredlnvtsyhpg~vp 204 (343)
T COG4074 127 IVVTTDDREAVEDADMIITWLPKG-GVQPDIIKKFIDDIPEGAIV-THACTIPTTKFKKIFEDMGREDLNVTSYHPGTVP 204 (343)
T ss_pred eEEecCcHhhhcCCCeEEEeccCC-CCCccHHHHHHhcCCCCceE-eeecccchHHHHHHHHHhCccccceeccCCCCCc
Confidence 555677777999999999888732 23456788888889999987 67778887765543 333 2356677876655
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHc
Q psy17416 259 YFIPLVEIVPAAWTSERVITRTREIMTEI 287 (290)
Q Consensus 259 ~~~~lvEvv~~~~t~~e~~~~~~~~~~~l 287 (290)
....-|-|-. ...|+|++..+.++.+.-
T Consensus 205 emkgqvyiae-gyaseeavn~lyelg~ka 232 (343)
T COG4074 205 EMKGQVYIAE-GYASEEAVNALYELGEKA 232 (343)
T ss_pred cccCcEEEec-ccccHHHHHHHHHHHHHh
Confidence 4444444444 477999999998887653
No 287
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.87 E-value=5.3 Score=35.94 Aligned_cols=160 Identities=11% Similarity=0.123 Sum_probs=102.0
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-+-..||+.. ..++++.|+++-.++ -|+.--- .++.-.++......-..+=|+|++|=..+. .+.
T Consensus 60 i~~~~~~l~~~~t-~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~------~g~ 132 (282)
T PRK14182 60 ITSVEHHLPATTT-QAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALS------IGI 132 (282)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcCCCCHhHHHHHh------CCC
Confidence 4444555667754 456888888775543 4555433 577778888888766777799988855422 111
Q ss_pred C--CCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHH
Q psy17416 86 W--TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQD 163 (290)
Q Consensus 86 ~--t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~ 163 (290)
. --|.|-..+.++++..+- . + ....-.+++| ....|+-++++|.+.|..|+....
T Consensus 133 ~~~~~PcTp~avi~ll~~~~i-~--l-~Gk~vvViGr-S~iVGkPla~lL~~~~AtVtichs------------------ 189 (282)
T PRK14182 133 AGVPRPCTPAGVMRMLDEARV-D--P-KGKRALVVGR-SNIVGKPMAMMLLERHATVTIAHS------------------ 189 (282)
T ss_pred CCCCCCCCHHHHHHHHHHhCC-C--C-CCCEEEEECC-CCcchHHHHHHHHHCCCEEEEeCC------------------
Confidence 1 124455555666666542 1 1 1222234555 577899999999999988887632
Q ss_pred HHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 164 YHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 164 ~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.|.++.+.++.||+||-|+.- ..++. .+.++++++++
T Consensus 190 ---------------------~T~nl~~~~~~ADIvI~AvGk-----~~~i~--~~~ik~gaiVI 226 (282)
T PRK14182 190 ---------------------RTADLAGEVGRADILVAAIGK-----AELVK--GAWVKEGAVVI 226 (282)
T ss_pred ---------------------CCCCHHHHHhhCCEEEEecCC-----cCccC--HHHcCCCCEEE
Confidence 134566678899999999983 33433 34577999887
No 288
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=89.76 E-value=1 Score=41.09 Aligned_cols=93 Identities=20% Similarity=0.294 Sum_probs=54.2
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|...|+.+...++ ++.++|++++....-...+.+. ........++..+.+++ +++++|+|
T Consensus 8 aG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~-------------~~~~~~~~~i~~~~~y~-~~~~aDiV 73 (313)
T COG0039 8 AGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHA-------------AAPLGSDVKITGDGDYE-DLKGADIV 73 (313)
T ss_pred CChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhc-------------chhccCceEEecCCChh-hhcCCCEE
Confidence 48889999988876654 7999999943322111111110 00001112333334465 58999999
Q ss_pred EEcc--cc------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESV--PE------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieav--pe------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+.+. |. |..+.+++-+++.+.++...+++
T Consensus 74 vitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlV 116 (313)
T COG0039 74 VITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLV 116 (313)
T ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEE
Confidence 9877 32 33466667778888887554444
No 289
>KOG0069|consensus
Probab=89.55 E-value=1.9 Score=39.76 Aligned_cols=136 Identities=17% Similarity=0.105 Sum_probs=82.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|..+|..+...|..+.-+.+.+...+.+.++ +. -..|+++.+.++|+|+.
T Consensus 170 ~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~---------------~~-----------~~~d~~~~~~~sD~ivv 223 (336)
T KOG0069|consen 170 LGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEY---------------YA-----------EFVDIEELLANSDVIVV 223 (336)
T ss_pred CcHHHHHHHHhhhhccceeeeecccCCchhhHHHh---------------cc-----------cccCHHHHHhhCCEEEE
Confidence 68999999999988883344444444333332220 00 03467778899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCC-CCCcEEEeccCC-------CCCCCCeEEEecCC-
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHST-HRSQFIVAHPVN-------PPYFIPLVEIVPAA- 270 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~-~~~r~ig~Hf~~-------p~~~~~lvEvv~~~- 270 (290)
|.|-+.....-+=+++-..++++++|+...-+--+. ++.+.+. .+-.=.|+--|. |-..+..+-++|+-
T Consensus 224 ~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHig 303 (336)
T KOG0069|consen 224 NCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIG 303 (336)
T ss_pred ecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccc
Confidence 999999887777788999999999998655554444 4444432 111111221121 22233456677763
Q ss_pred CCCHHHHHHHHHH
Q psy17416 271 WTSERVITRTREI 283 (290)
Q Consensus 271 ~t~~e~~~~~~~~ 283 (290)
.++.++..+...+
T Consensus 304 s~t~~t~~~m~~~ 316 (336)
T KOG0069|consen 304 SATLETREKMAEI 316 (336)
T ss_pred cCcHHHHHHHHHH
Confidence 4556665555443
No 290
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.47 E-value=5.7 Score=35.85 Aligned_cols=161 Identities=13% Similarity=0.108 Sum_probs=99.4
Q ss_pred cEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCCC
Q psy17416 12 IFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAW 86 (290)
Q Consensus 12 d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~~ 86 (290)
+.-....+|+.. +.++++.|+++-.++ -|+.--- .++.-.++.....--..+=|+|++|...+..= .+.
T Consensus 69 ~~~~~~l~~~~~-~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g-----~~~ 142 (287)
T PRK14176 69 RAEDQFLPADTT-QEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNMGKLMIG-----DEG 142 (287)
T ss_pred EEEEEECCCCCC-HHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCccccccccChhhhhhHhcC-----CCC
Confidence 333445566644 457888887775443 5666544 46677788888876677779999887654311 111
Q ss_pred CCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHH
Q psy17416 87 TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQ 166 (290)
Q Consensus 87 t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~ 166 (290)
--|.|-..+.++++..+- + + ....-.+++| ....|+-++.+|.+.|..|++....
T Consensus 143 ~~PcTp~av~~ll~~~~i-~--l-~Gk~vvViGr-s~iVGkPla~lL~~~~atVtv~hs~-------------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGV-D--I-EGKNAVIVGH-SNVVGKPMAAMLLNRNATVSVCHVF-------------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCC-C--C-CCCEEEEECC-CcccHHHHHHHHHHCCCEEEEEecc--------------------
Confidence 224444555555555432 1 1 1112234444 4667899999999999999887721
Q ss_pred cCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 167 KGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 167 ~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
|.++.+.+++||+||-|+-- ..++. ...++++++++-
T Consensus 198 -------------------T~~l~~~~~~ADIvv~AvG~-----p~~i~--~~~vk~gavVID 234 (287)
T PRK14176 198 -------------------TDDLKKYTLDADILVVATGV-----KHLIK--ADMVKEGAVIFD 234 (287)
T ss_pred -------------------CCCHHHHHhhCCEEEEccCC-----ccccC--HHHcCCCcEEEE
Confidence 34556668899999987762 23332 236789998873
No 291
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=89.44 E-value=0.5 Score=36.95 Aligned_cols=99 Identities=18% Similarity=0.182 Sum_probs=56.1
Q ss_pred cccchhHHHHHHHHHH-cCcee-EEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCc
Q psy17416 120 RIHGLIGQAWAMIFAS-AGYKV-SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAI 197 (290)
Q Consensus 120 ri~G~~g~~ia~~~~~-~G~~V-~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aD 197 (290)
-..|.||+.++..+.+ .|+++ -.+|+++..... +.+.. + .|.. ...+..++++++.+..+|
T Consensus 7 G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g~----~--~~~~---------~~~~~v~~~l~~~~~~~D 69 (124)
T PF01113_consen 7 GASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVGE----L--AGIG---------PLGVPVTDDLEELLEEAD 69 (124)
T ss_dssp TTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCHH----H--CTSS---------T-SSBEBS-HHHHTTH-S
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhhh----h--hCcC---------CcccccchhHHHhcccCC
Confidence 3358999999998887 68875 456776621100 00000 0 0000 134455789999999999
Q ss_pred EEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHh
Q psy17416 198 FIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS 240 (290)
Q Consensus 198 lVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la 240 (290)
++|+... .+. +...+...+..+..+++.|+++.-+++.
T Consensus 70 VvIDfT~--p~~---~~~~~~~~~~~g~~~ViGTTG~~~~~~~ 107 (124)
T PF01113_consen 70 VVIDFTN--PDA---VYDNLEYALKHGVPLVIGTTGFSDEQID 107 (124)
T ss_dssp EEEEES---HHH---HHHHHHHHHHHT-EEEEE-SSSHHHHHH
T ss_pred EEEEcCC--hHH---hHHHHHHHHhCCCCEEEECCCCCHHHHH
Confidence 9999873 332 3333444444578888889888765443
No 292
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.38 E-value=0.84 Score=41.68 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=50.4
Q ss_pred chhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc---CCchHhhcccCc
Q psy17416 123 GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG---TPVLRECLEDAI 197 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~---~~~l~~~l~~aD 197 (290)
|..|..+|..+...|. ++.++|.+ ...-.++. +.+ . . ..-.+.. ++++.+++++||
T Consensus 10 G~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alD-L~~------------~-~----~~~~i~~~~~~~~~y~~~~daD 70 (310)
T cd01337 10 GGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAAD-LSH------------I-N----TPAKVTGYLGPEELKKALKGAD 70 (310)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehH-hHh------------C-C----CcceEEEecCCCchHHhcCCCC
Confidence 8899999999988885 79999998 11111111 000 0 0 0113332 234445699999
Q ss_pred EEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 198 FIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 198 lVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+||.+.-- |..+-+++.+++.++.+ ++++.
T Consensus 71 ivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p-~a~vi 114 (310)
T cd01337 71 VVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACP-KALIL 114 (310)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 99976532 23345556667777754 55554
No 293
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=89.33 E-value=2.4 Score=36.40 Aligned_cols=102 Identities=13% Similarity=0.077 Sum_probs=62.7
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCCh-----------------HHHhcccCCCCcee
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-----------------SVLSEHSTHRSQFI 65 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~-----------------~~l~~~~~~~~r~~ 65 (290)
+..++++++|+||=|++-.. =.++++++....+. .++.+.+-.++. ..+++.+....|++
T Consensus 61 ~~~ea~~~aDvVilavp~~~--~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VV 137 (219)
T TIGR01915 61 DNAEAAKRADVVILAVPWDH--VLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVV 137 (219)
T ss_pred ChHHHHhcCCEEEEECCHHH--HHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEe
Confidence 55678899999999997442 24555666655554 666666655554 34666664326766
Q ss_pred eeccCCCCCCC-------CeeeEeeCCCCCHHHHHHHHHHHHHh-CCccEEE
Q psy17416 66 VAHPVNPPYFI-------PLVEIVPAAWTSERVITRTREIMTEI-GMKPVTL 109 (290)
Q Consensus 66 g~hf~~P~~~~-------~lvEiv~~~~t~~~~~~~~~~~~~~l-gk~~v~v 109 (290)
..=.+.|+... ..--.+.| -+++..+.+.++.+.+ |..|+-+
T Consensus 138 ka~~~~~a~~~~~~~~~~~~~~~v~G--dd~~ak~~v~~L~~~~~G~~~vd~ 187 (219)
T TIGR01915 138 AAFHNLSAVLLQDVDDEVDCDVLVCG--DDEEAKEVVAELAGRIDGLRALDA 187 (219)
T ss_pred eccccCCHHHhcCCCCCCCCCEEEEC--CCHHHHHHHHHHHHhcCCCCcccC
Confidence 55333332211 11112333 2567888899999999 9998754
No 294
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=89.24 E-value=4.5 Score=35.19 Aligned_cols=86 Identities=14% Similarity=0.182 Sum_probs=54.3
Q ss_pred cchhHHHHHHHHHHc--Cc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASA--GY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~--G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
.|.+|..+...+... .+ .+.+||++.+....+.+.+ .....+++++.+.+.|+
T Consensus 8 cGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~------------------------~~~~~s~ide~~~~~Dl 63 (255)
T COG1712 8 CGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV------------------------GRRCVSDIDELIAEVDL 63 (255)
T ss_pred ccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc------------------------CCCccccHHHHhhccce
Confidence 688999987777654 24 4678999998765544410 01124788887899999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL 235 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 235 (290)
++||.. .+.-++..-++.+ ..-++|+. +++.+.
T Consensus 64 vVEaAS--~~Av~e~~~~~L~-~g~d~iV~-SVGALa 96 (255)
T COG1712 64 VVEAAS--PEAVREYVPKILK-AGIDVIVM-SVGALA 96 (255)
T ss_pred eeeeCC--HHHHHHHhHHHHh-cCCCEEEE-echhcc
Confidence 999987 3334444433332 13456664 566666
No 295
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=89.18 E-value=0.57 Score=44.73 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=42.0
Q ss_pred CCcHHhhcccCcEEEEccc----------CChHHHH------------------------HHHHHHHhhcCCCcEEe--e
Q psy17416 1 TPVLRECLEDAIFIQESVP----------EILQIKH------------------------QVYRAIDIFMSSNTILS--S 44 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~----------e~~~~K~------------------------~~~~~~~~~~~~~~i~~--s 44 (290)
|+|+++|++|||+||-++. |++.+|. ++.+++.++| ||+++- |
T Consensus 65 ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~T 143 (425)
T cd05197 65 TMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFT 143 (425)
T ss_pred eCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecC
Confidence 6899999999999998763 4555565 8888888888 555443 4
Q ss_pred cCCCCChHHHhcccC---CCCceeeec
Q psy17416 45 STSSFLPSVLSEHST---HRSQFIVAH 68 (290)
Q Consensus 45 nts~~~~~~l~~~~~---~~~r~~g~h 68 (290)
| |+.-+...+. .+.|++|+-
T Consensus 144 N----P~di~t~a~~~~~p~~rviG~c 166 (425)
T cd05197 144 N----PAGEVTEAVRRYVPPEKAVGLC 166 (425)
T ss_pred C----hHHHHHHHHHHhCCCCcEEEEC
Confidence 4 4444433331 135666664
No 296
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.15 E-value=3.1 Score=31.45 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=53.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCC--CCCCChhhhhcccccCCchHh-hcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCL--KGSLSPEEQFGLISGTPVLRE-CLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~--~~~~~~~~~~~~i~~~~~l~~-~l~~aDl 198 (290)
+|.+|..++..+...+.+|.++|.+++..+++.+ .|.. .+..... ..+.+ .+.+++.
T Consensus 6 ~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-----------~~~~~i~gd~~~~---------~~l~~a~i~~a~~ 65 (116)
T PF02254_consen 6 YGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-----------EGVEVIYGDATDP---------EVLERAGIEKADA 65 (116)
T ss_dssp -SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-----------TTSEEEES-TTSH---------HHHHHTTGGCESE
T ss_pred CCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-----------cccccccccchhh---------hHHhhcCccccCE
Confidence 5788999999999977799999999998877665 2211 1111101 11221 3578999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
++-+.+.+.. ...+...+.+..+.-.+++
T Consensus 66 vv~~~~~d~~-n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 66 VVILTDDDEE-NLLIALLARELNPDIRIIA 94 (116)
T ss_dssp EEEESSSHHH-HHHHHHHHHHHTTTSEEEE
T ss_pred EEEccCCHHH-HHHHHHHHHHHCCCCeEEE
Confidence 9988886642 2333344444444455555
No 297
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=89.12 E-value=0.19 Score=42.21 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=42.8
Q ss_pred CCcHHhhcccCcEEEEcc--------------cCChHHH----------------------HHHHHHHHhhcCCCcEEee
Q psy17416 1 TPVLRECLEDAIFIQESV--------------PEILQIK----------------------HQVYRAIDIFMSSNTILSS 44 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~--------------~e~~~~K----------------------~~~~~~~~~~~~~~~i~~s 44 (290)
|+|++||++|||+||-++ |.+..+. .++.++++++| ||+-+-
T Consensus 64 ttd~~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~-PdAw~i- 141 (183)
T PF02056_consen 64 TTDRREALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELC-PDAWLI- 141 (183)
T ss_dssp ESSHHHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSEEE-
T ss_pred eCCHHHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhC-CCcEEE-
Confidence 689999999999999764 3333333 37788999998 566443
Q ss_pred cCCCCChHHHhcccC--CC-Cceeeec
Q psy17416 45 STSSFLPSVLSEHST--HR-SQFIVAH 68 (290)
Q Consensus 45 nts~~~~~~l~~~~~--~~-~r~~g~h 68 (290)
|.+| |.+.+..++. .| .|++|+.
T Consensus 142 NytN-P~~~vt~a~~r~~~~~k~vGlC 167 (183)
T PF02056_consen 142 NYTN-PMGIVTEALSRYTPKIKVVGLC 167 (183)
T ss_dssp E-SS-SHHHHHHHHHHHSTTSEEEEE-
T ss_pred eccC-hHHHHHHHHHHhCCCCCEEEEC
Confidence 3323 6666666554 35 8888875
No 298
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.07 E-value=0.71 Score=42.41 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=51.8
Q ss_pred cchhHHHHHHHHHHcCc-------eeEEecCCH--HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 122 HGLIGQAWAMIFASAGY-------KVSLYDVLS--EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-------~V~l~d~~~--e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.|.+|..++..+...|+ ++.++|+++ +.++.-...+.+. .. ......+.+.+..++
T Consensus 9 aG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~-------------~~--~~~~~~~i~~~~~~~ 73 (323)
T cd00704 9 AGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDC-------------AF--PLLKGVVITTDPEEA 73 (323)
T ss_pred CcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhh-------------cc--cccCCcEEecChHHH
Confidence 38899999998887653 599999986 3211100000000 00 011112233444557
Q ss_pred cccCcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 193 LEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 193 l~~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+++||+||.+.-. |..+-+++..++.++++++++++
T Consensus 74 ~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iii 123 (323)
T cd00704 74 FKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVL 123 (323)
T ss_pred hCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEE
Confidence 9999999965322 33345666677888875555544
No 299
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=89.06 E-value=5.6 Score=36.41 Aligned_cols=101 Identities=11% Similarity=0.128 Sum_probs=75.0
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCC-------
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF------- 75 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~------- 75 (290)
++++++++||+|+=++|..-. ...+++++....+++. +.|-..++++..+....+...+++-+=+--|...
T Consensus 52 s~~ea~~~ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~ 129 (314)
T TIGR00465 52 TVEEAIPQADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKE 129 (314)
T ss_pred CHHHHHhcCCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhc
Confidence 577889999999999996533 4466777877777786 5677778999998887754456777777777763
Q ss_pred C-CeeeEe-eCCCCCHHHHHHHHHHHHHhCCc
Q psy17416 76 I-PLVEIV-PAAWTSERVITRTREIMTEIGMK 105 (290)
Q Consensus 76 ~-~lvEiv-~~~~t~~~~~~~~~~~~~~lgk~ 105 (290)
- -.-=++ .+...+.+..+.+..++..+|..
T Consensus 130 G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 130 GFGVPTLIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred CCCeeEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 1 111232 56667788899999999999997
No 300
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.03 E-value=0.94 Score=42.60 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=51.4
Q ss_pred cchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|..|+.+|..+++.| .+|++.|++++..+++....... ++. ..-.+.-...+.+++++.|+||
T Consensus 9 aG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~-------------v~~--~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 9 AGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGK-------------VEA--LQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcccc-------------cee--EEecccChHHHHHHHhcCCEEE
Confidence 5888999999999988 99999999999988876632110 000 0000111234566889999999
Q ss_pred EccccchHH
Q psy17416 201 ESVPEILQI 209 (290)
Q Consensus 201 eavpe~~~~ 209 (290)
.|+|-.+..
T Consensus 74 n~~p~~~~~ 82 (389)
T COG1748 74 NAAPPFVDL 82 (389)
T ss_pred EeCCchhhH
Confidence 999977754
No 301
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=89.00 E-value=1.5 Score=39.87 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=55.4
Q ss_pred eeeEEecccchhHHHHHHHHHH-cC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~-~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|.++ .|..++.-+..+.. .. -+|.+|+++++..++..++++..+ | -.+....+.++
T Consensus 120 l~iiG---aG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~------------~~v~~~~~~~e 178 (301)
T PRK06407 120 FTIIG---SGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G------------VDIRPVDNAEA 178 (301)
T ss_pred EEEEC---CcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C------------CcEEEeCCHHH
Confidence 35555 45555543333332 23 479999999998877666544321 1 12334678999
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
++.+||+|+-|++..- .++. .+.+++++.|..
T Consensus 179 av~~aDIV~taT~s~~----P~~~--~~~l~pg~hV~a 210 (301)
T PRK06407 179 ALRDADTITSITNSDT----PIFN--RKYLGDEYHVNL 210 (301)
T ss_pred HHhcCCEEEEecCCCC----cEec--HHHcCCCceEEe
Confidence 9999999999999665 4442 224567776653
No 302
>KOG3124|consensus
Probab=88.97 E-value=6.4 Score=34.82 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=73.1
Q ss_pred CchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEE-
Q psy17416 187 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE- 265 (290)
Q Consensus 187 ~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvE- 265 (290)
++ .+.++.+|+++.++-... -..++.++...+..+-|+.|-.-+..++.+...+..+.|++-.=+--|..+....-
T Consensus 54 ~n-~~~~~~s~v~~~svKp~~--i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv 130 (267)
T KOG3124|consen 54 TN-LEVLQASDVVFLSVKPQV--IESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASV 130 (267)
T ss_pred ch-HHHHhhccceeEeecchh--HHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEE
Confidence 44 557889999999986333 44666666665666778889888888988888887667777777766665554444
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 266 IVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 266 vv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
...+.....+-.+.+.+++...|+
T Consensus 131 ~~~g~~~~~~D~~l~~~ll~~vG~ 154 (267)
T KOG3124|consen 131 YAIGCHATNEDLELVEELLSAVGL 154 (267)
T ss_pred EeeCCCcchhhHHHHHHHHHhcCc
Confidence 455667777777899999998886
No 303
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=88.94 E-value=1.3 Score=40.65 Aligned_cols=95 Identities=14% Similarity=0.051 Sum_probs=51.4
Q ss_pred cchhHHHHHHHHHHcCc-------eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASAGY-------KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-------~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
+|..|..++..+...|+ ++.++|+++.. +++....... .+. . ......+..+++..++++
T Consensus 8 aG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~-~~a~g~~~Dl---------~d~--~-~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 8 AGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAM-KVLEGVVMEL---------MDC--A-FPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CcHHHHHHHHHHHhccccCCCCccEEEEEecCCcc-cccceeEeeh---------hcc--c-chhcCceeccCChHHHhC
Confidence 38899999998887554 59999986542 1111100000 000 0 011123333435345689
Q ss_pred cCcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 195 DAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 195 ~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+||+||.+.-. |..+-+++..++.+..++++++..
T Consensus 75 ~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiiv 123 (324)
T TIGR01758 75 DVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLV 123 (324)
T ss_pred CCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 99999965432 122345555677777656665553
No 304
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=88.92 E-value=6.2 Score=36.73 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=98.5
Q ss_pred EEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC--CCC
Q psy17416 15 QESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA--AWT 87 (290)
Q Consensus 15 iea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~--~~t 87 (290)
.-..+|+.. ..++++.|+++-.+ |-|+.--- .++.-.++...+..-..+=|+|++|-..+.. .+ +.-
T Consensus 137 ~~~lpe~~t-e~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~KDVDGl~p~N~G~L~~-----g~~~~~f 210 (364)
T PLN02616 137 EVRLPEDST-EQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAM-----RGREPLF 210 (364)
T ss_pred EEECCCCCC-HHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhc-----CCCCCCC
Confidence 334567653 33777788777544 35666544 5777778888887667788999988665321 11 111
Q ss_pred CHHHHHHHHHHHHHh-----CCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHH
Q psy17416 88 SERVITRTREIMTEI-----GMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQ 162 (290)
Q Consensus 88 ~~~~~~~~~~~~~~l-----gk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~ 162 (290)
-|.|-..+.++++.. ||..++ ++| ....|+-++++|.+.|..|++...
T Consensus 211 ~PCTp~avielL~~y~i~l~GK~vvV---------IGR-S~iVGkPLa~LL~~~~ATVTicHs----------------- 263 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKGKRAVV---------IGR-SNIVGMPAALLLQREDATVSIVHS----------------- 263 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEE---------ECC-CccccHHHHHHHHHCCCeEEEeCC-----------------
Confidence 233344455555554 444443 444 567789999999999999987631
Q ss_pred HHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 163 DYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 163 ~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
-|.++.+.+++||+||-|+. |..++. .+.+++|++++
T Consensus 264 ----------------------~T~nl~~~~r~ADIVIsAvG-----kp~~i~--~d~vK~GAvVI 300 (364)
T PLN02616 264 ----------------------RTKNPEEITREADIIISAVG-----QPNMVR--GSWIKPGAVVI 300 (364)
T ss_pred ----------------------CCCCHHHHHhhCCEEEEcCC-----CcCcCC--HHHcCCCCEEE
Confidence 13466667899999999998 334433 34577999887
No 305
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=88.85 E-value=1.2 Score=39.64 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=28.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.|.+|+.++..++..|++|.+++++++..++..+
T Consensus 125 aGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~ 158 (270)
T TIGR00507 125 AGGAARAVALPLLKADCNVIIANRTVSKAEELAE 158 (270)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5788999999999999999999999887655444
No 306
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=88.79 E-value=5.4 Score=36.87 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=100.5
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC-
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA- 84 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~- 84 (290)
.+...-..+|+.. +.++++.|+++-.++ -|+.--- +++.-.++...+.--..+=|+|++|-..+.. ++
T Consensus 116 I~~~~~~l~~~~t-e~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDGl~p~N~G~L~~-----~~~ 189 (345)
T PLN02897 116 IKSLLAELPEDCT-EGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAM-----RGR 189 (345)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCccCCCHHHHHHHhc-----CCC
Confidence 3444455666653 336777777775443 4666544 6777888888887667777999888665321 11
Q ss_pred -CCCCHHHHHHHHHHHHHh-----CCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 85 -AWTSERVITRTREIMTEI-----GMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 85 -~~t~~~~~~~~~~~~~~l-----gk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
+.--|.|-..+.+++++. ||..++ ++| ....|+-++++|.+.|..|++...
T Consensus 190 ~~~~~PCTp~avi~LL~~~~i~l~GK~vvV---------IGR-S~iVGkPla~LL~~~~ATVTicHs------------- 246 (345)
T PLN02897 190 EPLFVSCTPKGCVELLIRSGVEIAGKNAVV---------IGR-SNIVGLPMSLLLQRHDATVSTVHA------------- 246 (345)
T ss_pred CCCCcCCCHHHHHHHHHHhCCCCCCCEEEE---------ECC-CccccHHHHHHHHHCCCEEEEEcC-------------
Confidence 112244555555556654 454444 444 567789999999999988876642
Q ss_pred HHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 159 HTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.|.++.+.+++||+||-|+. |..++. .+.+++|++++
T Consensus 247 --------------------------~T~nl~~~~~~ADIvIsAvG-----kp~~v~--~d~vk~GavVI 283 (345)
T PLN02897 247 --------------------------FTKDPEQITRKADIVIAAAG-----IPNLVR--GSWLKPGAVVI 283 (345)
T ss_pred --------------------------CCCCHHHHHhhCCEEEEccC-----CcCccC--HHHcCCCCEEE
Confidence 13455667889999999998 334433 34577999887
No 307
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.69 E-value=0.54 Score=38.28 Aligned_cols=47 Identities=32% Similarity=0.440 Sum_probs=37.6
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF 49 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~ 49 (290)
|+|+++++++||+|+=++|=.- =++++++|..+.+++.++.+.+=++
T Consensus 60 t~dl~~a~~~ad~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 60 TTDLEEALEDADIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp ESSHHHHHTT-SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred ccCHHHHhCcccEEEecccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence 5899999999999999998766 3799999999999999999988776
No 308
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.46 E-value=1.1 Score=41.13 Aligned_cols=93 Identities=14% Similarity=0.018 Sum_probs=52.2
Q ss_pred chhHHHHHHHHHHcCc-------eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhccc
Q psy17416 123 GLIGQAWAMIFASAGY-------KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED 195 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~-------~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~ 195 (290)
|.+|..+|..+...|. ++.++|.+++. +++........+ . . .....+++++++..++++|
T Consensus 12 G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~-~~a~g~a~Dl~~---------~--~-~~~~~~~~i~~~~~~~~~d 78 (322)
T cd01338 12 GQIGYSLLFRIASGEMFGPDQPVILQLLELPQAL-KALEGVAMELED---------C--A-FPLLAEIVITDDPNVAFKD 78 (322)
T ss_pred cHHHHHHHHHHHhccccCCCCceEEEEEecCCcc-cccceeehhhhh---------c--c-ccccCceEEecCcHHHhCC
Confidence 8899999999888776 79999996432 111110000000 0 0 0011122233333346999
Q ss_pred CcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 196 AIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 196 aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
||+||.+.-- |..+-+++..+|.++.+++++++
T Consensus 79 aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iii 125 (322)
T cd01338 79 ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVL 125 (322)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 9999976432 23345666677888886555554
No 309
>PTZ00325 malate dehydrogenase; Provisional
Probab=88.41 E-value=1.1 Score=41.17 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=20.1
Q ss_pred cchhHHHHHHHHHHcC--ceeEEecC
Q psy17416 122 HGLIGQAWAMIFASAG--YKVSLYDV 145 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G--~~V~l~d~ 145 (290)
+|.+|..++..+...| .++.++|+
T Consensus 17 aG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 17 AGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 4899999999888555 58999999
No 310
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.39 E-value=6.5 Score=35.58 Aligned_cols=161 Identities=9% Similarity=0.071 Sum_probs=101.7
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-....+|+.. ..++++.|+++-.++ -|+.--- +++.-.++......-..+=|+|++|=..+.. ..+
T Consensus 61 i~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~-----~~~ 134 (293)
T PRK14185 61 FKSSLIRYESDVT-EEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGFHPINVGRMSI-----GLP 134 (293)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcCCCCHhhHHHHhC-----CCC
Confidence 4444556777764 457888888775443 4666544 6777888888888777788999887554321 111
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHc----CceeEEecCCHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASA----GYKVSLYDVLSEQIENAKNTIQHTL 161 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~----G~~V~l~d~~~e~l~~a~~~i~~~~ 161 (290)
.--|.|-..+.++++..+- + + ..-.-.+++| ....|+-++++|.+. +..|++...
T Consensus 135 ~~~PcTp~av~~lL~~~~i-~--l-~GK~vvViGr-S~iVGkPla~lL~~~~~~~~aTVtvchs---------------- 193 (293)
T PRK14185 135 CFVSATPNGILELLKRYHI-E--T-SGKKCVVLGR-SNIVGKPMAQLMMQKAYPGDCTVTVCHS---------------- 193 (293)
T ss_pred CCCCCCHHHHHHHHHHhCC-C--C-CCCEEEEECC-CccchHHHHHHHHcCCCCCCCEEEEecC----------------
Confidence 1234455555666665442 1 1 1112234445 567789999999887 456665431
Q ss_pred HHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 162 QDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 162 ~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
-|.++.+.++.||+||-|+. |..++. .+.+++|++++
T Consensus 194 -----------------------~T~nl~~~~~~ADIvIsAvG-----kp~~i~--~~~vk~gavVI 230 (293)
T PRK14185 194 -----------------------RSKNLKKECLEADIIIAALG-----QPEFVK--ADMVKEGAVVI 230 (293)
T ss_pred -----------------------CCCCHHHHHhhCCEEEEccC-----CcCccC--HHHcCCCCEEE
Confidence 13456667889999999998 445554 35678999887
No 311
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.15 E-value=1 Score=41.19 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=60.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCC-----hHHHhcccCC--CCceeeeccCCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL-----PSVLSEHSTH--RSQFIVAHPVNPPY 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~-----~~~l~~~~~~--~~r~~g~hf~~P~~ 74 (290)
+|++++++++|+|+.+++..- + .+++ +.+++++++.+.+..+. ...++..+.. ..++..+ --|..
T Consensus 66 ~~~~e~~~~aD~Vi~~v~~~~-~-~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~--~gP~~ 137 (328)
T PRK14618 66 ADPEEALAGADFAVVAVPSKA-L-RETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVL--SGPNH 137 (328)
T ss_pred CCHHHHHcCCCEEEEECchHH-H-HHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEE--ECccH
Confidence 578888999999999999993 3 4444 34567776666655554 4455554421 1122111 12222
Q ss_pred CC------CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee
Q psy17416 75 FI------PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 115 (290)
Q Consensus 75 ~~------~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g 115 (290)
.. +..-++.+ .+++.++.+..++...|..+... .|..|
T Consensus 138 a~~~~~~~~~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~-~di~g 181 (328)
T PRK14618 138 AEEIARFLPAATVVAS--PEPGLARRVQAAFSGPSFRVYTS-RDRVG 181 (328)
T ss_pred HHHHHcCCCeEEEEEe--CCHHHHHHHHHHhCCCcEEEEec-CCccc
Confidence 11 22233333 46888899999998888755543 56444
No 312
>PRK08291 ectoine utilization protein EutC; Validated
Probab=88.03 E-value=1.1 Score=41.19 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=47.1
Q ss_pred cchhHHHHHHHHHH-cC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~-~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
.|.+++..+..+.. .+ -+|.+|+++++..++..+.+++.+ | -.+....++++++.++|+|
T Consensus 140 aG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g------------~~v~~~~d~~~al~~aDiV 201 (330)
T PRK08291 140 AGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G------------IPVTVARDVHEAVAGADII 201 (330)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C------------ceEEEeCCHHHHHccCCEE
Confidence 57777776666653 34 579999999998776655443221 1 0123357888889999999
Q ss_pred EEccccch
Q psy17416 200 QESVPEIL 207 (290)
Q Consensus 200 ieavpe~~ 207 (290)
+-|+|...
T Consensus 202 i~aT~s~~ 209 (330)
T PRK08291 202 VTTTPSEE 209 (330)
T ss_pred EEeeCCCC
Confidence 99999764
No 313
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=88.03 E-value=2.1 Score=42.27 Aligned_cols=88 Identities=11% Similarity=0.225 Sum_probs=54.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchH-hhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR-ECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~-~~l~~aDlVi 200 (290)
.|.+|+.++..+.+.|++|.++|.|++..+++.+ .|... ..++.+-...++ ..++++|.++
T Consensus 425 ~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-----------~g~~~-------i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 425 YGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-----------RGIRA-------VLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------CCCeE-------EEcCCCCHHHHHhcCccccCEEE
Confidence 6899999999999999999999999998877654 11110 001111011122 1356899999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
-+++++.+... +...+.+..+.-.+++
T Consensus 487 v~~~~~~~~~~-iv~~~~~~~~~~~iia 513 (558)
T PRK10669 487 LTIPNGYEAGE-IVASAREKRPDIEIIA 513 (558)
T ss_pred EEcCChHHHHH-HHHHHHHHCCCCeEEE
Confidence 99998765432 2233333334444554
No 314
>PRK06046 alanine dehydrogenase; Validated
Probab=87.85 E-value=2.3 Score=39.08 Aligned_cols=89 Identities=12% Similarity=0.177 Sum_probs=56.8
Q ss_pred eeeEEecccchhHHHHHHHHHH-cCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFAS-AGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~-~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|+++ .|.+++..+..+.. .+. .|.+||++++..++..+.+.+.+ + -.+...+++++
T Consensus 132 vgiiG---~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~------------~~v~~~~~~~~ 190 (326)
T PRK06046 132 VGIIG---AGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G------------CDVTVAEDIEE 190 (326)
T ss_pred EEEEC---CcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C------------ceEEEeCCHHH
Confidence 35555 67777776665553 243 67899999988877666443211 0 11233567888
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 230 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 230 (290)
++. +|+|+.|+|... .+|. .+.+++++.|.+-
T Consensus 191 ~l~-aDiVv~aTps~~----P~~~--~~~l~~g~hV~~i 222 (326)
T PRK06046 191 ACD-CDILVTTTPSRK----PVVK--AEWIKEGTHINAI 222 (326)
T ss_pred Hhh-CCEEEEecCCCC----cEec--HHHcCCCCEEEec
Confidence 886 999999999754 3332 2346788877643
No 315
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.77 E-value=7.7 Score=35.21 Aligned_cols=159 Identities=11% Similarity=0.114 Sum_probs=99.4
Q ss_pred cEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC-
Q psy17416 12 IFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA- 85 (290)
Q Consensus 12 d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~- 85 (290)
.......||+. -+.++++.|+++-.+ |-|+.--- .++.-.++......-..+=|+|++|-..++ .+.
T Consensus 64 ~~~~~~l~~~~-t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~------~~~~ 136 (297)
T PRK14168 64 HEIQDNQSVDI-TEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVGRLM------IGGD 136 (297)
T ss_pred EEEEEECCCCC-CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhHHHHh------cCCC
Confidence 34444455665 345677777777554 34555444 577777888888766778899998876543 121
Q ss_pred --CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHc----CceeEEecCCHHHHHHHHHHHHH
Q psy17416 86 --WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASA----GYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 86 --~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~----G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.--|.|-.++.++++..|- ++ ....-.+++| ....|+-++++|.+. +..|++....
T Consensus 137 ~~~~~PcTp~avi~lL~~~~i-~l---~Gk~vvViGr-S~iVGkPla~lL~~~~~~~~atVtv~hs~------------- 198 (297)
T PRK14168 137 EVKFLPCTPAGIQEMLVRSGV-ET---SGAEVVVVGR-SNIVGKPIANMMTQKGPGANATVTIVHTR------------- 198 (297)
T ss_pred CCCCcCCCHHHHHHHHHHhCC-CC---CCCEEEEECC-CCcccHHHHHHHHhcccCCCCEEEEecCC-------------
Confidence 1235555566666666542 11 1122234555 577889999999887 5677764211
Q ss_pred HHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 160 TLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.+++||+||-|+. |..++. ...++++++++
T Consensus 199 --------------------------T~~l~~~~~~ADIvVsAvG-----kp~~i~--~~~ik~gavVI 234 (297)
T PRK14168 199 --------------------------SKNLARHCQRADILIVAAG-----VPNLVK--PEWIKPGATVI 234 (297)
T ss_pred --------------------------CcCHHHHHhhCCEEEEecC-----CcCccC--HHHcCCCCEEE
Confidence 3456667899999999887 333433 34577999887
No 316
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=87.75 E-value=9.6 Score=34.62 Aligned_cols=161 Identities=11% Similarity=0.160 Sum_probs=101.8
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC-
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA- 84 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~- 84 (290)
.+......+|+. -+.++++.|+++-.++ -|+.--- +++.-.++......-..+=|+|++|=..+.. .+
T Consensus 69 i~~~~~~l~~~~-s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~-----~~~ 142 (299)
T PLN02516 69 IKSFDVDLPENI-SEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAM-----KGR 142 (299)
T ss_pred CEEEEEECCCCC-CHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhHhc-----CCC
Confidence 344445566665 3456888888875443 4555443 5777788888887667778999888544321 10
Q ss_pred -CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHH
Q psy17416 85 -AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQD 163 (290)
Q Consensus 85 -~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~ 163 (290)
+.--|.|-..+.+++++.|- ++ ..-.-.+++| ....|+-++++|.+.|..|++....
T Consensus 143 ~~~~~PcTp~avi~lL~~~~i-~l---~Gk~vvVIGR-S~iVGkPla~lL~~~~ATVtvchs~----------------- 200 (299)
T PLN02516 143 EPLFLPCTPKGCLELLSRSGI-PI---KGKKAVVVGR-SNIVGLPVSLLLLKADATVTVVHSR----------------- 200 (299)
T ss_pred CCCCCCCCHHHHHHHHHHhCC-CC---CCCEEEEECC-CccchHHHHHHHHHCCCEEEEeCCC-----------------
Confidence 11124445556666666542 11 1122234555 5778999999999999999887431
Q ss_pred HHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 164 YHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 164 ~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++++.+++||+||-|+.-.. +++ .+.+++|++++
T Consensus 201 ----------------------T~nl~~~~~~ADIvv~AvGk~~-----~i~--~~~vk~gavVI 236 (299)
T PLN02516 201 ----------------------TPDPESIVREADIVIAAAGQAM-----MIK--GDWIKPGAAVI 236 (299)
T ss_pred ----------------------CCCHHHHHhhCCEEEEcCCCcC-----ccC--HHHcCCCCEEE
Confidence 3456667899999999998433 333 34577999887
No 317
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=87.74 E-value=1.7 Score=38.94 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=45.2
Q ss_pred cchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|-+|+.++..+...| .+|.+++++++..++..+.+... . .+.+..+..+.+.++|+||
T Consensus 131 aGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~-----------~---------~~~~~~~~~~~~~~~DivI 190 (278)
T PRK00258 131 AGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGAL-----------G---------KAELDLELQEELADFDLII 190 (278)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc-----------c---------ceeecccchhccccCCEEE
Confidence 5888999999999999 68999999998776554432210 0 0111113334578899999
Q ss_pred Eccccch
Q psy17416 201 ESVPEIL 207 (290)
Q Consensus 201 eavpe~~ 207 (290)
-|+|...
T Consensus 191 naTp~g~ 197 (278)
T PRK00258 191 NATSAGM 197 (278)
T ss_pred ECCcCCC
Confidence 9999655
No 318
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=87.58 E-value=1.5 Score=40.22 Aligned_cols=94 Identities=21% Similarity=0.249 Sum_probs=59.6
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCC------ChHHHhcccCCCCceeeeccCCCCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF------LPSVLSEHSTHRSQFIVAHPVNPPY 74 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~------~~~~l~~~~~~~~r~~g~hf~~P~~ 74 (290)
|+||++++++||+|+-+||= ..=+++.+++....++++++.+.|=++ .++++.+..-...++..+--.|-
T Consensus 62 t~Dl~~a~~~ad~iv~avPs--~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~-- 137 (329)
T COG0240 62 TTDLAEALDGADIIVIAVPS--QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF-- 137 (329)
T ss_pred ccCHHHHHhcCCEEEEECCh--HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH--
Confidence 68999999999999999984 445778888888889999999887443 44455543322222333333222
Q ss_pred CCCeeeEeeCCCC-------CHHHHHHHHHHHHH
Q psy17416 75 FIPLVEIVPAAWT-------SERVITRTREIMTE 101 (290)
Q Consensus 75 ~~~lvEiv~~~~t-------~~~~~~~~~~~~~~ 101 (290)
.-||..+..| +++..+.+...+..
T Consensus 138 ---A~EVa~g~pta~~vas~d~~~a~~v~~~f~~ 168 (329)
T COG0240 138 ---AKEVAQGLPTAVVVASNDQEAAEKVQALFSS 168 (329)
T ss_pred ---HHHHhcCCCcEEEEecCCHHHHHHHHHHhCC
Confidence 3355554444 45555555555544
No 319
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=87.13 E-value=1.3 Score=40.51 Aligned_cols=92 Identities=16% Similarity=0.198 Sum_probs=48.9
Q ss_pred eeeEEecccchhHHHHHHHHHH-cC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~-~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|+++ .|..++.-+..+.. .+ -+|.+|+++++..++..+++++ + + -.+...++.++
T Consensus 131 l~viG---aG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~----------~--------~~v~~~~~~~~ 188 (313)
T PF02423_consen 131 LGVIG---AGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L----------G--------VPVVAVDSAEE 188 (313)
T ss_dssp EEEE-----SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C----------C--------TCEEEESSHHH
T ss_pred EEEEC---CCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c----------c--------ccceeccchhh
Confidence 35555 45555543333322 23 4899999999888766664432 1 1 12344688999
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 231 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 231 (290)
++++||+|+-|+|..-.. .++. ...+++++.|..-.
T Consensus 189 av~~aDii~taT~s~~~~--P~~~--~~~l~~g~hi~~iG 224 (313)
T PF02423_consen 189 AVRGADIIVTATPSTTPA--PVFD--AEWLKPGTHINAIG 224 (313)
T ss_dssp HHTTSSEEEE----SSEE--ESB---GGGS-TT-EEEE-S
T ss_pred hcccCCEEEEccCCCCCC--cccc--HHHcCCCcEEEEec
Confidence 999999999999866610 2222 23578888776433
No 320
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.07 E-value=10 Score=34.48 Aligned_cols=161 Identities=12% Similarity=0.094 Sum_probs=99.2
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-+-..+|+..- .++.+.|+++-.+ |-|+.--- .++.-.++...+..-..+=|+|++|-..+..= .+
T Consensus 61 i~~~~~~l~~~~~~-~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g-----~~ 134 (297)
T PRK14167 61 IEAIDVEIDPDAPA-EELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVGRLVAG-----DA 134 (297)
T ss_pred CEEEEEECCCCCCH-HHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhCC-----CC
Confidence 34444456666443 4677777777544 35666544 57777788888876667779999887664311 01
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHc----CceeEEecCCHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASA----GYKVSLYDVLSEQIENAKNTIQHTL 161 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~----G~~V~l~d~~~e~l~~a~~~i~~~~ 161 (290)
.--|.|-..+.++++..+- + + ..-.-.+++| ....|+-++++|.+. +..|++...
T Consensus 135 ~~~PcTp~avi~lL~~~~i-~--l-~Gk~vvViGr-S~iVGkPla~lL~~~~~~~~aTVtvchs---------------- 193 (297)
T PRK14167 135 RFKPCTPHGIQKLLAAAGV-D--T-EGADVVVVGR-SDIVGKPMANLLIQKADGGNATVTVCHS---------------- 193 (297)
T ss_pred CCCCCCHHHHHHHHHHhCC-C--C-CCCEEEEECC-CcccHHHHHHHHhcCccCCCCEEEEeCC----------------
Confidence 1124445555555555432 1 1 1112224445 567789999999876 667776532
Q ss_pred HHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 162 QDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 162 ~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
-|.++.+.+++||+||-|+- |..++. ...++++++++
T Consensus 194 -----------------------~T~~l~~~~~~ADIvIsAvG-----kp~~i~--~~~ik~gaiVI 230 (297)
T PRK14167 194 -----------------------RTDDLAAKTRRADIVVAAAG-----VPELID--GSMLSEGATVI 230 (297)
T ss_pred -----------------------CCCCHHHHHhhCCEEEEccC-----CcCccC--HHHcCCCCEEE
Confidence 13456667889999999887 444544 25678999887
No 321
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.80 E-value=2.6 Score=42.18 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=57.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh-hcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE-CLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~-~l~~aDlVi 200 (290)
.|.+|+.++..+.+.|++++++|.|++.++++.+ .|... ..+..+-.+.+++ .+.+||.+|
T Consensus 408 ~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~v-------~~GDat~~~~L~~agi~~A~~vv 469 (601)
T PRK03659 408 FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------YGYKV-------YYGDATQLELLRAAGAEKAEAIV 469 (601)
T ss_pred CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------CCCeE-------EEeeCCCHHHHHhcCCccCCEEE
Confidence 6899999999999999999999999998876654 22111 0011110111221 267899999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCC
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 232 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts 232 (290)
-+++++-... .+...+.+..+.-.|++-..+
T Consensus 470 ~~~~d~~~n~-~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 470 ITCNEPEDTM-KIVELCQQHFPHLHILARARG 500 (601)
T ss_pred EEeCCHHHHH-HHHHHHHHHCCCCeEEEEeCC
Confidence 9999876432 333344444555566654333
No 322
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.66 E-value=1.1 Score=41.25 Aligned_cols=94 Identities=13% Similarity=0.091 Sum_probs=53.5
Q ss_pred cchhHHHHHHHHHHcC-------ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASAG-------YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-------~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
.|.+|..++..+...| .++.++|+++. .+.+... .++ +.+. .. ....+++...++.++++
T Consensus 11 aG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~-~~~~~g~---~~D------l~d~-~~--~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 11 AGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPA-LKALEGV---VME------LQDC-AF--PLLKSVVATTDPEEAFK 77 (325)
T ss_pred CCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCc-cccccce---eee------hhhc-cc--cccCCceecCCHHHHhC
Confidence 3889999998887744 48999999763 1111110 000 0000 00 01124444567666799
Q ss_pred cCcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 195 DAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 195 ~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+||+||.+.-- |..+-+++..++.+..+++++++
T Consensus 78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iii 125 (325)
T cd01336 78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVL 125 (325)
T ss_pred CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 99999965422 11123566677888876666555
No 323
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=86.49 E-value=1.6 Score=41.52 Aligned_cols=64 Identities=20% Similarity=0.169 Sum_probs=43.8
Q ss_pred cchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..++..+...| .+|++++++++......+. .|. ..+. ..++.+.+.++|+||
T Consensus 188 aG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~----------~g~-----------~~i~-~~~l~~~l~~aDvVi 245 (417)
T TIGR01035 188 AGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKE----------LGG-----------EAVK-FEDLEEYLAEADIVI 245 (417)
T ss_pred ChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH----------cCC-----------eEee-HHHHHHHHhhCCEEE
Confidence 5899999999998888 6899999998765433221 110 0011 135566788999999
Q ss_pred Eccccch
Q psy17416 201 ESVPEIL 207 (290)
Q Consensus 201 eavpe~~ 207 (290)
.|++..-
T Consensus 246 ~aT~s~~ 252 (417)
T TIGR01035 246 SSTGAPH 252 (417)
T ss_pred ECCCCCC
Confidence 9986443
No 324
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.24 E-value=11 Score=34.06 Aligned_cols=160 Identities=13% Similarity=0.151 Sum_probs=99.7
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-....||+.. +.++++.|+++-.++ -|+.--- .++.-..+...+..-..+=|+|++|=..+. .+.
T Consensus 56 i~~~~~~l~~~~t-~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g~l~------~g~ 128 (287)
T PRK14181 56 MVSKAHRLPSDAT-LSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLL------LGE 128 (287)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHHHHh------cCC
Confidence 3444455666653 446777777775443 4555433 567777888888766777799988765432 121
Q ss_pred --CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHc----CceeEEecCCHHHHHHHHHHHHH
Q psy17416 86 --WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASA----GYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 86 --~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~----G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.--|.|-..+.++++..|- ++ ..-.-.+++| ....|+-++++|.+. +..|++...
T Consensus 129 ~~~~~PcTp~avi~lL~~~~i-~l---~Gk~vvViGr-S~iVGkPla~lL~~~~~~~~AtVtvchs-------------- 189 (287)
T PRK14181 129 TDGFIPCTPAGIIELLKYYEI-PL---HGRHVAIVGR-SNIVGKPLAALLMQKHPDTNATVTLLHS-------------- 189 (287)
T ss_pred CCCCCCCCHHHHHHHHHHhCC-CC---CCCEEEEECC-CccchHHHHHHHHhCcCCCCCEEEEeCC--------------
Confidence 1224555556666666542 11 1112234455 567899999999887 667775321
Q ss_pred HHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 160 TLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
-|.++.+.++.||+||-|+.-.- ++. .+.+++|++++
T Consensus 190 -------------------------~T~~l~~~~~~ADIvV~AvG~p~-----~i~--~~~ik~GavVI 226 (287)
T PRK14181 190 -------------------------QSENLTEILKTADIIIAAIGVPL-----FIK--EEMIAEKAVIV 226 (287)
T ss_pred -------------------------CCCCHHHHHhhCCEEEEccCCcC-----ccC--HHHcCCCCEEE
Confidence 14567777899999999998443 333 34577999887
No 325
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=86.22 E-value=9.2 Score=34.80 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=58.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHH-HHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~-l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|.-|..-|+.+...|++|++--+.... -++|.+ .|+- ..+.+++++.+|+|+
T Consensus 26 YGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~-----------dGf~---------------V~~v~ea~k~ADvim 79 (338)
T COG0059 26 YGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKE-----------DGFK---------------VYTVEEAAKRADVVM 79 (338)
T ss_pred cChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHh-----------cCCE---------------eecHHHHhhcCCEEE
Confidence 5778888899999999997654333222 333333 2221 356778999999999
Q ss_pred EccccchHHHHHHHH-HHhhhCCCCcEEE
Q psy17416 201 ESVPEILQIKHQVYR-AIDIFMSSNTILS 228 (290)
Q Consensus 201 eavpe~~~~k~~~~~-~l~~~~~~~~ii~ 228 (290)
.-+|+.. -.++++ +|.+.++.+..+.
T Consensus 80 ~L~PDe~--q~~vy~~~I~p~Lk~G~aL~ 106 (338)
T COG0059 80 ILLPDEQ--QKEVYEKEIAPNLKEGAALG 106 (338)
T ss_pred EeCchhh--HHHHHHHHhhhhhcCCceEE
Confidence 9999777 668887 8999999999776
No 326
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.19 E-value=18 Score=32.78 Aligned_cols=156 Identities=10% Similarity=0.088 Sum_probs=96.6
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC-
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA- 84 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~- 84 (290)
.+.-....+|+.. ..++.+.|+++-.++ -|+.--- .++.-..+...+..-..+=|+|+.|...+.. ..
T Consensus 61 i~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~-----~~~ 134 (295)
T PRK14174 61 MNSTVIELPADTT-EEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVM-----GHL 134 (295)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhc-----CCC
Confidence 3444445666653 447788887775553 4666544 4677777777777556777999988775431 11
Q ss_pred -CCCCHHHHHHHHHHHHHh-----CCccEEEeccceeeEEecccchhHHHHHHHHHH----cCceeEEecCCHHHHHHHH
Q psy17416 85 -AWTSERVITRTREIMTEI-----GMKPVTLTTEIRGFALNRIHGLIGQAWAMIFAS----AGYKVSLYDVLSEQIENAK 154 (290)
Q Consensus 85 -~~t~~~~~~~~~~~~~~l-----gk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~----~G~~V~l~d~~~e~l~~a~ 154 (290)
+.--|.|-.++.++++.. ||..+ +++| ....|+-++++|.+ .|..|+.....
T Consensus 135 ~~~~~PcTp~ail~ll~~y~i~l~Gk~vv---------ViGr-S~iVG~Pla~lL~~~~~~~~atVt~~hs~-------- 196 (295)
T PRK14174 135 DKCFVSCTPYGILELLGRYNIETKGKHCV---------VVGR-SNIVGKPMANLMLQKLKESNCTVTICHSA-------- 196 (295)
T ss_pred CCCcCCCCHHHHHHHHHHhCCCCCCCEEE---------EECC-CCcchHHHHHHHHhccccCCCEEEEEeCC--------
Confidence 111233444455566655 44444 3444 56778999988876 57777765532
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 155 NTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 155 ~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+.++.+.+++||+||-|+.-. .++. .+.++++++++
T Consensus 197 -------------------------------t~~l~~~~~~ADIvI~Avg~~-----~li~--~~~vk~GavVI 232 (295)
T PRK14174 197 -------------------------------TKDIPSYTRQADILIAAIGKA-----RFIT--ADMVKPGAVVI 232 (295)
T ss_pred -------------------------------chhHHHHHHhCCEEEEecCcc-----CccC--HHHcCCCCEEE
Confidence 234455678999999999743 3332 23458999887
No 327
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=86.16 E-value=3.3 Score=30.88 Aligned_cols=76 Identities=20% Similarity=0.121 Sum_probs=50.4
Q ss_pred cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-CCch---HhhcccCcEEEEcc-----ccc
Q psy17416 136 AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-TPVL---RECLEDAIFIQESV-----PEI 206 (290)
Q Consensus 136 ~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~l---~~~l~~aDlVieav-----pe~ 206 (290)
.|.+|+.+|.+++.++.+.++.... +.. .++++ ..|+ .+.....|+|+..- .-.
T Consensus 24 ~~~~v~gvD~s~~~~~~a~~~~~~~-------~~~----------~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~ 86 (112)
T PF12847_consen 24 PGARVVGVDISPEMLEIARERAAEE-------GLS----------DRITFVQGDAEFDPDFLEPFDLVICSGFTLHFLLP 86 (112)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHT-------TTT----------TTEEEEESCCHGGTTTSSCEEEEEECSGSGGGCCH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhc-------CCC----------CCeEEEECccccCcccCCCCCEEEECCCccccccc
Confidence 7899999999999999888765221 000 12222 1222 22345688888866 222
Q ss_pred hHHHHHHHHHHhhhCCCCcEEE
Q psy17416 207 LQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 207 ~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.+.++.+++++.+.++|+..+.
T Consensus 87 ~~~~~~~l~~~~~~L~pgG~lv 108 (112)
T PF12847_consen 87 LDERRRVLERIRRLLKPGGRLV 108 (112)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEE
T ss_pred hhHHHHHHHHHHHhcCCCcEEE
Confidence 2567888999999999988765
No 328
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=86.12 E-value=2.2 Score=40.39 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=45.6
Q ss_pred eeeEeeCCCCCH-HHHHHHHHHHHH--hCCccEEEec-------cceeeEEecccchhHHHHHHHHHHcCceeEEecCCH
Q psy17416 78 LVEIVPAAWTSE-RVITRTREIMTE--IGMKPVTLTT-------EIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLS 147 (290)
Q Consensus 78 lvEiv~~~~t~~-~~~~~~~~~~~~--lgk~~v~v~~-------d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~ 147 (290)
+-|.=.|...++ +.+..+..++.. +....+.+.. |.-=|+.||=.|.||.++|..+...|++|++++.+.
T Consensus 159 ~~~~g~gr~~~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~ 238 (399)
T PRK05579 159 CGDVGPGRMAEPEEIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPV 238 (399)
T ss_pred CCCcCCCCCCCHHHHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCc
Confidence 334444455564 445666666532 4333344421 111288999999999999999999999999887653
No 329
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=86.02 E-value=3.1 Score=37.58 Aligned_cols=107 Identities=14% Similarity=0.139 Sum_probs=64.8
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHH--HHhhcCCCcEEeecCCCCChH---HHhcccC-CCCceeeeccCCCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRA--IDIFMSSNTILSSSTSSFLPS---VLSEHST-HRSQFIVAHPVNPPYF 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~--~~~~~~~~~i~~snts~~~~~---~l~~~~~-~~~r~~g~hf~~P~~~ 75 (290)
++.+++++.+|+||=|++.+-.++.-++.. +-..+.++.++. ++||.++. ++++.+. +--+|+..-..-.+.-
T Consensus 47 ~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivv-d~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~ 125 (292)
T PRK15059 47 ETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIV-DMSSISPIETKRFARQVNELGGDYLDAPVSGGEIG 125 (292)
T ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHH
Confidence 466778899999999999997777765542 333455666554 33444544 5555543 2233444211111110
Q ss_pred --CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecc
Q psy17416 76 --IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 76 --~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d 112 (290)
.--+-++.| .+++.++.+..+++.+|+..+.+ .+
T Consensus 126 a~~g~l~~~~g--G~~~~~~~~~p~l~~~g~~~~~~-G~ 161 (292)
T PRK15059 126 AREGTLSIMVG--GDEAVFERVKPLFELLGKNITLV-GG 161 (292)
T ss_pred HhcCcEEEEEc--CCHHHHHHHHHHHHHHcCCcEEe-CC
Confidence 111223333 37899999999999999988887 44
No 330
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=86.01 E-value=1.6 Score=39.67 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=66.8
Q ss_pred hCCccEEEeccceeeEEecc----cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChh
Q psy17416 102 IGMKPVTLTTEIRGFALNRI----HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPE 177 (290)
Q Consensus 102 lgk~~v~v~~d~~gf~~nri----~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~ 177 (290)
-|-..+.. .-.||..--++ .|..|...|.+....|.+|++.|+|.+++...-. .+. +.
T Consensus 153 ~GG~Gvll-gGvpGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd----~f~-----~r-------- 214 (371)
T COG0686 153 NGGKGVLL-GGVPGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD----LFG-----GR-------- 214 (371)
T ss_pred cCCceeEe-cCCCCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhH----hhC-----ce--------
Confidence 34446665 56666432222 4788999999988889999999999987653222 110 00
Q ss_pred hhhcccccCCchHhhcccCcEEEEccccchH-HHHHHHHHHhhhCCCCcEEE
Q psy17416 178 EQFGLISGTPVLRECLEDAIFIQESVPEILQ-IKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 178 ~~~~~i~~~~~l~~~l~~aDlVieavpe~~~-~k~~~~~~l~~~~~~~~ii~ 228 (290)
..-..+-..++++++..+|+||-+|=-.-. .=+-+.+++.+.++++++|+
T Consensus 215 -v~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 215 -VHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred -eEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 001112235678889999999987632111 01234466677889999887
No 331
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.74 E-value=1.7 Score=40.11 Aligned_cols=107 Identities=13% Similarity=0.080 Sum_probs=63.5
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCCh-------HHHhcccCCCCceeeeccCCCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-------SVLSEHSTHRSQFIVAHPVNPP 73 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~-------~~l~~~~~~~~r~~g~hf~~P~ 73 (290)
++|++++++++|+|+=|+| ...=.++++++....++++++.|-+-++.. ..|.+.+.. .++.. ...|-
T Consensus 68 t~d~~~a~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~--l~GP~ 142 (341)
T PRK12439 68 TTDFAEAANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGI--LAGPN 142 (341)
T ss_pred ECCHHHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEE--EECCC
Confidence 4688889999999999998 444567889999989999766665556664 234444421 22211 12222
Q ss_pred CCCCeeeEeeCCCC-------CHHHHHHHHHHHHHhCCccEEEeccceee
Q psy17416 74 YFIPLVEIVPAAWT-------SERVITRTREIMTEIGMKPVTLTTEIRGF 116 (290)
Q Consensus 74 ~~~~lvEiv~~~~t-------~~~~~~~~~~~~~~lgk~~v~v~~d~~gf 116 (290)
. ..|+..+..| +++..+.+.+++..-+...... .|..|.
T Consensus 143 ~---a~ev~~g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s-~Di~gv 188 (341)
T PRK12439 143 I---AREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTT-DDVVGV 188 (341)
T ss_pred H---HHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEc-CchHHH
Confidence 2 2233333322 5666677777766666544433 454443
No 332
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.41 E-value=23 Score=31.86 Aligned_cols=161 Identities=12% Similarity=0.077 Sum_probs=100.9
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+......||+.. +.++++.|+++-.++ -|+.--- .++.-.++......-..+=|+|+.|-..+.. ..+
T Consensus 56 i~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~KDVDGl~~~n~g~l~~-----~~~ 129 (279)
T PRK14178 56 IGSVGIELPGDAT-TRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLGRLVS-----GLP 129 (279)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhC-----CCC
Confidence 3444555677743 447888888874443 3555433 5677778888887667777999888665331 111
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~ 165 (290)
.--|.|-..+.++++..+- .+ +...-.+++| ....|+.+++++...|..|+......
T Consensus 130 ~~~PcTp~av~~ll~~~~i---~l-~Gk~V~ViGr-s~~vGrpla~lL~~~~atVtv~hs~t------------------ 186 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKI---SI-AGKRAVVVGR-SIDVGRPMAALLLNADATVTICHSKT------------------ 186 (279)
T ss_pred CCCCCCHHHHHHHHHHcCC---CC-CCCEEEEECC-CccccHHHHHHHHhCCCeeEEEecCh------------------
Confidence 2235555666666666542 11 1222334444 45678999999999999998877432
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.++.+.+++||+||-|++-..-++.+ .++++++++
T Consensus 187 ---------------------~~L~~~~~~ADIvI~Avgk~~lv~~~-------~vk~GavVI 221 (279)
T PRK14178 187 ---------------------ENLKAELRQADILVSAAGKAGFITPD-------MVKPGATVI 221 (279)
T ss_pred ---------------------hHHHHHHhhCCEEEECCCcccccCHH-------HcCCCcEEE
Confidence 23445678999999999833223222 358999887
No 333
>PRK06823 ornithine cyclodeaminase; Validated
Probab=85.35 E-value=4.9 Score=36.80 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=53.4
Q ss_pred cchhHHHHHHHHH--HcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFA--SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~--~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
.|..++.-+..+. ..--+|.+|+++++..++..+..++ .+ -.+...++.++++++||+|
T Consensus 136 ~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~------------~~v~~~~~~~~av~~ADIV 196 (315)
T PRK06823 136 TGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG------------FAVNTTLDAAEVAHAANLI 196 (315)
T ss_pred CcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC------------CcEEEECCHHHHhcCCCEE
Confidence 4555544333333 2234899999999988765553321 11 1233467888999999999
Q ss_pred EEccccchHHHHHHHHHHhhhCCCCcEEEeCC
Q psy17416 200 QESVPEILQIKHQVYRAIDIFMSSNTILSSST 231 (290)
Q Consensus 200 ieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 231 (290)
+-|++..- .+|. .+.+++++.|..-.
T Consensus 197 ~taT~s~~----P~~~--~~~l~~G~hi~~iG 222 (315)
T PRK06823 197 VTTTPSRE----PLLQ--AEDIQPGTHITAVG 222 (315)
T ss_pred EEecCCCC----ceeC--HHHcCCCcEEEecC
Confidence 99998655 4442 23567888776433
No 334
>KOG0068|consensus
Probab=85.27 E-value=7.9 Score=35.73 Aligned_cols=123 Identities=19% Similarity=0.140 Sum_probs=81.3
Q ss_pred eeeEeeCCCCC-----HHHHHHHHHHHHHhCCccEEEecc---ceeeEEecc---------cchhHHHHHHHHHHcCcee
Q psy17416 78 LVEIVPAAWTS-----ERVITRTREIMTEIGMKPVTLTTE---IRGFALNRI---------HGLIGQAWAMIFASAGYKV 140 (290)
Q Consensus 78 lvEiv~~~~t~-----~~~~~~~~~~~~~lgk~~v~v~~d---~~gf~~nri---------~G~~g~~ia~~~~~~G~~V 140 (290)
=+-|+..|..+ +-++.....+.++++...+.++.+ .-+|++--+ .|.+|++.|..+...|..|
T Consensus 93 gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~v 172 (406)
T KOG0068|consen 93 GILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHV 172 (406)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchHHHHHHHHhcCceE
Confidence 34455555554 344555667777788777777432 112221111 4789999999999999999
Q ss_pred EEecCC-HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhh
Q psy17416 141 SLYDVL-SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDI 219 (290)
Q Consensus 141 ~l~d~~-~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~ 219 (290)
+.||.- +....++. ++. -.++++++..||++-.-+|-..+-++-+-.+.-.
T Consensus 173 I~~dpi~~~~~~~a~---------------------------gvq-~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA 224 (406)
T KOG0068|consen 173 IGYDPITPMALAEAF---------------------------GVQ-LVSLEEILPKADFITLHVPLTPSTEKLLNDETFA 224 (406)
T ss_pred EeecCCCchHHHHhc---------------------------cce-eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHH
Confidence 998853 33222111 111 2467889999999999999888777666666667
Q ss_pred hCCCCcEEE
Q psy17416 220 FMSSNTILS 228 (290)
Q Consensus 220 ~~~~~~ii~ 228 (290)
.|+.|+-|+
T Consensus 225 ~mKkGVriI 233 (406)
T KOG0068|consen 225 KMKKGVRII 233 (406)
T ss_pred HhhCCcEEE
Confidence 789998776
No 335
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=85.26 E-value=4.6 Score=33.40 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=57.2
Q ss_pred HHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHH
Q psy17416 131 MIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIK 210 (290)
Q Consensus 131 ~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k 210 (290)
..+...+.+|.+++-+++.++++.+++++.+....--|...+++...+..+ ....+. -.++|+|+.+..... -
T Consensus 40 ~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~---i~~~I~--~~~pdiv~vglG~Pk--Q 112 (171)
T cd06533 40 ELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEE---IIERIN--ASGADILFVGLGAPK--Q 112 (171)
T ss_pred HHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHH---HHHHHH--HcCCCEEEEECCCCH--H
Confidence 334556899999999999999999988887654433344444443222111 112232 257999999887554 2
Q ss_pred HHHHHHHhhhCCCCcEEE
Q psy17416 211 HQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 211 ~~~~~~l~~~~~~~~ii~ 228 (290)
..+..++.+.++.+.++.
T Consensus 113 E~~~~~~~~~l~~~v~~~ 130 (171)
T cd06533 113 ELWIARHKDRLPVPVAIG 130 (171)
T ss_pred HHHHHHHHHHCCCCEEEE
Confidence 244466777776665554
No 336
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=85.10 E-value=5.3 Score=37.14 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=55.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|..|+.+|+.+...|.+|.+.+.+|-..-+|. + ++.+ ...++++...+|++|-
T Consensus 217 YG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~------M-------------------dGf~-V~~m~~Aa~~gDifiT 270 (420)
T COG0499 217 YGWVGRGIAMRLRGMGARVIVTEVDPIRALEAA------M-------------------DGFR-VMTMEEAAKTGDIFVT 270 (420)
T ss_pred ccccchHHHHHhhcCCCeEEEEecCchHHHHHh------h-------------------cCcE-EEEhHHhhhcCCEEEE
Confidence 378899999999999999999999996432221 1 1112 2346677889999998
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP 236 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 236 (290)
|+--.--+. .+--..+++++|++ |......
T Consensus 271 ~TGnkdVi~----~eh~~~MkDgaIl~-N~GHFd~ 300 (420)
T COG0499 271 ATGNKDVIR----KEHFEKMKDGAILA-NAGHFDV 300 (420)
T ss_pred ccCCcCccC----HHHHHhccCCeEEe-cccccce
Confidence 765322222 33444688999886 5554443
No 337
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=84.81 E-value=8.5 Score=29.08 Aligned_cols=72 Identities=18% Similarity=0.136 Sum_probs=47.5
Q ss_pred cchhHHHHHHHHHHc--Ccee-EEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc--cC
Q psy17416 122 HGLIGQAWAMIFASA--GYKV-SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE--DA 196 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~--G~~V-~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~--~a 196 (290)
.|.+|+.....+... +.++ .++|++++..+.+.++ . ++...+|+++.++ +.
T Consensus 8 ~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~----------~--------------~~~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 8 AGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK----------Y--------------GIPVYTDLEELLADEDV 63 (120)
T ss_dssp TSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------T--------------TSEEESSHHHHHHHTTE
T ss_pred CcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH----------h--------------cccchhHHHHHHHhhcC
Confidence 567777766555544 5565 4799999887665330 1 1224677888777 79
Q ss_pred cEEEEccccchHHHHHHHHHHhh
Q psy17416 197 IFIQESVPEILQIKHQVYRAIDI 219 (290)
Q Consensus 197 DlVieavpe~~~~k~~~~~~l~~ 219 (290)
|+|+.|+|... ..++..+..+
T Consensus 64 D~V~I~tp~~~--h~~~~~~~l~ 84 (120)
T PF01408_consen 64 DAVIIATPPSS--HAEIAKKALE 84 (120)
T ss_dssp SEEEEESSGGG--HHHHHHHHHH
T ss_pred CEEEEecCCcc--hHHHHHHHHH
Confidence 99999999776 4466555443
No 338
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=84.71 E-value=2.5 Score=37.37 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=52.4
Q ss_pred chhHHHHHHHHHH-cCceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 123 GLIGQAWAMIFAS-AGYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 123 G~~g~~ia~~~~~-~G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
|.||+.++..+.. .++++. ++|++++..... .. ..+..++++++.+.++|+||
T Consensus 11 G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------------~~-------~~i~~~~dl~~ll~~~DvVi 65 (257)
T PRK00048 11 GRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------------GA-------LGVAITDDLEAVLADADVLI 65 (257)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------------CC-------CCccccCCHHHhccCCCEEE
Confidence 8899998887765 366654 478776543221 00 12234678888888899999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHH
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l 239 (290)
++.|.+.. .+. +...+..+.-+...|.+++.+++
T Consensus 66 d~t~p~~~--~~~---~~~al~~G~~vvigttG~s~~~~ 99 (257)
T PRK00048 66 DFTTPEAT--LEN---LEFALEHGKPLVIGTTGFTEEQL 99 (257)
T ss_pred ECCCHHHH--HHH---HHHHHHcCCCEEEECCCCCHHHH
Confidence 88874442 233 33334445544444666665543
No 339
>CHL00194 ycf39 Ycf39; Provisional
Probab=84.63 E-value=5.1 Score=36.26 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=41.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.++..+...|++|+..+++++....... .|. . -....+.-..++.+++.++|.||-
T Consensus 9 tG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~-----------~~v-----~--~v~~Dl~d~~~l~~al~g~d~Vi~ 70 (317)
T CHL00194 9 TGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKE-----------WGA-----E--LVYGDLSLPETLPPSFKGVTAIID 70 (317)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhh-----------cCC-----E--EEECCCCCHHHHHHHHCCCCEEEE
Confidence 4788999999999999999999998754211100 110 0 000112212456678899999998
Q ss_pred ccc
Q psy17416 202 SVP 204 (290)
Q Consensus 202 avp 204 (290)
++.
T Consensus 71 ~~~ 73 (317)
T CHL00194 71 AST 73 (317)
T ss_pred CCC
Confidence 765
No 340
>PLN00203 glutamyl-tRNA reductase
Probab=84.47 E-value=3.4 Score=40.54 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=50.5
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.||..++..+...|. +|++++++++..+...+... |. . -......++.+++.++|+||
T Consensus 274 AG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~---------g~--~--------i~~~~~~dl~~al~~aDVVI 334 (519)
T PLN00203 274 AGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP---------DV--E--------IIYKPLDEMLACAAEADVVF 334 (519)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---------CC--c--------eEeecHhhHHHHHhcCCEEE
Confidence 58999999999988896 79999999987655443110 00 0 00111245666789999999
Q ss_pred EccccchH-HHHHHHHHHh
Q psy17416 201 ESVPEILQ-IKHQVYRAID 218 (290)
Q Consensus 201 eavpe~~~-~k~~~~~~l~ 218 (290)
.|++.... +.++.++.+.
T Consensus 335 sAT~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 335 TSTSSETPLFLKEHVEALP 353 (519)
T ss_pred EccCCCCCeeCHHHHHHhh
Confidence 99865442 3445555443
No 341
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=84.26 E-value=2.2 Score=40.68 Aligned_cols=73 Identities=21% Similarity=0.170 Sum_probs=47.5
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.||..++..+...|. +|.+++++++......+. .|. . .....++.+.+.++|+||
T Consensus 190 aG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~----------~g~--~----------~~~~~~~~~~l~~aDvVI 247 (423)
T PRK00045 190 AGEMGELVAKHLAEKGVRKITVANRTLERAEELAEE----------FGG--E----------AIPLDELPEALAEADIVI 247 (423)
T ss_pred chHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH----------cCC--c----------EeeHHHHHHHhccCCEEE
Confidence 58899999988888887 799999999765443331 110 0 001134556778999999
Q ss_pred EccccchH-HHHHHHHH
Q psy17416 201 ESVPEILQ-IKHQVYRA 216 (290)
Q Consensus 201 eavpe~~~-~k~~~~~~ 216 (290)
.|++..-. +..+.++.
T Consensus 248 ~aT~s~~~~i~~~~l~~ 264 (423)
T PRK00045 248 SSTGAPHPIIGKGMVER 264 (423)
T ss_pred ECCCCCCcEEcHHHHHH
Confidence 99975432 33444444
No 342
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=84.26 E-value=1.6 Score=36.85 Aligned_cols=30 Identities=13% Similarity=0.057 Sum_probs=26.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIE 151 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~ 151 (290)
.|..|..+..-....|++|+.+-+|+..+.
T Consensus 9 sG~~Gs~i~~EA~~RGHeVTAivRn~~K~~ 38 (211)
T COG2910 9 SGKAGSRILKEALKRGHEVTAIVRNASKLA 38 (211)
T ss_pred CchhHHHHHHHHHhCCCeeEEEEeChHhcc
Confidence 477888888888999999999999998764
No 343
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.13 E-value=22 Score=32.09 Aligned_cols=160 Identities=12% Similarity=0.103 Sum_probs=97.2
Q ss_pred cEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCCC
Q psy17416 12 IFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAW 86 (290)
Q Consensus 12 d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~~ 86 (290)
+.-....||+. -..++++.|+++-.+ |-|+.--- .++.-.++......-..+=|+|++|-..+.. ..+.
T Consensus 62 ~~~~~~l~~~~-~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~-----~~~~ 135 (286)
T PRK14184 62 VSEAFRLPADT-TQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGRLAL-----GLPG 135 (286)
T ss_pred EEEEEECCCCC-CHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcccCcccCCHhhHHHHhC-----CCCC
Confidence 33444455553 234677777776544 35666544 5677778888887667778999888655321 1111
Q ss_pred CCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHH----cCceeEEecCCHHHHHHHHHHHHHHHH
Q psy17416 87 TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFAS----AGYKVSLYDVLSEQIENAKNTIQHTLQ 162 (290)
Q Consensus 87 t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~----~G~~V~l~d~~~e~l~~a~~~i~~~~~ 162 (290)
--|.|-..+.+++++.|- ++ ..-.-.+++| ....|+-++++|.+ .|..|+......
T Consensus 136 ~~PcTp~av~~lL~~~~i-~l---~Gk~vvViGr-S~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------- 195 (286)
T PRK14184 136 FRPCTPAGVMTLLERYGL-SP---AGKKAVVVGR-SNIVGKPLALMLGAPGKFANATVTVCHSRT--------------- 195 (286)
T ss_pred CCCCCHHHHHHHHHHhCC-CC---CCCEEEEECC-CccchHHHHHHHhCCcccCCCEEEEEeCCc---------------
Confidence 224455555666666542 11 1112234445 56778999999988 677887766322
Q ss_pred HHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 163 DYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 163 ~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.++.+.+++||+||-|+.-.- ++. .+.++++++++
T Consensus 196 ------------------------~~l~~~~~~ADIVI~AvG~p~-----li~--~~~vk~GavVI 230 (286)
T PRK14184 196 ------------------------PDLAEECREADFLFVAIGRPR-----FVT--ADMVKPGAVVV 230 (286)
T ss_pred ------------------------hhHHHHHHhCCEEEEecCCCC-----cCC--HHHcCCCCEEE
Confidence 345556789999999997433 333 23458999887
No 344
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=83.97 E-value=6.6 Score=32.26 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcC
Q psy17416 89 ERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKG 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g 168 (290)
|.|-..+.++++..+- + + +.-.-.+++| ....|+-++.+|.+.|..|++.+..
T Consensus 17 PcTp~aii~lL~~~~~-~--l-~Gk~v~VvGr-s~~VG~Pla~lL~~~~atVt~~h~~---------------------- 69 (160)
T PF02882_consen 17 PCTPLAIIELLEYYGI-D--L-EGKKVVVVGR-SNIVGKPLAMLLLNKGATVTICHSK---------------------- 69 (160)
T ss_dssp -HHHHHHHHHHHHTT--S--T-TT-EEEEE-T-TTTTHHHHHHHHHHTT-EEEEE-TT----------------------
T ss_pred CCCHHHHHHHHHhcCC-C--C-CCCEEEEECC-cCCCChHHHHHHHhCCCeEEeccCC----------------------
Confidence 5666777777777552 1 1 1122234455 5778999999999999988876632
Q ss_pred CCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 169 CLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 169 ~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+.++++.++.||+||-|+.-.--+ + .+.++++++++-
T Consensus 70 -----------------T~~l~~~~~~ADIVVsa~G~~~~i-----~--~~~ik~gavVID 106 (160)
T PF02882_consen 70 -----------------TKNLQEITRRADIVVSAVGKPNLI-----K--ADWIKPGAVVID 106 (160)
T ss_dssp -----------------SSSHHHHHTTSSEEEE-SSSTT-B--------GGGS-TTEEEEE
T ss_pred -----------------CCcccceeeeccEEeeeecccccc-----c--cccccCCcEEEe
Confidence 345555678999999999844433 2 235789998873
No 345
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=83.93 E-value=3.3 Score=37.10 Aligned_cols=159 Identities=15% Similarity=0.135 Sum_probs=95.9
Q ss_pred EEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCCCC
Q psy17416 13 FIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWT 87 (290)
Q Consensus 13 ~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~~t 87 (290)
..+.-.+|+. -+.+++..|+++-.++ -|+.--- -++.-..+-+.......+=|+|++|=-.+..- + +.-
T Consensus 62 ~~~~~l~~~~-t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~-~----~~~ 135 (283)
T COG0190 62 SELYDLPEDI-TEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQG-E----PGF 135 (283)
T ss_pred eEEEeCCCcC-CHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcC-C----CCC
Confidence 3344444443 3567777777775443 3555432 25555677777776677779998775553321 1 112
Q ss_pred CHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHc
Q psy17416 88 SERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQK 167 (290)
Q Consensus 88 ~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~ 167 (290)
-|.|-...+.++++.+- -+ ......+++| ....|+-++++|.+.++.|++....
T Consensus 136 ~PCTp~gi~~ll~~~~i---~l-~Gk~~vVVGr-S~iVGkPla~lL~~~naTVtvcHs~--------------------- 189 (283)
T COG0190 136 LPCTPAGIMTLLEEYGI---DL-RGKNVVVVGR-SNIVGKPLALLLLNANATVTVCHSR--------------------- 189 (283)
T ss_pred CCCCHHHHHHHHHHhCC---CC-CCCEEEEECC-CCcCcHHHHHHHHhCCCEEEEEcCC---------------------
Confidence 23344444555555442 11 1222233444 4567899999999999999876631
Q ss_pred CCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 168 GCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 168 g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.+++||+||-|+- |..+++ .+.+++++++.
T Consensus 190 ------------------T~~l~~~~k~ADIvv~AvG-----~p~~i~--~d~vk~gavVI 225 (283)
T COG0190 190 ------------------TKDLASITKNADIVVVAVG-----KPHFIK--ADMVKPGAVVI 225 (283)
T ss_pred ------------------CCCHHHHhhhCCEEEEecC-----Cccccc--cccccCCCEEE
Confidence 3455567889999999987 444444 56788998887
No 346
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=83.78 E-value=9 Score=33.29 Aligned_cols=57 Identities=26% Similarity=0.267 Sum_probs=39.8
Q ss_pred eCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeE-EecC
Q psy17416 83 PAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVS-LYDV 145 (290)
Q Consensus 83 ~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~-l~d~ 145 (290)
+.+.|.--++..+...++.++... +... ++-.-+|..|+.++..+.+.|..|+ +.|.
T Consensus 6 ~~~~Tg~Gv~~~~~~~~~~~~~~l----~~~~--v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 6 REEATGRGVAYATREALKKLGIGL----AGAR--VAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCccchHHHHHHHHHHHHhcCCCc----cCCE--EEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 356678888888888888877311 1111 1112369999999999999999887 6666
No 347
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=83.68 E-value=15 Score=31.12 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.6
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCC
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVL 146 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~ 146 (290)
.|.+|..++..++..|. +++++|.+
T Consensus 29 ~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 29 AGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 68899999999999997 89999977
No 348
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=83.36 E-value=4.1 Score=34.61 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=53.0
Q ss_pred eEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccC--Cc----h
Q psy17416 116 FALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGT--PV----L 189 (290)
Q Consensus 116 f~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~--~~----l 189 (290)
.+++| ....|+-+|++|.+.|..|+..|.+...+- . .+... +-+-+ .+ +
T Consensus 66 vVIGr-S~iVGkPla~lL~~~~AtVti~~~~~~~~~---~-----------~~~~~----------~hs~t~~~~~~~~l 120 (197)
T cd01079 66 TIINR-SEVVGRPLAALLANDGARVYSVDINGIQVF---T-----------RGESI----------RHEKHHVTDEEAMT 120 (197)
T ss_pred EEECC-CccchHHHHHHHHHCCCEEEEEecCccccc---c-----------ccccc----------ccccccccchhhHH
Confidence 34555 577899999999999999999987654331 0 00000 00011 12 6
Q ss_pred HhhcccCcEEEEccccchH-HHHHHHHHHhhhCCCCcEEEe
Q psy17416 190 RECLEDAIFIQESVPEILQ-IKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~-~k~~~~~~l~~~~~~~~ii~s 229 (290)
.+.++.||+||-|++-.-- ++ .+.+++|++++.
T Consensus 121 ~~~~~~ADIVIsAvG~~~~~i~-------~d~ik~GavVID 154 (197)
T cd01079 121 LDCLSQSDVVITGVPSPNYKVP-------TELLKDGAICIN 154 (197)
T ss_pred HHHhhhCCEEEEccCCCCCccC-------HHHcCCCcEEEE
Confidence 6788999999999994432 33 335679999874
No 349
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=83.12 E-value=6.6 Score=34.56 Aligned_cols=87 Identities=13% Similarity=0.204 Sum_probs=56.7
Q ss_pred HHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHH
Q psy17416 133 FASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQ 212 (290)
Q Consensus 133 ~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~ 212 (290)
....|++|.+++-.++.++++.+++++.+ ...-.|...+++.+.+... +...+. -+++|+|+-+..-. ||+
T Consensus 101 ~~~~~~~v~llG~~~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~e~~~---i~~~I~--~s~~dil~VglG~P---kQE 171 (243)
T PRK03692 101 AGKEGTPVFLVGGKPEVLAQTEAKLRTQW-NVNIVGSQDGYFTPEQRQA---LFERIH--ASGAKIVTVAMGSP---KQE 171 (243)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHHHh-CCEEEEEeCCCCCHHHHHH---HHHHHH--hcCCCEEEEECCCc---HHH
Confidence 34568999999999999999999988776 4333455666654322111 112333 26899999888644 455
Q ss_pred HH-HHHhhhCCCCcEEE
Q psy17416 213 VY-RAIDIFMSSNTILS 228 (290)
Q Consensus 213 ~~-~~l~~~~~~~~ii~ 228 (290)
.| .++.+.++...++.
T Consensus 172 ~~~~~~~~~~~~~v~~g 188 (243)
T PRK03692 172 IFMRDCRLVYPDALYMG 188 (243)
T ss_pred HHHHHHHHhCCCCEEEE
Confidence 55 66777776665543
No 350
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=83.10 E-value=2.7 Score=38.76 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=54.4
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH--HHhcccC-CCCceeeeccCCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHST-HRSQFIVAHPVNPPY 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~--~l~~~~~-~~~r~~g~hf~~P~~ 74 (290)
+++++.+++||+|+-++|...+.+.-+.+++-+.++++++|...+-+--+. .|.++++ .+-+-.|+=-|.+.|
T Consensus 190 ~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP 265 (330)
T PRK12480 190 DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEA 265 (330)
T ss_pred CCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCC
Confidence 579999999999999999999999999999999999999887666554444 5666664 333334444444433
No 351
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=82.90 E-value=1.6 Score=39.67 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=56.0
Q ss_pred CCcHHhhcccCcEEEEccc--------------CChHHHHHHHHHHHhhcCCCc--EEeecCCCCChHHHhcccCC-CCc
Q psy17416 1 TPVLRECLEDAIFIQESVP--------------EILQIKHQVYRAIDIFMSSNT--ILSSSTSSFLPSVLSEHSTH-RSQ 63 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~--------------e~~~~K~~~~~~~~~~~~~~~--i~~snts~~~~~~l~~~~~~-~~r 63 (290)
++|+++ +++||+||=++. .|.++=+++.++|.+.+ +++ |+.||-..+-..-+...... ++|
T Consensus 61 t~d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~~~~~~sg~~~~r 138 (305)
T TIGR01763 61 TNNYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTYVAWQKSGFPKER 138 (305)
T ss_pred cCCHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHHCcCHHH
Confidence 467775 899999999988 46677778888899986 554 44466444333333333333 467
Q ss_pred eeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCcc
Q psy17416 64 FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKP 106 (290)
Q Consensus 64 ~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~ 106 (290)
++|+- |.-++......+++.+|-.|
T Consensus 139 viG~g------------------~~lds~R~~~~la~~l~v~~ 163 (305)
T TIGR01763 139 VIGQA------------------GVLDSARFRTFIAMELGVSV 163 (305)
T ss_pred EEEec------------------cchHHHHHHHHHHHHhCcCH
Confidence 77763 45555566666667777533
No 352
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=82.86 E-value=12 Score=33.41 Aligned_cols=104 Identities=17% Similarity=0.140 Sum_probs=78.4
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|.++++..+|+|+=|| ++..=.++++++.. ..++.++-|=..+++++.|..++. ..+++-.=+.-|+-.-.=+=
T Consensus 53 ~~~~~~~~~~advv~Lav--KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t 128 (266)
T COG0345 53 TTDNQEAVEEADVVFLAV--KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVT 128 (266)
T ss_pred cCcHHHHHhhCCEEEEEe--ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcce
Confidence 356778899999999776 33444567777777 678999999999999999999997 56666665555554333333
Q ss_pred -EeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 81 -IVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 81 -iv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+..+...+++-.+.+.+++..+|+ ++.|
T Consensus 129 ~i~~~~~~~~~~~~~v~~l~~~~G~-v~~v 157 (266)
T COG0345 129 AISANANVSEEDKAFVEALLSAVGK-VVEV 157 (266)
T ss_pred eeecCccCCHHHHHHHHHHHHhcCC-eEEe
Confidence 334577789999999999999998 5556
No 353
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=82.83 E-value=1.5 Score=33.93 Aligned_cols=93 Identities=11% Similarity=0.156 Sum_probs=52.9
Q ss_pred cchhHHHHHHHHHHc-Ccee-EEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCC-chHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASA-GYKV-SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP-VLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~-G~~V-~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~-~l~~~l~~aDl 198 (290)
.|.+|..+..++..+ .+++ .+++++... .+-+. ..+ +.......+.+.. +.+ .+.++|+
T Consensus 8 tG~vG~~l~~lL~~hp~~e~~~~~~~~~~~-g~~~~---~~~-------------~~~~~~~~~~~~~~~~~-~~~~~Dv 69 (121)
T PF01118_consen 8 TGYVGRELLRLLAEHPDFELVALVSSSRSA-GKPLS---EVF-------------PHPKGFEDLSVEDADPE-ELSDVDV 69 (121)
T ss_dssp TSHHHHHHHHHHHHTSTEEEEEEEESTTTT-TSBHH---HTT-------------GGGTTTEEEBEEETSGH-HHTTESE
T ss_pred CCHHHHHHHHHHhcCCCccEEEeeeecccc-CCeee---hhc-------------cccccccceeEeecchh-HhhcCCE
Confidence 578899998888875 3454 345554411 11111 000 0000112333333 444 4699999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS 237 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~ 237 (290)
||.|+|... .+++..++ ++.++.++.+++.+...
T Consensus 70 vf~a~~~~~--~~~~~~~~---~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 70 VFLALPHGA--SKELAPKL---LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp EEE-SCHHH--HHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred EEecCchhH--HHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence 999999554 56666665 45788888888877654
No 354
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.46 E-value=5.7 Score=37.82 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=52.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh-cccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC-LEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~-l~~aDlVi 200 (290)
.|.+|..++..+...|++|.++|++++.++.+.+... .....+ ...-...+.++ +.++|.||
T Consensus 8 ~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~--------~~~~~g---------d~~~~~~l~~~~~~~a~~vi 70 (453)
T PRK09496 8 AGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLD--------VRTVVG---------NGSSPDVLREAGAEDADLLI 70 (453)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcC--------EEEEEe---------CCCCHHHHHHcCCCcCCEEE
Confidence 5899999999999999999999999987665433100 000001 11111234444 67899999
Q ss_pred EccccchHHHHHHHHHHhhhC-CCCcEEE
Q psy17416 201 ESVPEILQIKHQVYRAIDIFM-SSNTILS 228 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~-~~~~ii~ 228 (290)
-+++++- ....+....+.+ +...+++
T Consensus 71 ~~~~~~~--~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 71 AVTDSDE--TNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred EecCChH--HHHHHHHHHHHhcCCCeEEE
Confidence 9988654 223333333333 4545555
No 355
>PLN03075 nicotianamine synthase; Provisional
Probab=82.06 E-value=40 Score=30.64 Aligned_cols=121 Identities=10% Similarity=0.017 Sum_probs=69.8
Q ss_pred cchhHHHHHHHHHH--cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccC-CchHh---hccc
Q psy17416 122 HGLIGQAWAMIFAS--AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGT-PVLRE---CLED 195 (290)
Q Consensus 122 ~G~~g~~ia~~~~~--~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~l~~---~l~~ 195 (290)
.|..+......++. .+-.++.+|.+++.++.|.+.+.+. .|. .+++++. .|+.+ .+.+
T Consensus 132 cGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------~gL----------~~rV~F~~~Da~~~~~~l~~ 195 (296)
T PLN03075 132 SGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------PDL----------SKRMFFHTADVMDVTESLKE 195 (296)
T ss_pred CCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------cCc----------cCCcEEEECchhhcccccCC
Confidence 45554443333333 2447999999999999888755431 111 1222221 12111 2467
Q ss_pred CcEEEEccccc--hHHHHHHHHHHhhhCCCCcEEEeCC-CCcCHHHHhcc-----CCCCCcEEEeccCCCCC
Q psy17416 196 AIFIQESVPEI--LQIKHQVYRAIDIFMSSNTILSSST-SSFLPSVLSEH-----STHRSQFIVAHPVNPPY 259 (290)
Q Consensus 196 aDlVieavpe~--~~~k~~~~~~l~~~~~~~~ii~s~t-s~~~~~~la~~-----~~~~~r~ig~Hf~~p~~ 259 (290)
-|+|+-.+--. .+-|..+++.+.+.+++|.++...+ .++. .-+-.. +..-+.+.-.||.+++.
T Consensus 196 FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r-~~LYp~v~~~~~~gf~~~~~~~P~~~v~ 266 (296)
T PLN03075 196 YDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGAR-AFLYPVVDPCDLRGFEVLSVFHPTDEVI 266 (296)
T ss_pred cCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchH-hhcCCCCChhhCCCeEEEEEECCCCCce
Confidence 89999874222 2568999999999999999887544 2222 111111 11225677888877763
No 356
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=82.02 E-value=4.1 Score=41.12 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcCCCcEEeecCCCCChHH
Q psy17416 26 HQVYRAIDIFMSSNTILSSSTSSFLPSV 53 (290)
Q Consensus 26 ~~~~~~~~~~~~~~~i~~snts~~~~~~ 53 (290)
.++|++|.+++.+++.++|-||.-.+..
T Consensus 186 ~~~~~~l~~~~~~~~~~~t~t~a~~vr~ 213 (662)
T PRK01747 186 PNLFNALARLARPGATLATFTSAGFVRR 213 (662)
T ss_pred HHHHHHHHHHhCCCCEEEEeehHHHHHH
Confidence 5899999999999999999998888873
No 357
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=81.91 E-value=10 Score=35.00 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=23.5
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCH
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLS 147 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~ 147 (290)
+|.+|..+|..+++.|. .++++|.+.
T Consensus 32 ~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 32 AGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 68899999999999997 899999875
No 358
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=81.82 E-value=6.3 Score=34.53 Aligned_cols=140 Identities=20% Similarity=0.173 Sum_probs=77.7
Q ss_pred CCCCChHHHhccc-------CCCCceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEE
Q psy17416 46 TSSFLPSVLSEHS-------THRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFAL 118 (290)
Q Consensus 46 ts~~~~~~l~~~~-------~~~~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~ 118 (290)
+++++..++.... ...-.|--+|-+||....=.-|.+++..- .-|++.. |
T Consensus 9 ~~~id~~e~~~F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~-------------l~g~~vL----D------ 65 (243)
T COG2227 9 TQNVDYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFD-------------LPGLRVL----D------ 65 (243)
T ss_pred cccCCHHHHHHHHHHHhhhcCCCCceeeeeeeccchhhhhhhhhhcccC-------------CCCCeEE----E------
Confidence 4566665443211 23456777888888774433333332111 2233211 2
Q ss_pred ecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc---cc
Q psy17416 119 NRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL---ED 195 (290)
Q Consensus 119 nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l---~~ 195 (290)
.|--|..++..+++.|..|+..|.+++.++.|..+-.. .|..-++. ..+.++.. ..
T Consensus 66 ---vGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e-------~gv~i~y~-----------~~~~edl~~~~~~ 124 (243)
T COG2227 66 ---VGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALE-------SGVNIDYR-----------QATVEDLASAGGQ 124 (243)
T ss_pred ---ecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhh-------ccccccch-----------hhhHHHHHhcCCC
Confidence 23335567788899999999999999999888763332 22211110 11112111 12
Q ss_pred CcEEE-----EccccchHHHHHHHHHHhhhCCCCcEEEeCCCC
Q psy17416 196 AIFIQ-----ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS 233 (290)
Q Consensus 196 aDlVi-----eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 233 (290)
=|+|+ |-||..- .++....+.++|+.++.-+|-.
T Consensus 125 FDvV~cmEVlEHv~dp~----~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 125 FDVVTCMEVLEHVPDPE----SFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred ccEEEEhhHHHccCCHH----HHHHHHHHHcCCCcEEEEeccc
Confidence 34443 5565433 5778888899999888755543
No 359
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=81.60 E-value=12 Score=34.72 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=53.0
Q ss_pred cchhHHHHHHHHHHc-CceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCC-CCCChh-h-h-hcccccCCchHhhccc
Q psy17416 122 HGLIGQAWAMIFASA-GYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLK-GSLSPE-E-Q-FGLISGTPVLRECLED 195 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~-G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~-~~~~~~-~-~-~~~i~~~~~l~~~l~~ 195 (290)
.|.||+.++..+... ++++. +.|.+++......++ .|+.. +..+.. . . ...+....++++.+.+
T Consensus 9 ~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~----------~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~ 78 (341)
T PRK04207 9 YGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVE----------KGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK 78 (341)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHh----------cCCCccccCccccccccCCceEEcCChhHhhcc
Confidence 399999988877654 56654 456665433332221 12110 000000 0 0 0235555677777789
Q ss_pred CcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC
Q psy17416 196 AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS 233 (290)
Q Consensus 196 aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 233 (290)
+|+|++|.|.... .+... .++..|+.++.+++.
T Consensus 79 vDVVIdaT~~~~~--~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 ADIVVDATPGGVG--AKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred CCEEEECCCchhh--HHHHH---HHHHCCCEEEEcCCC
Confidence 9999999996553 33333 344456666666664
No 360
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=81.59 E-value=6.4 Score=32.09 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=45.9
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHH--H-HHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQ--I-ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~--l-~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
+|+++ .-+.+.++++..+...|..+.+.....-. . ...++..++...+ .-..+++++++++
T Consensus 6 ~~vGD-~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~---------------~g~~i~~~~~~~e 69 (158)
T PF00185_consen 6 AYVGD-GHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKK---------------NGGKITITDDIEE 69 (158)
T ss_dssp EEESS-TTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHH---------------HTTEEEEESSHHH
T ss_pred EEECC-CCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHH---------------hCCCeEEEeCHHH
Confidence 35554 34667788899999999998887655421 1 1223322322211 0135677899999
Q ss_pred hcccCcEEEEccc
Q psy17416 192 CLEDAIFIQESVP 204 (290)
Q Consensus 192 ~l~~aDlVieavp 204 (290)
+++++|+|+--.-
T Consensus 70 ~l~~aDvvy~~~~ 82 (158)
T PF00185_consen 70 ALKGADVVYTDRW 82 (158)
T ss_dssp HHTT-SEEEEESS
T ss_pred hcCCCCEEEEcCc
Confidence 9999999985544
No 361
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=81.55 E-value=5.4 Score=38.70 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=43.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|+.++..+...|++|.+++++++..+...+... + .... ..++. .+.++|+||.
T Consensus 340 aGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~---------~---~~~~----------~~~~~-~l~~~DiVIn 396 (477)
T PRK09310 340 AGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQ---------G---KAFP----------LESLP-ELHRIDIIIN 396 (477)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---------c---ceec----------hhHhc-ccCCCCEEEE
Confidence 4788999999999999999999999876654433110 0 0000 11222 2568999999
Q ss_pred ccccchH
Q psy17416 202 SVPEILQ 208 (290)
Q Consensus 202 avpe~~~ 208 (290)
|+|....
T Consensus 397 atP~g~~ 403 (477)
T PRK09310 397 CLPPSVT 403 (477)
T ss_pred cCCCCCc
Confidence 9997764
No 362
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=81.35 E-value=6.9 Score=33.91 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=68.2
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccC--CCCceeeeccCCCC--CCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST--HRSQFIVAHPVNPP--YFI 76 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~--~~~r~~g~hf~~P~--~~~ 76 (290)
|+|=.||+.|||+||-=.|- -...-.+++++-.-.++++|+ +|+-++|.+.+..-.. +++ -+.+--|+|. +-|
T Consensus 130 ttddreavedad~iitwlpk-g~~qpdiikkfiddipegaiv-thactipttkf~kifed~gre-dlnvtsyhpg~vpem 206 (343)
T COG4074 130 TTDDREAVEDADMIITWLPK-GGVQPDIIKKFIDDIPEGAIV-THACTIPTTKFKKIFEDMGRE-DLNVTSYHPGTVPEM 206 (343)
T ss_pred ecCcHhhhcCCCeEEEeccC-CCCCccHHHHHHhcCCCCceE-eeecccchHHHHHHHHHhCcc-ccceeccCCCCCccc
Confidence 56778899999999976653 334456777777778888876 6777899997665442 122 2344444443 223
Q ss_pred CeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 77 PLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 77 ~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
+----+.....|++++..+.++.+.-.-...
T Consensus 207 kgqvyiaegyaseeavn~lyelg~karg~af 237 (343)
T COG4074 207 KGQVYIAEGYASEEAVNALYELGEKARGLAF 237 (343)
T ss_pred cCcEEEecccccHHHHHHHHHHHHHhhcccc
Confidence 3333455667899999999998877443333
No 363
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=81.14 E-value=4.2 Score=36.53 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=44.4
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|-++++++..+...|. +|.+++|+++..++..+.+.. .+.. ..+....++.+.+.++|+||
T Consensus 133 aGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~-------~~~~----------~~~~~~~~~~~~~~~~DiVI 195 (282)
T TIGR01809 133 AGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQ-------VGVI----------TRLEGDSGGLAIEKAAEVLV 195 (282)
T ss_pred CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhh-------cCcc----------eeccchhhhhhcccCCCEEE
Confidence 68888999999998886 799999998876554442211 0000 00111123334567899999
Q ss_pred Eccccch
Q psy17416 201 ESVPEIL 207 (290)
Q Consensus 201 eavpe~~ 207 (290)
-|+|-..
T Consensus 196 naTp~g~ 202 (282)
T TIGR01809 196 STVPADV 202 (282)
T ss_pred ECCCCCC
Confidence 9999654
No 364
>PLN00135 malate dehydrogenase
Probab=81.13 E-value=9.3 Score=34.88 Aligned_cols=48 Identities=8% Similarity=-0.076 Sum_probs=30.6
Q ss_pred ccccCCchHhhcccCcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 182 LISGTPVLRECLEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 182 ~i~~~~~l~~~l~~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
.++.+++..+++++||+||.+.-- |..+-+++.++|.+++.++++++.
T Consensus 45 ~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aiviv 106 (309)
T PLN00135 45 GVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLV 106 (309)
T ss_pred CcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 344445633468999999976543 333456666778886566666553
No 365
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=81.11 E-value=5.6 Score=29.99 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcccc
Q psy17416 126 GQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPE 205 (290)
Q Consensus 126 g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe 205 (290)
...++..|...|.+|..||.--........ .+ ..++...++++++++++|.||.+++=
T Consensus 19 ~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~--~~--------------------~~~~~~~~~~~~~~~~~D~vvl~t~h 76 (106)
T PF03720_consen 19 ALELIEELKERGAEVSVYDPYVDEEEIKEL--GK--------------------LEGVEVCDDLEEALKGADAVVLATDH 76 (106)
T ss_dssp HHHHHHHHHHTT-EEEEE-TTSHHHHHHHH--CH--------------------HHCEEEESSHHHHHTTESEEEESS--
T ss_pred HHHHHHHHHHCCCEEEEECCccChHHHHhh--CC--------------------ccceEEecCHHHHhcCCCEEEEEecC
Confidence 345677788889999999976543221110 00 12345567888899999999999872
Q ss_pred chHHHHH-HHHHHhhhCCCCcEEE
Q psy17416 206 ILQIKHQ-VYRAIDIFMSSNTILS 228 (290)
Q Consensus 206 ~~~~k~~-~~~~l~~~~~~~~ii~ 228 (290)
+- -+. -++++...++.+.+|.
T Consensus 77 ~~--f~~l~~~~~~~~~~~~~~ii 98 (106)
T PF03720_consen 77 DE--FRELDWEEIAKLMRKPPVII 98 (106)
T ss_dssp GG--GGCCGHHHHHHHSCSSEEEE
T ss_pred HH--HhccCHHHHHHhcCCCCEEE
Confidence 22 222 3455666676666665
No 366
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=80.80 E-value=3.4 Score=36.87 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=35.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTL 161 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~ 161 (290)
.+-+|.++|..+++.|++|+++.|+.+.+++..+.+++..
T Consensus 15 SsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~ 54 (265)
T COG0300 15 SSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT 54 (265)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh
Confidence 4668999999999999999999999999998888777653
No 367
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=80.67 E-value=7.3 Score=29.87 Aligned_cols=41 Identities=7% Similarity=0.010 Sum_probs=30.4
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP 236 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 236 (290)
.++|+||.|+|.+... ++...+...+.++++++..+|.+..
T Consensus 64 ~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 64 LAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred cCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccC
Confidence 5899999999988644 4444445567899999877777764
No 368
>KOG1014|consensus
Probab=80.44 E-value=3.3 Score=37.56 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=35.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTL 161 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~ 161 (290)
..-+|++.|.-+++.|++|.++.|+++.+++..+.|++..
T Consensus 58 TDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~ 97 (312)
T KOG1014|consen 58 TDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKY 97 (312)
T ss_pred CCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999888877654
No 369
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=80.00 E-value=4.5 Score=31.05 Aligned_cols=83 Identities=16% Similarity=0.094 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc--ccCcEEEEc
Q psy17416 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL--EDAIFIQES 202 (290)
Q Consensus 125 ~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l--~~aDlViea 202 (290)
+|....+.+...|.+|+..+.+++.++.+.+ .|. +..+.. ..-.+...+.+.. .+.|+||+|
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~-----------~Ga-~~~~~~----~~~~~~~~i~~~~~~~~~d~vid~ 65 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKE-----------LGA-DHVIDY----SDDDFVEQIRELTGGRGVDVVIDC 65 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-----------TTE-SEEEET----TTSSHHHHHHHHTTTSSEEEEEES
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHh-----------hcc-cccccc----cccccccccccccccccceEEEEe
Confidence 4566666677778999999999998877665 221 100000 0000111222323 359999999
Q ss_pred cccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 203 VPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 203 vpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+.. ...+....+.++++..++
T Consensus 66 ~g~-----~~~~~~~~~~l~~~G~~v 86 (130)
T PF00107_consen 66 VGS-----GDTLQEAIKLLRPGGRIV 86 (130)
T ss_dssp SSS-----HHHHHHHHHHEEEEEEEE
T ss_pred cCc-----HHHHHHHHHHhccCCEEE
Confidence 982 234455445566655443
No 370
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=79.78 E-value=8.8 Score=36.48 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=45.6
Q ss_pred cchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|-||.-.|..+.+.| ..|++.+|+.+...+..+++. .....-+++.+.+.++|+||
T Consensus 186 AGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~----------------------~~~~~l~el~~~l~~~DvVi 243 (414)
T COG0373 186 AGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG----------------------AEAVALEELLEALAEADVVI 243 (414)
T ss_pred ccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC----------------------CeeecHHHHHHhhhhCCEEE
Confidence 5889999999999999 589999999987765544222 01111245666789999999
Q ss_pred Eccccch
Q psy17416 201 ESVPEIL 207 (290)
Q Consensus 201 eavpe~~ 207 (290)
.|+....
T Consensus 244 ssTsa~~ 250 (414)
T COG0373 244 SSTSAPH 250 (414)
T ss_pred EecCCCc
Confidence 8865443
No 371
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=79.72 E-value=9.2 Score=34.51 Aligned_cols=97 Identities=8% Similarity=0.076 Sum_probs=60.0
Q ss_pred HHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCC--hHHHhccc-CCCCceeeeccCCCCCC--CCe
Q psy17416 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHS-THRSQFIVAHPVNPPYF--IPL 78 (290)
Q Consensus 4 l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~--~~~l~~~~-~~~~r~~g~hf~~P~~~--~~l 78 (290)
+.+.+.++|+|+=++|-+ .+ .+++.++...++++.++...+++.+ ..+++..+ .+.-+++.++-.-.++- ..+
T Consensus 53 ~~~~~~~~dvIi~~vp~~-~~-~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~ 130 (298)
T TIGR00872 53 LSQRLSAPRVVWVMVPHG-IV-DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGY 130 (298)
T ss_pred HHhhcCCCCEEEEEcCch-HH-HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC
Confidence 344567899999999988 44 5566788888888777665444433 33444433 23344555554432221 122
Q ss_pred eeEeeCCCCCHHHHHHHHHHHHHhCCc
Q psy17416 79 VEIVPAAWTSERVITRTREIMTEIGMK 105 (290)
Q Consensus 79 vEiv~~~~t~~~~~~~~~~~~~~lgk~ 105 (290)
=++.| -+++.++.+..+++.++..
T Consensus 131 -~~~~g--G~~~~~~~~~~~l~~~~~~ 154 (298)
T TIGR00872 131 -CFMIG--GDGEAFARAEPLFADVAPE 154 (298)
T ss_pred -eeeeC--CCHHHHHHHHHHHHHhcCc
Confidence 22333 3788999999999999863
No 372
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=79.58 E-value=9.3 Score=36.40 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=44.1
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|-||+.++..+...|. ++++++++++......+.+. . . .....+++.+.+.++|+||
T Consensus 189 aG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~----------~--~---------~~~~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 189 AGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR----------N--A---------SAHYLSELPQLIKKADIII 247 (414)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc----------C--C---------eEecHHHHHHHhccCCEEE
Confidence 48899999999998885 79999999876543333110 0 0 0111245566788999999
Q ss_pred Eccccch
Q psy17416 201 ESVPEIL 207 (290)
Q Consensus 201 eavpe~~ 207 (290)
-|++.+-
T Consensus 248 ~aT~a~~ 254 (414)
T PRK13940 248 AAVNVLE 254 (414)
T ss_pred ECcCCCC
Confidence 9988544
No 373
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.39 E-value=22 Score=34.21 Aligned_cols=86 Identities=17% Similarity=0.017 Sum_probs=47.9
Q ss_pred cchhHHHHHHHHHHc---C----ceeEEecC--CHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 122 HGLIGQAWAMIFASA---G----YKVSLYDV--LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~---G----~~V~l~d~--~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+|.++.++...++++ | ..+.++|. +.+.++.-.-.+++.. ...+..+..+++..++
T Consensus 132 ag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a---------------~pll~~v~i~~~~~ea 196 (452)
T cd05295 132 SAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLA---------------FPLLRGISVTTDLDVA 196 (452)
T ss_pred cHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhH---------------HhhcCCcEEEECCHHH
Confidence 577888877777763 3 24678898 4444332222222211 1112234445555667
Q ss_pred cccCcEEEEcccc--------------chHHHHHHHHHHhhhCC
Q psy17416 193 LEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMS 222 (290)
Q Consensus 193 l~~aDlVieavpe--------------~~~~k~~~~~~l~~~~~ 222 (290)
+++||+||.+.-- |..+-+.+.+.|.+..+
T Consensus 197 ~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~ 240 (452)
T cd05295 197 FKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAK 240 (452)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999976542 12234445556777776
No 374
>PRK15076 alpha-galactosidase; Provisional
Probab=78.62 E-value=3.5 Score=39.49 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=17.6
Q ss_pred CCcHHhhcccCcEEEEcccC
Q psy17416 1 TPVLRECLEDAIFIQESVPE 20 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e 20 (290)
|+|+.+|++|||+|++++--
T Consensus 66 ttD~~eal~dADfVv~ti~v 85 (431)
T PRK15076 66 TTDRREALQGADYVINAIQV 85 (431)
T ss_pred ECCHHHHhCCCCEEeEeeee
Confidence 57899999999999998754
No 375
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=78.62 E-value=22 Score=31.76 Aligned_cols=67 Identities=10% Similarity=-0.043 Sum_probs=41.3
Q ss_pred cchhHHHHHHHHHHcC---cee-EEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh-cccC
Q psy17416 122 HGLIGQAWAMIFASAG---YKV-SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC-LEDA 196 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G---~~V-~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~-l~~a 196 (290)
.|.||..++..+...+ +++ .+++++++..++... .....+++++. ..+.
T Consensus 10 ~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~--------------------------~~~~~~~l~~ll~~~~ 63 (267)
T PRK13301 10 LGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG--------------------------RVALLDGLPGLLAWRP 63 (267)
T ss_pred ccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc--------------------------cCcccCCHHHHhhcCC
Confidence 6999999998876542 443 457887754333221 01235677774 4689
Q ss_pred cEEEEccccchHHHHHHHHH
Q psy17416 197 IFIQESVPEILQIKHQVYRA 216 (290)
Q Consensus 197 DlVieavpe~~~~k~~~~~~ 216 (290)
|+|+||-. .+.-++.-..
T Consensus 64 DlVVE~A~--~~av~e~~~~ 81 (267)
T PRK13301 64 DLVVEAAG--QQAIAEHAEG 81 (267)
T ss_pred CEEEECCC--HHHHHHHHHH
Confidence 99999988 3334444443
No 376
>PLN00106 malate dehydrogenase
Probab=78.42 E-value=3.2 Score=38.18 Aligned_cols=93 Identities=14% Similarity=0.160 Sum_probs=55.2
Q ss_pred CcHHhhcccCcEEEEccc--------------CChHHHHHHHHHHHhhcCCCcEE--eecCCCC---ChH-HHhcccC-C
Q psy17416 2 PVLRECLEDAIFIQESVP--------------EILQIKHQVYRAIDIFMSSNTIL--SSSTSSF---LPS-VLSEHST-H 60 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~--------------e~~~~K~~~~~~~~~~~~~~~i~--~snts~~---~~~-~l~~~~~-~ 60 (290)
+|+.++++|||+||=+.- .|.++=++++..+.+.+ |++++ .||-..- -++ .+..... .
T Consensus 78 ~d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD~~~~i~t~~~~~~s~~p 156 (323)
T PLN00106 78 DQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVNSTVPIAAEVLKKAGVYD 156 (323)
T ss_pred CCHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHHcCCCC
Confidence 567889999999996643 45566678888888887 55533 3454331 122 2223332 4
Q ss_pred CCceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEE
Q psy17416 61 RSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFAL 118 (290)
Q Consensus 61 ~~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~ 118 (290)
|+|++|+- + -+.-..-..+++++|..|..+ .++++
T Consensus 157 ~~~viG~~------------------~-LDs~Rl~~~lA~~lgv~~~~V----~~~Vi 191 (323)
T PLN00106 157 PKKLFGVT------------------T-LDVVRANTFVAEKKGLDPADV----DVPVV 191 (323)
T ss_pred cceEEEEe------------------c-chHHHHHHHHHHHhCCChhhe----EEEEE
Confidence 67777763 1 123334455677788755444 55553
No 377
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=77.89 E-value=4.5 Score=38.62 Aligned_cols=55 Identities=22% Similarity=0.275 Sum_probs=37.1
Q ss_pred cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcc
Q psy17416 136 AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV 203 (290)
Q Consensus 136 ~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieav 203 (290)
.+.++.++|.+++.++......++..++. | ..-++..++|..+|+.+||+|+-++
T Consensus 31 ~~~el~L~Did~~r~~~i~~~~~~~v~~~---g----------~~~kv~~ttd~~eAl~gAdfVi~~~ 85 (442)
T COG1486 31 PVRELALYDIDEERLKIIAILAKKLVEEA---G----------APVKVEATTDRREALEGADFVITQI 85 (442)
T ss_pred CcceEEEEeCCHHHHHHHHHHHHHHHHhh---C----------CCeEEEEecCHHHHhcCCCEEEEEE
Confidence 35688999999998873333333333221 1 1135677899999999999999553
No 378
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.50 E-value=29 Score=32.96 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=29.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+|.+|..++..+...|++|+++|.+++..++..+
T Consensus 239 ~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~ 272 (453)
T PRK09496 239 GGNIGYYLAKLLEKEGYSVKLIERDPERAEELAE 272 (453)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 6899999999999999999999999988766544
No 379
>KOG2653|consensus
Probab=77.38 E-value=42 Score=31.39 Aligned_cols=137 Identities=15% Similarity=0.239 Sum_probs=81.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc---ccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL---EDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l---~~aDl 198 (290)
++.||..++...+.+|+.|..|++.....|+.+..-.+ | ..|....++++-+ +.--.
T Consensus 14 LaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--------~------------~~i~ga~S~ed~v~klk~PR~ 73 (487)
T KOG2653|consen 14 LAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--------G------------TKIIGAYSLEDFVSKLKKPRV 73 (487)
T ss_pred HhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--------C------------CcccCCCCHHHHHHhcCCCcE
Confidence 67899999999999999999999998887765542111 1 0122234444432 33344
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEE-eCCCCcCHHHH-hcc-CCCCCcEEEecc-------CCCCCCCCeEEEec
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILS-SSTSSFLPSVL-SEH-STHRSQFIVAHP-------VNPPYFIPLVEIVP 268 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~~l-a~~-~~~~~r~ig~Hf-------~~p~~~~~lvEvv~ 268 (290)
|+.-+-.-.. --.++++|.+++.++-||+ ...|.+.-++= ... ...---|+|+.- .+.|.+ +|
T Consensus 74 iillvkAG~p-VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl------Mp 146 (487)
T KOG2653|consen 74 IILLVKAGAP-VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL------MP 146 (487)
T ss_pred EEEEeeCCCc-HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc------CC
Confidence 4443322222 2456788999998887777 33344443211 111 112234677664 344544 44
Q ss_pred CCCCCHHHHHHHHHHHHHc
Q psy17416 269 AAWTSERVITRTREIMTEI 287 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~l 287 (290)
| .++++...+..+++.+
T Consensus 147 G--g~~~Awp~ik~ifq~i 163 (487)
T KOG2653|consen 147 G--GSKEAWPHIKDIFQKI 163 (487)
T ss_pred C--CChHHHHHHHHHHHHH
Confidence 3 4788888888888764
No 380
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=77.22 E-value=4.8 Score=31.72 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=42.8
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhh--cCCCcEEeecCCCCChHHHhcccCCCCceeeecc
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF--MSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 69 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~--~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf 69 (290)
.++++.++++|+++=|||++ .=.++.++|... ..++.++.=++=++++.-|.....+--.+..+|+
T Consensus 60 ~~~~~~~~~aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 60 LDLEEILRDADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp --TTGGGCC-SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred cccccccccCCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 35677899999999999999 335778888877 7788888877777788877776666666777773
No 381
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=77.22 E-value=3.6 Score=38.50 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=44.9
Q ss_pred cchhHHHHHHHHHHcC-c-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAG-Y-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
.|.+|+.++..+++.+ + +|++.|++.+.+++..+.+. ..... ...-.+.-..++.+.++++|+|
T Consensus 6 ~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~------------~~~~~--~~~~d~~~~~~l~~~~~~~dvV 71 (386)
T PF03435_consen 6 AGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLL------------GDRVE--AVQVDVNDPESLAELLRGCDVV 71 (386)
T ss_dssp -SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--T------------TTTEE--EEE--TTTHHHHHHHHTTSSEE
T ss_pred CcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcc------------cccee--EEEEecCCHHHHHHHHhcCCEE
Confidence 3889999999998876 5 89999999998876655220 00000 0000111112366788999999
Q ss_pred EEccccch
Q psy17416 200 QESVPEIL 207 (290)
Q Consensus 200 ieavpe~~ 207 (290)
|.|+|...
T Consensus 72 in~~gp~~ 79 (386)
T PF03435_consen 72 INCAGPFF 79 (386)
T ss_dssp EE-SSGGG
T ss_pred EECCccch
Confidence 99998653
No 382
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=76.19 E-value=8.8 Score=35.54 Aligned_cols=34 Identities=29% Similarity=0.237 Sum_probs=28.2
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~ 155 (290)
.|.+|.-.++.+...|. .|++.|+++++++.|.+
T Consensus 177 aGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 177 AGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 68899887777777774 78888999999998877
No 383
>PRK06444 prephenate dehydrogenase; Provisional
Probab=76.05 E-value=27 Score=29.69 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=49.0
Q ss_pred cccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCC--Ce--eeEee
Q psy17416 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFI--PL--VEIVP 83 (290)
Q Consensus 8 ~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~--~l--vEiv~ 83 (290)
+++||+||=|+|.+.- .++++++. .++. -.+|.-- .+... ..+|+|.|++.=|... .+ .=++.
T Consensus 29 ~~~~DlVilavPv~~~--~~~i~~~~------~~v~-Dv~SvK~-~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv~ 95 (197)
T PRK06444 29 IKKADHAFLSVPIDAA--LNYIESYD------NNFV-EISSVKW-PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIFI 95 (197)
T ss_pred ECCCCEEEEeCCHHHH--HHHHHHhC------CeEE-eccccCH-HHHHh---cCCEEecCCCCCCCcCcccccceEEEE
Confidence 6899999999998753 34444443 2333 4444333 23322 3589999997643221 11 12223
Q ss_pred CCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 84 AAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 84 ~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
.+.++++.++.+.++++ |..++.+
T Consensus 96 ~~~~~~~~~~~~~~l~~--G~~~~~~ 119 (197)
T PRK06444 96 NDISRDNYLNEINEMFR--GYHFVEM 119 (197)
T ss_pred CCCCCHHHHHHHHHHHc--CCEEEEe
Confidence 55666676676666665 5444443
No 384
>PLN00135 malate dehydrogenase
Probab=75.96 E-value=5.9 Score=36.19 Aligned_cols=86 Identities=8% Similarity=-0.078 Sum_probs=54.9
Q ss_pred CcHHhhcccCcEEEEcccC--------------ChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhccc----CC-CC
Q psy17416 2 PVLRECLEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHS----TH-RS 62 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e--------------~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~----~~-~~ 62 (290)
+|..++++|||+|+=+.-= |.++=+++.++|.+.+.|++++..-| -|+.-++..+ +. |.
T Consensus 50 ~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvs--NPvDv~t~~~~~~sg~~~~ 127 (309)
T PLN00135 50 TDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVA--NPANTNALILKEFAPSIPE 127 (309)
T ss_pred CCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeC--CcHHHHHHHHHHHcCCCCc
Confidence 4556799999999866432 34455677788888778888665444 3665444333 22 22
Q ss_pred ceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 63 QFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 63 r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
|++| ..|.-++.+.-..+++++|-.|-
T Consensus 128 ~vig------------------~gt~LDsaR~r~~la~~l~v~~~ 154 (309)
T PLN00135 128 KNIT------------------CLTRLDHNRALGQISERLGVPVS 154 (309)
T ss_pred cEEE------------------eeehHHHHHHHHHHHHHhCcChh
Confidence 3333 34676777777778888886443
No 385
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=75.77 E-value=6.7 Score=32.44 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=42.5
Q ss_pred cchh-HHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLI-GQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~-g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|-| |..++..+.+.|..|.+.+++.+ ++.+.++++|+||
T Consensus 52 ~G~~~G~~~a~~L~~~g~~V~v~~r~~~---------------------------------------~l~~~l~~aDiVI 92 (168)
T cd01080 52 RSNIVGKPLAALLLNRNATVTVCHSKTK---------------------------------------NLKEHTKQADIVI 92 (168)
T ss_pred CcHHHHHHHHHHHhhCCCEEEEEECCch---------------------------------------hHHHHHhhCCEEE
Confidence 4654 77788999999999999987632 2233578899999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
-|++..--+..+. ++++.+++-
T Consensus 93 sat~~~~ii~~~~-------~~~~~viID 114 (168)
T cd01080 93 VAVGKPGLVKGDM-------VKPGAVVID 114 (168)
T ss_pred EcCCCCceecHHH-------ccCCeEEEE
Confidence 9998643333332 345666663
No 386
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=75.69 E-value=27 Score=31.47 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=58.6
Q ss_pred CcHHhhccc---CcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeec-CCCC-ChHHHhcccCCCCceeeeccCC-----
Q psy17416 2 PVLRECLED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS-TSSF-LPSVLSEHSTHRSQFIVAHPVN----- 71 (290)
Q Consensus 2 ~~l~~~~~~---~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~sn-ts~~-~~~~l~~~~~~~~r~~g~hf~~----- 71 (290)
+++++.+++ +|+|+=++|-+-.++. ++..+-...+++.++... |++. ...+++..+... |.+|..
T Consensus 48 ~s~~~~~~~~~~advVi~~vp~~~~~~~-v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~vdapV~G 122 (299)
T PRK12490 48 HSLEELVSKLEAPRTIWVMVPAGEVTES-VIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAER----GIHYVDCGTSG 122 (299)
T ss_pred CCHHHHHHhCCCCCEEEEEecCchHHHH-HHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHc----CCeEEeCCCCC
Confidence 466776655 6999999998866544 446666666666655433 2222 233555544321 344433
Q ss_pred CC--CCCCeeeEeeCCCCCHHHHHHHHHHHHHhCC---ccEEE
Q psy17416 72 PP--YFIPLVEIVPAAWTSERVITRTREIMTEIGM---KPVTL 109 (290)
Q Consensus 72 P~--~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk---~~v~v 109 (290)
.+ -..... ++.| -++++++.+..+++.+|+ ..+.+
T Consensus 123 ~~~~a~~g~~-~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~ 162 (299)
T PRK12490 123 GVWGLRNGYC-LMVG--GDKEIYDRLEPVFKALAPEGPGYVHA 162 (299)
T ss_pred CHHHHhcCCe-EEec--CCHHHHHHHHHHHHHhcCcCCcEEEE
Confidence 11 111111 3433 368899999999999997 44555
No 387
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=75.04 E-value=16 Score=30.54 Aligned_cols=87 Identities=14% Similarity=0.174 Sum_probs=53.2
Q ss_pred HHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHH
Q psy17416 132 IFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKH 211 (290)
Q Consensus 132 ~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~ 211 (290)
.....|++|.+++-.++.++++.+++++.+....-.|. .+++...+... ....+. -+++|+|+-+.-.. |+
T Consensus 43 ~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~~~~~---i~~~I~--~s~~dil~VglG~P---kQ 113 (177)
T TIGR00696 43 RAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGA-FGPLEPEERKA---ALAKIA--RSGAGIVFVGLGCP---KQ 113 (177)
T ss_pred HHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEE-CCCCChHHHHH---HHHHHH--HcCCCEEEEEcCCc---Hh
Confidence 34467899999999999999999988887643322233 34433221100 112222 25799999887644 45
Q ss_pred HHH-HHHhhhCCCCcEE
Q psy17416 212 QVY-RAIDIFMSSNTIL 227 (290)
Q Consensus 212 ~~~-~~l~~~~~~~~ii 227 (290)
+.| .++.+.++...++
T Consensus 114 E~~~~~~~~~~~~~v~~ 130 (177)
T TIGR00696 114 EIWMRNHRHLKPDAVMI 130 (177)
T ss_pred HHHHHHhHHhCCCcEEE
Confidence 555 5666666655444
No 388
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=74.98 E-value=9.7 Score=36.91 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=49.4
Q ss_pred eeccCCCCCCCCee---eEeeCCCCCH-HHHHHHHHHHHH------hCCccEEEeccc------eeeEEecccchhHHHH
Q psy17416 66 VAHPVNPPYFIPLV---EIVPAAWTSE-RVITRTREIMTE------IGMKPVTLTTEI------RGFALNRIHGLIGQAW 129 (290)
Q Consensus 66 g~hf~~P~~~~~lv---Eiv~~~~t~~-~~~~~~~~~~~~------lgk~~v~v~~d~------~gf~~nri~G~~g~~i 129 (290)
|.++.-|.. -.+. |.=.|...++ +.+..+..++.. -||+.++..+.+ -=|+.||=.|.||..+
T Consensus 210 G~~vi~P~~-g~lA~~g~~G~Grm~e~~~I~~~v~~~~~~~~~~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~al 288 (475)
T PRK13982 210 GVHMIGPNA-GEMAERGEAGVGRMAEPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAI 288 (475)
T ss_pred CCEEECCCC-CccccCCCcCCCCCCCHHHHHHHHHHHHhhccccccCCCEEEEecCCccccCCcceeeCCCCchHHHHHH
Confidence 555554433 2222 4555555554 456666666532 455555442222 1278999999999999
Q ss_pred HHHHHHcCceeEEec
Q psy17416 130 AMIFASAGYKVSLYD 144 (290)
Q Consensus 130 a~~~~~~G~~V~l~d 144 (290)
|..+...|.+|+++.
T Consensus 289 A~aa~~~GA~VtlI~ 303 (475)
T PRK13982 289 AAAAAAAGAEVTLIS 303 (475)
T ss_pred HHHHHHCCCcEEEEe
Confidence 999999999998864
No 389
>PRK07877 hypothetical protein; Provisional
Probab=74.68 E-value=8.1 Score=39.48 Aligned_cols=89 Identities=18% Similarity=0.171 Sum_probs=47.8
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHH-----------HHHHHHHHHHHcCCCCCCCChhhhhcccccCCc
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKN-----------TIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV 188 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~-----------~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~ 188 (290)
+| +|..++..+++.|. +++++|.+.-.+..... +.+-...++.+ +...+........++ ..+
T Consensus 115 ~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~---inp~i~v~~~~~~i~-~~n 189 (722)
T PRK07877 115 LS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAE---LDPYLPVEVFTDGLT-EDN 189 (722)
T ss_pred ec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHH---HCCCCEEEEEeccCC-HHH
Confidence 47 79999999998884 78888765433221111 11111111100 011111111222232 245
Q ss_pred hHhhcccCcEEEEccccchHHHHHHHHH
Q psy17416 189 LRECLEDAIFIQESVPEILQIKHQVYRA 216 (290)
Q Consensus 189 l~~~l~~aDlVieavpe~~~~k~~~~~~ 216 (290)
+++.++++|+|++|+- +++.|..+.+.
T Consensus 190 ~~~~l~~~DlVvD~~D-~~~~R~~ln~~ 216 (722)
T PRK07877 190 VDAFLDGLDVVVEECD-SLDVKVLLREA 216 (722)
T ss_pred HHHHhcCCCEEEECCC-CHHHHHHHHHH
Confidence 7777889999999986 67777665543
No 390
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=74.41 E-value=13 Score=37.73 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhcCCCcEEeecCCCC--ChHHHhcccCC-CCceeeeccCCCCCC------------CCeeeEeeCCCC
Q psy17416 23 QIKHQVYRAIDIFMSSNTILSSSTSSF--LPSVLSEHSTH-RSQFIVAHPVNPPYF------------IPLVEIVPAAWT 87 (290)
Q Consensus 23 ~~K~~~~~~~~~~~~~~~i~~snts~~--~~~~l~~~~~~-~~r~~g~hf~~P~~~------------~~lvEiv~~~~t 87 (290)
+.=.++++++....+++|++.=-+|.= .+..+...++. +.+|+|.|++.=... ...+=+.+.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~il~p~~~~ 87 (673)
T PRK11861 8 AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNVVLCALPEN 87 (673)
T ss_pred HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeEEEecCCCC
Confidence 344678899999999999998655542 23444444432 357999999765542 234446677888
Q ss_pred CHHHHHHHHHHHHHhCCccEEEec
Q psy17416 88 SERVITRTREIMTEIGMKPVTLTT 111 (290)
Q Consensus 88 ~~~~~~~~~~~~~~lgk~~v~v~~ 111 (290)
+++.++.+.++++.+|.+++.+..
T Consensus 88 ~~~~~~~~~~l~~~~Ga~~~~~~~ 111 (673)
T PRK11861 88 APDALARVEAMWRAARADVRAMSA 111 (673)
T ss_pred CHHHHHHHHHHHHHcCCEEEECCH
Confidence 999999999999999998887743
No 391
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=74.32 E-value=7.7 Score=34.52 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=52.4
Q ss_pred cchhHHHHHHHHHH-cCceeE-EecCC-HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFAS-AGYKVS-LYDVL-SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~-~G~~V~-l~d~~-~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
.|.||+.++..+.. .++++. ++|+. ++...+... . . .+... ..+..++|+++...++|+
T Consensus 10 ~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~---~----~--~~~~~---------~gv~~~~d~~~l~~~~Dv 71 (266)
T TIGR00036 10 AGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAG---E----L--AGIGK---------VGVPVTDDLEAVETDPDV 71 (266)
T ss_pred CCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHH---H----h--cCcCc---------CCceeeCCHHHhcCCCCE
Confidence 48899999988875 477654 46733 322110000 0 0 00000 123456788775456899
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHH
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l 239 (290)
||++.+... ....+...+..+.-+++.|.+++.++.
T Consensus 72 VIdfT~p~~-----~~~~~~~al~~g~~vVigttg~~~e~~ 107 (266)
T TIGR00036 72 LIDFTTPEG-----VLNHLKFALEHGVRLVVGTTGFSEEDK 107 (266)
T ss_pred EEECCChHH-----HHHHHHHHHHCCCCEEEECCCCCHHHH
Confidence 999997433 334444455566555555557776544
No 392
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=74.22 E-value=14 Score=37.18 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=53.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCC--CCCCChhhhhcccccCCchH-hhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCL--KGSLSPEEQFGLISGTPVLR-ECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~--~~~~~~~~~~~~i~~~~~l~-~~l~~aDl 198 (290)
.|.+|..++..+.+.|++++++|.|++.++++.+ .|.. -+..... +-++ ..++++|.
T Consensus 408 ~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~v~~GDat~~---------~~L~~agi~~A~~ 467 (621)
T PRK03562 408 FGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-----------FGMKVFYGDATRM---------DLLESAGAAKAEV 467 (621)
T ss_pred cChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------cCCeEEEEeCCCH---------HHHHhcCCCcCCE
Confidence 5899999999999999999999999998887655 1211 1110100 1122 23568999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+|-++.++-.. ..+.....+..+.-.+++
T Consensus 468 vvv~~~d~~~n-~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 468 LINAIDDPQTS-LQLVELVKEHFPHLQIIA 496 (621)
T ss_pred EEEEeCCHHHH-HHHHHHHHHhCCCCeEEE
Confidence 99998765533 222233333334434554
No 393
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=73.91 E-value=41 Score=30.13 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=39.0
Q ss_pred eCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEec--ccchhHHHHHHHHHHcCceeEEec
Q psy17416 83 PAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNR--IHGLIGQAWAMIFASAGYKVSLYD 144 (290)
Q Consensus 83 ~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nr--i~G~~g~~ia~~~~~~G~~V~l~d 144 (290)
.+..|.|+++.++.++++..|-.|+. .|+||| .|- ++-.+|. -.++...|.++.-+|
T Consensus 54 ~~~tThPevv~Av~~~v~e~g~ep~v--gd~pg~-~st~~vlk~~Gi--~dla~~~~~~iv~F~ 112 (293)
T COG2006 54 APCTTHPEVVAAVAEVVKEAGGEPVV--GDSPGF-GSTSGVLKTTGI--LDLAEALGLEIVNFD 112 (293)
T ss_pred CCCccCHHHHHHHHHHHHHhCCcceE--ecCCCC-ccHHHHHHHhCH--HHHHHHcCCceeeec
Confidence 45678999999999999999999997 589998 221 1222222 233344577666555
No 394
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=73.63 E-value=3.9 Score=35.54 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=28.3
Q ss_pred eEEecccchhHHHHHHHHHHcCceeEEecCC
Q psy17416 116 FALNRIHGLIGQAWAMIFASAGYKVSLYDVL 146 (290)
Q Consensus 116 f~~nri~G~~g~~ia~~~~~~G~~V~l~d~~ 146 (290)
|+.|+=.|.||..+|..++..|++|++++++
T Consensus 19 ~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 19 GITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred eecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 7899999999999999999999999988754
No 395
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=73.63 E-value=5.1 Score=35.91 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=24.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQ 149 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~ 149 (290)
.|.+|+.++..+.+.|++|...+++++.
T Consensus 9 ~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 36 (328)
T TIGR03466 9 TGFVGSAVVRLLLEQGEEVRVLVRPTSD 36 (328)
T ss_pred ccchhHHHHHHHHHCCCEEEEEEecCcc
Confidence 4788999999999999999999998654
No 396
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=73.55 E-value=17 Score=30.00 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=60.1
Q ss_pred HHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchH
Q psy17416 129 WAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ 208 (290)
Q Consensus 129 ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~ 208 (290)
+...+...|++|.+++-+++.++++.+.+++.+....--|...++++..+. +. ....+. -+++|+|+.+.....
T Consensus 40 l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~-~~--i~~~I~--~~~pdiv~vglG~Pk- 113 (172)
T PF03808_consen 40 LLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEE-EA--IINRIN--ASGPDIVFVGLGAPK- 113 (172)
T ss_pred HHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhH-HH--HHHHHH--HcCCCEEEEECCCCH-
Confidence 334455678999999999999999999888876543333444443321111 00 011222 258999999987554
Q ss_pred HHHHHHHHHhhhCCCCcEEEeCCCCc
Q psy17416 209 IKHQVYRAIDIFMSSNTILSSSTSSF 234 (290)
Q Consensus 209 ~k~~~~~~l~~~~~~~~ii~s~ts~~ 234 (290)
-..++.++...++...++ +...++
T Consensus 114 -QE~~~~~~~~~l~~~v~i-~vG~~~ 137 (172)
T PF03808_consen 114 -QERWIARHRQRLPAGVII-GVGGAF 137 (172)
T ss_pred -HHHHHHHHHHHCCCCEEE-EECchh
Confidence 235557788888887444 333333
No 397
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=73.34 E-value=34 Score=29.88 Aligned_cols=83 Identities=19% Similarity=0.132 Sum_probs=49.2
Q ss_pred HHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-CCchHh----hcccCcEEEEcc
Q psy17416 129 WAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-TPVLRE----CLEDAIFIQESV 203 (290)
Q Consensus 129 ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~l~~----~l~~aDlVieav 203 (290)
++..++..|++|+.+|.+++.++.|.++.... |.. .++++ ..+..+ .-...|+|+..-
T Consensus 58 ~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~-------g~~----------~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 58 TAIKLAELGHQVILCDLSAEMIQRAKQAAEAK-------GVS----------DNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc-------CCc----------cceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45566777999999999999998887754431 111 11111 112111 113467777443
Q ss_pred c-cchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 204 P-EILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 204 p-e~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
. +.+.-...+++++.+.++|+..++
T Consensus 121 vl~~~~~~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 2 111123477889999999998775
No 398
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=73.21 E-value=8.1 Score=33.20 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
+-+|..+|..+++.|++|.+.+++.+.+++..+.+.+
T Consensus 6 ~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~ 42 (241)
T PF13561_consen 6 SGIGRAIARALAEEGANVILTDRNEEKLADALEELAK 42 (241)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHH
Confidence 4689999999999999999999999987666665544
No 399
>PRK05086 malate dehydrogenase; Provisional
Probab=73.08 E-value=6.9 Score=35.71 Aligned_cols=87 Identities=11% Similarity=0.047 Sum_probs=50.2
Q ss_pred CcHHhhcccCcEEEEcccC--------------ChHHHHHHHHHHHhhcCCCcEE--eecCCCCChHHHh----cccCC-
Q psy17416 2 PVLRECLEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLS----EHSTH- 60 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e--------------~~~~K~~~~~~~~~~~~~~~i~--~snts~~~~~~l~----~~~~~- 60 (290)
+|+.++++++|+||=|.-- |.++=+++...+.+.+ +++++ .||-...-..-+. .....
T Consensus 61 ~d~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvsNP~D~~t~~~~~~~~~~sg~p 139 (312)
T PRK05086 61 EDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIITNPVNTTVAIAAEVLKKAGVYD 139 (312)
T ss_pred CCHHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchHHHHHHHHHHHHHhcCCC
Confidence 4777899999999987654 2335567778888885 55533 3444332222322 33333
Q ss_pred CCceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEE
Q psy17416 61 RSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVT 108 (290)
Q Consensus 61 ~~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~ 108 (290)
++|++|+- + -++......+++.+|..|-.
T Consensus 140 ~~rvig~~------------------~-Lds~R~~~~ia~~l~~~~~~ 168 (312)
T PRK05086 140 KNKLFGVT------------------T-LDVIRSETFVAELKGKQPGE 168 (312)
T ss_pred HHHEEeee------------------c-HHHHHHHHHHHHHhCCChhh
Confidence 37777763 1 23344555566677764433
No 400
>PRK09620 hypothetical protein; Provisional
Probab=73.01 E-value=3.9 Score=35.60 Aligned_cols=30 Identities=27% Similarity=0.155 Sum_probs=27.6
Q ss_pred eEEecccchhHHHHHHHHHHcCceeEEecC
Q psy17416 116 FALNRIHGLIGQAWAMIFASAGYKVSLYDV 145 (290)
Q Consensus 116 f~~nri~G~~g~~ia~~~~~~G~~V~l~d~ 145 (290)
|+.||=.|.||..+|..+...|++|++++.
T Consensus 22 ~itN~SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 22 GHTNMAKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred EecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 789999999999999999999999987763
No 401
>PRK07589 ornithine cyclodeaminase; Validated
Probab=72.96 E-value=14 Score=34.38 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=45.1
Q ss_pred CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHH
Q psy17416 137 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRA 216 (290)
Q Consensus 137 G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~ 216 (290)
--+|.+|+++++..++..+++++ .+ -.+...++.++++++||+|+-|++..-. ..++.
T Consensus 154 i~~V~v~~r~~~~a~~~~~~~~~-------~~------------~~v~~~~~~~~av~~ADIIvtaT~S~~~--~Pvl~- 211 (346)
T PRK07589 154 IEEIRLYDIDPAATAKLARNLAG-------PG------------LRIVACRSVAEAVEGADIITTVTADKTN--ATILT- 211 (346)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHh-------cC------------CcEEEeCCHHHHHhcCCEEEEecCCCCC--Cceec-
Confidence 34899999999988766654432 01 1233467899999999999999975320 02222
Q ss_pred HhhhCCCCcEEEe
Q psy17416 217 IDIFMSSNTILSS 229 (290)
Q Consensus 217 l~~~~~~~~ii~s 229 (290)
.+.+++|+.|..
T Consensus 212 -~~~lkpG~hV~a 223 (346)
T PRK07589 212 -DDMVEPGMHINA 223 (346)
T ss_pred -HHHcCCCcEEEe
Confidence 135678886653
No 402
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=72.96 E-value=6.3 Score=36.05 Aligned_cols=86 Identities=7% Similarity=-0.046 Sum_probs=55.7
Q ss_pred CcHHhhcccCcEEEEccc-------C-------ChHHHHHHHHHHHhhcCCCcE--EeecCCCCChHHHhcc-----cCC
Q psy17416 2 PVLRECLEDAIFIQESVP-------E-------ILQIKHQVYRAIDIFMSSNTI--LSSSTSSFLPSVLSEH-----STH 60 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~-------e-------~~~~K~~~~~~~~~~~~~~~i--~~snts~~~~~~l~~~-----~~~ 60 (290)
+|.+++++|||+|+=+.- . |.++=+++-.+|.+.++++++ ++|| |+.-++-. .+.
T Consensus 52 ~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~~i~~~a~~~~ivivvtN----PvDv~t~v~~~~~sg~ 127 (313)
T TIGR01756 52 TKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGN----PVNTNCLVAMLHAPKL 127 (313)
T ss_pred CCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC----chHHHHHHHHHHcCCC
Confidence 577789999999985331 1 334567788889999988773 4444 55444332 334
Q ss_pred CCceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 61 RSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 61 ~~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
|.+++ |..|.-++.+.-..+++++|-.|-.|
T Consensus 128 p~~vi------------------g~gt~LDsaR~r~~la~~l~v~~~~V 158 (313)
T TIGR01756 128 SAENF------------------SSLCMLDHNRAVSRIASKLKVPVDHI 158 (313)
T ss_pred CHHHE------------------EecccHHHHHHHHHHHHHhCcChhhe
Confidence 43333 34577778888888888898655443
No 403
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=72.80 E-value=7.6 Score=34.96 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHcCce-eEEecCCHH
Q psy17416 122 HGLIGQAWAMIFASAGYK-VSLYDVLSE 148 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~-V~l~d~~~e 148 (290)
+|-.|++++..++..|.. |.+++++++
T Consensus 134 AGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 134 AGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 466778888888899986 999999974
No 404
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=72.56 E-value=19 Score=31.32 Aligned_cols=91 Identities=13% Similarity=0.022 Sum_probs=50.9
Q ss_pred HHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-CCchH------hhcccCcEEEE-
Q psy17416 130 AMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-TPVLR------ECLEDAIFIQE- 201 (290)
Q Consensus 130 a~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~l~------~~l~~aDlVie- 201 (290)
+..+++.|++|+.+|.++..++.+.+........ .+.+..... .-.+|++ ..|+- +.+...|+|.+
T Consensus 58 ~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~-~~~~~~~~~-----~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDr 131 (226)
T PRK13256 58 MLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEV-IHGNDYKLY-----KGDDIEIYVADIFNLPKIANNLPVFDIWYDR 131 (226)
T ss_pred HHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcce-eccccccee-----ccCceEEEEccCcCCCccccccCCcCeeeee
Confidence 4567889999999999999998876521100000 000000000 0011111 12221 11345688776
Q ss_pred ----ccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 202 ----SVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 202 ----avpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|+|. +.+....+.+.+.+++++.+.
T Consensus 132 a~~~Alpp--~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 132 GAYIALPN--DLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred hhHhcCCH--HHHHHHHHHHHHHhCCCcEEE
Confidence 6774 448899999999999976544
No 405
>KOG1502|consensus
Probab=72.49 E-value=6 Score=36.34 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=44.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|.-+...|+..||.|+.--|+++.-.+. +.+++ ++. .-.. +. -..+.+.-..++.+++++||.||-
T Consensus 15 sGfIgswivk~LL~rGY~V~gtVR~~~~~k~~-~~L~~-l~~-----a~~~-l~--l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 15 SGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKT-EHLRK-LEG-----AKER-LK--LFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred chHHHHHHHHHHHhCCCEEEEEEcCcchhhhH-HHHHh-ccc-----Cccc-ce--EEeccccccchHHHHHhCCCEEEE
Confidence 46667888889999999999999999873331 11111 110 0000 00 011333445678889999999995
Q ss_pred cc
Q psy17416 202 SV 203 (290)
Q Consensus 202 av 203 (290)
+.
T Consensus 85 ~A 86 (327)
T KOG1502|consen 85 TA 86 (327)
T ss_pred eC
Confidence 43
No 406
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=72.38 E-value=6.8 Score=37.58 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=42.6
Q ss_pred CCcHHhhcccCcEEEEcccCC----------h------------------------HHHHHHHHHHHhhcCCCcEEe--e
Q psy17416 1 TPVLRECLEDAIFIQESVPEI----------L------------------------QIKHQVYRAIDIFMSSNTILS--S 44 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~----------~------------------------~~K~~~~~~~~~~~~~~~i~~--s 44 (290)
|+|++||++|||+||-++.-- + .+=+++-+++++.| ||+++- |
T Consensus 65 Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~lin~t 143 (437)
T cd05298 65 TTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWILNYS 143 (437)
T ss_pred ECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 689999999999999775321 1 23357788999998 666443 4
Q ss_pred cCCCCChHHHhcccC--CC-Cceeeec
Q psy17416 45 STSSFLPSVLSEHST--HR-SQFIVAH 68 (290)
Q Consensus 45 nts~~~~~~l~~~~~--~~-~r~~g~h 68 (290)
| |...+...+. .| .|++|+.
T Consensus 144 N----P~~~vt~~~~~~~~~~kviGlC 166 (437)
T cd05298 144 N----PAAIVAEALRRLFPNARILNIC 166 (437)
T ss_pred C----cHHHHHHHHHHHCCCCCEEEEC
Confidence 4 5555544443 33 6888875
No 407
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=72.38 E-value=17 Score=32.73 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=59.1
Q ss_pred CcHHhhccc---CcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCC--hHHHhcccCCCCceeeeccCCCCCCC
Q psy17416 2 PVLRECLED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTHRSQFIVAHPVNPPYFI 76 (290)
Q Consensus 2 ~~l~~~~~~---~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~--~~~l~~~~~~~~r~~g~hf~~P~~~~ 76 (290)
+++++.++. +|+|+=++|-+-.++ +++..+-..++++.++...+++.+ ..+++..+... |.+|.- ++.+
T Consensus 48 ~~~~e~~~~~~~~dvvi~~v~~~~~~~-~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~d-apvs 121 (301)
T PRK09599 48 DSLEELVAKLPAPRVVWLMVPAGEITD-ATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVD-VGTS 121 (301)
T ss_pred CCHHHHHhhcCCCCEEEEEecCCcHHH-HHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEe-CCCC
Confidence 356665554 699999999875554 345666666677665553332222 22455544322 455542 2222
Q ss_pred --------CeeeEeeCCCCCHHHHHHHHHHHHHhCC----ccEEE
Q psy17416 77 --------PLVEIVPAAWTSERVITRTREIMTEIGM----KPVTL 109 (290)
Q Consensus 77 --------~lvEiv~~~~t~~~~~~~~~~~~~~lgk----~~v~v 109 (290)
.+ =++.| .++++++.+..+++.+++ ..+.+
T Consensus 122 G~~~~a~~g~-~~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~ 163 (301)
T PRK09599 122 GGVWGLERGY-CLMIG--GDKEAVERLEPIFKALAPRAEDGYLHA 163 (301)
T ss_pred cCHHHHhcCC-eEEec--CCHHHHHHHHHHHHHHcccccCCeEeE
Confidence 12 23333 578999999999999998 55555
No 408
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=71.86 E-value=8.1 Score=33.15 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=33.6
Q ss_pred HHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecC
Q psy17416 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 46 (290)
Q Consensus 4 l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snt 46 (290)
+++-++++|+||+| .++.+.|..++....+......|.++.+
T Consensus 111 ~~~~~~~~DvVI~a-~D~~~~r~~l~~~~~~~~~~p~I~~~~~ 152 (212)
T PRK08644 111 IEELFKDCDIVVEA-FDNAETKAMLVETVLEHPGKKLVAASGM 152 (212)
T ss_pred HHHHHcCCCEEEEC-CCCHHHHHHHHHHHHHhCCCCEEEeehh
Confidence 44568899999999 7999999999988888766666776543
No 409
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=71.50 E-value=80 Score=28.68 Aligned_cols=89 Identities=17% Similarity=0.135 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHH-HHHHHHHHHHHHHHHcC
Q psy17416 90 RVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIE-NAKNTIQHTLQDYHQKG 168 (290)
Q Consensus 90 ~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~-~a~~~i~~~~~~~~~~g 168 (290)
+++..+.-+.+..|. +.+-.-.|++.-.-+...++++..++..|.+|.+......... ...+..+ +.
T Consensus 133 Q~LaDl~Ti~e~~g~----l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~-------~~- 200 (301)
T TIGR00670 133 QTLLDLYTIYEEFGR----LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELK-------AK- 200 (301)
T ss_pred HHHHHHHHHHHHhCC----CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHH-------Hc-
Confidence 555555555555553 1122223443211134467888888889999988775433211 1111111 11
Q ss_pred CCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 169 CLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 169 ~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+ ..++.++|+++++++||+|.-
T Consensus 201 ---G--------~~v~~~~d~~~a~~~aDvvyt 222 (301)
T TIGR00670 201 ---G--------IKVRETESLEEVIDEADVLYV 222 (301)
T ss_pred ---C--------CEEEEECCHHHHhCCCCEEEE
Confidence 1 235568999999999999875
No 410
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=71.36 E-value=16 Score=34.47 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=43.4
Q ss_pred eeEeeCCCCC-HHHHHHHHHHHHH---h-CCccEEEecccee--------eEEecccchhHHHHHHHHHHcCceeEEecC
Q psy17416 79 VEIVPAAWTS-ERVITRTREIMTE---I-GMKPVTLTTEIRG--------FALNRIHGLIGQAWAMIFASAGYKVSLYDV 145 (290)
Q Consensus 79 vEiv~~~~t~-~~~~~~~~~~~~~---l-gk~~v~v~~d~~g--------f~~nri~G~~g~~ia~~~~~~G~~V~l~d~ 145 (290)
-|.-.|..-+ ++.+..+.+.+.. + ||. +.+. ..|. |+.|+=.|.||..+|..+...|++|+++..
T Consensus 156 ~~~g~g~~~~~~~i~~~v~~~~~~~~~~~~~~-vlit-~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g 233 (390)
T TIGR00521 156 GDEGKGRLAEPETIVKAAEREFSPKEDLEGKR-VLIT-AGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITG 233 (390)
T ss_pred ccccCCCCCCHHHHHHHHHHHHhhccccCCce-EEEe-cCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCC
Confidence 3433343334 5666777766533 3 454 4442 2222 789999999999999999999999988653
No 411
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=70.88 E-value=9.6 Score=33.43 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=60.6
Q ss_pred chhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 123 GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
|.+| ++|..+.+.|+ +..+++....--++|... ..-..+.+++..+.++++++++||++|+-
T Consensus 16 gNIG-~vARaMKNfGl~eL~LV~Pr~~~~eeA~a~----------------A~gA~dile~A~i~~tL~eAl~d~~~v~a 78 (242)
T COG0565 16 GNIG-SVARAMKNFGLSELRLVNPRAGLDEEARAL----------------AAGARDILENAKIVDTLEEALADCDLVVA 78 (242)
T ss_pred ccHH-HHHHHHHhCCcceEEEECCCCCCCHHHHHH----------------hccchhhhccCeeecCHHHHhcCCCEEEE
Confidence 4444 45788888897 577777544211222220 01234566777889999999999999996
Q ss_pred ccccchHHHHH------HHHHHhhhCC--CCcEEE-eCCCCcCHHHHhcc
Q psy17416 202 SVPEILQIKHQ------VYRAIDIFMS--SNTILS-SSTSSFLPSVLSEH 242 (290)
Q Consensus 202 avpe~~~~k~~------~~~~l~~~~~--~~~ii~-s~ts~~~~~~la~~ 242 (290)
+.--+-+..+. .-..+.+..+ +-+++. =-..|+.-++++..
T Consensus 79 Ttar~r~~~~~~~~P~e~~~~l~~~~~~~~vAlvFGRE~~GLtNeEl~~c 128 (242)
T COG0565 79 TTARSRDLLRPLRTPREAAPELLEKAKGGKVALVFGRERVGLTNEELALC 128 (242)
T ss_pred eccccCcccccccCHHHHHHHHHHHhcCCCeEEEECCccCCCCHHHHHhh
Confidence 65433332222 2234444443 223444 35678888888643
No 412
>PLN02780 ketoreductase/ oxidoreductase
Probab=70.81 E-value=8.2 Score=35.20 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=32.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.+.+|.++|..+++.|++|.+.+++++.+++..+.++.
T Consensus 62 s~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 62 TDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQS 99 (320)
T ss_pred CcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
Confidence 46789999999999999999999999988776665543
No 413
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=70.51 E-value=23 Score=32.36 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=29.2
Q ss_pred CCchHhhcccCcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEE
Q psy17416 186 TPVLRECLEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTIL 227 (290)
Q Consensus 186 ~~~l~~~l~~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii 227 (290)
++++.+++++||+||.+.-- |..+-+++..+|.++.++++++
T Consensus 51 ~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~~i~~~a~~~~iv 106 (313)
T TIGR01756 51 TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKV 106 (313)
T ss_pred cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhCCCCeEE
Confidence 56776679999999975432 2335566677888888776633
No 414
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=70.30 E-value=44 Score=30.06 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHc----Cc-------eeEEecCCHHHHHH--H
Q psy17416 87 TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASA----GY-------KVSLYDVLSEQIEN--A 153 (290)
Q Consensus 87 t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~----G~-------~V~l~d~~~e~l~~--a 153 (290)
|.--+++.+..-++..|| ++ +|.. ++++- +|.-|..++.++... |. +++++|+..--.+. -
T Consensus 4 Ta~V~lAgllnAlk~~g~-~l---~d~~-iv~~G-AGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~ 77 (279)
T cd05312 4 TAAVALAGLLAALRITGK-PL---SDQR-ILFLG-AGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKD 77 (279)
T ss_pred HHHHHHHHHHHHHHHhCC-Ch---hhcE-EEEEC-cCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCc
Confidence 444556666677777776 32 2433 22221 688888888777654 76 77888876321110 0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc--cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE-eC
Q psy17416 154 KNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE--DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS-SS 230 (290)
Q Consensus 154 ~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~--~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~-s~ 230 (290)
+...+..+. +. .. . ....++.++++ ++|++|=+--..-...+++++.+.+.+..-.|+. ||
T Consensus 78 l~~~~~~~a---~~---~~---------~-~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN 141 (279)
T cd05312 78 LTPFKKPFA---RK---DE---------E-KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSN 141 (279)
T ss_pred chHHHHHHH---hh---cC---------c-ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence 111222211 11 00 0 12368889999 8899986542223457899999998887776666 55
Q ss_pred CC---CcCHHHHhccCCCCCcEEEeccCCCC
Q psy17416 231 TS---SFLPSVLSEHSTHRSQFIVAHPVNPP 258 (290)
Q Consensus 231 ts---~~~~~~la~~~~~~~r~ig~Hf~~p~ 258 (290)
-. -...++..+......-|...-||.|+
T Consensus 142 Pt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv 172 (279)
T cd05312 142 PTSKAECTAEDAYKWTDGRALFASGSPFPPV 172 (279)
T ss_pred cCCccccCHHHHHHhhcCCEEEEeCCCCCCe
Confidence 44 34555555544333233333455555
No 415
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=69.51 E-value=5.5 Score=34.57 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=27.7
Q ss_pred eEEecccchhHHHHHHHHHHcCceeEEecC
Q psy17416 116 FALNRIHGLIGQAWAMIFASAGYKVSLYDV 145 (290)
Q Consensus 116 f~~nri~G~~g~~ia~~~~~~G~~V~l~d~ 145 (290)
|+.|+=.|.||.++|..++..|++|++.++
T Consensus 18 ~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 18 SITNHSTGHLGKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred eecCCcccHHHHHHHHHHHHCCCEEEEEcC
Confidence 789998999999999999999999998874
No 416
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=69.40 E-value=81 Score=28.63 Aligned_cols=117 Identities=12% Similarity=0.072 Sum_probs=64.5
Q ss_pred HHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-CCchHhhc----ccCcEEEEccc
Q psy17416 130 AMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-TPVLRECL----EDAIFIQESVP 204 (290)
Q Consensus 130 a~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~l~~~l----~~aDlVieavp 204 (290)
+..++..|.+|+.+|.+++.++.+.+..+.. |. . ++++ ..|..+.. ...|+|+.--|
T Consensus 188 sl~la~~~~~V~gvD~s~~av~~A~~n~~~~-------~l-~----------~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 188 GLHCATPGMQLTGIEISAEAIACAKQSAAEL-------GL-T----------NVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHHHHHHHHc-------CC-C----------ceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 3445567889999999999998887654331 21 0 1111 12222211 23699987766
Q ss_pred cchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEe
Q psy17416 205 EILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIV 267 (290)
Q Consensus 205 e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv 267 (290)
.......+.+.|.+.-+...+.+|........+++.. ..-++--+.+++--+..+-||.+
T Consensus 250 -r~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l--~~y~~~~~~~~DmFP~T~HvE~v 309 (315)
T PRK03522 250 -RRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL--PGYRIERVQLFDMFPHTAHYEVL 309 (315)
T ss_pred -CCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc--cCcEEEEEEEeccCCCCCeEEEE
Confidence 3344556666676654455555565554445555443 22334444555544445556655
No 417
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=69.27 E-value=45 Score=33.25 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=29.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.|.+|+.++..+++.|++|.+++++.+.+....+.+
T Consensus 89 TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l 124 (576)
T PLN03209 89 TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSV 124 (576)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Confidence 578899999999999999999999998776554433
No 418
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=69.16 E-value=11 Score=31.09 Aligned_cols=32 Identities=13% Similarity=-0.003 Sum_probs=28.0
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhh
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIF 35 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~ 35 (290)
++++-++++|+||+| .++.+.|+.++..+.+.
T Consensus 81 ~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 81 NLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred hHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 355678999999999 89999999999998887
No 419
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=69.10 E-value=8.1 Score=29.42 Aligned_cols=82 Identities=13% Similarity=0.096 Sum_probs=44.3
Q ss_pred cchhHHHHHHHHHHc----Ccee-EEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc--
Q psy17416 122 HGLIGQAWAMIFASA----GYKV-SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE-- 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~----G~~V-~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~-- 194 (290)
.|.+|++++..+.+. ++++ .+++++ ..+..... ........++++++.+.
T Consensus 2 ~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 58 (117)
T PF03447_consen 2 FGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWA----------------------ASFPDEAFTTDLEELIDDP 58 (117)
T ss_dssp -SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHH----------------------HHHTHSCEESSHHHHHTHT
T ss_pred CCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhh----------------------hhcccccccCCHHHHhcCc
Confidence 488999998888765 4554 456666 21111100 01122335678887777
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 231 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 231 (290)
+.|+||||.+.+. -.+. +.+.+..+.-++|.+
T Consensus 59 ~~dvvVE~t~~~~--~~~~---~~~~L~~G~~VVt~n 90 (117)
T PF03447_consen 59 DIDVVVECTSSEA--VAEY---YEKALERGKHVVTAN 90 (117)
T ss_dssp T-SEEEE-SSCHH--HHHH---HHHHHHTTCEEEES-
T ss_pred CCCEEEECCCchH--HHHH---HHHHHHCCCeEEEEC
Confidence 8999999966433 2333 344455666555443
No 420
>KOG1495|consensus
Probab=68.69 E-value=14 Score=33.14 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=44.7
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
.|..|.+.|..+...|+ ++.++|.+++.+...+=.++.. .+.-...++....|+. +.+++++|
T Consensus 28 ~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~--------------s~f~~~~~V~~~~Dy~-~sa~S~lv 92 (332)
T KOG1495|consen 28 VGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHG--------------SAFLSTPNVVASKDYS-VSANSKLV 92 (332)
T ss_pred cchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccc--------------cccccCCceEecCccc-ccCCCcEE
Confidence 58888888888877775 7899999998654332222211 1112234566667777 57899999
Q ss_pred EEccc
Q psy17416 200 QESVP 204 (290)
Q Consensus 200 ieavp 204 (290)
|...-
T Consensus 93 IiTAG 97 (332)
T KOG1495|consen 93 IITAG 97 (332)
T ss_pred EEecC
Confidence 97654
No 421
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=68.51 E-value=7.1 Score=32.83 Aligned_cols=32 Identities=34% Similarity=0.325 Sum_probs=24.8
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCC
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVL 146 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~ 146 (290)
=|+.|+=.|.||..+|..+...|++|+++--.
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~ 52 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGP 52 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecC
Confidence 37899999999999999999999999876543
No 422
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=68.30 E-value=13 Score=28.49 Aligned_cols=76 Identities=20% Similarity=0.114 Sum_probs=43.5
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEc
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQES 202 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlViea 202 (290)
+.+|..+...+.+.|++|..++.....+ .++....++.|.-...|+++.+
T Consensus 13 ~~~g~~v~~~l~~~G~~v~~Vnp~~~~i------------------------------~G~~~y~sl~e~p~~iDlavv~ 62 (116)
T PF13380_consen 13 GKFGYRVLRNLKAAGYEVYPVNPKGGEI------------------------------LGIKCYPSLAEIPEPIDLAVVC 62 (116)
T ss_dssp TSHHHHHHHHHHHTT-EEEEESTTCSEE------------------------------TTEE-BSSGGGCSST-SEEEE-
T ss_pred CChHHHHHHHHHhCCCEEEEECCCceEE------------------------------CcEEeeccccCCCCCCCEEEEE
Confidence 4566777777777888888776544211 2334567777633789999999
Q ss_pred cccchHHHHHHHHHHhhhCCCCcEEEeC
Q psy17416 203 VPEILQIKHQVYRAIDIFMSSNTILSSS 230 (290)
Q Consensus 203 vpe~~~~k~~~~~~l~~~~~~~~ii~s~ 230 (290)
+|... -.++++++...=....++.++
T Consensus 63 ~~~~~--~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 63 VPPDK--VPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp S-HHH--HHHHHHHHHHHT-SEEEE-TT
T ss_pred cCHHH--HHHHHHHHHHcCCCEEEEEcc
Confidence 99444 567888777653333333344
No 423
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=68.25 E-value=26 Score=32.41 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=24.1
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
|-+|....+.....|.+|+.+|++++.++.|++
T Consensus 176 GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 176 GGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208 (339)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence 444444444444578999999999999888877
No 424
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=68.07 E-value=35 Score=29.34 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCC--CCh--hhhhccccc-CCchHh----hccc
Q psy17416 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGS--LSP--EEQFGLISG-TPVLRE----CLED 195 (290)
Q Consensus 125 ~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~--~~~--~~~~~~i~~-~~~l~~----~l~~ 195 (290)
.|+. +..++..|++|+.+|.++..++++... .+..... ... .....++++ ..|+.+ ....
T Consensus 48 ~G~d-a~~LA~~G~~V~avD~s~~Ai~~~~~~----------~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 48 KSLD-MLWLAEQGHEVLGVELSELAVEQFFAE----------NGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred ChHh-HHHHHhCCCeEEEEccCHHHHHHHHHH----------cCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 3444 455678999999999999999886431 1111000 000 000012221 122111 1223
Q ss_pred CcEEEE-----ccccchHHHHHHHHHHhhhCCCCc
Q psy17416 196 AIFIQE-----SVPEILQIKHQVYRAIDIFMSSNT 225 (290)
Q Consensus 196 aDlVie-----avpe~~~~k~~~~~~l~~~~~~~~ 225 (290)
.|+|++ ++| .+.+...++.+.+.++++.
T Consensus 117 fd~v~D~~~~~~l~--~~~R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 117 VDAVYDRAALIALP--EEMRERYVQQLAALLPAGC 149 (218)
T ss_pred eeEEEehHhHhhCC--HHHHHHHHHHHHHHcCCCC
Confidence 477774 455 5568899999999999995
No 425
>PRK08339 short chain dehydrogenase; Provisional
Probab=68.04 E-value=11 Score=32.97 Aligned_cols=37 Identities=30% Similarity=0.339 Sum_probs=30.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
.+-+|.+++..+++.|++|.+.+++++.+++..+.+.
T Consensus 17 s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 53 (263)
T PRK08339 17 SKGIGFGVARVLARAGADVILLSRNEENLKKAREKIK 53 (263)
T ss_pred CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 4578999999999999999999999988776665443
No 426
>PRK05854 short chain dehydrogenase; Provisional
Probab=67.99 E-value=15 Score=33.13 Aligned_cols=37 Identities=27% Similarity=0.147 Sum_probs=31.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
.+-+|.+++..+++.|++|++.+++.+..+++.+.+.
T Consensus 23 s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~ 59 (313)
T PRK05854 23 SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIR 59 (313)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 3578999999999999999999999988877766554
No 427
>PRK06199 ornithine cyclodeaminase; Validated
Probab=67.70 E-value=73 Score=29.97 Aligned_cols=89 Identities=8% Similarity=0.105 Sum_probs=53.7
Q ss_pred cchhHHHHHHHHHH-c-C-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFAS-A-G-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~-~-G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
.|..++.-...+.. . + -+|.+|+++++..++..++++..+. |. ..+....+.++++++||+
T Consensus 163 ~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~-----------~~v~~~~s~~eav~~ADI 226 (379)
T PRK06199 163 PGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI-----------TNVEVVDSIEEVVRGSDI 226 (379)
T ss_pred CcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC-----------ceEEEeCCHHHHHcCCCE
Confidence 45555554444443 2 2 3899999999988766654443210 00 023446889999999999
Q ss_pred EEEccccch--HHHHHHHHHHhhhCCCCcEEE
Q psy17416 199 IQESVPEIL--QIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 199 Vieavpe~~--~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|+-|++..- ..+..++. .+.+++++.|.
T Consensus 227 VvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~ 256 (379)
T PRK06199 227 VTYCNSGETGDPSTYPYVK--REWVKPGAFLL 256 (379)
T ss_pred EEEccCCCCCCCCcCcEec--HHHcCCCcEEe
Confidence 999986432 11223332 23567888765
No 428
>PRK05442 malate dehydrogenase; Provisional
Probab=67.53 E-value=5.1 Score=36.87 Aligned_cols=84 Identities=8% Similarity=-0.079 Sum_probs=52.1
Q ss_pred cHHhhcccCcEEEEccc--------------CChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhccc-----CCC-C
Q psy17416 3 VLRECLEDAIFIQESVP--------------EILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHS-----THR-S 62 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~--------------e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~-----~~~-~ 62 (290)
+..++++|||+||=+.- .|.++=+++..+|.+.+++++++..-| -|+.-++..+ ..| +
T Consensus 73 ~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v~~k~s~g~p~~ 150 (326)
T PRK05442 73 DPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALIAMKNAPDLPAE 150 (326)
T ss_pred ChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHHHHHHcCCCCHH
Confidence 45678999999985432 123455677788888888888665544 3555444333 222 4
Q ss_pred ceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 63 QFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 63 r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
|++|+ |.-++.+.-..+++.++-.|-
T Consensus 151 rViG~-------------------t~LDs~R~r~~la~~l~v~~~ 176 (326)
T PRK05442 151 NFTAM-------------------TRLDHNRALSQLAAKAGVPVA 176 (326)
T ss_pred HEEee-------------------eHHHHHHHHHHHHHHhCcChH
Confidence 44443 555666777777788886443
No 429
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=67.43 E-value=12 Score=32.57 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=31.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
.+.+|++++..++..|+.|.+.+++++.++++.+.++
T Consensus 9 s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~ 45 (259)
T PRK08340 9 SRGIGFNVARELLKKGARVVISSRNEENLEKALKELK 45 (259)
T ss_pred CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 4678999999999999999999999988776665543
No 430
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=66.74 E-value=22 Score=30.27 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=47.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.++..+...|++|...-+++... . .+.++ ..|... ....+.-..++.++++++|.||.
T Consensus 7 tG~~G~~v~~~L~~~~~~V~~l~R~~~~~-~-~~~l~-------~~g~~v-------v~~d~~~~~~l~~al~g~d~v~~ 70 (233)
T PF05368_consen 7 TGNQGRSVVRALLSAGFSVRALVRDPSSD-R-AQQLQ-------ALGAEV-------VEADYDDPESLVAALKGVDAVFS 70 (233)
T ss_dssp TSHHHHHHHHHHHHTTGCEEEEESSSHHH-H-HHHHH-------HTTTEE-------EES-TT-HHHHHHHHTTCSEEEE
T ss_pred ccHHHHHHHHHHHhCCCCcEEEEeccchh-h-hhhhh-------cccceE-------eecccCCHHHHHHHHcCCceEEe
Confidence 47899999999999999999998887321 0 11111 122110 00111112457778999999999
Q ss_pred ccccc----hHHHHHHHH
Q psy17416 202 SVPEI----LQIKHQVYR 215 (290)
Q Consensus 202 avpe~----~~~k~~~~~ 215 (290)
+++.. .+..+.+.+
T Consensus 71 ~~~~~~~~~~~~~~~li~ 88 (233)
T PF05368_consen 71 VTPPSHPSELEQQKNLID 88 (233)
T ss_dssp ESSCSCCCHHHHHHHHHH
T ss_pred ecCcchhhhhhhhhhHHH
Confidence 99943 444444443
No 431
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=66.69 E-value=49 Score=27.65 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=46.2
Q ss_pred HHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcccc---c
Q psy17416 130 AMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPE---I 206 (290)
Q Consensus 130 a~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe---~ 206 (290)
+..++..|++|+.+|.+++.++.+.+.... .+.. +.. ....+. ..++. ...|+|+.+.+= +
T Consensus 45 a~~la~~g~~V~~iD~s~~~l~~a~~~~~~-------~~~~---v~~--~~~d~~-~~~~~---~~fD~I~~~~~~~~~~ 108 (195)
T TIGR00477 45 SLYLSLAGYDVRAWDHNPASIASVLDMKAR-------ENLP---LRT--DAYDIN-AAALN---EDYDFIFSTVVFMFLQ 108 (195)
T ss_pred HHHHHHCCCeEEEEECCHHHHHHHHHHHHH-------hCCC---cee--Eeccch-hcccc---CCCCEEEEecccccCC
Confidence 445556799999999999988877654332 1111 000 000000 00111 246888755331 1
Q ss_pred hHHHHHHHHHHhhhCCCCcE
Q psy17416 207 LQIKHQVYRAIDIFMSSNTI 226 (290)
Q Consensus 207 ~~~k~~~~~~l~~~~~~~~i 226 (290)
.+....+++++.+.++++..
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcE
Confidence 23456788999999999875
No 432
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=66.36 E-value=48 Score=32.23 Aligned_cols=102 Identities=10% Similarity=0.104 Sum_probs=62.1
Q ss_pred CCcHHhhcccCcEEEEcccC-------------ChHHHHHHHHHHHhhcCCCcEEeecCCCCChH---HHhccc------
Q psy17416 1 TPVLRECLEDAIFIQESVPE-------------ILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHS------ 58 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e-------------~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~---~l~~~~------ 58 (290)
|+|+++++++||++|=||+= |+.-=.+..++|.+.++++.++. .-|+.|++ ++...+
T Consensus 69 t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv-~~STvp~Gtt~~~~~~l~~~~~g 147 (473)
T PLN02353 69 STDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSKG 147 (473)
T ss_pred EcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEE-EeCCCCCChHHHHHHHHHhhCCC
Confidence 57888899999999999952 33345678888999998887643 44555655 232211
Q ss_pred ------CCCCcee-ee---ccCCCCCCCCeeeEeeCCCCC---HHHHHHHHHHHHHhCC-ccEEE
Q psy17416 59 ------THRSQFI-VA---HPVNPPYFIPLVEIVPAAWTS---ERVITRTREIMTEIGM-KPVTL 109 (290)
Q Consensus 59 ------~~~~r~~-g~---hf~~P~~~~~lvEiv~~~~t~---~~~~~~~~~~~~~lgk-~~v~v 109 (290)
..|||+. |- .|.+|+ =||-|..++ ++..+.+.++++.+-+ .++.+
T Consensus 148 ~~f~v~~~PErl~~G~a~~d~~~p~------riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~ 206 (473)
T PLN02353 148 INFQILSNPEFLAEGTAIEDLFKPD------RVLIGGRETPEGQKAVQALKDVYAHWVPEERIIT 206 (473)
T ss_pred CCeEEEECCCccCCCCcccccCCCC------EEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEe
Confidence 2344443 11 112222 244343332 5678889999998754 45544
No 433
>PRK07063 short chain dehydrogenase; Provisional
Probab=66.01 E-value=13 Score=32.25 Aligned_cols=37 Identities=35% Similarity=0.320 Sum_probs=31.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
.+.+|.+++..+++.|++|.+.+++++.+++..+.++
T Consensus 16 s~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~ 52 (260)
T PRK07063 16 AQGIGAAIARAFAREGAAVALADLDAALAERAAAAIA 52 (260)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 4678999999999999999999999888776665543
No 434
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=65.92 E-value=84 Score=28.76 Aligned_cols=156 Identities=13% Similarity=0.172 Sum_probs=74.8
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHH------------HHHHHHHHHHHHcCCCCCCCChhhhhcccccCCc
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAK------------NTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV 188 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~------------~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~ 188 (290)
+|.+|.+++..++..|. .++++|.+.-+....- .+.+-..+++.+.. ...........+.-...
T Consensus 7 aGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lN---p~v~V~~~~~~i~~~~~ 83 (312)
T cd01489 7 AGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFN---PNVKIVAYHANIKDPDF 83 (312)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHC---CCCeEEEEeccCCCccc
Confidence 68899999999998886 7888876543322211 11111111111110 00111111122221111
Q ss_pred hHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEec
Q psy17416 189 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVP 268 (290)
Q Consensus 189 l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~ 268 (290)
..+-+++.|+|+.|.- +.+.++.+ .++-.... -..|-+.+.+..- .+.-..+....+.-.++..++...+...|..
T Consensus 84 ~~~f~~~~DvVv~a~D-n~~ar~~i-n~~c~~~~-ip~I~~gt~G~~G-~v~vi~p~~t~c~~c~~~~~~~~~pictI~~ 159 (312)
T cd01489 84 NVEFFKQFDLVFNALD-NLAARRHV-NKMCLAAD-VPLIESGTTGFLG-QVQVIKKGKTECYECQPKETPKTFPVCTIRS 159 (312)
T ss_pred hHHHHhcCCEEEECCC-CHHHHHHH-HHHHHHCC-CCEEEEecCccee-EEEEEcCCCCCccCCCCCCCCCcCCcceecC
Confidence 2345789999999984 55553333 33222211 1233345544421 1111111111122222334445667888888
Q ss_pred CCCCCHHHHHHHHHHH
Q psy17416 269 AAWTSERVITRTREIM 284 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~ 284 (290)
.+......++.++.++
T Consensus 160 ~p~~~~hci~~a~~~f 175 (312)
T cd01489 160 TPSQPIHCIVWAKSLF 175 (312)
T ss_pred CCCCCEeehhHHHHHH
Confidence 8888887888777653
No 435
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=65.59 E-value=9.9 Score=34.63 Aligned_cols=86 Identities=12% Similarity=0.013 Sum_probs=55.3
Q ss_pred CcHHhhcccCcEEEEccc---------CCh-----HHHHHHHHHHHhhcCCCcEEeecCCCCChH--HHhcccCC-CCce
Q psy17416 2 PVLRECLEDAIFIQESVP---------EIL-----QIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTH-RSQF 64 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~---------e~~-----~~K~~~~~~~~~~~~~~~i~~snts~~~~~--~l~~~~~~-~~r~ 64 (290)
+|. +++++||+||=++. .++ ++=+++.+.|.+.+ |++++..+++..++. .+....+. |.|+
T Consensus 65 ~d~-~~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~~t~~~~~~~g~~~~~v 142 (309)
T cd05294 65 SDL-SDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVMTYKALKESGFDKNRV 142 (309)
T ss_pred CCH-HHhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHhcCCCHHHE
Confidence 454 46999999999885 122 44667777888887 577666666555544 23333333 4777
Q ss_pred eeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 65 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 65 ~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
+|+- |.-+.......+++++|..|-
T Consensus 143 iG~g------------------t~LDs~R~~~~la~~l~v~~~ 167 (309)
T cd05294 143 FGLG------------------THLDSLRFKVAIAKHFNVHIS 167 (309)
T ss_pred eecc------------------chHHHHHHHHHHHHHHCcChH
Confidence 7763 555566667777888886443
No 436
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=65.55 E-value=14 Score=31.95 Aligned_cols=36 Identities=28% Similarity=0.219 Sum_probs=30.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.|.+|..++..+++.|++|.+.+++++.++...+.+
T Consensus 19 ~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i 54 (255)
T PRK07523 19 SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESL 54 (255)
T ss_pred cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 578899999999999999999999988776555444
No 437
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=65.32 E-value=27 Score=31.17 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=25.3
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAK 154 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~ 154 (290)
+|-.+++++..+...|. +|.+++|+++..+...
T Consensus 130 aGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la 163 (272)
T PRK12550 130 SGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA 163 (272)
T ss_pred CcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 46667788888888886 6999999997665433
No 438
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=65.07 E-value=12 Score=34.66 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=40.5
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS 52 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~ 52 (290)
|+|+++++++||+|+=|+|-. .=+++++++.....++.++.|.|-++...
T Consensus 73 t~dl~eal~~ADiIIlAVPs~--~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 73 VPDLVEAAKGADILVFVIPHQ--FLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred ECCHHHHHhcCCEEEEECChH--HHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 479999999999999999754 34567888888888898888888766554
No 439
>PLN00016 RNA-binding protein; Provisional
Probab=64.88 E-value=14 Score=34.32 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=23.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQ 149 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~ 149 (290)
.|.+|..++..+...|++|+++++++..
T Consensus 65 tG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 65 HAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 3667888999999999999999998754
No 440
>KOG1370|consensus
Probab=64.83 E-value=30 Score=31.61 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=55.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHH-HHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQI-ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l-~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|-.|.+.|+.+...|..|.+-..+|-.. +.+++ + .+ .+.++++++.+|+++
T Consensus 222 YGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMe----------------G----------~~-V~tm~ea~~e~difV 274 (434)
T KOG1370|consen 222 YGDVGKGCAQALKGFGARVIVTEIDPICALQAAME----------------G----------YE-VTTLEEAIREVDIFV 274 (434)
T ss_pred cCccchhHHHHHhhcCcEEEEeccCchHHHHHHhh----------------c----------cE-eeeHHHhhhcCCEEE
Confidence 36778999999999999999999998642 32332 2 22 367888999999999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
-+.-- |--+..+.-..++.++|+.
T Consensus 275 TtTGc----~dii~~~H~~~mk~d~IvC 298 (434)
T KOG1370|consen 275 TTTGC----KDIITGEHFDQMKNDAIVC 298 (434)
T ss_pred EccCC----cchhhHHHHHhCcCCcEEe
Confidence 87652 2234455566789999886
No 441
>PLN02214 cinnamoyl-CoA reductase
Probab=64.81 E-value=25 Score=32.13 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=24.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQ 149 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~ 149 (290)
.|.+|+.++..+...|++|...+++.+.
T Consensus 19 tGfIG~~l~~~L~~~G~~V~~~~r~~~~ 46 (342)
T PLN02214 19 GGYIASWIVKILLERGYTVKGTVRNPDD 46 (342)
T ss_pred CcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence 5788999999999999999999988654
No 442
>PRK08605 D-lactate dehydrogenase; Validated
Probab=64.61 E-value=27 Score=32.08 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=39.8
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH--HHhccc
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHS 58 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~--~l~~~~ 58 (290)
++|++++++||+|+-++|-.-+.+.=+=..+-+.++++++|...+.+..+. .|.+.+
T Consensus 192 ~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL 250 (332)
T PRK08605 192 DTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDAL 250 (332)
T ss_pred CCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHH
Confidence 589999999999999999988887622244556678998665444443333 455554
No 443
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=64.49 E-value=28 Score=31.47 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=55.5
Q ss_pred HhhcccCcEEEEcccC--------------ChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhccc----C-CCCcee
Q psy17416 5 RECLEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHS----T-HRSQFI 65 (290)
Q Consensus 5 ~~~~~~~d~viea~~e--------------~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~----~-~~~r~~ 65 (290)
.+++++||+||=++.= +..+=+++-.++.+.+ |++++..-| -|.+-++..+ . .|.|++
T Consensus 61 ~~~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~s--NP~d~~~~~~~~~sg~~~~kvi 137 (300)
T cd00300 61 YADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVS--NPVDILTYVAQKLSGLPKNRVI 137 (300)
T ss_pred HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcc--ChHHHHHHHHHHHhCcCHHHEE
Confidence 3589999999988752 4455677888899988 666544333 2444444333 2 246666
Q ss_pred eeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 66 g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
|+ .|..+....-..+++.+|..|-.+
T Consensus 138 G~------------------gt~lDs~r~~~~la~~l~v~~~~v 163 (300)
T cd00300 138 GS------------------GTLLDSARFRSLLAEKLDVDPQSV 163 (300)
T ss_pred ec------------------CCcHHHHHHHHHHHHHhCCCcccE
Confidence 65 367777888888888898755444
No 444
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=63.54 E-value=42 Score=31.03 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=23.4
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCH
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLS 147 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~ 147 (290)
+|.+|..++..++..|. ++.++|.+.
T Consensus 32 ~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 32 AGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 68999999999999998 899999874
No 445
>PRK07478 short chain dehydrogenase; Provisional
Probab=63.38 E-value=16 Score=31.57 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=30.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
.+.+|.+++..++..|++|.+.+++++.++...+.++
T Consensus 15 s~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 51 (254)
T PRK07478 15 SSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIR 51 (254)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 4678999999999999999999999988776655443
No 446
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=63.21 E-value=7.1 Score=35.89 Aligned_cols=86 Identities=8% Similarity=-0.055 Sum_probs=54.3
Q ss_pred cHHhhcccCcEEEEccc--------------CChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhccc-----CCC-C
Q psy17416 3 VLRECLEDAIFIQESVP--------------EILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHS-----THR-S 62 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~--------------e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~-----~~~-~ 62 (290)
+..++++|||+||=+.- -|.++=+++-.++.+.+++++++..-| -|+.-++..+ ..| +
T Consensus 72 ~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v~~k~s~g~p~~ 149 (323)
T TIGR01759 72 DPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNALIASKNAPDIPPK 149 (323)
T ss_pred ChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHHHHHHHHcCCCCHH
Confidence 45678999999984431 123455677888999998788776554 4666544333 222 3
Q ss_pred ceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 63 QFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 63 r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
|++ .. |.-++.+.-..+++.+|-.|-.+
T Consensus 150 rVi-----------------G~--t~LDs~R~r~~la~~l~v~~~~V 177 (323)
T TIGR01759 150 NFS-----------------AM--TRLDHNRAKYQLAAKAGVPVSDV 177 (323)
T ss_pred HEE-----------------Ee--eHHHHHHHHHHHHHHhCcChHHe
Confidence 333 32 66667777777788888654433
No 447
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=63.07 E-value=13 Score=34.02 Aligned_cols=72 Identities=7% Similarity=0.003 Sum_probs=51.0
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecC--CCCChHHHhcccC-CCCceeeeccCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST--SSFLPSVLSEHST-HRSQFIVAHPVNPP 73 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snt--s~~~~~~l~~~~~-~~~r~~g~hf~~P~ 73 (290)
++|++.+++||+|+-++|-+-+.+.-+-++.=+.++++++|.--. .-+.-..|..++. .+-+-.++=-|.|.
T Consensus 182 ~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~E 256 (312)
T PRK15469 182 EELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSRE 256 (312)
T ss_pred ccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCC
Confidence 478999999999999999999999988887778889998665333 2333446766664 33344455544433
No 448
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=63.00 E-value=23 Score=30.50 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=30.4
Q ss_pred ccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 121 IHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 121 i~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
..+.+|..++..+++.|++|.+.+++++.++...+.+
T Consensus 19 as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 55 (256)
T PRK06124 19 SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAAL 55 (256)
T ss_pred CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 3578899999999999999999999988776555443
No 449
>PRK07890 short chain dehydrogenase; Provisional
Probab=62.81 E-value=16 Score=31.40 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=29.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.+.+|+.++..++..|+.|.+.+++++.++...+.+
T Consensus 14 ~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 49 (258)
T PRK07890 14 GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEI 49 (258)
T ss_pred CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 467899999999999999999999988766555443
No 450
>PRK08862 short chain dehydrogenase; Provisional
Probab=62.79 E-value=16 Score=31.32 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=30.5
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
+-+|.+++..++..|++|.+.+++++.+++..+.++
T Consensus 15 ~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~ 50 (227)
T PRK08862 15 SVLGRTISCHFARLGATLILCDQDQSALKDTYEQCS 50 (227)
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence 467999999999999999999999988877766543
No 451
>PRK05867 short chain dehydrogenase; Provisional
Probab=62.67 E-value=16 Score=31.44 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=29.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.+.+|.+++..+++.|++|.+.+++++.+++..+.+
T Consensus 18 s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l 53 (253)
T PRK05867 18 STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEI 53 (253)
T ss_pred CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 467899999999999999999999988776655443
No 452
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=62.54 E-value=5.7 Score=32.36 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=54.4
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHH-HHHhhcCCCcEEeecCCCCChH---HHhcccCC-CCceeeeccCCCCC--
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYR-AIDIFMSSNTILSSSTSSFLPS---VLSEHSTH-RSQFIVAHPVNPPY-- 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~-~~~~~~~~~~i~~snts~~~~~---~l~~~~~~-~~r~~g~hf~~P~~-- 74 (290)
++++|++++||+|+=+++.+-+++.=++. .+-..+.++.++. ++|+.++. ++++.+.. --+++-.-..-.++
T Consensus 49 ~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iii-d~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a 127 (163)
T PF03446_consen 49 DSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRPGKIII-DMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGA 127 (163)
T ss_dssp SSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEE-E-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHH
T ss_pred hhhhhHhhcccceEeecccchhhhhhhhhhHHhhccccceEEE-ecCCcchhhhhhhhhhhhhccceeeeeeeecccccc
Confidence 57889999999999999999888765554 0445555665554 33343443 55554421 12222221111111
Q ss_pred -CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 75 -FIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 75 -~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
.-.+.=++. -+++.++.+..+++.+++...
T Consensus 128 ~~g~l~~~~g---G~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 128 EEGTLTIMVG---GDEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp HHTTEEEEEE---S-HHHHHHHHHHHHHHEEEEE
T ss_pred cccceEEEcc---CCHHHHHHHHHHHHHHhCCce
Confidence 012222222 357788888888888887444
No 453
>PRK07814 short chain dehydrogenase; Provisional
Probab=62.42 E-value=17 Score=31.70 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=29.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.|.+|.+++..++..|++|.+.+++++.++...+.+
T Consensus 19 sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l 54 (263)
T PRK07814 19 GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQI 54 (263)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 467899999999999999999999988766554433
No 454
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=62.31 E-value=66 Score=27.67 Aligned_cols=55 Identities=18% Similarity=0.116 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCc-eeEEecCCH
Q psy17416 87 TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGY-KVSLYDVLS 147 (290)
Q Consensus 87 t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~-~V~l~d~~~ 147 (290)
|.--++..+.+.+++++..+ +. . -++-.-+|..|+.+|..+.+.|. .|.+.|.+.
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l----~g-~-~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSL----EG-L-TVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred chhHHHHHHHHHHHHcCCCc----CC-C-EEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 44456667777788877321 11 1 12223379999999999999987 455677776
No 455
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=61.94 E-value=27 Score=31.37 Aligned_cols=98 Identities=16% Similarity=0.090 Sum_probs=59.4
Q ss_pred EEecccchhHHHHHHHHHHcCceeEEe--cCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc------CCc
Q psy17416 117 ALNRIHGLIGQAWAMIFASAGYKVSLY--DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG------TPV 188 (290)
Q Consensus 117 ~~nri~G~~g~~ia~~~~~~G~~V~l~--d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~------~~~ 188 (290)
++|-..|.||+.++......|+++... |..... +...+ . .|. .+.. ..+
T Consensus 4 ~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~-~~~~~----~------~g~------------~v~v~~~~~~~~~ 60 (275)
T TIGR02130 4 MVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEA-ENEAE----V------AGK------------EILLHGPSEREAR 60 (275)
T ss_pred EEeCCCChHHHHHHHHHhcCCCEEEeeEccccccc-cchhh----h------ccc------------ceeeecccccccc
Confidence 466678999999998877777776642 222111 00000 0 000 1222 567
Q ss_pred hHhhccc-Cc-EEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhcc
Q psy17416 189 LRECLED-AI-FIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242 (290)
Q Consensus 189 l~~~l~~-aD-lVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~ 242 (290)
+++.+.. +| ++|+=.. -..++..+...+..+..++..|+++..+++...
T Consensus 61 l~~~~~~~~d~VvIDFT~-----P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l 111 (275)
T TIGR02130 61 IGEVFAKYPELICIDYTH-----PSAVNDNAAFYGKHGIPFVMGTTGGDREALAKL 111 (275)
T ss_pred HHHHHhhcCCEEEEECCC-----hHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHH
Confidence 7777766 88 7776332 234455566677778888889999998877543
No 456
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.90 E-value=16 Score=31.17 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=29.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 156 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~ 156 (290)
.|.+|.+++..+++.|++|++.+++++..+.....
T Consensus 14 sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~ 48 (251)
T PRK07231 14 SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAE 48 (251)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 47889999999999999999999999876655443
No 457
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=61.87 E-value=17 Score=31.27 Aligned_cols=36 Identities=25% Similarity=0.221 Sum_probs=30.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.+.+|.+++..+++.|++|.+.+++++.+++..+.+
T Consensus 18 s~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l 53 (254)
T PRK08085 18 AQGIGFLLATGLAEYGAEIIINDITAERAELAVAKL 53 (254)
T ss_pred CChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHH
Confidence 478899999999999999999999988776655544
No 458
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=61.41 E-value=4.9 Score=32.11 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=37.8
Q ss_pred cHHhhcccCcEEEEcccC--------------ChHHHHHHHHHHHhhcCCCcEEe--ecCCCCChHHHhcccC-CCCcee
Q psy17416 3 VLRECLEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHST-HRSQFI 65 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e--------------~~~~K~~~~~~~~~~~~~~~i~~--snts~~~~~~l~~~~~-~~~r~~ 65 (290)
+..++++|||+|+=+.-. |.++=+++-+++.+.+ |++++. ||-..+-..-+....+ .|+|++
T Consensus 62 ~~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd~~t~~~~~~s~~~~~kvi 140 (141)
T PF00056_consen 62 GDYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVDVMTYVAQKYSGFPPNKVI 140 (141)
T ss_dssp SSGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHHHHHHHHHHHHTSSGGGEE
T ss_pred ccccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHHHHHHHHHHhhCcCcccCc
Confidence 456789999999977633 3345567778888998 665443 4433321112222222 467777
Q ss_pred e
Q psy17416 66 V 66 (290)
Q Consensus 66 g 66 (290)
|
T Consensus 141 G 141 (141)
T PF00056_consen 141 G 141 (141)
T ss_dssp E
T ss_pred C
Confidence 6
No 459
>KOG1201|consensus
Probab=61.35 E-value=11 Score=34.00 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
+-+|+.+|..+++.|..+.+||.+.+...+..+.+++
T Consensus 48 ~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~ 84 (300)
T KOG1201|consen 48 SGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRK 84 (300)
T ss_pred chHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHh
Confidence 4689999999999999999999999888777776664
No 460
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=61.33 E-value=21 Score=31.27 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=25.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQI 150 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l 150 (290)
.|.+|..++..+.+.|++|+..++++...
T Consensus 7 tG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 35 (292)
T TIGR01777 7 TGFIGRALTQRLTKDGHEVTILTRSPPAG 35 (292)
T ss_pred cchhhHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 47889999999999999999999988654
No 461
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=61.28 E-value=17 Score=31.26 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=31.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
.|.+|..++..+++.|++|.+.+++++..++..+.++
T Consensus 16 sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 52 (262)
T PRK13394 16 ASGIGKEIALELARAGAAVAIADLNQDGANAVADEIN 52 (262)
T ss_pred CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Confidence 4788999999999999999999999987776666543
No 462
>PRK06172 short chain dehydrogenase; Provisional
Probab=60.87 E-value=19 Score=30.98 Aligned_cols=36 Identities=33% Similarity=0.276 Sum_probs=30.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.|.+|..++..+++.|++|.+.+++++.+++..+.+
T Consensus 16 s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (253)
T PRK06172 16 AAGIGRATALAFAREGAKVVVADRDAAGGEETVALI 51 (253)
T ss_pred CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 478899999999999999999999998776655543
No 463
>PRK08703 short chain dehydrogenase; Provisional
Probab=60.78 E-value=18 Score=30.81 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=28.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.|.+|..++..+++.|++|.+.+++++.++...+
T Consensus 15 sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (239)
T PRK08703 15 SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYD 48 (239)
T ss_pred CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHH
Confidence 5788999999999999999999999987655444
No 464
>PRK07062 short chain dehydrogenase; Provisional
Probab=60.74 E-value=18 Score=31.39 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=30.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.+.+|.+++..+++.|+.|.+.+++++.+++..+.+
T Consensus 17 s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 52 (265)
T PRK07062 17 SSGIGLATVELLLEAGASVAICGRDEERLASAEARL 52 (265)
T ss_pred CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 467899999999999999999999998877665544
No 465
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=60.71 E-value=18 Score=31.02 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=29.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.|.+|..++..+++.|++|.+.+++++.+++..+.+
T Consensus 21 ~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l 56 (247)
T PRK08945 21 GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEI 56 (247)
T ss_pred CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Confidence 578899999999999999999999988776554433
No 466
>PRK05876 short chain dehydrogenase; Provisional
Probab=60.40 E-value=19 Score=31.85 Aligned_cols=36 Identities=33% Similarity=0.298 Sum_probs=29.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.+.+|.+++..+++.|++|.+.+++++.+++..+.+
T Consensus 15 s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l 50 (275)
T PRK05876 15 ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHL 50 (275)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 467899999999999999999999988776655433
No 467
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=60.36 E-value=17 Score=30.79 Aligned_cols=88 Identities=17% Similarity=0.198 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcc
Q psy17416 124 LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV 203 (290)
Q Consensus 124 ~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieav 203 (290)
--|+. +..+++.|++|+.+|.++..++++.+..++. + ++.......+. ..++. ..-|+|+..+
T Consensus 40 G~GRN-alyLA~~G~~VtAvD~s~~al~~l~~~a~~~-------~-----l~i~~~~~Dl~-~~~~~---~~yD~I~st~ 102 (192)
T PF03848_consen 40 GEGRN-ALYLASQGFDVTAVDISPVALEKLQRLAEEE-------G-----LDIRTRVADLN-DFDFP---EEYDFIVSTV 102 (192)
T ss_dssp TTSHH-HHHHHHTT-EEEEEESSHHHHHHHHHHHHHT-------T------TEEEEE-BGC-CBS-T---TTEEEEEEES
T ss_pred CCcHH-HHHHHHCCCeEEEEECCHHHHHHHHHHHhhc-------C-----ceeEEEEecch-hcccc---CCcCEEEEEE
Confidence 34554 5678889999999999999998765533221 1 11000001111 11221 2457776432
Q ss_pred ---ccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 204 ---PEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 204 ---pe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.=+.+....+++.+.+.+++|.++.
T Consensus 103 v~~fL~~~~~~~i~~~m~~~~~pGG~~l 130 (192)
T PF03848_consen 103 VFMFLQRELRPQIIENMKAATKPGGYNL 130 (192)
T ss_dssp SGGGS-GGGHHHHHHHHHHTEEEEEEEE
T ss_pred EeccCCHHHHHHHHHHHHhhcCCcEEEE
Confidence 2223345678888988888887654
No 468
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=60.14 E-value=53 Score=27.51 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=47.9
Q ss_pred HHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-CCchHh--hcccCcEEEEcccc-
Q psy17416 130 AMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-TPVLRE--CLEDAIFIQESVPE- 205 (290)
Q Consensus 130 a~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~l~~--~l~~aDlVieavpe- 205 (290)
+..++..|++|+.+|.+++.++.+.+.... .+. . ++++ ..|+.+ .-..-|+|+....-
T Consensus 45 a~~La~~g~~V~gvD~S~~~i~~a~~~~~~-------~~~-~----------~v~~~~~d~~~~~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 45 SLYLAANGFDVTAWDKNPMSIANLERIKAA-------ENL-D----------NLHTAVVDLNNLTFDGEYDFILSTVVLM 106 (197)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-------cCC-C----------cceEEecChhhCCcCCCcCEEEEecchh
Confidence 455667799999999999998887764432 111 0 0110 011111 01246888765331
Q ss_pred --chHHHHHHHHHHhhhCCCCcE
Q psy17416 206 --ILQIKHQVYRAIDIFMSSNTI 226 (290)
Q Consensus 206 --~~~~k~~~~~~l~~~~~~~~i 226 (290)
+.+....+++++.+.++++..
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~ 129 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGY 129 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcE
Confidence 223457888999999999886
No 469
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=59.71 E-value=17 Score=31.97 Aligned_cols=36 Identities=36% Similarity=0.338 Sum_probs=31.4
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
.-+|.++|..|+..|++|.+.+|..+.++.....+.
T Consensus 16 SGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~ 51 (246)
T COG4221 16 SGIGEATARALAEAGAKVVLAARREERLEALADEIG 51 (246)
T ss_pred chHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhc
Confidence 357899999999999999999999999988776555
No 470
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=59.56 E-value=41 Score=29.65 Aligned_cols=34 Identities=29% Similarity=0.254 Sum_probs=26.8
Q ss_pred cchhHHHHHHHHHHcCce-eEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYK-VSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~-V~l~d~~~e~l~~a~~ 155 (290)
.|.+|..+++.+...|.. |...+.+++.++.+.+
T Consensus 129 ~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 129 AGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 578888888887778986 8888999887766554
No 471
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=59.28 E-value=42 Score=29.20 Aligned_cols=76 Identities=13% Similarity=0.091 Sum_probs=46.1
Q ss_pred cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-CCchHh-hcccCcEEEEccc---cchHHH
Q psy17416 136 AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-TPVLRE-CLEDAIFIQESVP---EILQIK 210 (290)
Q Consensus 136 ~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~l~~-~l~~aDlVieavp---e~~~~k 210 (290)
.+.+|+.+|.+++-++.+.+++... +.. .++++ ..+..+ ...+.|+|+-+.. -+.+.+
T Consensus 81 ~~~~v~gvD~S~~ml~~A~~~~~~~-------~~~----------~~v~~~~~d~~~~~~~~~D~vv~~~~l~~l~~~~~ 143 (247)
T PRK15451 81 DNCKIIAIDNSPAMIERCRRHIDAY-------KAP----------TPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSER 143 (247)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-------CCC----------CCeEEEeCChhhCCCCCCCEEehhhHHHhCCHHHH
Confidence 4689999999999999888765431 110 01111 112211 1245677764321 012347
Q ss_pred HHHHHHHhhhCCCCcEEE
Q psy17416 211 HQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 211 ~~~~~~l~~~~~~~~ii~ 228 (290)
..+++++.+.+++|..++
T Consensus 144 ~~~l~~i~~~LkpGG~l~ 161 (247)
T PRK15451 144 QALLDKIYQGLNPGGALV 161 (247)
T ss_pred HHHHHHHHHhcCCCCEEE
Confidence 889999999999987665
No 472
>KOG1200|consensus
Probab=59.27 E-value=80 Score=27.16 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 124 LIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 124 ~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
-+|++++..+++.|++|.+.|++....+....
T Consensus 25 GIGrAia~~la~~Garv~v~dl~~~~A~ata~ 56 (256)
T KOG1200|consen 25 GIGRAIAQLLAKKGARVAVADLDSAAAEATAG 56 (256)
T ss_pred hHHHHHHHHHHhcCcEEEEeecchhhHHHHHh
Confidence 57999999999999999999998875554433
No 473
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=59.10 E-value=16 Score=33.52 Aligned_cols=91 Identities=11% Similarity=0.011 Sum_probs=56.7
Q ss_pred CcHHhhcccCcEEEEcccC--------------ChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeee
Q psy17416 2 PVLRECLEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 67 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e--------------~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~ 67 (290)
++..++++|||+|+=+.-= |.++=+++..+|.+.+.|++++..-| -|+.-++..+..- -
T Consensus 68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~k~---s-- 140 (323)
T cd00704 68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALIALKN---A-- 140 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHHHHHH---c--
Confidence 3556799999999954321 34455677778888877788666653 4777666544211 0
Q ss_pred ccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 68 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 68 hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
-+.|+. -|+ |. |.-++.+.-..++++++-.|-
T Consensus 141 -g~~p~~-----~vi-g~-t~LDs~R~r~~la~~l~v~~~ 172 (323)
T cd00704 141 -PNLPPK-----NFT-AL-TRLDHNRAKAQVARKLGVRVS 172 (323)
T ss_pred -CCCCHH-----HEE-Ee-eHHHHHHHHHHHHHHhCcCHH
Confidence 011222 245 33 777787887888888885443
No 474
>PRK06194 hypothetical protein; Provisional
Probab=58.94 E-value=20 Score=31.52 Aligned_cols=35 Identities=31% Similarity=0.349 Sum_probs=29.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 156 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~ 156 (290)
.|.+|..++..+++.|++|++.|++.+.+++..+.
T Consensus 15 sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 49 (287)
T PRK06194 15 ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAE 49 (287)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH
Confidence 46789999999999999999999998776655443
No 475
>PRK05866 short chain dehydrogenase; Provisional
Probab=58.76 E-value=21 Score=31.90 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=30.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.|.+|.+++..++..|++|.+.+++++.+++..+.+
T Consensus 49 sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l 84 (293)
T PRK05866 49 SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRI 84 (293)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 478899999999999999999999998776655443
No 476
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=58.58 E-value=29 Score=31.19 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=26.8
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~ 155 (290)
+|-.+++++..++..|. ++.+++|+++..+...+
T Consensus 135 aGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 135 AGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 56777888888888886 79999999987665444
No 477
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=58.53 E-value=81 Score=26.92 Aligned_cols=107 Identities=13% Similarity=0.074 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHcCce-eEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCC-c-hHhhcccCcEEE
Q psy17416 124 LIGQAWAMIFASAGYK-VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP-V-LRECLEDAIFIQ 200 (290)
Q Consensus 124 ~~g~~ia~~~~~~G~~-V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~-~-l~~~l~~aDlVi 200 (290)
-+|+...+..+..|.. +..+...++..+.|....+.........|...... .. ....+.+ + ....+++||+|+
T Consensus 52 G~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v---~l-~~gdfl~~~~~~~~~s~AdvVf 127 (205)
T PF08123_consen 52 GVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV---EL-IHGDFLDPDFVKDIWSDADVVF 127 (205)
T ss_dssp TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE---EE-ECS-TTTHHHHHHHGHC-SEEE
T ss_pred CCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc---ee-eccCccccHhHhhhhcCCCEEE
Confidence 3456555555556765 88888888877766654443332222222221110 00 1111221 1 233468999998
Q ss_pred Eccc-cchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH
Q psy17416 201 ESVP-EILQIKHQVYRAIDIFMSSNTILSSSTSSFLP 236 (290)
Q Consensus 201 eavp-e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 236 (290)
-.-. =+.+++..+ .++...+++++.|+|. +.+..
T Consensus 128 ~Nn~~F~~~l~~~L-~~~~~~lk~G~~IIs~-~~~~~ 162 (205)
T PF08123_consen 128 VNNTCFDPDLNLAL-AELLLELKPGARIIST-KPFCP 162 (205)
T ss_dssp E--TTT-HHHHHHH-HHHHTTS-TT-EEEES-S-SS-
T ss_pred EeccccCHHHHHHH-HHHHhcCCCCCEEEEC-CCcCC
Confidence 6321 123345666 4445568999998874 44443
No 478
>PRK08643 acetoin reductase; Validated
Probab=58.50 E-value=21 Score=30.70 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=29.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.+.+|..++..+++.|++|.+.+++++..++....+
T Consensus 11 s~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 46 (256)
T PRK08643 11 GQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKL 46 (256)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 467899999999999999999999988776655543
No 479
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=58.48 E-value=17 Score=34.03 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=26.6
Q ss_pred cchhHHH-HHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQA-WAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~-ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+|.+|++ +..++.+.|+.|+++|++++.++...+
T Consensus 8 aGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~ 42 (381)
T PRK02318 8 AGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNK 42 (381)
T ss_pred CchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhc
Confidence 6889984 577888889999999998876555444
No 480
>PRK07326 short chain dehydrogenase; Provisional
Probab=58.30 E-value=29 Score=29.37 Aligned_cols=35 Identities=29% Similarity=0.317 Sum_probs=29.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 156 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~ 156 (290)
.|.+|..++..++..|++|.+.+++++...+..+.
T Consensus 15 tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~ 49 (237)
T PRK07326 15 SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAE 49 (237)
T ss_pred CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHH
Confidence 57889999999999999999999998776655443
No 481
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=58.16 E-value=22 Score=31.18 Aligned_cols=36 Identities=36% Similarity=0.428 Sum_probs=29.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.+.+|..++..+++.|++|.+.+++++..+...+.+
T Consensus 19 s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 54 (278)
T PRK08277 19 GGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEI 54 (278)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 467899999999999999999999987766554433
No 482
>PRK06139 short chain dehydrogenase; Provisional
Probab=58.12 E-value=21 Score=32.65 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=31.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
.+-+|++++..+++.|++|.+.+++++.+++..+.++
T Consensus 16 s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~ 52 (330)
T PRK06139 16 SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECR 52 (330)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 4678999999999999999999999988876655443
No 483
>PRK08265 short chain dehydrogenase; Provisional
Probab=58.12 E-value=18 Score=31.41 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=28.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.+.+|++++..+++.|++|.+.+++++.+++..+
T Consensus 15 s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 15 ATLIGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4678999999999999999999999877665443
No 484
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=57.83 E-value=1.2e+02 Score=25.73 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=21.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCC
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVL 146 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~ 146 (290)
.|.+|...+..+...|.+|++++.+
T Consensus 18 gG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 18 GGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 5788888888899999999999765
No 485
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=57.75 E-value=23 Score=30.39 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=30.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.|.+|..++..+...|++|.+.+++++..++..+.+
T Consensus 13 sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 48 (258)
T PRK12429 13 ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEAL 48 (258)
T ss_pred CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 578899999999999999999999998776655443
No 486
>PRK06101 short chain dehydrogenase; Provisional
Probab=57.65 E-value=18 Score=30.92 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=27.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENA 153 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a 153 (290)
.|.+|.+++..++..|++|.+.+++++.++..
T Consensus 10 s~giG~~la~~L~~~G~~V~~~~r~~~~~~~~ 41 (240)
T PRK06101 10 TSGIGKQLALDYAKQGWQVIACGRNQSVLDEL 41 (240)
T ss_pred CcHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 47889999999999999999999998765543
No 487
>KOG2666|consensus
Probab=57.58 E-value=61 Score=29.90 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=51.8
Q ss_pred CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---hhhhhcccccCCchHhhcccCcEEEEccccchH-----
Q psy17416 137 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLS---PEEQFGLISGTPVLRECLEDAIFIQESVPEILQ----- 208 (290)
Q Consensus 137 G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~---~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~----- 208 (290)
...|+++|.+...+..=.. + +.....+.+. ....-.++-+++|++.+++++|+|+.+|.....
T Consensus 26 ~i~vtvvd~s~~ri~~wns------d---~lpiyepgldevv~~crgknlffstdiekai~eadlvfisvntptkt~g~g 96 (481)
T KOG2666|consen 26 DIEVTVVDISVPRINAWNS------D---KLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADLVFISVNTPTKTYGLG 96 (481)
T ss_pred ceEEEEEecCchHhhcccC------C---CCcccCCCHHHHHHHhcCCceeeecchHHHhhhcceEEEEecCCcccccCC
Confidence 4689999999887643111 0 0000000000 011224677889999999999999998865431
Q ss_pred --------HHHHHHHHHhhhCCCCcEEEeCCCCcCH
Q psy17416 209 --------IKHQVYRAIDIFMSSNTILSSSTSSFLP 236 (290)
Q Consensus 209 --------~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 236 (290)
--...-+.+.+....+.|++ --|+.++
T Consensus 97 kg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv 131 (481)
T KOG2666|consen 97 KGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPV 131 (481)
T ss_pred CCcccchhHHHHHHHHHHHhccCCeEEE-eeccccc
Confidence 11233345777777777775 4444444
No 488
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.46 E-value=27 Score=33.03 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=25.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQI 150 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l 150 (290)
.|.+|.++|..+.+.|+.|.++|.++..+
T Consensus 11 lG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 11 LGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred ECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 68899999999999999999999887654
No 489
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=57.44 E-value=81 Score=28.79 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCC
Q psy17416 90 RVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGC 169 (290)
Q Consensus 90 ~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~ 169 (290)
+++..+.-+.+..|... +.+-.-+|++. .+...++++..+...|.+|.+.....- .+...+.... .+.+.
T Consensus 134 QaL~Dl~Ti~e~~g~~~--l~g~~va~vGd--~~rv~~Sl~~~~~~~G~~v~~~~P~~~-~~~~~~~~~~---~~~~~-- 203 (311)
T PRK14804 134 QSLADIMTIALDSPEIP--LNQKQLTYIGV--HNNVVNSLIGITAALGIHLTLVTPIAA-KENIHAQTVE---RAKKK-- 203 (311)
T ss_pred HHHHHHHHHHHHhCCCC--CCCCEEEEECC--CCcHHHHHHHHHHHcCCEEEEECCCCc-cHHHHHHHHH---HHHhc--
Confidence 55666666666666200 11222234442 234467777778888999998876441 0111111111 11011
Q ss_pred CCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 170 LKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 170 ~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+.+.+++|++++++++|+|.-
T Consensus 204 -----------g~i~~~~d~~~av~~aDvvy~ 224 (311)
T PRK14804 204 -----------GTLSWEMNLHKAVSHADYVYT 224 (311)
T ss_pred -----------CCeEEEeCHHHHhCCCCEEEe
Confidence 234567899999999999986
No 490
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=56.89 E-value=12 Score=33.88 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=50.9
Q ss_pred hhcccCcEEEEcccC--------------ChHHHHHHHHHHHhhcCCCcEE--eecCCCCChHHHhcccCC-CCceeeec
Q psy17416 6 ECLEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHSTH-RSQFIVAH 68 (290)
Q Consensus 6 ~~~~~~d~viea~~e--------------~~~~K~~~~~~~~~~~~~~~i~--~snts~~~~~~l~~~~~~-~~r~~g~h 68 (290)
+++++||+||-+..- |.++=+++-.++.+.++ ++++ .||-..+-..-+...... |+|++|+
T Consensus 64 ~~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvsNP~d~~~~~~~~~~g~p~~~v~g~- 141 (306)
T cd05291 64 SDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVASNPVDVITYVVQKLSGLPKNRVIGT- 141 (306)
T ss_pred HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEecChHHHHHHHHHHHhCcCHHHEeec-
Confidence 468999999998875 44555778888889876 6543 344333222222222232 3555554
Q ss_pred cCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 69 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 69 f~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
.|.-+.......+++.+|-.|-
T Consensus 142 -----------------gt~LDs~R~~~~la~~l~v~~~ 163 (306)
T cd05291 142 -----------------GTSLDTARLRRALAEKLNVDPR 163 (306)
T ss_pred -----------------cchHHHHHHHHHHHHHHCCCcc
Confidence 3566666777777888886443
No 491
>PRK07454 short chain dehydrogenase; Provisional
Probab=56.88 E-value=24 Score=30.00 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=29.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 156 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~ 156 (290)
.|.+|..++..+++.|++|.+.+++++..+...+.
T Consensus 15 sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 49 (241)
T PRK07454 15 SSGIGKATALAFAKAGWDLALVARSQDALEALAAE 49 (241)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 47889999999999999999999998776554443
No 492
>PRK07035 short chain dehydrogenase; Provisional
Probab=56.86 E-value=25 Score=30.21 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=29.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.+.+|.+++..+++.|++|.+.+++++.++...+.+
T Consensus 17 s~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~ 52 (252)
T PRK07035 17 SRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAI 52 (252)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 477899999999999999999999988776555443
No 493
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=56.76 E-value=36 Score=26.96 Aligned_cols=74 Identities=23% Similarity=0.156 Sum_probs=48.1
Q ss_pred CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-CCchHhh---c-ccCcEEEEccc-cchHHH
Q psy17416 137 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-TPVLREC---L-EDAIFIQESVP-EILQIK 210 (290)
Q Consensus 137 G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~l~~~---l-~~aDlVieavp-e~~~~k 210 (290)
+.+++.+|.+++.++.+.+..++. +.. ++++ ..|+.+. + ...|+|+...+ ....-.
T Consensus 28 ~~~i~gvD~s~~~i~~a~~~~~~~-------~~~-----------ni~~~~~d~~~l~~~~~~~~D~I~~~~~l~~~~~~ 89 (152)
T PF13847_consen 28 GAKIIGVDISEEMIEYAKKRAKEL-------GLD-----------NIEFIQGDIEDLPQELEEKFDIIISNGVLHHFPDP 89 (152)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHT-------TST-----------TEEEEESBTTCGCGCSSTTEEEEEEESTGGGTSHH
T ss_pred CCEEEEEECcHHHHHHhhcccccc-------ccc-----------ccceEEeehhccccccCCCeeEEEEcCchhhccCH
Confidence 678999999999999988855532 111 1111 1222221 1 47899987633 334445
Q ss_pred HHHHHHHhhhCCCCcEEE
Q psy17416 211 HQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 211 ~~~~~~l~~~~~~~~ii~ 228 (290)
..+++++.+.++++.++.
T Consensus 90 ~~~l~~~~~~lk~~G~~i 107 (152)
T PF13847_consen 90 EKVLKNIIRLLKPGGILI 107 (152)
T ss_dssp HHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEE
Confidence 688999999999887666
No 494
>PRK06720 hypothetical protein; Provisional
Probab=56.75 E-value=26 Score=28.79 Aligned_cols=34 Identities=26% Similarity=0.236 Sum_probs=27.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.+.+|.+++..+...|++|.++|++.+.++...+
T Consensus 25 ~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~ 58 (169)
T PRK06720 25 GIGIGRNTALLLAKQGAKVIVTDIDQESGQATVE 58 (169)
T ss_pred CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999876654433
No 495
>PRK07831 short chain dehydrogenase; Provisional
Probab=56.62 E-value=23 Score=30.70 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 124 LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 124 ~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
-+|.+++..++..|+.|.+.+++++.+++..+.+++
T Consensus 29 gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~ 64 (262)
T PRK07831 29 GIGSATARRALEEGARVVISDIHERRLGETADELAA 64 (262)
T ss_pred cHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Confidence 489999999999999999999999887776665543
No 496
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=56.53 E-value=21 Score=30.76 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=29.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.|.+|..++..+++.|++|.+.+++.+.+++..+
T Consensus 15 s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (257)
T PRK07067 15 ASGIGEAVAERYLAEGARVVIADIKPARARLAAL 48 (257)
T ss_pred CchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 4778999999999999999999999987765444
No 497
>PRK09072 short chain dehydrogenase; Provisional
Probab=56.30 E-value=22 Score=30.81 Aligned_cols=34 Identities=35% Similarity=0.390 Sum_probs=29.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.|.+|.+++..+++.|++|.+.+++++.++...+
T Consensus 14 s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (263)
T PRK09072 14 SGGIGQALAEALAAAGARLLLVGRNAEKLEALAA 47 (263)
T ss_pred CchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4788999999999999999999999887765544
No 498
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=56.25 E-value=15 Score=33.61 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=51.8
Q ss_pred cHHhhcccCcEEEEccc--------------CChHHHHHHHHHHHhhcCCCcEE--eecCCCC---ChHHHh-cccCC-C
Q psy17416 3 VLRECLEDAIFIQESVP--------------EILQIKHQVYRAIDIFMSSNTIL--SSSTSSF---LPSVLS-EHSTH-R 61 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~--------------e~~~~K~~~~~~~~~~~~~~~i~--~snts~~---~~~~l~-~~~~~-~ 61 (290)
|+.++++|||+|+=+.- .|.++=+++-.+|.+.+ |++++ .||--.. -++..+ ..... |
T Consensus 60 ~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~ 138 (312)
T TIGR01772 60 GLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVNSTVPIAAEVLKKKGVYDP 138 (312)
T ss_pred chHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchhhHHHHHHHHHHHhcCCCh
Confidence 46789999999985543 24445566667777885 66643 4554432 123333 22333 4
Q ss_pred CceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeE
Q psy17416 62 SQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFA 117 (290)
Q Consensus 62 ~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~ 117 (290)
+|++|+- + -++...-..+++.+|..| ++..+|+
T Consensus 139 ~rViG~g------------------~-LDsaR~r~~la~~l~v~~----~~v~~~V 171 (312)
T TIGR01772 139 NKLFGVT------------------T-LDIVRANTFVAELKGKDP----MEVNVPV 171 (312)
T ss_pred HHEEeee------------------c-chHHHHHHHHHHHhCCCH----HHeEEEE
Confidence 6777763 1 234445556667777633 3456666
No 499
>PRK07832 short chain dehydrogenase; Provisional
Probab=55.96 E-value=25 Score=30.75 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=29.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.+.+|..++..+++.|+.|.+++++++.+++..+.+
T Consensus 9 s~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~ 44 (272)
T PRK07832 9 ASGIGRATALRLAAQGAELFLTDRDADGLAQTVADA 44 (272)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 467899999999999999999999988776655443
No 500
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=55.90 E-value=1.3e+02 Score=26.90 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhcCCCcEEe-ecCCCCChHH----HhcccCCCCceeeeccCCCCCCC----CeeeEeeCCCC------C
Q psy17416 24 IKHQVYRAIDIFMSSNTILS-SSTSSFLPSV----LSEHSTHRSQFIVAHPVNPPYFI----PLVEIVPAAWT------S 88 (290)
Q Consensus 24 ~K~~~~~~~~~~~~~~~i~~-snts~~~~~~----l~~~~~~~~r~~g~hf~~P~~~~----~lvEiv~~~~t------~ 88 (290)
.--++-+.|-..++.++++| |+|+ |.-. |-..++.+.+=+|+.-++|+-.- .---++.|..| +
T Consensus 95 ~T~~Iarei~~hvpEgAVicnTCT~--sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elAT 172 (340)
T COG4007 95 ATFGIAREILEHVPEGAVICNTCTV--SPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELAT 172 (340)
T ss_pred hhHHHHHHHHhhCcCCcEecccccC--chhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeecc
Confidence 34567788888999999998 3443 3332 33455677788888888887421 22234444444 5
Q ss_pred HHHHHHHHHHHHHhCCccEEEeccc
Q psy17416 89 ERVITRTREIMTEIGMKPVTLTTEI 113 (290)
Q Consensus 89 ~~~~~~~~~~~~~lgk~~v~v~~d~ 113 (290)
++-+..+.++++..||.+.++..|.
T Consensus 173 eEQi~r~velaes~Gk~~yv~padv 197 (340)
T COG4007 173 EEQIERCVELAESTGKEVYVLPADV 197 (340)
T ss_pred HHHHHHHHHHHHhcCCceEecCHHH
Confidence 7888999999999999999886553
Done!