RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17416
(290 letters)
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 220 bits (562), Expect = 8e-71
Identities = 79/168 (47%), Positives = 104/168 (61%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GL+G++WAM+FAS G++V LYD+ QI A I+ ++ Q G LKGSLS EEQ L
Sbjct: 15 GLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSL 74
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
IS L E +E + IQE VPE L +K +++ +D + +LSSS+S LPS L
Sbjct: 75 ISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTG 134
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
H Q IVAHPVNPPY+IPLVE+VP TS + RT +M +IG
Sbjct: 135 LAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQS 182
Score = 176 bits (448), Expect = 9e-54
Identities = 59/133 (44%), Positives = 81/133 (60%), Gaps = 1/133 (0%)
Query: 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTH 60
L E +E + IQE VPE L +K +++ +D + +LSSS+S LPS L H
Sbjct: 78 CTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAH 137
Query: 61 RSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNR 120
Q IVAHPVNPPY+IPLVE+VP TS + RT +M +IG PV + EI GF LNR
Sbjct: 138 VKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNR 197
Query: 121 I-HGLIGQAWAMI 132
+ + +I +AW ++
Sbjct: 198 LQYAIISEAWRLV 210
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex,
oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP:
a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A*
1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A*
3hdh_A*
Length = 302
Score = 103 bits (258), Expect = 7e-26
Identities = 38/170 (22%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ--- 179
GL+G A + A+ G+ V L D + + +K I+ +L+ +K + + +E
Sbjct: 24 GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEK 83
Query: 180 -FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV 238
I+ + + + E++ E L++K+++++ +D F + +TI +S+TSS +
Sbjct: 84 TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS 143
Query: 239 LSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
++ +T + +F H NP + LVE++ TS++ + +G
Sbjct: 144 IANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG 193
Score = 79.1 bits (196), Expect = 2e-17
Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ 63
+ + E++ E L++K+++++ +D F + +TI +S+TSS + ++ +T + +
Sbjct: 94 AASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDR 153
Query: 64 FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
F H NP + LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 154 FAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVS-CKDTPGFIVNRL 210
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 103 bits (259), Expect = 3e-25
Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 8/169 (4%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ--- 179
G +G A + AS G++V LYD+ +E + A + I L +G L+ E
Sbjct: 14 GTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLN----SRVTRGKLTAETCERT 69
Query: 180 FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239
+ + L A + E+ E L++K ++ + T+L+++TSS + +
Sbjct: 70 LKRLIPVTDIHA-LAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAI 128
Query: 240 SEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+ + + H NP + LVE+V T+ V+ + E+ G
Sbjct: 129 AAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWG 177
Score = 78.9 bits (195), Expect = 8e-17
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 67
L A + E+ E L++K ++ + T+L+++TSS + ++ + +
Sbjct: 82 LAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGL 141
Query: 68 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H NP + LVE+V T+ V+ + E+ G +PV GF +NR+
Sbjct: 142 HFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVR-CHSTPGFIVNRV 194
Score = 46.6 bits (111), Expect = 5e-06
Identities = 15/103 (14%), Positives = 27/103 (26%), Gaps = 7/103 (6%)
Query: 19 PEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPL 78
+V + D + +L T L+ I +
Sbjct: 298 VSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVVIDKM------AGKV 351
Query: 79 VEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
V I AA + + + + G K V + G + R
Sbjct: 352 VTIAAAAVNPDSATRKAIYYLQQQG-KTVLQIADYPGMLIWRT 393
Score = 36.9 bits (86), Expect = 0.006
Identities = 11/85 (12%), Positives = 21/85 (24%), Gaps = 6/85 (7%)
Query: 204 PEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPL 263
+V + D + +L T L+ I +
Sbjct: 298 VSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVVIDKM------AGKV 351
Query: 264 VEIVPAAWTSERVITRTREIMTEIG 288
V I AA + + + + G
Sbjct: 352 VTIAAAAVNPDSATRKAIYYLQQQG 376
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 96.2 bits (240), Expect = 2e-22
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 10/162 (6%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---Q 179
GL+G A + Y V L +V + +E ++ LQ KGS+S E+
Sbjct: 321 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQ----SRVRKGSMSQEKFEKT 376
Query: 180 FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SV 238
L+ G+ D + E+V E + +K Q++ ++ + + IL+S+TS+ + +
Sbjct: 377 MSLLKGSLDYES-FRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST-IDLNK 434
Query: 239 LSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRT 280
+ E + + + + AH +P + +PL+EIV TS +VI
Sbjct: 435 IGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDL 476
Score = 73.1 bits (180), Expect = 1e-14
Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFIV 66
D + E+V E + +K Q++ ++ + + IL+S+TS+ + + + E + + + +
Sbjct: 389 FRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST-IDLNKIGERTKSQDRIVG 447
Query: 67 AHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
AH +P + +PL+EIV TS +VI ++ +I PV + GFA+NR+
Sbjct: 448 AHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPV-VVGNCTGFAVNRM 501
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 95.8 bits (239), Expect = 3e-22
Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 16/165 (9%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---Q 179
G++G A AS G + + D+ IE L KG ++P +
Sbjct: 323 GIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLV----GRVDKGRMTPAKMAEV 378
Query: 180 FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SV 238
I T + + + E+V E ++K V ++ + + IL+S+TS+ + S+
Sbjct: 379 LNGIRPTLSYGD-FGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST-ISISL 436
Query: 239 LSEHSTHRSQFIVAH---PVNPPYFIPLVEIVPAAWTSERVITRT 280
L++ F+ H PV+ +PLVE++ +S+ + T
Sbjct: 437 LAKALKRPENFVGMHFFNPVH---MMPLVEVIRGEKSSDLAVATT 478
Score = 70.3 bits (173), Expect = 9e-14
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFIV 66
+ + E+V E ++K V ++ + + IL+S+TS+ + S+L++ F+
Sbjct: 391 FGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST-ISISLLAKALKRPENFVG 449
Query: 67 AH---PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H PV+ +PLVE++ +S+ + T ++G P+ + + GF +NR+
Sbjct: 450 MHFFNPVH---MMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPI-VVNDCPGFLVNRV 503
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 94.6 bits (236), Expect = 5e-22
Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 14/163 (8%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE-QFG 181
G +G+ A+ FA G V + +Q++ AK I TL+ K + + +
Sbjct: 325 GTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLE----KEASRAHQNGQASAKP 380
Query: 182 LISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLS 240
+ + +E L + E+V E + +K +V+ + L ++TS+ L ++
Sbjct: 381 KLRFSSSTKE-LSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA-LNVDDIA 438
Query: 241 EHSTHRSQFIVAH---PVNPPYFIPLVEIVPAAWTSERVITRT 280
+ I H P + + L+E++P+ ++S I
Sbjct: 439 SSTDRPQLVIGTHFFSPAH---VMRLLEVIPSRYSSPTTIATV 478
Score = 71.9 bits (177), Expect = 2e-14
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFIV 66
L + E+V E + +K +V+ + L ++TS+ L ++ + I
Sbjct: 391 LSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA-LNVDDIASSTDRPQLVIG 449
Query: 67 AH---PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H P + + L+E++P+ ++S I + +IG V + GF NR+
Sbjct: 450 THFFSPAH---VMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV-VVGNCYGFVGNRM 503
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme
type 1, L-bifunction enzyme, MFE-1, fatty acid beta
oxidation; 1.90A {Rattus norvegicus}
Length = 463
Score = 93.5 bits (233), Expect = 8e-22
Identities = 34/167 (20%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ-FG 181
G +G+ A+ FA G V + +Q++ AK I TL+ K + + +
Sbjct: 46 GTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLE----KEASRAHQNGQASAKP 101
Query: 182 LISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSE 241
+ + +E L + E+V E + +K +V+ + L ++TS+ ++
Sbjct: 102 KLRFSSSTKE-LSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS 160
Query: 242 HSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+ I H +P + + L+E++P+ ++S I + +IG
Sbjct: 161 STDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIG 207
Score = 71.5 bits (176), Expect = 3e-14
Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 67
L + E+V E + +K +V+ + L ++TS+ ++ + I
Sbjct: 112 LSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGT 171
Query: 68 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI-HGLIG 126
H +P + + L+E++P+ ++S I + +IG V + GF NR+
Sbjct: 172 HFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV-VVGNCYGFVGNRMLAPYYN 230
Query: 127 QAWAMI 132
Q + ++
Sbjct: 231 QGFFLL 236
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: PE8; 2.00A {Archaeoglobus
fulgidus}
Length = 293
Score = 90.8 bits (226), Expect = 1e-21
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GL+G+ A+ A + ++V L DV + +E A+ I L
Sbjct: 21 GLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEEL------------------LSK 61
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
I T L E ++D + E+V E L K +V R ++ N L S+TS ++E
Sbjct: 62 IEFTTTL-EKVKDCDIVMEAVFEDLNTKVEVLREVERLT--NAPLCSNTSVISVDDIAER 118
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
S+F+ H +NPP+ +PLVEIV + +T + + + E+G
Sbjct: 119 LDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRELG 164
Score = 78.0 bits (193), Expect = 6e-17
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 65
E ++D + E+V E L K +V R ++ N L S+TS ++E S+F+
Sbjct: 69 EKVKDCDIVMEAVFEDLNTKVEVLREVERLT--NAPLCSNTSVISVDDIAERLDSPSRFL 126
Query: 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H +NPP+ +PLVEIV + +T + + + E+G + V +NR
Sbjct: 127 GVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCK---GQSLVNRF 179
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold,
oxidoreductase; 2.20A {Caenorhabditis elegans}
Length = 460
Score = 87.3 bits (217), Expect = 1e-19
Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 13/162 (8%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---Q 179
G +G+A A+ F AG + L ++ + + + L+ +
Sbjct: 63 GTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMY-------AREKSFKRLNDKRIEKI 115
Query: 180 FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SV 238
+ T + L + I ESV E +++K +++ ++ S I ++TSS L +
Sbjct: 116 NANLKITSDFHK-LSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSS-LDLNE 173
Query: 239 LSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRT 280
+S S + H NP I LVEI+ + TS + I
Sbjct: 174 ISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATA 215
Score = 71.9 bits (177), Expect = 2e-14
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFIV 66
L + I ESV E +++K +++ ++ S I ++TSS L + +S S +
Sbjct: 128 LSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSS-LDLNEISSVLRDPSNLVG 186
Query: 67 AHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI-HGLI 125
H NP I LVEI+ + TS + I + I PV L + F NR+ H
Sbjct: 187 IHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPV-LVGNCKSFVFNRLLHVYF 245
Query: 126 GQAWAMIFASAGYKVSLYDVLSEQIENA 153
Q+ ++ G L QI+
Sbjct: 246 DQSQKLM-YEYG-------YLPHQIDKI 265
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 4e-07
Identities = 49/321 (15%), Positives = 98/321 (30%), Gaps = 110/321 (34%)
Query: 6 EC--LED---AIFIQESVPEILQIKH---QVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 57
+C ++D +I +E + I+ K R +S F+ VL
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ---EEMVQKFVEEVL--- 87
Query: 58 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFA 117
Y + + T R+ P ++ T +
Sbjct: 88 -------------RINY----------KFLMSPIKTEQRQ--------P-SMMTRMYIEQ 115
Query: 118 LNRIHGLIGQAWAMIFASAGYKVS---LYDVLSE---QIENAKNTIQHTLQDYHQKGCLK 171
+R++ Q +FA Y VS Y L + ++ AKN + + G K
Sbjct: 116 RDRLYN-DNQ----VFAK--YNVSRLQPYLKLRQALLELRPAKNVLIDGV-----LGSGK 163
Query: 172 GSLSPEEQFGLISGTPVLR-----ECLEDAIF--------IQESVPEILQIKHQVYRAID 218
++ + V ++ IF E+V E+LQ ++ ID
Sbjct: 164 TWVALD----------VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ---KLLYQID 210
Query: 219 IFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSE---- 274
N S SS + + + + + PY L+ ++ ++
Sbjct: 211 ----PNWTSRSDHSSNIKLRIHSIQAELRRLL----KSKPYENCLL-VLLNVQNAKAWNA 261
Query: 275 -----R--VITRTREIMTEIG 288
+ + TR +++ +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLS 282
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 36.6 bits (84), Expect = 0.006
Identities = 17/142 (11%), Positives = 45/142 (31%), Gaps = 33/142 (23%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G +G + + ++ ++ E + + G+
Sbjct: 21 GKMGARITRKIHDSAHHLAAIEIAPEGRDRLQ------------------------GMGI 56
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
+++A + ++P+ + K V I + TI+ ++ + +
Sbjct: 57 PLTDGD--GWIDEADVVVLALPDNIIEK--VAEDIVPRVRPGTIVLILDAA---APYAGV 109
Query: 243 STHRSQ--FIVAHPVNPPYFIP 262
R+ + + HP +PP F
Sbjct: 110 MPERADITYFIGHPCHPPLFND 131
Score = 27.3 bits (60), Expect = 6.1
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ-- 63
+++A + ++P+ + K V I + TI+ ++ + + R+
Sbjct: 63 GWIDEADVVVLALPDNIIEK--VAEDIVPRVRPGTIVLILDAA---APYAGVMPERADIT 117
Query: 64 FIVAHPVNPPYFIP 77
+ + HP +PP F
Sbjct: 118 YFIGHPCHPPLFND 131
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 35.6 bits (83), Expect = 0.014
Identities = 33/187 (17%), Positives = 54/187 (28%), Gaps = 53/187 (28%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG + A G+ + E A + L
Sbjct: 9 GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV------------------------ERQL 44
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLS 240
+ L+ A I P I I + +S I++ +S + ++
Sbjct: 45 VDEAGQDLSLLQTAKIIFLCTP-IQLIL-PTLEKLIPHLSPTAIVTDVASVKT---AIAE 99
Query: 241 EHSTHRSQFIVAHP-----------------VNPPYFIPLVEIVPAAWTSERVITRTREI 283
S S FI HP VN PY + P +T + R +
Sbjct: 100 PASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYV-----LTPTEYTDPEQLACLRSV 154
Query: 284 MTEIGMK 290
+ +G+K
Sbjct: 155 LEPLGVK 161
Score = 29.8 bits (68), Expect = 0.84
Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 29/126 (23%)
Query: 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHSTHRSQ 63
L+ A I P I I + +S I++ +S + ++ S S
Sbjct: 53 SLLQTAKIIFLCTP-IQLIL-PTLEKLIPHLSPTAIVTDVASVKT---AIAEPASQLWSG 107
Query: 64 FIVAHP-----------------VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKP 106
FI HP VN PY + P +T + R ++ +G+K
Sbjct: 108 FIGGHPMAGTAAQGIDGAEENLFVNAPYVL-----TPTEYTDPEQLACLRSVLEPLGVKI 162
Query: 107 VTLTTE 112
T
Sbjct: 163 YLCTPA 168
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 34.3 bits (78), Expect = 0.037
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 10/80 (12%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLIS 184
G A+A A G V +D+ +++I+ ++ +
Sbjct: 15 GGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR--GAIIAEGPGL--------AGTAHPDL 64
Query: 185 GTPVLRECLEDAIFIQESVP 204
T + ++DA I VP
Sbjct: 65 LTSDIGLAVKDADVILIVVP 84
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 33.7 bits (77), Expect = 0.076
Identities = 11/93 (11%), Positives = 24/93 (25%), Gaps = 19/93 (20%)
Query: 179 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV 238
F L+S E + + +++Y+ + + N S + ++
Sbjct: 1014 LFVLVSV----VEAFIASG---------ITDPYEMYKYVHVSEVGNCS--GSGMGGVSAL 1058
Query: 239 LSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAW 271
PV +AW
Sbjct: 1059 RGMFKD----RFKDEPVQNDILQESFINTMSAW 1087
Score = 31.0 bits (70), Expect = 0.50
Identities = 19/142 (13%), Positives = 34/142 (23%), Gaps = 40/142 (28%)
Query: 5 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQF 64
E + + +++Y+ + + N S + ++
Sbjct: 1021 VEAFIASG---------ITDPYEMYKYVHVSEVGNCS--GSGMGGVSALRGMFKD----R 1065
Query: 65 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK-----PV----TLTTEIRG 115
PV +AW M I PV T +
Sbjct: 1066 FKDEPVQNDILQESFINTMSAWV----------NMLLISSSGPIKTPVGACATSVESV-D 1114
Query: 116 FALNRIHGLIGQAWAMIFASAG 137
+ I L G+A I G
Sbjct: 1115 IGVETI--LSGKARICI---VG 1131
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 31.7 bits (73), Expect = 0.23
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG+A A FA V ++L +++ ++
Sbjct: 19 IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELR 52
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 31.4 bits (72), Expect = 0.30
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG+A A+ A+ G V ++E + I
Sbjct: 40 IGRATALALAADGVTVGALGRTRTEVEEVADEIV 73
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 31.0 bits (71), Expect = 0.42
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ 179
IG+ A++FA G V++ SE++E + I + Q + ++ E+
Sbjct: 18 IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDG 72
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 30.7 bits (70), Expect = 0.50
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG+A+A G KV+L D E K +
Sbjct: 19 IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALH 52
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 30.2 bits (69), Expect = 0.64
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG A A AG +V + D+ A ++
Sbjct: 25 IGLACVTALAEAGARVIIADLDEAMATKAVEDLR 58
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 29.9 bits (68), Expect = 0.97
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG++ A+IFA G +V++ +++E K I
Sbjct: 38 IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQIL 71
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 29.5 bits (67), Expect = 1.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG+A A++FA G KV++ +E++E + I
Sbjct: 18 IGRATAVLFAREGAKVTITGRHAERLEETRQQIL 51
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 29.5 bits (67), Expect = 1.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG A A+ A G ++L D+ E +E A+ +++
Sbjct: 19 IGLATALRLAEEGTAIALLDMNREALEKAEASVR 52
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976,
oxidoreductase, phospholipid biosynthesis; HET: EPE;
2.10A {Coxiella burnetii}
Length = 356
Score = 29.4 bits (67), Expect = 1.3
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 126 GQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG 185
G A A++ A G KV L+ S+ ++ + Y L PE +
Sbjct: 41 GTALALVLARKGQKVRLWSYESDHVDEMQAE--GVNNRY-----LPNYPFPET----LKA 89
Query: 186 TPVLRECLEDAIFIQESVP 204
L+ LE I VP
Sbjct: 90 YCDLKASLEGVTDILIVVP 108
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 29.5 bits (67), Expect = 1.4
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 121 IHGL--IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHT--------LQDYHQKGCL 170
+ GL IG +++FA G V D+ + I+ +N ++ G L
Sbjct: 16 VVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKL 75
Query: 171 KGSLSPEE 178
K S +PE
Sbjct: 76 KVSTTPEA 83
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 29.0 bits (66), Expect = 1.5
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
+G+A A+ A+ G K+SL DV SE +E +K +
Sbjct: 25 LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVL 58
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 29.2 bits (65), Expect = 1.6
Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 54/208 (25%)
Query: 12 IFIQESVPEILQIKHQ----VYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 67
++ ++++P++ Q KH + + + F L+E+ ++ I
Sbjct: 13 VWTKDNLPQMFQEKHNTKVGTWGKLTVL--------KGKLKFYE--LTENGDVIAEHIFT 62
Query: 68 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQ 127
P + F+ P AW RV + ++ +G + + IHG +
Sbjct: 63 -PESHIPFVE-----PQAWH--RVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVD 114
Query: 128 AWAMI------------------FASAGYKVSLYDVLSEQIENAKN-------TIQHTLQ 162
A +I + GY V+ +D I I L
Sbjct: 115 AAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALY 174
Query: 163 DYHQKGCLKGSLSPEEQFGLISGTPVLR 190
D + + +E + I T V
Sbjct: 175 DINA-------ANIQENYDFIVSTVVFM 195
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 29.0 bits (66), Expect = 1.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG+A A FA AG V + D+ SE E I+
Sbjct: 24 IGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIR 57
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 29.1 bits (66), Expect = 1.7
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG+ + A+ G+ +++ D L +Q E A TI+
Sbjct: 14 IGRGISEKLAADGFDIAVAD-LPQQEEQAAETIK 46
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 28.6 bits (65), Expect = 1.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IGQA+A A G V + D+ +E E I
Sbjct: 21 IGQAYAEALAREGAAVVVADINAEAAEAVAKQIV 54
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 29.1 bits (66), Expect = 1.8
Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 26/129 (20%)
Query: 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS---SSTSSFLPSVLSEHSTH 60
+ A I +VP I + + D+ + + I++ S+ + +
Sbjct: 60 FKVFAALADVIILAVP-IKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDK 118
Query: 61 RSQFIVAHP-----------------VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 103
QF+ +HP N Y P+ T I +++++ +
Sbjct: 119 PVQFVGSHPMAGSHKSGAVAANVNLFENAYYIF-----SPSCLTKPNTIPALQDLLSGLH 173
Query: 104 MKPVTLTTE 112
+ V +
Sbjct: 174 ARYVEIDAA 182
Score = 27.5 bits (62), Expect = 5.5
Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 53/191 (27%)
Query: 123 GLIGQ--AWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQF 180
GLIG A + YK+ Y+ + A +
Sbjct: 15 GLIGASLALGIKRDHPHYKIVGYNRSDRSRDIAL------------------------ER 50
Query: 181 GLI-SGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS---SSTSSFLP 236
G++ T + A I +VP I + + D+ + + I++ S+ +
Sbjct: 51 GIVDEATADFKVFAALADVIILAVP-IKKTIDFIKILADLDLKEDVIITDAGSTKYEIVR 109
Query: 237 SVLSEHSTHRSQFIVAHP-----------------VNPPYFIPLVEIVPAAWTSERVITR 279
+ QF+ +HP N Y P+ T I
Sbjct: 110 AAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIF-----SPSCLTKPNTIPA 164
Query: 280 TREIMTEIGMK 290
+++++ + +
Sbjct: 165 LQDLLSGLHAR 175
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase;
HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6
c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A*
1n1g_A*
Length = 366
Score = 29.1 bits (66), Expect = 1.9
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 11/79 (13%)
Query: 126 GQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG 185
G A AM+ + +V ++ + E++ + LKG I+
Sbjct: 27 GTALAMVLSKKCREVCVWHMNEEEVRLVNEK--RENVLF-----LKGVQLASN----ITF 75
Query: 186 TPVLRECLEDAIFIQESVP 204
T + + A I +P
Sbjct: 76 TSDVEKAYNGAEIILFVIP 94
>2o9u_X Monellin chain B and monellin chain A; alternative conformations,
3-10 polyproline II helix, plant protein; 1.15A
{Dioscoreophyllum cumminsii} SCOP: d.17.1.1 PDB: 3pxm_A
1m9g_A 3pyj_A 1fa3_A 1iv7_A 3q2p_A 1iv9_A 1mnl_A 1mol_A
1fuw_A 4mon_B 3mon_B 1krl_B 4mon_A 1krl_A 3mon_A 2q33_B*
2q33_A*
Length = 97
Score = 27.3 bits (60), Expect = 2.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 179 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY 214
Q+G ++ V+R C++ I+ E EI ++Q+Y
Sbjct: 29 QYGRLTFNKVIRPCMKKTIYENEGFREIKGYEYQLY 64
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 28.6 bits (65), Expect = 2.1
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG+A A+ G+ V++ D + + I
Sbjct: 14 IGKAIALRLVKDGFAVAIADYNDATAKAVASEIN 47
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 28.6 bits (65), Expect = 2.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG+ A+ FA+AG V + D+ ++ + + IQ
Sbjct: 23 IGKEIAITFATAGASVVVSDINADAANHVVDEIQ 56
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 28.5 bits (64), Expect = 2.2
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 40/132 (30%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G +G +A ++GY +S+ D + +
Sbjct: 31 GKLGGLFARYLRASGYPISILDREDWAVAES----------------------------- 61
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
+L D + + SVP I + + +++ N +L+ TS +
Sbjct: 62 -----ILANA--DVVIV--SVP-INLTL-ETIERLKPYLTENMLLADLTSVKREPLAKML 110
Query: 243 STHRSQFIVAHP 254
H + HP
Sbjct: 111 EVHTGAVLGLHP 122
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 28.7 bits (65), Expect = 2.2
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG A A+ GY+V L + +E + I
Sbjct: 19 IGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIM 52
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 27.9 bits (63), Expect = 3.3
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG+ A + A + V + ++ + I+
Sbjct: 56 IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK 89
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 28.1 bits (63), Expect = 3.4
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
+G + G KV++ D+ + I+ A T++
Sbjct: 20 VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLE 53
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 27.9 bits (63), Expect = 3.6
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENA 153
IG+A +FA G + D + A
Sbjct: 18 IGRAALDLFAREGASLVAVDREERLLAEA 46
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 27.9 bits (63), Expect = 3.9
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG+ A+ +A AG +V++ S+ ++ + I
Sbjct: 44 IGKKVALAYAEAGAQVAVAARHSDALQVVADEIA 77
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 27.9 bits (63), Expect = 4.0
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG+A ++ A G V+ D+ + +
Sbjct: 19 IGRAVSVRLAGEGATVAACDLDRAAAQETVRLLG 52
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 27.9 bits (63), Expect = 4.0
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQ 162
G A+ + AG+ V+ +D +Q + + + Q
Sbjct: 13 GGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQ 50
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 27.6 bits (62), Expect = 4.3
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
+G+ A ++ GY V + + ++ A I
Sbjct: 45 VGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIG 78
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 27.5 bits (62), Expect = 4.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG A A +A AG V+++ E A++ +
Sbjct: 46 IGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQK 79
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 27.5 bits (62), Expect = 4.6
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG+ A +AG V + +++ A ++
Sbjct: 23 IGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELE 56
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 27.5 bits (62), Expect = 4.8
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159
IG A G KV + + N + +
Sbjct: 26 IGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKI 60
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 27.5 bits (60), Expect = 4.9
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGC 169
G +G+ A+ A+ G+++ + E+ E + D G
Sbjct: 10 GNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGM 56
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 27.5 bits (62), Expect = 5.1
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG+A +FA G ++ D+ + A +
Sbjct: 17 IGRATLELFAKEGARLVACDIEEGPLREAAEAVG 50
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A
{Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Length = 335
Score = 27.5 bits (62), Expect = 5.5
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 126 GQAWAMIFASAGYKVSLY--DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLI 183
G A ++ G +V ++ + +E ++ ++ + L L+ E I
Sbjct: 12 GSALSVPLVDNGNEVRIWGTEFDTEILK--------SISAGREHPRLGVKLNGVE----I 59
Query: 184 SGTPVLRECLEDAIFIQESVP 204
L +CLE+A + V
Sbjct: 60 FWPEQLEKCLENAEVVLLGVS 80
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A
{Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Length = 142
Score = 26.7 bits (60), Expect = 5.9
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 21/68 (30%)
Query: 73 PYFIPLVE------IVPAAWTSERVITRTREIMTE------IGMKPVTLTTEIRG-FAL- 118
P+F LVE +V A E I R REI+ + P + IR F
Sbjct: 58 PFFQELVEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNS----IRAQFGTD 113
Query: 119 ---NRIHG 123
N IH
Sbjct: 114 KGKNAIHA 121
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 27.4 bits (60), Expect = 6.0
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 123 GLIGQAWAMIFASAGYKVSL 142
G +G+ A A G++V++
Sbjct: 28 GTVGRTMAGALADLGHEVTI 47
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 27.1 bits (61), Expect = 6.3
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG A G V + D ++ ++ +
Sbjct: 35 IGSTTARRALLEGADVVISDYHERRLGETRDQLA 68
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 27.1 bits (61), Expect = 6.7
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG A A +FA AG KV L+ + N TI
Sbjct: 19 IGLATARLFARAGAKVGLHGRKAP--ANIDETIA 50
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 26.9 bits (60), Expect = 6.8
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG A FA+ G+ V E++ I+
Sbjct: 19 IGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIE 52
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 27.1 bits (61), Expect = 6.8
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENA 153
G A A F + G +V+ D+ +E +E
Sbjct: 14 NGLAIATRFLARGDRVAALDLSAETLEET 42
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 27.2 bits (61), Expect = 7.0
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG A A S G +V L E++ + I
Sbjct: 41 IGAAIARKLGSLGARVVLTARDVEKLRAVEREIV 74
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase,
CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP:
a.100.1.1 c.2.1.6
Length = 478
Score = 27.3 bits (61), Expect = 7.4
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 123 GLIG-----QAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPE 177
G++G A+ A G+KV++++ + E G LK + E
Sbjct: 5 GVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMK----ANASAPFAGNLKAFETME 60
Query: 178 E 178
Sbjct: 61 A 61
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 26.8 bits (59), Expect = 7.8
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 123 GLIGQAWAMIFASAGYKVSLY 143
G ++ A +G+KV +
Sbjct: 37 GDFARSLATRLVGSGFKVVVG 57
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 26.7 bits (60), Expect = 7.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG+A A++FA G KV + + + I
Sbjct: 20 IGRAAALLFAREGAKVVVTARNGNALAELTDEIA 53
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 26.9 bits (60), Expect = 8.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG A A FA G ++ L DV +E A N ++
Sbjct: 43 IGLATATEFARRGARLVLSDVDQPALEQAVNGLR 76
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 26.7 bits (60), Expect = 8.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157
IG+A+A + G V++ D+ E+ A I
Sbjct: 20 IGRAFAEAYVREGATVAIADIDIERARQAAAEI 52
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 26.8 bits (60), Expect = 8.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIE 151
+G+A A+ A AGY V+L + ++
Sbjct: 40 VGRAVAVALAGAGYGVALAGRRLDALQ 66
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 26.7 bits (60), Expect = 8.7
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155
IG+ + F AG KV D+ ++ +
Sbjct: 14 IGKQICLDFLEAGDKVCFIDIDEKRSADFAK 44
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 26.7 bits (60), Expect = 8.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAK 154
IG+A A FA G V+L D+ E E A+
Sbjct: 18 IGRAIAQAFAREGALVALCDLRPEGKEVAE 47
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 26.7 bits (60), Expect = 9.2
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
+G++ A+ FA+ KV + E + A + ++
Sbjct: 19 LGKSMAIRFATEKAKVVVNYRSKE--DEANSVLE 50
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 26.5 bits (59), Expect = 9.6
Identities = 4/21 (19%), Positives = 6/21 (28%)
Query: 125 IGQAWAMIFASAGYKVSLYDV 145
+G F S + D
Sbjct: 34 LGAEVVKFFKSKSWNTISIDF 54
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 26.4 bits (59), Expect = 9.9
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157
IG A A AG V++ D+ + +
Sbjct: 24 IGAAIARALDKAGATVAIADLDVMAAQAVVAGL 56
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 26.7 bits (60), Expect = 10.0
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158
IG A FA G + ++ + Q
Sbjct: 26 IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQ 59
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 26.4 bits (59), Expect = 10.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENA 153
IG+ A +FA AG V++ + I+
Sbjct: 22 IGRGIATVFARAGANVAVAGRSTADIDAC 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.386
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,379,689
Number of extensions: 252992
Number of successful extensions: 731
Number of sequences better than 10.0: 1
Number of HSP's gapped: 718
Number of HSP's successfully gapped: 106
Length of query: 290
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 197
Effective length of database: 4,105,140
Effective search space: 808712580
Effective search space used: 808712580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.5 bits)