BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17417
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KR9|A Chain A, Kalirin Dh1 Nmr Structure
Length = 190
Score = 108 bits (269), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 51/80 (63%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSH-PNLPPGLVGKHDIIFGNIEEIRDFHRDIFL 59
MAELLQTE+ YV+DL C++ +L E S +PPG++ K IIFGNI+EI DFH +IFL
Sbjct: 17 MAELLQTEKAYVRDLHECLETYLWEMTSGVEEIPPGILNKEHIIFGNIQEIYDFHNNIFL 76
Query: 60 KELEKYENMPEDLGHCFVTW 79
KELEKYE +PED+GHCFVTW
Sbjct: 77 KELEKYEQLPEDVGHCFVTW 96
>pdb|2NZ8|B Chain B, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
Length = 313
Score = 105 bits (262), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSH-PNLPPGLVGKHDIIFGNIEEIRDFHRDIFL 59
MAEL+QTE+ YV+DL C+ +L E S +PPG+V K IIFGN++EI +FH +IFL
Sbjct: 16 MAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFL 75
Query: 60 KELEKYENMPEDLGHCFVTW 79
KELEKYE +PED+GHCFVTW
Sbjct: 76 KELEKYEQLPEDVGHCFVTW 95
>pdb|1NTY|A Chain A, Crystal Structure Of The First DhPH DOMAIN OF TRIO TO
1.7 A
Length = 311
Score = 105 bits (262), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSH-PNLPPGLVGKHDIIFGNIEEIRDFHRDIFL 59
MAEL+QTE+ YV+DL C+ +L E S +PPG+V K IIFGN++EI +FH +IFL
Sbjct: 14 MAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFL 73
Query: 60 KELEKYENMPEDLGHCFVTW 79
KELEKYE +PED+GHCFVTW
Sbjct: 74 KELEKYEQLPEDVGHCFVTW 93
>pdb|1RJ2|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|G Chain G, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|J Chain J, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
Length = 353
Score = 59.7 bits (143), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLP----PGLVGKHDIIFGNIEEIRDFHRD 56
M ELL TER YV++L ++ + E +P + GL K +I+FGN+EEI FH
Sbjct: 16 MNELLDTERAYVEELLCVLEGYAAE-MDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNR 74
Query: 57 IFLKELEKYENMPEDLGHCFV 77
IFL+ELE + PE +G CF+
Sbjct: 75 IFLRELESCIDCPELVGRCFL 95
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLP----PGLVGKHDIIFGNIEEIRDFHRD 56
M ELL TER YV++L ++ + E +P + GL K +I+FGN+EEI FH
Sbjct: 16 MNELLDTERAYVEELLCVLEGYAAE-MDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNR 74
Query: 57 IFLKELEKYENMPEDLGHCFV 77
IFL+ELE + PE +G CF+
Sbjct: 75 IFLRELESCIDCPELVGRCFL 95
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLP----PGLVGKHDIIFGNIEEIRDFHRD 56
M ELL TER YV++L ++ + E +P + GL K +I+FGN+EEI FH
Sbjct: 16 MNELLDTERAYVEELLCVLEGYAAE-MDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNR 74
Query: 57 IFLKELEKYENMPEDLGHCFV 77
IFL+ELE + PE +G CF+
Sbjct: 75 IFLRELESCIDCPELVGRCFL 95
>pdb|2RGN|B Chain B, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|E Chain E, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 354
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLK 60
++EL++TE+ YV DL ++ ++ + + +P L G+ I+FGNI++I ++HRD FL+
Sbjct: 17 LSELVETEKMYVDDLGQIVEGYMA-TMAAQGVPESLRGRDRIVFGNIQQIYEWHRDYFLQ 75
Query: 61 ELEKYENMPEDLGHCFV 77
EL++ P+ L F+
Sbjct: 76 ELQRCLKDPDWLAQLFI 92
>pdb|1KZ7|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|C Chain C, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
Length = 353
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRSHPN---LPPGLVGKHDIIFGNIEEIRDFHRDIFL 59
ELL TER YV++L ++ + E + + GL K +I+FGN EEI FH IFL
Sbjct: 18 ELLDTERAYVEELLCVLEGYAAEXDNPLXAHLISTGLQNKKNILFGNXEEIYHFHNRIFL 77
Query: 60 KELEKYENMPEDLGHCFV 77
+ELE + PE +G CF+
Sbjct: 78 RELESCIDCPELVGRCFL 95
>pdb|1FOE|A Chain A, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|C Chain C, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|E Chain E, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|G Chain G, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
Length = 377
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLK 60
+ ELL+TERTYVKDL+ + +L+ + L + D++FGN+ E +F + FLK
Sbjct: 16 ICELLETERTYVKDLNCLXERYLKPLQKETFLTQ---DELDVLFGNLTEXVEFQVE-FLK 71
Query: 61 ELEKYENMPEDL 72
LE + DL
Sbjct: 72 TLEDGVRLVPDL 83
>pdb|2DFK|A Chain A, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|C Chain C, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 402
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLK 60
+ E++ TER Y+K L + +L++ R ++ K +IFGNIE+I F F++
Sbjct: 46 INEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSDEQLK--VIFGNIEDIYRFQMG-FVR 102
Query: 61 ELEKYENMPE----DLGHCFV 77
+LEK N + ++G CF+
Sbjct: 103 DLEKQYNNDDPHLSEIGPCFL 123
>pdb|1BY1|A Chain A, Dbl Homology Domain From Beta-Pix
Length = 209
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLK 60
+ +L+TE Y K+L T + +L+ ++ L + + GN+EEI F + + ++
Sbjct: 18 LQNILETENEYSKELQTVLSTYLRPLQTSEKLSSANIS---YLMGNLEEICSFQQ-MLVQ 73
Query: 61 ELEKYENMPED---LGHCFVTWW 80
LE+ +PE +G CF+
Sbjct: 74 SLEECTKLPEAQQRVGGCFLNLM 96
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 33.1 bits (74), Expect = 0.038, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKEL 62
E+L TER Y+K L + ++++ R ++ + IFGNIE+I + F+K L
Sbjct: 125 EILSTERDYIKHLRDICEGYVRQCRKRADMFSE--EQLRTIFGNIEDIYRCQK-AFVKAL 181
Query: 63 EKYENMPE----DLGHCFV 77
E+ N +LG CF+
Sbjct: 182 EQRFNRERPHLSELGACFL 200
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKEL 62
E+L TER Y+K L + ++++ R + + IFGNIE+I + F+K L
Sbjct: 162 EILSTERDYIKHLRDICEGYVRQCRKRADXFSE--EQLRTIFGNIEDIYRCQK-AFVKAL 218
Query: 63 EKYENMPE----DLGHCFV 77
E+ N +LG CF+
Sbjct: 219 EQRFNRERPHLSELGACFL 237
>pdb|1TXD|A Chain A, Crystal Structure Of The Dh/ph Domains Of
Leukemia-associated Rhogef
pdb|1X86|A Chain A, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|C Chain C, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|E Chain E, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|G Chain G, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
Length = 385
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFH 54
EL TER +V+ L +VF Q L P + K IF N+E+I H
Sbjct: 31 ELFYTERAHVRTLKVLDQVFYQRVSREGILSPSELRK---IFSNLEDILQLH 79
>pdb|1VM6|A Chain A, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
pdb|1VM6|B Chain B, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
pdb|1VM6|C Chain C, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
pdb|1VM6|D Chain D, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
Length = 228
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRS-----HPNLPPGLVGKHDIIFGNI-EEIRDFHRD 56
E+++T + KD + + L+ + H G+ G H ++FGNI E I HR
Sbjct: 134 EIVETHHRFKKDAPSGTAILLESALGKSVPIHSLRVGGVPGDHVVVFGNIGETIEIKHRA 193
Query: 57 I 57
I
Sbjct: 194 I 194
>pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An
Exoribonuclease Involved In Structured Rna Processing
Length = 375
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 34 PGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENMPED 71
PG +G+ D + + EIR FH L +EK + +PED
Sbjct: 252 PGSLGELDSLGLSGSEIR-FHGKTLLALVEKAQTLPED 288
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEI 50
EL+QTE Y+ DL ++VF + L G + +IF N +E+
Sbjct: 105 ELIQTEERYMADLQLVVEVFQKRMAESGFLTEGEMA---LIFVNWKEL 149
>pdb|2PBE|A Chain A, Crystal Structure Of An Aminoglycoside
6-Adenyltransferase From Bacillus Subtilis
Length = 294
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 21 VFLQESRSHPNLPPGLVGKHDIIF--GNIEEIRD-------FHRDIFLKELEKYENMPED 71
V L+ SR++ N+PP +DI + ++E ++ F + I ++ E E P +
Sbjct: 26 VTLEGSRTNRNIPPDNFQDYDISYFVTDVESFKENDQWLEIFGKRIXXQKPEDXELFPPE 85
Query: 72 LGHCF 76
LG+ F
Sbjct: 86 LGNWF 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.143 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,902,064
Number of Sequences: 62578
Number of extensions: 113141
Number of successful extensions: 344
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 20
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)