RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17416
(290 letters)
>gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated.
Length = 308
Score = 167 bits (426), Expect = 2e-50
Identities = 64/168 (38%), Positives = 94/168 (55%), Gaps = 1/168 (0%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG+AWA++FA AG++V L+D A I L+D L G +P+
Sbjct: 11 GLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGE-APDAVLAR 69
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
I T L + + DA ++QES PE L++K ++ +D + IL+SSTS+ L S +EH
Sbjct: 70 IRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEH 129
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
R + +VAHP+NPPY IP+VE+VPA WT+ + R + G
Sbjct: 130 LAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQS 177
Score = 154 bits (390), Expect = 5e-45
Identities = 55/133 (41%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
Query: 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTH 60
T L + + DA ++QES PE L++K ++ +D + IL+SSTS+ L S +EH
Sbjct: 73 TDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAG 132
Query: 61 RSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNR 120
R + +VAHP+NPPY IP+VE+VPA WT+ + R + G PV L EI GF LNR
Sbjct: 133 RERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNR 192
Query: 121 IHG-LIGQAWAMI 132
+ G L+ +A+ ++
Sbjct: 193 LQGALLREAFRLV 205
>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding
domain. This family also includes lambda crystallin.
Length = 180
Score = 158 bits (401), Expect = 4e-48
Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G +G A +FA AG +V L D+ E +E A+ I+ +L +KG + +
Sbjct: 8 GTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEE-DADAVLAR 66
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
IS T L + DA + E+VPE L +K +++ +D + IL+S+TSS + L+
Sbjct: 67 ISFTTDLAD-AVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSITELAAA 125
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
+ +FI H NPP +PLVE+V TS + + +IG
Sbjct: 126 TKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKT 173
Score = 119 bits (302), Expect = 2e-33
Identities = 33/100 (33%), Positives = 52/100 (52%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 67
DA + E+VPE L +K +++ +D + IL+S+TSS + L+ + +FI
Sbjct: 76 AVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSITELAAATKRPERFIGL 135
Query: 68 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107
H NPP +PLVE+V TS + + +IG PV
Sbjct: 136 HFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPV 175
>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism].
Length = 307
Score = 154 bits (391), Expect = 4e-45
Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G++G A +FA AGY V L D+ E +E A I+ L+ +KG L +
Sbjct: 12 GVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEE-EADAALAR 70
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
I+ T L L+DA + E+V E L++K QV+ ++ + IL+S+TSS + L+E
Sbjct: 71 ITPTTDL-AALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEA 129
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGM 289
+FI H NP +PLVE++ TS+ + R E +IG
Sbjct: 130 LKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGK 176
Score = 121 bits (307), Expect = 9e-33
Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 2/128 (1%)
Query: 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 65
L+DA + E+V E L++K QV+ ++ + IL+S+TSS + L+E +FI
Sbjct: 78 AALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFI 137
Query: 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI-HGL 124
H NP +PLVE++ TS+ + R E +IG PV + ++ GF +NR+ L
Sbjct: 138 GLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPV-VVKDVPGFIVNRLLAAL 196
Query: 125 IGQAWAMI 132
+ +A ++
Sbjct: 197 LNEAIRLL 204
>gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA
dehydrogenase/thioesterase; Validated.
Length = 495
Score = 131 bits (331), Expect = 5e-35
Identities = 68/169 (40%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQK-GCLKGSLSPEEQFG 181
G+IG WA F AG V+++D E A+ I L + + L + P E G
Sbjct: 13 GVIGGGWAARFLLAGIDVAVFDPHPE----AERIIGEVLANAERAYAMLTDAPLPPE--G 66
Query: 182 LISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSE 241
++ L E + A +IQESVPE L +K +V ID + ++ SSTS FLPS L E
Sbjct: 67 RLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE 126
Query: 242 HSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
TH + VAHP NP Y +PLVE+V TS I R +EI+ EIGMK
Sbjct: 127 GMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREIGMK 175
Score = 127 bits (321), Expect = 1e-33
Identities = 56/118 (47%), Positives = 71/118 (60%)
Query: 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ 63
L E + A +IQESVPE L +K +V ID + ++ SSTS FLPS L E TH +
Sbjct: 74 LAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPER 133
Query: 64 FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
VAHP NP Y +PLVE+V TS I R +EI+ EIGMKPV + EI F +R+
Sbjct: 134 LFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIAKEIDAFVGDRL 191
>gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 321
Score = 98.0 bits (244), Expect = 9e-24
Identities = 40/120 (33%), Positives = 65/120 (54%)
Query: 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHR 61
+ C+ DA FIQES PE +K +++ I + I++SSTS LP+ +TH
Sbjct: 75 ATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHP 134
Query: 62 SQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+ +V HP NP Y +PLVE++ T+ + I +GM+P+ + E+ GF +R+
Sbjct: 135 ERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRL 194
Score = 92.2 bits (229), Expect = 1e-21
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 107 VTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYD-------VLSEQIENAKNTIQH 159
+ + T+I+ FA G+IG W + G V +D L + NA ++
Sbjct: 1 MAVITDIKTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALE- 58
Query: 160 TLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDI 219
+ L+P + + C+ DA FIQES PE +K +++ I
Sbjct: 59 -----------RQGLAPGASPARLRFVATIEACVADADFIQESAPEREALKLELHERISR 107
Query: 220 FMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITR 279
+ I++SSTS LP+ +TH + +V HP NP Y +PLVE++ T+ +
Sbjct: 108 AAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDA 167
Query: 280 TREIMTEIGMK 290
I +GM+
Sbjct: 168 AMGIYRALGMR 178
>gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 314
Score = 97.4 bits (243), Expect = 1e-23
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 65
+ L DA + E+VPE+L K + R + + ++ I++S+TS+FL + L H H +F+
Sbjct: 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFL 134
Query: 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLI 125
AH +NP Y +PLVE+ P+ T V+ R ++ IG PV G+ + RI
Sbjct: 135 NAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPS-PGYIVPRI---- 189
Query: 126 GQAWAM 131
QA AM
Sbjct: 190 -QALAM 194
Score = 91.7 bits (228), Expect = 2e-21
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 20/180 (11%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLIS 184
+GQ A+ FA AG+ V+L D + + ++ +L+ G I
Sbjct: 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAE------IERTLAALVALGRID 54
Query: 185 GT---PVLR-----------ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 230
VL + L DA + E+VPE+L K + R + + ++ I++S+
Sbjct: 55 AAQADAVLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIAST 114
Query: 231 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
TS+FL + L H H +F+ AH +NP Y +PLVE+ P+ T V+ R ++ IG
Sbjct: 115 TSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKV 174
>gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 311
Score = 96.4 bits (240), Expect = 3e-23
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 6/168 (3%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G +G A +FA G +V L DV+ +E A+ I+ G G
Sbjct: 13 GTMGSGIAALFARKGLQVVLIDVMEGALERARGVIER------ALGVYAPLGIASAGMGR 66
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
I L + A + E+VPE L++K V+ +D +TI +++TS + +++
Sbjct: 67 IRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQA 126
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
T +F+ H P IPLVE+V TS + + T ++ IG +
Sbjct: 127 VTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKR 174
Score = 94.8 bits (236), Expect = 1e-22
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 10 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 69
A + E+VPE L++K V+ +D +TI +++TS + +++ T +F+ H
Sbjct: 79 GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHF 138
Query: 70 VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI-HGLIGQA 128
P IPLVE+V TS + + T ++ IG +PV + +I GF NRI H L +A
Sbjct: 139 FTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREA 198
Query: 129 WAMI 132
+++
Sbjct: 199 ISLL 202
>gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 288
Score = 91.0 bits (226), Expect = 2e-21
Identities = 41/169 (24%), Positives = 87/169 (51%), Gaps = 7/169 (4%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G++G+ A +FA +G++ +L D+ EQ+E+A+ I + G +G L+ +
Sbjct: 10 GVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQ----GVARGKLTEAARQAA 65
Query: 183 ISGTPV---LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239
++ L+ + DA + E+VPE L++K V+ D + ++++TS+ P+ +
Sbjct: 66 LARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEI 125
Query: 240 SEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+ + + I H NP + + LVE++ TS+ + +E+ ++G
Sbjct: 126 ASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMG 174
Score = 71.4 bits (175), Expect = 3e-14
Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ 63
L+ + DA + E+VPE L++K V+ D + ++++TS+ P+ ++ + +
Sbjct: 75 LKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPER 134
Query: 64 FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHG 123
I H NP + + LVE++ TS+ + +E+ ++G K + E GF +RI
Sbjct: 135 VIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMG-KETVVVNEFPGFVTSRISA 193
Query: 124 LIG 126
L+G
Sbjct: 194 LVG 196
>gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated.
Length = 291
Score = 88.4 bits (219), Expect = 2e-20
Identities = 57/171 (33%), Positives = 95/171 (55%), Gaps = 9/171 (5%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ---HTLQDYHQKGCLKGSLSPEEQ 179
G++GQ A +FA GY V++ DV E ++NA I+ + L++ +KG +S +E
Sbjct: 12 GVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKG----KMSEDEA 67
Query: 180 FGLIS--GTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS 237
+++ T E L DA FI E+VPE L +K +V+ ++ +S TI++S+TS + +
Sbjct: 68 KAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIA 127
Query: 238 VLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
++ + +FI H NP + L+E+V AA TSE T E+ +IG
Sbjct: 128 EIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIG 178
Score = 70.3 bits (172), Expect = 5e-14
Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 65
E L DA FI E+VPE L +K +V+ ++ +S TI++S+TS + + ++ + +FI
Sbjct: 81 ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFI 140
Query: 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNR 120
H NP + L+E+V AA TSE T E+ +IG P+ + ++ GF R
Sbjct: 141 GMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPIEV-ADVPGFFTTR 194
>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 287
Score = 87.7 bits (218), Expect = 3e-20
Identities = 45/167 (26%), Positives = 71/167 (42%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G++G A A G+ V++YD+ E +E AK I Y + E
Sbjct: 12 GVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNR 71
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
I+ T L E ++DA + E+VPE +IK Y + TI ++++S+ LPS +E
Sbjct: 72 ITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEA 131
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGM 289
+ +F+ H N + EI+ T V IGM
Sbjct: 132 TGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGM 178
Score = 75.4 bits (186), Expect = 7e-16
Identities = 35/119 (29%), Positives = 54/119 (45%)
Query: 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTH 60
T L E ++DA + E+VPE +IK Y + TI ++++S+ LPS +E +
Sbjct: 75 TTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGR 134
Query: 61 RSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALN 119
+F+ H N + EI+ T V IGM P+ L E G+ LN
Sbjct: 135 PEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILN 193
>gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase.
Length = 295
Score = 81.7 bits (202), Expect = 5e-18
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 8/169 (4%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---Q 179
G +G A + A+AG V L D + ++I +L + KG +S EE
Sbjct: 13 GQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLA----RLVKKGKMSQEEADAT 68
Query: 180 FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239
G I T L E L DA FI E++ E +K +++ +D + IL+S+TSS + L
Sbjct: 69 LGRIRCTTNLEE-LRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRL 127
Query: 240 SEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+ + Q I H +NPP + LVEI+ A TS+ V T+ + G
Sbjct: 128 ASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFG 176
Score = 73.6 bits (181), Expect = 4e-15
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 5 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQF 64
E L DA FI E++ E +K +++ +D + IL+S+TSS + L+ + Q
Sbjct: 78 LEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQV 137
Query: 65 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
I H +NPP + LVEI+ A TS+ V T+ + G K V + + GF +NRI
Sbjct: 138 IGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFG-KTVVCSQDYPGFIVNRI 193
>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Plays a minor role in aerobic beta-oxidation of fatty
acids. FadJI complex is necessary for anaerobic growth
on short-chain acids with nitrate as an electron
acceptor. Activities include: enoyl-CoA hydratase (EC
4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadJ (aka YfcX). This model
excludes the FadB of TIGR02437 equivalog model [Fatty
acid and phospholipid metabolism, Degradation].
Length = 699
Score = 68.7 bits (168), Expect = 6e-13
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 9/162 (5%)
Query: 123 GLIGQAWAMIFAS-AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE--- 178
GL+G A + A+ AG V + D+ + I NA +++ KG + ++P E
Sbjct: 313 GLMGGGIASVTATKAGIPVRIKDINPQGINNA---LKYAW-KLLDKGVKRRHMTPAERDN 368
Query: 179 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV 238
Q LI+GT R +D + E+V E L +KHQ+ + I+ +++TI +S+TSS
Sbjct: 369 QMALITGTTDYRG-FKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQ 427
Query: 239 LSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRT 280
++ ++ I H +P +PLVE++P A TSE+ I T
Sbjct: 428 IAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATT 469
Score = 64.1 bits (156), Expect = 2e-11
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 67
+D + E+V E L +KHQ+ + I+ +++TI +S+TSS ++ ++ I
Sbjct: 382 FKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGL 441
Query: 68 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H +P +PLVE++P A TSE+ I T + + G P+ + + GF +NRI
Sbjct: 442 HYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKA-GFYVNRI 494
>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 292
Score = 64.6 bits (158), Expect = 5e-12
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 10/170 (5%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ--- 179
G +G A + A AGY V L DV ++++E TI L + KG +S E +
Sbjct: 13 GQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNL----ARQVAKGKISEEARAAA 68
Query: 180 FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239
IS L + L D + E+ E +K +++ + + IL+++TSS + L
Sbjct: 69 LARISTATDLED-LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRL 127
Query: 240 SEHSTHRSQ-FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+ +T R + FI H +NP + LVE++ T E +E +T++G
Sbjct: 128 AS-ATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLG 176
Score = 40.4 bits (95), Expect = 5e-04
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ-FIV 66
L D + E+ E +K +++ + + IL+++TSS + L+ +T R + FI
Sbjct: 81 LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS-ATDRPERFIG 139
Query: 67 AHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H +NP + LVE++ T E +E +T++G K +T+ + F +NRI
Sbjct: 140 IHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLG-KTITVAEDFPAFIVNRI 193
>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 286
Score = 64.6 bits (158), Expect = 5e-12
Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 11/170 (6%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ--- 179
G +G A + A AG V +++ E +N I+ +L+ + +G L+ E+
Sbjct: 14 GQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLE----RAVSRGKLTERERDAA 69
Query: 180 FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAID-IFMSSNTILSSSTSSFLPSV 238
+ T L + D + E+V E +K +++ +D + + +L+S+TSS +P +
Sbjct: 70 LARLRFTTDLGD-FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS-IPIM 127
Query: 239 LSEHSTHRSQFIVA-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEI 287
+T R ++ H NP +PLVE+VP TSE + R E +++
Sbjct: 128 KLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDV 177
Score = 57.7 bits (140), Expect = 1e-09
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAID-IFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIV 66
D + E+V E +K +++ +D + + +L+S+TSS +P + +T R ++
Sbjct: 82 FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS-IPIMKLAAATKRPGRVL 140
Query: 67 A-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALN 119
H NP +PLVE+VP TSE + R E +++ K V + GF +N
Sbjct: 141 GLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGFVVN 194
>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 282
Score = 62.3 bits (152), Expect = 3e-11
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 10/170 (5%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ--- 179
G +G A + A AGY V + D+ ++ TI +L + KG ++ ++
Sbjct: 12 GTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLD----RLVKKGKMTEADKEAA 67
Query: 180 FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239
I+GT L + L+DA + E+ E + +K +++ +D IL+++TSS L
Sbjct: 68 LARITGTTDL-DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS-LSITE 125
Query: 240 SEHSTHR-SQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+T R + I H NP + LVEI+ TS+ + +IG
Sbjct: 126 LAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIG 175
Score = 55.4 bits (134), Expect = 6e-09
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHR-SQF 64
+ L+DA + E+ E + +K +++ +D IL+++TSS L +T R +
Sbjct: 78 DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS-LSITELAAATKRPDKV 136
Query: 65 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
I H NP + LVEI+ TS+ + +IG PV + GF +NRI
Sbjct: 137 IGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEV-KNAPGFVVNRI 192
>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 708
Score = 58.8 bits (143), Expect = 1e-09
Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 11/163 (6%)
Query: 123 GLIGQAWAMIFAS-AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE--- 178
GL+G A + A+ AG V + D+ + I +A L K + L P E
Sbjct: 318 GLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLD----KKVKRRHLKPSERDK 373
Query: 179 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-S 237
Q LISGT R + A + E+V E L +K Q+ ++ + +TI +S+TSS LP
Sbjct: 374 QMALISGTTDYRG-FKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS-LPIG 431
Query: 238 VLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRT 280
++ + Q I H +P +PLVE++P A TS I T
Sbjct: 432 QIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATT 474
Score = 55.3 bits (134), Expect = 1e-08
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 16 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFIVAHPVNPPY 74
E+V E L +K Q+ ++ + +TI +S+TSS LP ++ + Q I H +P
Sbjct: 395 EAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS-LPIGQIAAAAARPEQVIGLHYFSPVE 453
Query: 75 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+PLVE++P A TS I T + + G P+ + GF +NRI
Sbjct: 454 KMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGA-GFYVNRI 499
>gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC.
This 3-hydroxyacyl-CoA dehydrogenase is involved in the
degradation of phenylacetic acid, presumably in steps
following the opening of the phenyl ring. The sequences
included in this model are all found in aparrent operons
with other related genes such as paaA, paaB, paaD, paaE,
paaF and paaN. Some genomes contain these other genes
without an apparent paaC in the same operon - possibly
in these cases a different dehydrogenase involved in
fatty acid degradation may fill in the needed activity.
This enzyme has domains which are members of the
pfam02737 and pfam00725 families.
Length = 503
Score = 56.5 bits (136), Expect = 4e-09
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 4/156 (2%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G +G A + ASAG++V LYD+ +E + A I+ L KG L E + L
Sbjct: 14 GAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAE---ECERTL 70
Query: 183 ISGTPVLR-ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSE 241
PV L DA + E++ E L++K ++ ++ ++TI++S+TSS + ++
Sbjct: 71 KRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA 130
Query: 242 HSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVI 277
+ H NP + LVE+V T+ V
Sbjct: 131 GLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVA 166
Score = 43.8 bits (103), Expect = 6e-05
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 65
L DA + E++ E L++K ++ ++ ++TI++S+TSS + ++ +
Sbjct: 80 HALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVA 139
Query: 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H NP + LVE+V T+ V + E G +PV GF +NR+
Sbjct: 140 GLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVH-CHSTPGFIVNRV 194
>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated.
Length = 507
Score = 54.5 bits (132), Expect = 2e-08
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 12/162 (7%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE-QFG 181
G +G A + A AG+ V LYD + A++ I L K KG L+ E+
Sbjct: 16 GAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARL----AKLVEKGKLTAEQADAA 71
Query: 182 LISGTPV--LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239
L PV L + L D + E++ E L +K ++ ++ +S + IL+++TSS S+
Sbjct: 72 LARLRPVEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSL--SIT 128
Query: 240 SEHSTHRSQFIVA--HPVNPPYFIPLVEIVPAAWTSERVITR 279
+ + + VA H NP + LVE+V T V
Sbjct: 129 AIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADA 170
Score = 40.2 bits (95), Expect = 8e-04
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 67
L D + E++ E L +K ++ ++ +S + IL+++TSS S+ + + + VA
Sbjct: 84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSL--SITAIAAALKHPERVA 141
Query: 68 --HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H NP + LVE+V T V + G PV + GF +NR
Sbjct: 142 GLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPV-RAKDTPGFIVNRA 196
>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Activities include: enoyl-CoA hydratase (EC 4.2.1.17),
dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8),
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadB. This model excludes the
FadJ family represented by SP:P77399 [Fatty acid and
phospholipid metabolism, Degradation].
Length = 714
Score = 52.5 bits (126), Expect = 1e-07
Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 14 IQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPP 73
+ E+V E ++K V ++ + + IL+S+TS+ S+L++ F H NP
Sbjct: 396 VVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPV 455
Query: 74 YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+ +PLVE++ +S+ I +++G P+ + + GF +NR+
Sbjct: 456 HRMPLVEVIRGEKSSDETIATVVAYASKMGKTPI-VVNDCPGFFVNRV 502
Score = 51.7 bits (124), Expect = 2e-07
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 6/160 (3%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G++G A AS G + + D+ ++ L K +G ++P + G+
Sbjct: 322 GIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLN----KQVERGRITPAKMAGV 377
Query: 183 ISG-TPVLREC-LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS 240
++G TP L ++ + E+V E ++K V ++ + + IL+S+TS+ S+L+
Sbjct: 378 LNGITPTLSYAGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLA 437
Query: 241 EHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRT 280
+ F H NP + +PLVE++ +S+ I
Sbjct: 438 KALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATV 477
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 50.6 bits (122), Expect = 4e-07
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 171 KGSLSPEEQFGLISG-TPVLR-ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228
+G + + G++S P L E + E+V E ++K V ++ + +TIL+
Sbjct: 366 RGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILA 425
Query: 229 SSTSSFLPSVLSEHSTHRSQ-FIVAHPVNPPYFIPLVEIVPAAWTSERVITRT 280
S+TS+ S+L++ + R + F H NP + +PLVE++ TS+ I
Sbjct: 426 SNTSTISISLLAK-ALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATV 477
Score = 47.9 bits (115), Expect = 3e-06
Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ-FIV 66
E + E+V E ++K V ++ + +TIL+S+TS+ S+L++ + R + F
Sbjct: 390 FERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK-ALKRPENFCG 448
Query: 67 AHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H NP + +PLVE++ TS+ I +++G P+ + + GF +NR+
Sbjct: 449 MHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPI-VVNDCPGFFVNRV 502
>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha
subunit, mitochondrial. Members represent alpha subunit
of mitochondrial multifunctional fatty acid degradation
enzyme complex. Subunit activities include: enoyl-CoA
hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA
dehydrogenase (EC 1.1.1.35). Some characterization in
human , pig , and rat. The beta subunit has activity:
acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Length = 737
Score = 47.1 bits (112), Expect = 6e-06
Identities = 33/155 (21%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GL+G A + G K L D ++ + + L ++ + SL +
Sbjct: 344 GLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKIT-SLERDSILSN 402
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
++ T + ++A + E+V E L +KH+V + ++ + + I++S+TS+ ++
Sbjct: 403 LTPT-LDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAV 461
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVI 277
S+ + I H +P + L+EI+ TS+ +
Sbjct: 462 SSRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTL 496
Score = 38.7 bits (90), Expect = 0.003
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 67
++A + E+V E L +KH+V + ++ + + I++S+TS+ ++ S+ + I
Sbjct: 412 FKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGM 471
Query: 68 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHG 123
H +P + L+EI+ TS+ + + + G K V + + GF R G
Sbjct: 472 HYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQG-KVVIVVKDGPGFYTTRCLG 526
>gnl|CDD|220077 pfam08938, DUF1916, Domain of unknown function (DUF1916). This
domain is found in various eukaryotic HBS1-like
proteins.
Length = 148
Score = 32.8 bits (75), Expect = 0.087
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 173 SLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNT---ILSS 229
L +Q L S +RE L D++ + V +L+ V +A+D ++S T S
Sbjct: 80 QLDELDQARLYSCLDEMREVLGDSVSDRTLVEAVLKHDFDVQKALDEILNSETNQPASSK 139
Query: 230 STSSFLPSV 238
S
Sbjct: 140 SKKEDAIKA 148
Score = 27.8 bits (62), Expect = 4.7
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNT---ILSSSTSSFLPSV 53
+RE L D++ + V +L+ V +A+D ++S T S S
Sbjct: 96 MREVLGDSVSDRTLVEAVLKHDFDVQKALDEILNSETNQPASSKSKKEDAIKA 148
>gnl|CDD|223318 COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 329
Score = 31.8 bits (73), Expect = 0.37
Identities = 32/131 (24%), Positives = 46/131 (35%), Gaps = 29/131 (22%)
Query: 126 GQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG 185
G A A + A G++V L+ E + T Y L G L P +
Sbjct: 13 GTALAKVLARNGHEVRLWGRDEEIVAEINET--RENPKY-----LPGILLPPN----LKA 61
Query: 186 TPVLRECLEDAIFIQESVPEILQIKHQVYRAI----DIFMSSNTILSSSTSSFLPSVLSE 241
T L E L+ A I +VP Q R + + + I+ S+T E
Sbjct: 62 TTDLAEALDGADIIVIAVP------SQALREVLRQLKPLLLKDAIIVSATKGL------E 109
Query: 242 HSTHR--SQFI 250
T R S+ I
Sbjct: 110 PETGRLLSEII 120
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family. Phototropism of Arabidopsis thaliana
seedlings in response to a blue light source is
initiated by nonphototropic hypocotyl 1 (NPH1), a
light-activated serine-threonine protein kinase.
Mutations in NPH3 disrupt early signaling occurring
downstream of the NPH1 photoreceptor. The NPH3 gene
encodes a NPH1-interacting protein. NPH3 is a member of
a large protein family, apparently specific to higher
plants, and may function as an adapter or scaffold
protein to bring together the enzymatic components of a
NPH1-activated phosphorelay.
Length = 249
Score = 30.3 bits (69), Expect = 1.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 16 ESVPEILQIKH-QVYRAIDIFMSSNTILSSS 45
E+VP+ + H +YRAIDI++ ++ LS S
Sbjct: 200 EAVPDSARPSHDGLYRAIDIYLKAHPNLSES 230
Score = 30.3 bits (69), Expect = 1.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 201 ESVPEILQIKH-QVYRAIDIFMSSNTILSSS 230
E+VP+ + H +YRAIDI++ ++ LS S
Sbjct: 200 EAVPDSARPSHDGLYRAIDIYLKAHPNLSES 230
>gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Validated.
Length = 246
Score = 29.7 bits (68), Expect = 1.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG+A A+ A+ G KV +YD E E ++
Sbjct: 17 IGRAIALRLAADGAKVVIYDSNEEAAEALAAELR 50
>gnl|CDD|215128 PLN02211, PLN02211, methyl indole-3-acetate methyltransferase.
Length = 273
Score = 29.9 bits (67), Expect = 1.5
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 101 EIGMKPVTLTTEIRGFALNRIHGLIGQAWAM-----IFASAGYKVSLYDVLSEQIENAKN 155
E G + + + IHG+ G +W + ++GYKV+ D+ S I+ +
Sbjct: 4 ENGEEVTDMKPNRQPPHFVLIHGISGGSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSDA 63
Query: 156 TIQHTLQDYHQ 166
T +Y++
Sbjct: 64 DSVTTFDEYNK 74
>gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases,
including levodione reductase, classical (c) SDRs.
Cyloclohexanol reductases,including
(6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione)
reductase of Corynebacterium aquaticum, catalyze the
reversible oxidoreduction of hydroxycyclohexanone
derivatives. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 257
Score = 29.4 bits (66), Expect = 1.8
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ----- 179
+G A A+ A G K+SL D+ E +E AK + D +K +S E Q
Sbjct: 15 LGLATAVRLAKEGAKLSLVDLNEEGLEAAKAALLEIAPDAEVL-LIKADVSDEAQVEAYV 73
Query: 180 ------FGLISG 185
FG I G
Sbjct: 74 DATVEQFGRIDG 85
>gnl|CDD|236210 PRK08267, PRK08267, short chain dehydrogenase; Provisional.
Length = 260
Score = 29.1 bits (66), Expect = 2.4
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 125 IGQAWAMIFASAGYKVSLYDV 145
IG+A A++FA+ G++V YD+
Sbjct: 13 IGRATALLFAAEGWRVGAYDI 33
>gnl|CDD|215878 pfam00362, Integrin_beta, Integrin, beta chain. Integrins have
been found in animals and their homologues have also
been found in cyanobacteria, probably due to horizontal
gene transfer. The sequences repeats have been trimmed
due to an overlap with EGF.
Length = 424
Score = 29.1 bits (66), Expect = 2.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 132 IFASAGYKVSLYDVLSEQIENA 153
IFA V LY+ LSE I +
Sbjct: 295 IFAVTENVVDLYEELSELIPGS 316
>gnl|CDD|215789 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine
dehydrogenase.
Length = 237
Score = 28.6 bits (65), Expect = 3.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 86 WTSERVITRTREIMTEI 102
WT E V + +IMT I
Sbjct: 186 WTEEEVDEKLEKIMTNI 202
Score = 28.6 bits (65), Expect = 3.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 271 WTSERVITRTREIMTEI 287
WT E V + +IMT I
Sbjct: 186 WTEEEVDEKLEKIMTNI 202
>gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate
dehydrogenase N-terminus. NAD-dependent
glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the
interconversion of dihydroxyacetone phosphate and
L-glycerol-3-phosphate. This family represents the
N-terminal NAD-binding domain.
Length = 157
Score = 28.0 bits (63), Expect = 3.8
Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 17/95 (17%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G G A A + A G++V L+ E IE T Y L G P+
Sbjct: 8 GSWGTALAKVLARNGHEVRLWGRDEELIEEINTT--RENVKY-----LPGIKLPDN---- 56
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAI 217
+ T L E ++ A I +VP Q R +
Sbjct: 57 LRATTDLEEAIKGADIIVLAVP------SQALREV 85
>gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9. This subgroup has
the canonical active site tetrad and NAD-binding motif
of the classical SDRs. SDRs are a functionally diverse
family of oxidoreductases that have a single domain with
a structurally conserved Rossmann fold (alpha/beta
folding pattern with a central beta-sheet), an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering). In addition to the
Tyr and Lys, there is often an upstream Ser (Ser-138,
15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH
numbering) contributing to the active site; while
substrate binding is in the C-terminal region, which
determines specificity. The standard reaction mechanism
is a 4-pro-S hydride transfer and proton relay involving
the conserved Tyr and Lys, a water molecule stabilized
by Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P)-binding motif and missing or
unusual active site residues. Reactions catalyzed within
the SDR family include isomerization, decarboxylation,
epimerization, C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 227
Score = 28.2 bits (63), Expect = 4.5
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159
IG+ A++FA G+ V LYD+ + + +
Sbjct: 12 IGRETALLFARNGWFVGLYDIDEDGLAALAAELGA 46
>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase;
Provisional.
Length = 377
Score = 28.0 bits (63), Expect = 6.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 123 GLIGQAWAMIFASAGYKVSLYD 144
GLIG AM AG V+L D
Sbjct: 150 GLIGTELAMDLCRAGKAVTLVD 171
>gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional.
Length = 287
Score = 27.7 bits (62), Expect = 6.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENA 153
G A+A I A+ G K+ L DV + ++ A
Sbjct: 18 FGLAFARIGAALGMKLVLADVQQDALDRA 46
>gnl|CDD|223749 COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell
envelope biogenesis, outer membrane].
Length = 436
Score = 28.0 bits (63), Expect = 7.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTL 161
G +G A FASAG+KV D+ ++++ +
Sbjct: 18 GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIE 56
>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 82
Score = 26.0 bits (58), Expect = 7.3
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQK 167
G IG +A A G KV++ + + I LQ+ +K
Sbjct: 8 GYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEK 52
>gnl|CDD|224657 COG1743, COG1743, Adenine-specific DNA methylase containing a
Zn-ribbon [DNA replication, recombination, and repair].
Length = 875
Score = 27.8 bits (62), Expect = 8.5
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 18 VPEILQIKHQVYRAID-IFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFI 76
+ + ++ + + S L +T L + + IV +PPY+
Sbjct: 445 IDSVNRVLRALEYLPSALSGSVQVTLDDATEKVLSGSAGSLNLEKFDVIV---TDPPYY- 500
Query: 77 PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+ VP A S+ + I+ IG K + + T+ + FA + +
Sbjct: 501 ---DDVPYAELSDFFYVWLKRILGRIGGKWLEIATQWQEFAKDEV 542
>gnl|CDD|234629 PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Validated.
Length = 325
Score = 27.3 bits (62), Expect = 8.7
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 126 GQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG 185
G A A++ A G+ V+L+ EQ Y L G P+ +
Sbjct: 13 GTALAIVLARNGHDVTLWARDPEQAAEINAD--RENPRY-----LPGIKLPDN----LRA 61
Query: 186 TPVLRECLEDAIFIQESVP 204
T L E L DA I +VP
Sbjct: 62 TTDLAEALADADLILVAVP 80
>gnl|CDD|179085 PRK00668, ndk, mulitfunctional nucleoside diphosphate
kinase/apyrimidinic endonuclease/3'-; Validated.
Length = 134
Score = 26.6 bits (60), Expect = 9.7
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 24/68 (35%)
Query: 73 PYFIPLVE------IVPAAWTSERVITRTREIMTEIG------MKPVTLTTEIRG-FAL- 118
P+F LVE +V E I + RE+M G P T IRG FAL
Sbjct: 56 PFFGELVEFMTSGPVVVMVLEGENAIAKVRELM---GATNPAEAAPGT----IRGDFALS 108
Query: 119 ---NRIHG 123
N +HG
Sbjct: 109 IGENVVHG 116
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.386
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,942,971
Number of extensions: 1418963
Number of successful extensions: 1562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1537
Number of HSP's successfully gapped: 75
Length of query: 290
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 194
Effective length of database: 6,679,618
Effective search space: 1295845892
Effective search space used: 1295845892
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)