Query psy17417
Match_columns 87
No_of_seqs 126 out of 1010
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 21:55:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00325 RhoGEF Guanine nucl 99.7 9.6E-18 2.1E-22 107.2 7.1 82 1-86 2-88 (180)
2 cd00160 RhoGEF Guanine nucleot 99.7 1.1E-17 2.5E-22 106.9 7.4 82 1-86 5-91 (181)
3 KOG3518|consensus 99.7 2E-17 4.2E-22 116.0 6.2 84 2-87 127-211 (521)
4 KOG4240|consensus 99.7 5.6E-17 1.2E-21 124.7 5.5 86 1-86 637-723 (1025)
5 PF00621 RhoGEF: RhoGEF domain 99.6 1.8E-15 3.9E-20 95.9 6.3 82 1-86 2-87 (180)
6 KOG0689|consensus 99.5 4.2E-15 9.2E-20 107.4 -1.0 83 1-84 67-149 (448)
7 KOG2996|consensus 99.5 1.3E-13 2.7E-18 102.1 6.7 80 1-86 202-283 (865)
8 KOG4424|consensus 99.4 1.3E-13 2.8E-18 101.4 5.3 79 1-87 71-149 (623)
9 KOG2070|consensus 99.4 7.7E-13 1.7E-17 96.3 6.9 81 1-85 106-189 (661)
10 KOG4305|consensus 99.4 4.8E-13 1E-17 103.6 4.4 85 1-86 340-428 (1029)
11 KOG3519|consensus 99.3 4.5E-12 9.7E-17 96.9 7.6 82 1-86 341-429 (756)
12 COG5422 ROM1 RhoGEF, Guanine n 99.2 1.4E-11 3E-16 94.4 4.7 84 2-86 490-577 (1175)
13 KOG3523|consensus 98.9 3.2E-09 7E-14 79.0 5.8 81 2-86 263-347 (695)
14 KOG3522|consensus 98.8 1E-08 2.3E-13 78.5 6.7 63 2-67 6-68 (925)
15 KOG3520|consensus 98.8 1.6E-08 3.5E-13 79.6 7.8 76 1-80 395-474 (1167)
16 KOG3521|consensus 98.7 3.3E-08 7.2E-13 74.5 5.8 85 1-87 182-277 (846)
17 KOG3531|consensus 97.9 8.1E-07 1.8E-11 68.5 -2.0 83 1-87 538-631 (1036)
18 KOG3524|consensus 95.7 0.011 2.4E-07 45.7 3.2 64 2-66 390-455 (850)
19 PF00611 FCH: Fes/CIP4, and EF 88.8 2.8 6E-05 23.4 5.9 58 2-61 33-90 (91)
20 cd07652 F-BAR_Rgd1 The F-BAR ( 81.8 9.6 0.00021 25.7 6.5 59 5-64 32-90 (234)
21 cd07655 F-BAR_PACSIN The F-BAR 76.4 19 0.00041 24.6 6.7 61 3-65 30-90 (258)
22 cd07658 F-BAR_NOSTRIN The F-BA 75.0 23 0.00049 24.0 6.7 56 5-64 32-87 (239)
23 cd07653 F-BAR_CIP4-like The F- 71.3 16 0.00035 24.4 5.3 63 2-65 29-91 (251)
24 KOG1241|consensus 71.1 9.3 0.0002 30.6 4.5 73 8-86 564-642 (859)
25 cd07680 F-BAR_PACSIN1 The F-BA 66.9 31 0.00067 23.9 6.0 57 5-63 32-88 (258)
26 PF12210 Hrs_helical: Hepatocy 51.0 51 0.0011 19.5 4.3 51 10-64 2-54 (96)
27 PF15219 TEX12: Testis-express 50.0 48 0.001 19.6 3.9 46 10-55 36-84 (100)
28 cd07681 F-BAR_PACSIN3 The F-BA 49.7 86 0.0019 21.8 6.7 58 5-64 32-89 (258)
29 cd07610 FCH_F-BAR The Extended 49.5 65 0.0014 20.3 5.3 60 3-66 25-84 (191)
30 PF03271 EB1: EB1-like C-termi 45.5 40 0.00087 16.8 3.8 21 5-26 2-23 (43)
31 COG5188 PRP9 Splicing factor 3 44.6 77 0.0017 23.4 5.1 48 3-50 2-51 (470)
32 PF03671 Ufm1: Ubiquitin fold 41.1 17 0.00037 20.5 1.1 15 70-84 60-74 (76)
33 cd07648 F-BAR_FCHO The F-BAR ( 37.4 1.2E+02 0.0025 20.6 5.0 57 2-64 29-85 (261)
34 PHA02891 hypothetical protein; 35.9 69 0.0015 19.2 3.2 39 22-63 79-119 (120)
35 cd07650 F-BAR_Syp1p_like The F 35.8 98 0.0021 20.7 4.4 60 2-65 29-88 (228)
36 cd06152 YjgF_YER057c_UK114_lik 35.0 28 0.00061 20.7 1.5 24 32-55 28-51 (114)
37 PF09660 DUF2397: Protein of u 34.3 94 0.002 23.5 4.4 50 36-86 145-194 (486)
38 cd07672 F-BAR_PSTPIP2 The F-BA 34.1 1.5E+02 0.0032 20.2 5.0 57 3-64 30-86 (240)
39 cd02198 YjgH_like YjgH belongs 31.6 39 0.00084 19.8 1.7 23 32-54 27-49 (111)
40 PF11267 DUF3067: Protein of u 31.3 57 0.0012 19.5 2.3 14 7-20 44-57 (99)
41 smart00055 FCH Fes/CIP4 homolo 31.0 97 0.0021 16.9 4.8 19 3-21 34-52 (87)
42 cd07673 F-BAR_FCHO2 The F-BAR 30.9 1.8E+02 0.0039 20.0 6.3 56 4-65 38-93 (269)
43 cd07649 F-BAR_GAS7 The F-BAR ( 30.2 1.8E+02 0.0038 19.7 6.3 57 3-65 30-86 (233)
44 PF08336 P4Ha_N: Prolyl 4-Hydr 29.8 1.1E+02 0.0023 18.6 3.5 18 2-19 7-24 (134)
45 cd06150 YjgF_YER057c_UK114_lik 29.5 40 0.00086 19.5 1.5 23 33-55 24-46 (105)
46 cd06155 eu_AANH_C_1 A group of 29.3 40 0.00087 19.4 1.5 23 33-55 21-43 (101)
47 cd07647 F-BAR_PSTPIP The F-BAR 27.6 1.9E+02 0.0042 19.3 5.7 58 3-66 30-87 (239)
48 cd07674 F-BAR_FCHO1 The F-BAR 27.4 2.1E+02 0.0045 19.5 6.1 54 5-64 32-85 (261)
49 PF04333 VacJ: VacJ like lipop 25.8 1.3E+02 0.0028 20.0 3.6 45 21-65 26-72 (200)
50 cd07679 F-BAR_PACSIN2 The F-BA 25.7 2.4E+02 0.0052 19.7 6.4 57 5-63 32-88 (258)
51 PF10372 YojJ: Bacterial membr 25.5 1.3E+02 0.0029 16.7 4.1 43 9-52 16-59 (70)
52 TIGR02677 conserved hypothetic 24.1 1.4E+02 0.0031 22.6 3.9 50 36-86 143-192 (494)
53 KOG0729|consensus 24.1 86 0.0019 22.7 2.6 21 5-25 405-425 (435)
54 KOG3524|consensus 23.5 2.2E+02 0.0048 23.1 4.9 61 2-63 400-462 (850)
55 cd07671 F-BAR_PSTPIP1 The F-BA 23.5 2.5E+02 0.0054 19.1 5.0 57 3-65 30-86 (242)
56 cd06153 YjgF_YER057c_UK114_lik 22.1 69 0.0015 19.1 1.6 24 32-55 30-53 (114)
57 KOG1760|consensus 21.7 45 0.00098 20.8 0.8 12 69-80 67-78 (131)
58 TIGR03610 RutC pyrimidine util 21.5 67 0.0015 19.4 1.5 23 33-55 45-67 (127)
59 PF11334 DUF3136: Protein of u 21.5 61 0.0013 17.7 1.2 20 1-20 3-22 (64)
60 cd06156 eu_AANH_C_2 A group of 21.2 74 0.0016 19.0 1.6 24 32-55 27-50 (118)
61 KOG1766|consensus 20.9 2E+02 0.0044 17.1 3.8 41 14-55 28-69 (104)
No 1
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=99.73 E-value=9.6e-18 Score=107.18 Aligned_cols=82 Identities=44% Similarity=0.697 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC----CcchHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHP-NLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM----PEDLGHC 75 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~-~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~----~~~ig~~ 75 (87)
|+||++||+.||++|+.+++.|+.|+.... .++. .+.+.||+|+++|+.+|+ .|+.+|+++... ...+|++
T Consensus 2 i~Eli~tE~~Yv~~L~~l~~~y~~~l~~~~~~~~~---~~~~~iF~~i~~i~~~h~-~~l~~l~~~~~~~~~~~~~i~~~ 77 (180)
T smart00325 2 LKELLQTERNYVRDLKLLVEVFLKPLKKELKLLSP---NELETLFGNIEEIYEFHR-DFLDELEERIEEWDDSPERIGDV 77 (180)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCH---HHHHHHhcCHHHHHHHHH-HHHHHHHHHHhcccccccHHHHH
Confidence 589999999999999999999999999875 3443 578999999999999999 699999998754 4689999
Q ss_pred HHhcccccCcC
Q psy17417 76 FVTWWWFVRPK 86 (87)
Q Consensus 76 Fl~~~~~f~~~ 86 (87)
|+++.+.|++|
T Consensus 78 f~~~~~~~~~Y 88 (180)
T smart00325 78 FLKLEEFFKIY 88 (180)
T ss_pred HHHhhHHHHHH
Confidence 99998888776
No 2
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=99.73 E-value=1.1e-17 Score=106.90 Aligned_cols=82 Identities=43% Similarity=0.671 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC----CcchHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPN-LPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM----PEDLGHC 75 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~-~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~----~~~ig~~ 75 (87)
++||++||++||++|+.+++.|+.|+.+... ++. .+...||+|+++|+++|+ .|+.+|+.+..+ +..+|+|
T Consensus 5 i~Eli~tE~~Yv~~L~~l~~~y~~~l~~~~~~~~~---~~~~~iF~~i~~i~~~h~-~~l~~l~~~~~~~~~~~~~i~~~ 80 (181)
T cd00160 5 IKELLQTERNYVRDLKLLVEVFLKPLDKELLPLSP---EEVELLFGNIEEIYEFHR-IFLKSLEERVEEWDKSGPRIGDV 80 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCH---HHHHHHhcCHHHHHHHHH-HHHHHHHHHHhccCcccchHHHH
Confidence 5799999999999999999999999998754 553 578999999999999999 699999998764 4689999
Q ss_pred HHhcccccCcC
Q psy17417 76 FVTWWWFVRPK 86 (87)
Q Consensus 76 Fl~~~~~f~~~ 86 (87)
|+++.+.|+.|
T Consensus 81 f~~~~~~~~~Y 91 (181)
T cd00160 81 FLKLAPFFKIY 91 (181)
T ss_pred HHHhhhHHHHH
Confidence 99999988776
No 3
>KOG3518|consensus
Probab=99.71 E-value=2e-17 Score=116.04 Aligned_cols=84 Identities=32% Similarity=0.451 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcCCcchHHHHHhcc
Q psy17417 2 AELLQTERTYVKDLDTCIKVFLQESRSHP-NLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENMPEDLGHCFVTWW 80 (87)
Q Consensus 2 ~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~-~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~~~~ig~~Fl~~~ 80 (87)
.||++|||+||.+|+.++++|+..++... .+|..+ +.+..+||||++|+.|++ .++.+|+.|-.++..|+.||++-+
T Consensus 127 ieildtertyvedl~aiie~yld~i~edqeklkl~l-daisalfg~ie~ifafnk-el~n~ldaadld~v~ia~cfve~s 204 (521)
T KOG3518|consen 127 IEILDTERTYVEDLKAIIEDYLDCIREDQEKLKLGL-DAISALFGCIEDIFAFNK-ELLNDLDAADLDCVAIAECFVEKS 204 (521)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhccCcH-HHHHHHhhhHHHHHHHHH-HHHHHHhhcccchHHHHHHHHhcc
Confidence 58999999999999999999999998543 477665 678999999999999999 499999999888999999999999
Q ss_pred cccCcCC
Q psy17417 81 WFVRPKT 87 (87)
Q Consensus 81 ~~f~~~~ 87 (87)
+.|..|+
T Consensus 205 ~efe~yi 211 (521)
T KOG3518|consen 205 EEFEDYI 211 (521)
T ss_pred hhHHHHH
Confidence 9998874
No 4
>KOG4240|consensus
Probab=99.67 E-value=5.6e-17 Score=124.72 Aligned_cols=86 Identities=53% Similarity=0.897 Sum_probs=76.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcCCcchHHHHHhc
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPN-LPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENMPEDLGHCFVTW 79 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~-~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~~~~ig~~Fl~~ 79 (87)
++|+|+||+.||++|..++++|+..+.+... +++.+.+..+.||||+++||+||++.||.+|+.+...|..||+||+.+
T Consensus 637 m~ellqterayv~~L~~~l~~y~~e~d~~~~~i~~~~Lnk~~~ifgnmeeiy~fhn~~~L~eLe~y~~~pE~Vg~~fle~ 716 (1025)
T KOG4240|consen 637 MRELLQTERAYVRDLEECLEGYLAEMDSPMKEILPPLLNKKEIIFGNMEEIYEFHNDIFLSELEKYEQLPEDVGHCFLER 716 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhccccccchHHHHHhhHHHHHHHHhhHHHHHhhhhccCHHHHHHHHHHH
Confidence 4799999999999999999999999988742 333333589999999999999999999999999999999999999999
Q ss_pred ccccCcC
Q psy17417 80 WWFVRPK 86 (87)
Q Consensus 80 ~~~f~~~ 86 (87)
+++|.-|
T Consensus 717 ~d~fqly 723 (1025)
T KOG4240|consen 717 ADDFQLY 723 (1025)
T ss_pred HHHHHHH
Confidence 9999665
No 5
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=99.61 E-value=1.8e-15 Score=95.90 Aligned_cols=82 Identities=34% Similarity=0.602 Sum_probs=68.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhc---CCcchHHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRS-HPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYEN---MPEDLGHCF 76 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~-~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~---~~~~ig~~F 76 (87)
|+||++||+.|+.+|+.+++.|+.|+.. ...++. .+...+|+|+++|+++|+ .|+..|+.... ...+||++|
T Consensus 2 i~ELi~tE~~y~~~L~~l~~~~~~~l~~~~~~l~~---~~~~~lf~~i~~l~~~h~-~ll~~L~~~~~~~~~~~~i~~if 77 (180)
T PF00621_consen 2 INELIETERSYVEDLEILVEVFLKPLRKRSPLLSE---DEIKSLFGNIEELIEIHQ-QLLESLEERMKEWSNIQSIGDIF 77 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTSSHH---HHHHHHHTTHHHHHHHHH-HHHHHHHHHHHTTSSGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCH---HHHHHHhcchhhhhhHHH-HHHHHHHHHHHhhhccchhhhhh
Confidence 5799999999999999999999999998 444554 467899999999999998 59999999643 346899999
Q ss_pred HhcccccCcC
Q psy17417 77 VTWWWFVRPK 86 (87)
Q Consensus 77 l~~~~~f~~~ 86 (87)
++..+.+.+|
T Consensus 78 ~~~~~~~~~Y 87 (180)
T PF00621_consen 78 LKFEPFLKVY 87 (180)
T ss_dssp HHHTTGGHHH
T ss_pred hhccccccce
Confidence 9966555444
No 6
>KOG0689|consensus
Probab=99.47 E-value=4.2e-15 Score=107.40 Aligned_cols=83 Identities=41% Similarity=0.675 Sum_probs=78.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcCCcchHHHHHhcc
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENMPEDLGHCFVTWW 80 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~~~~ig~~Fl~~~ 80 (87)
+.|++.||++||++|+.++++|+.++... ++|..+++..+.||||+.+||.||...|+++++.|...|...|+.|++|.
T Consensus 67 ~~e~iaTE~~yv~~l~~~~~~y~~~~~~~-~lp~~lrg~~~iifgni~~i~~~h~~~fl~e~e~~~r~~~~~~~~f~kh~ 145 (448)
T KOG0689|consen 67 LDELIATEVDYVKDLKSVVENYIELLDAE-DLPEDLRGKDKIIFGNIKEIYEFHKKEFLPELERCERDPLELGQAFAKHE 145 (448)
T ss_pred HHHHHHHHHhhhhcccccccccccccccc-CCChhccCCceeeechHHHHHHhhcccCcchHHHhhhCHHHHHHHHHHHH
Confidence 47999999999999999999999999886 89999999999999999999999998789999999999999999999999
Q ss_pred cccC
Q psy17417 81 WFVR 84 (87)
Q Consensus 81 ~~f~ 84 (87)
.+|.
T Consensus 146 ~k~~ 149 (448)
T KOG0689|consen 146 RKNS 149 (448)
T ss_pred HHhh
Confidence 9886
No 7
>KOG2996|consensus
Probab=99.47 E-value=1.3e-13 Score=102.06 Aligned_cols=80 Identities=29% Similarity=0.466 Sum_probs=72.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC--CcchHHHHHh
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM--PEDLGHCFVT 78 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~--~~~ig~~Fl~ 78 (87)
++||.+||+.|++.|..|...|+.||+.- +|+ ++.+.||+||++|..+|+ .||++++..... .++++++|++
T Consensus 202 lrEi~~TE~kY~~tL~sI~k~f~~PLk~~--l~~---ad~~ivFiNieel~klHt-~ll~ei~~sv~v~~~qtl~qVFik 275 (865)
T KOG2996|consen 202 LREIQQTEEKYTQTLESIEKTFMEPLKRF--LPP---ADYNIVFINIEELNKLHT-ALLAEIEYSVKVAGGQTLYQVFIK 275 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCh---hhhheeEecHHHHHHHHH-HHHHHhHHHhhCCCcccHHHHHHH
Confidence 47999999999999999999999999864 676 588999999999999999 799999988753 3789999999
Q ss_pred cccccCcC
Q psy17417 79 WWWFVRPK 86 (87)
Q Consensus 79 ~~~~f~~~ 86 (87)
+.++|-.|
T Consensus 276 yker~liY 283 (865)
T KOG2996|consen 276 YKERLLIY 283 (865)
T ss_pred HHHHHhhh
Confidence 99999877
No 8
>KOG4424|consensus
Probab=99.44 E-value=1.3e-13 Score=101.40 Aligned_cols=79 Identities=35% Similarity=0.499 Sum_probs=70.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcCCcchHHHHHhcc
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENMPEDLGHCFVTWW 80 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~~~~ig~~Fl~~~ 80 (87)
++||++||+.||..|..+.+.|..++.....+|. +.+..||+||..|+.||.+.|++.|+.+. ||++|.+++
T Consensus 71 aqEll~tE~~Yv~~L~lLd~~F~~~L~~~~~~~~---~~v~~lf~nIssi~~fh~qfllp~l~~r~-----Iadv~qKlA 142 (623)
T KOG4424|consen 71 AQELLDTERTYVKRLHLLDQVFCRRLLEEASIPA---DVITGLFGNISSIHNFHGQFLLPELEKRI-----IADVFQKLA 142 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHHHHhhhHHHhhH-----HHHHHHHhh
Confidence 4799999999999999999999999988766776 56899999999999999877888887775 999999999
Q ss_pred cccCcCC
Q psy17417 81 WFVRPKT 87 (87)
Q Consensus 81 ~~f~~~~ 87 (87)
|.||-|+
T Consensus 143 PFLKmYs 149 (623)
T KOG4424|consen 143 PFLKMYS 149 (623)
T ss_pred hHHHHHH
Confidence 9998774
No 9
>KOG2070|consensus
Probab=99.40 E-value=7.7e-13 Score=96.34 Aligned_cols=81 Identities=27% Similarity=0.584 Sum_probs=72.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcCCc---chHHHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENMPE---DLGHCFV 77 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~~~---~ig~~Fl 77 (87)
++.+++||+.|++.|+.+++.|+.|+.....++. .++..|.||+++|+.||++ ++..||+|...|. +||.||+
T Consensus 106 Lk~~lesEkey~~eLq~lL~t~L~Plq~s~iLs~---~ey~~LmgNfeeI~t~~qd-L~~qlEec~~~~~~q~RVGg~fl 181 (661)
T KOG2070|consen 106 LKNILESEKEYSKELQTLLSTYLRPLQTSEILSS---AEYSYLMGNFEEICTFQQD-LVQQLEECTKLPEAQQRVGGCFL 181 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccch---HHHHHHhcchHHhHhHHHH-HHHHHHHhhcCchhhhhhhhHHH
Confidence 3679999999999999999999999998766765 5789999999999999994 9999999987654 9999999
Q ss_pred hcccccCc
Q psy17417 78 TWWWFVRP 85 (87)
Q Consensus 78 ~~~~~f~~ 85 (87)
..++.||.
T Consensus 182 n~ap~mkt 189 (661)
T KOG2070|consen 182 NLAPQMKT 189 (661)
T ss_pred hhhHHHHH
Confidence 99998863
No 10
>KOG4305|consensus
Probab=99.37 E-value=4.8e-13 Score=103.65 Aligned_cols=85 Identities=26% Similarity=0.416 Sum_probs=75.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchh-hhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC---CcchHHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLV-GKHDIIFGNIEEIRDFHRDIFLKELEKYENM---PEDLGHCF 76 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~-~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~---~~~ig~~F 76 (87)
|.|++.||++||++|+.+.+.|++|+.+...+|+..+ +-+..+|+|+++|+.+|+ .||.+|..+... ...||++|
T Consensus 340 I~Eli~tE~d~v~dLel~re~y~kpl~~S~iipE~~~~~Fi~~vF~n~~~ii~ln~-~LL~aL~~r~k~~G~V~~IGdIl 418 (1029)
T KOG4305|consen 340 IFELIYTEEDFVADLELAREIYRKPLLESSIIPEQERAEFIAHVFGNIEEIIQLNE-KLLKALRVRQKLSGVVEGIGDIL 418 (1029)
T ss_pred eEEEEeehhHHHHHHHHHHHHHhChHhhhccCccchhHHHHHHHHhhHHHHHHHHH-HHHHHHHHhhccCCccchHHHHH
Confidence 4689999999999999999999999999877898654 348999999999999997 699999887642 25899999
Q ss_pred HhcccccCcC
Q psy17417 77 VTWWWFVRPK 86 (87)
Q Consensus 77 l~~~~~f~~~ 86 (87)
+++.+.|+||
T Consensus 419 l~~lp~~~~y 428 (1029)
T KOG4305|consen 419 LAWLPKAEPY 428 (1029)
T ss_pred HHHhhhhhHH
Confidence 9999999997
No 11
>KOG3519|consensus
Probab=99.33 E-value=4.5e-12 Score=96.90 Aligned_cols=82 Identities=34% Similarity=0.542 Sum_probs=70.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC------CcchH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHP-NLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM------PEDLG 73 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~-~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~------~~~ig 73 (87)
|+|+++||+.||++|..+++.|+.++.+.. .+.. +.++.+|||+++++.||. .|+..|+++.+. ...||
T Consensus 341 i~E~l~tE~~Yv~~L~~~~~~yl~~~~k~~~~~~~---~~~~~~f~ni~~i~~f~~-~fl~~L~~~~~~~~~~~~~~~ig 416 (756)
T KOG3519|consen 341 IKELLDTEKNYVKDLNALCEGYLPPQNKRARGLSV---NQLDLLFGNIEDILRFQK-EFLKTLEQQINPELIPPSLSEIG 416 (756)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhhhccccH---HHHHHHccCHHHHHHHHH-HHHHHHHHhcchhhcchhHhHHH
Confidence 579999999999999999999999964432 2432 678999999999999999 699999998741 24899
Q ss_pred HHHHhcccccCcC
Q psy17417 74 HCFVTWWWFVRPK 86 (87)
Q Consensus 74 ~~Fl~~~~~f~~~ 86 (87)
.||+.+.+.|..|
T Consensus 417 ~~fL~~~~~f~~y 429 (756)
T KOG3519|consen 417 PVFLEQLDVFKIY 429 (756)
T ss_pred HHHHHhcccceee
Confidence 9999999999887
No 12
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=99.21 E-value=1.4e-11 Score=94.35 Aligned_cols=84 Identities=24% Similarity=0.349 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchh-hhHHhHhcCHHHHHHHhHHHHHHHHHhhhc-CC--cchHHHHH
Q psy17417 2 AELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLV-GKHDIIFGNIEEIRDFHRDIFLKELEKYEN-MP--EDLGHCFV 77 (87)
Q Consensus 2 ~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~-~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~-~~--~~ig~~Fl 77 (87)
-|.+-|||+||++|..+.+.|++|+.....+|+..+ +-++.+|.|+-+|+.+++ +|+.+|..+.. .| ..|||+|+
T Consensus 490 ~evi~ter~FVk~le~lRD~~~K~L~~sn~Ip~n~r~~Fik~vf~~i~~i~avn~-k~~~AL~~rQ~lsPiv~~I~DifL 568 (1175)
T COG5422 490 YEVIYTERDFVKDLEYLRDTWIKPLEESNIIPENARRNFIKHVFANINEIYAVNS-KLLKALTNRQCLSPIVNGIADIFL 568 (1175)
T ss_pred hheeeeccchhhhhHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHHHhhH-HHHHHHhhcccccccccchHHHHH
Confidence 477889999999999999999999999877999876 569999999999999999 69999987754 23 58999999
Q ss_pred hcccccCcC
Q psy17417 78 TWWWFVRPK 86 (87)
Q Consensus 78 ~~~~~f~~~ 86 (87)
+|.|.|.|+
T Consensus 569 ~~vP~Fepf 577 (1175)
T COG5422 569 DYVPKFEPF 577 (1175)
T ss_pred hhhhhhhHH
Confidence 999999986
No 13
>KOG3523|consensus
Probab=98.90 E-value=3.2e-09 Score=79.04 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcCC---cchHHHHHh
Q psy17417 2 AELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENMP---EDLGHCFVT 78 (87)
Q Consensus 2 ~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~~---~~ig~~Fl~ 78 (87)
.|+|.+|.+|++.|+.+++.|+..-.-...+.. .+.+.||+||.++.+++. .||.+||.+.... ..|.||..+
T Consensus 263 FEviTSEaSYl~SLnllv~hF~~s~~l~~~Ls~---~d~~~LFSni~~V~~~Se-rfl~dLE~r~e~ni~i~dicDiv~~ 338 (695)
T KOG3523|consen 263 FEVITSEASYLRSLNLLVDHFMNSKELRSTLSA---SDRHHLFSNIQDVREVSE-RFLCDLEARLEENIFIDDICDIVED 338 (695)
T ss_pred heeehhhHHHHHHHHHHHHHHhhhHHHHHhcCh---HHHHHHHhhhHHHHHHHH-HHHHHHHHHHHhCchhhHHHHHHHH
Confidence 589999999999999999999987443333443 477999999999999999 5999999998643 589999999
Q ss_pred ccccc-CcC
Q psy17417 79 WWWFV-RPK 86 (87)
Q Consensus 79 ~~~~f-~~~ 86 (87)
|++++ .+|
T Consensus 339 ha~~~f~vY 347 (695)
T KOG3523|consen 339 HAAKHFSVY 347 (695)
T ss_pred hccccccee
Confidence 98764 444
No 14
>KOG3522|consensus
Probab=98.83 E-value=1e-08 Score=78.49 Aligned_cols=63 Identities=29% Similarity=0.448 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhc
Q psy17417 2 AELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYEN 67 (87)
Q Consensus 2 ~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~ 67 (87)
.+|+++|.+||..|+.+++.|++|+.+...+-. ...++.||-||++|+++|. .|+..|+.+..
T Consensus 6 ~~l~~~Eq~yv~sL~t~vd~y~qpL~~~~~l~~--~~~~~eif~~i~ell~~he-~fl~~l~s~~~ 68 (925)
T KOG3522|consen 6 LQLIDREQSYVESLHTGVDRYVQPLKERKVLID--PRDVDEIFQNIPELLEIHE-DFLEQLCSRDQ 68 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccC--CchHHHHHHhhHHHHHHHH-HHHHHHHhhhh
Confidence 579999999999999999999999998543322 1478999999999999999 59999998875
No 15
>KOG3520|consensus
Probab=98.83 E-value=1.6e-08 Score=79.56 Aligned_cols=76 Identities=25% Similarity=0.408 Sum_probs=65.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC----CcchHHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM----PEDLGHCF 76 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~----~~~ig~~F 76 (87)
|.||++||+..|+.|+.+-..|.+||.....+|. +.+..||.|+++|.++|. .|+..|.++... ..+||++.
T Consensus 395 I~EL~~TE~~HVRTLKIl~~vF~q~m~~e~~~~~---~~l~~LFP~LdeL~eiH~-~f~~~lk~rr~e~~~vI~~IGDlL 470 (1167)
T KOG3520|consen 395 IYELFQTERHHVRTLKILDRVFYQPMMEELLFPQ---EELNKLFPCLDELIEIHS-SFLQRLKERRKESLVVIKRIGDLL 470 (1167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH---HHHHHhcccHHHHHHHHH-HHHHHHHHHHHhccchHHHHHHHH
Confidence 5799999999999999999999999999767886 567899999999999999 699999876542 24788888
Q ss_pred Hhcc
Q psy17417 77 VTWW 80 (87)
Q Consensus 77 l~~~ 80 (87)
+.+-
T Consensus 471 l~~F 474 (1167)
T KOG3520|consen 471 LDQF 474 (1167)
T ss_pred HHHc
Confidence 7654
No 16
>KOG3521|consensus
Probab=98.70 E-value=3.3e-08 Score=74.48 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=64.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhc------CC---
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHP--NLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYEN------MP--- 69 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~--~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~------~~--- 69 (87)
|+||+.||-.||+.|+.+.+.|+..|.+-. .+-.++ +-..+|+|+..|.+.|+...+.-|+..+. .|
T Consensus 182 iWELvtTE~~YIrkL~~~tdlllacL~nlQe~GlL~dV--eaerlFsNv~~l~~~n~slW~~~l~P~laksr~TgepLd~ 259 (846)
T KOG3521|consen 182 IWELVTTEFRYIRKLLRYTDLLLACLLNLQECGLLKDV--EAERLFSNVPTLFNVNRSLWLQVLEPILAKSRETGEPLDP 259 (846)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhh--HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCh
Confidence 689999999999999999999888877543 233333 45799999999999998533444443331 23
Q ss_pred cchHHHHHhcccccCcCC
Q psy17417 70 EDLGHCFVTWWWFVRPKT 87 (87)
Q Consensus 70 ~~ig~~Fl~~~~~f~~~~ 87 (87)
.-+-.-|+.+...|+||+
T Consensus 260 ~~lq~GFl~f~s~f~pY~ 277 (846)
T KOG3521|consen 260 NYLQNGFLDFGSWFRPYT 277 (846)
T ss_pred HHHHHHHHHHHHhhhHHH
Confidence 345577999999999995
No 17
>KOG3531|consensus
Probab=97.94 E-value=8.1e-07 Score=68.53 Aligned_cols=83 Identities=28% Similarity=0.439 Sum_probs=67.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC-----------C
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM-----------P 69 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~-----------~ 69 (87)
++|+.+|||.|.++|..+...|...+......|.. ....+|.|++.++++|+ .||+++|+++.. .
T Consensus 538 ~kel~~tERty~kdleV~tt~Frst~v~~dam~~~---~~s~l~~~~~pl~k~h~-~fLk~ieeria~weGrsnani~~~ 613 (1036)
T KOG3531|consen 538 VKELSDTERTYLKDLEVITTWFRSTVVKEDAMPNA---LKSLLFHNSTPLTKFHE-GFLKEIEERIALWEGRSNANIVIE 613 (1036)
T ss_pred ecccccccccchhccceeeeeecceeecCcccccc---hhhhhccCCChhhHHHH-HHHHHHHHHHHhccCCCCCceeee
Confidence 47899999999999999887787777766556654 34789999999999999 599999998631 1
Q ss_pred cchHHHHHhcccccCcCC
Q psy17417 70 EDLGHCFVTWWWFVRPKT 87 (87)
Q Consensus 70 ~~ig~~Fl~~~~~f~~~~ 87 (87)
.+|||+-++++...+.||
T Consensus 614 ~~igDVmLk~m~~l~i~~ 631 (1036)
T KOG3531|consen 614 QRIGDVMLKNMRSLKITT 631 (1036)
T ss_pred eccCCcchhhhhccchhh
Confidence 469999999998887764
No 18
>KOG3524|consensus
Probab=95.71 E-value=0.011 Score=45.70 Aligned_cols=64 Identities=25% Similarity=0.170 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhh
Q psy17417 2 AELLQTERTYVKDLDTCIKVFLQESRSHPN--LPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYE 66 (87)
Q Consensus 2 ~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~--~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~ 66 (87)
.++-.||..|+.-|..++..|..++..-.. -|..-++++.++|+|+.+|..+|. .....++...
T Consensus 390 ~~~y~tesnyv~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh~-k~~D~l~~l~ 455 (850)
T KOG3524|consen 390 EALYCTESNYVFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVHK-KNDDKLLDLA 455 (850)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhhc-cchHHHHHHH
Confidence 467789999999999999988777764332 233225789999999999999998 5888776654
No 19
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=88.79 E-value=2.8 Score=23.40 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHH
Q psy17417 2 AELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKE 61 (87)
Q Consensus 2 ~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~ 61 (87)
+|-..-|+.|.+.|..+...+.+....... ...+..-+..+-...+.+-..|. .+-..
T Consensus 33 keRa~lE~~Yak~L~kl~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~a~~h~-~~a~~ 90 (91)
T PF00611_consen 33 KERASLEEEYAKSLQKLAKKFKKKMKSSQE-YGTLKNAWDSLLEETEQIAEQHS-KLAEN 90 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCC-ccHHHHHHHHHHHHHHHHHHHHH-HHHhh
Confidence 456778999999999999999887764321 23334456666666777777776 35443
No 20
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=81.76 E-value=9.6 Score=25.74 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHh
Q psy17417 5 LQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEK 64 (87)
Q Consensus 5 i~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~ 64 (87)
-.-|..|.+.|..+...|......+...+..+..-+..+....+.+...|. .|...|..
T Consensus 32 a~iEeeYak~L~KLak~~~~~~~~~~~~~gs~~~a~~~il~~~e~lA~~h~-~~a~~L~~ 90 (234)
T cd07652 32 AAIEEEHARGLKKLARTTLDTYKRPDHKQGSFSNAYHSSLEFHEKLADNGL-RFAKALNE 90 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345899999999999888876654333344444567788888888888888 48877754
No 21
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=76.42 E-value=19 Score=24.61 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhh
Q psy17417 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKY 65 (87)
Q Consensus 3 ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~ 65 (87)
|=..-|+.|.+.|..+...|.+.....+ -+..+..-+..+.+..+.+-..|. .+-..|..-
T Consensus 30 ERa~IE~~Yak~L~kLakk~~~~~~~~~-e~gsl~~aw~~~~~e~e~~a~~H~-~l~~~L~~~ 90 (258)
T cd07655 30 ERAEIEKAYAKKLKEWAKKWRDLIEKGP-EYGTLETAWKGLLSEAERLSELHL-SIRDKLLND 90 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCC-CCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3456699999999999988877664432 244555678899999999999998 477777554
No 22
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=75.05 E-value=23 Score=23.97 Aligned_cols=56 Identities=21% Similarity=0.218 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHh
Q psy17417 5 LQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEK 64 (87)
Q Consensus 5 i~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~ 64 (87)
-.-|..|.+.|..+...+.++.... |..+..-++.+.+..+.+-..|. .+-..|..
T Consensus 32 a~IE~~YAK~L~kLa~k~~k~~~~~---~Gtl~~aw~~~~~e~e~~a~~H~-~la~~L~~ 87 (239)
T cd07658 32 AELELNYAKGLSKLSGKLSKASKSV---SGTLSSAWTCVAEEMESEADIHR-NLGSALTE 87 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC---CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4569999999999988886666432 35556778999999999999998 47777753
No 23
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=71.32 E-value=16 Score=24.43 Aligned_cols=63 Identities=19% Similarity=0.321 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhh
Q psy17417 2 AELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKY 65 (87)
Q Consensus 2 ~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~ 65 (87)
+|-..-|+.|-+.|..+...|.............+..-+..|.+-.+.+-..|. .+-..|...
T Consensus 29 keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~-~~a~~l~~~ 91 (251)
T cd07653 29 KERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHE-LIAENLNSN 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 345677999999999999888765432221222334567888888888889998 477766543
No 24
>KOG1241|consensus
Probab=71.11 E-value=9.3 Score=30.57 Aligned_cols=73 Identities=22% Similarity=0.324 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHH------hHHHHHHHHHhhhcCCcchHHHHHhccc
Q psy17417 8 ERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDF------HRDIFLKELEKYENMPEDLGHCFVTWWW 81 (87)
Q Consensus 8 E~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~------h~~~fl~~Le~~~~~~~~ig~~Fl~~~~ 81 (87)
+|.-+.+|+.++..+++.+..+ ++++++...+.|-+-+-.|++. |.+.|+.- ..--...|.-|.+|++
T Consensus 564 dr~q~~eLQs~Lc~~Lq~i~rk--~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV----~tl~~~Lg~~F~kym~ 637 (859)
T KOG1241|consen 564 DRAQLNELQSLLCNTLQSIIRK--VGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAV----STLAESLGKGFAKYMP 637 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--ccccchhHHHHHHHHHHHHHcCCccccchHHHHHHH----HHHHHHHhHhHHHHHH
Confidence 5667788888888888777654 3333333333333322222222 22222211 0012467888888888
Q ss_pred ccCcC
Q psy17417 82 FVRPK 86 (87)
Q Consensus 82 ~f~~~ 86 (87)
.|+||
T Consensus 638 ~f~py 642 (859)
T KOG1241|consen 638 AFKPY 642 (859)
T ss_pred HHHHH
Confidence 88887
No 25
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=66.94 E-value=31 Score=23.88 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHH
Q psy17417 5 LQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELE 63 (87)
Q Consensus 5 i~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le 63 (87)
-.-|+.|.+.|..+...|.+.+... .-+..++.-+..+.+-.+.|-..|. .+-..|.
T Consensus 32 A~IE~~Yak~L~~Lakk~~~~~~~~-~~~Gtl~~aw~~i~~etE~ia~~H~-~la~~L~ 88 (258)
T cd07680 32 AKIEKAYGQQLTDWAKRWRQLIEKG-PQYGSLERAWGAIMTEADKVSELHQ-EVKNNLL 88 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccC-CCcchHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4569999999999998877543322 2234455678999999999999998 4666563
No 26
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=50.96 E-value=51 Score=19.54 Aligned_cols=51 Identities=14% Similarity=0.357 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC--CCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHh
Q psy17417 10 TYVKDLDTCIKVFLQESRSHPN--LPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEK 64 (87)
Q Consensus 10 ~Yv~~L~~i~~~~~~~l~~~~~--~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~ 64 (87)
.+++.|+.-++.|...+++... .|..--..+..||-++... |.+ +|.-+++
T Consensus 2 ef~~~l~~~v~if~nRmksns~RGrsIanDsaVqsLF~~lt~m---H~~-LL~~i~~ 54 (96)
T PF12210_consen 2 EFCNTLRSSVEIFVNRMKSNSSRGRSIANDSAVQSLFQTLTAM---HPQ-LLKYIQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--GGG-HHHHHHHHHHHHH---HHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcCCCCcccHHHHHHHHHHHHH---HHH-HHHHHHH
Confidence 5788999999999999986542 3322123567777776654 653 6666544
No 27
>PF15219 TEX12: Testis-expressed 12
Probab=50.02 E-value=48 Score=19.61 Aligned_cols=46 Identities=11% Similarity=0.247 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHh---cCHHHHHHHhH
Q psy17417 10 TYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIF---GNIEEIRDFHR 55 (87)
Q Consensus 10 ~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF---~ni~~I~~~h~ 55 (87)
+--++++..+..|..++.+...+...-..+++.|| .+|+..+.-.+
T Consensus 36 d~skEinlmls~yA~ilSEraavd~syi~eiD~lfkEA~~lEnfLkqkr 84 (100)
T PF15219_consen 36 DMSKEINLMLSTYAKILSERAAVDASYITEIDGLFKEANALENFLKQKR 84 (100)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888899998875432221124677777 44555554444
No 28
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=49.74 E-value=86 Score=21.77 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHh
Q psy17417 5 LQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEK 64 (87)
Q Consensus 5 i~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~ 64 (87)
-.-|++|-+.|..+...+.+.+...+.. ..++..++.+.+..+.|-.+|. .+-..|..
T Consensus 32 A~IE~~YAk~L~~lakk~~~~~e~g~ey-GTL~~sw~~~~~e~E~ia~~H~-~l~~~L~~ 89 (258)
T cd07681 32 AKIEKGYAQQLSDWARKWRGIVEKGPQY-GTLEKAWHAFLTAAERLSEIHL-ELRENLVG 89 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhccccc-ChHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3569999999999888777766543221 2345678999999999999998 47777744
No 29
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=49.50 E-value=65 Score=20.32 Aligned_cols=60 Identities=18% Similarity=0.193 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhh
Q psy17417 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYE 66 (87)
Q Consensus 3 ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~ 66 (87)
|=-.-|+.|.+.|..+...+...... -|..+..-+..+..-.+.+-..|. .+...|..-.
T Consensus 25 eRa~iE~eYak~L~kLak~~~~~~~~---~~~t~~~~w~~~~~e~~~~a~~h~-~~a~~l~~~i 84 (191)
T cd07610 25 KRAAIEEEYAKNLQKLAKKFSKKPES---GKTSLGTSWNSLREETESAATVHE-ELSEKLSQLI 84 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCC---CCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 44567999999999998877653322 112334567888888888988888 4777665544
No 30
>PF03271 EB1: EB1-like C-terminal motif; InterPro: IPR004953 A group of microtubule-associated proteins called +TIPs (plus end tracking proteins), including EB1 (end-binding protein 1) family proteins, label growing microtubules ends specifically in diverse organisms and are implicated in spindle dynamics, chromosome segregation, and directing microtubules toward cortical sites. EB1 members have a bipartite composition: the N-terminal CH domain (IPR001715 from INTERPRO) mediates microtubule plus end localization and a C-terminal cargo binding domain (EB1-C) that captures cell polarity determinants. The EB1-C domain comprises a unique EB1-like sequence motif that acts as a binding site for other +TIP proteins. It interacts with the carboxy terminus of the adenomatous polyposis coli (APC) tumor suppressor, a well conserved +TIP phosphoprotein with a pivotal function in cell cycle regulation. Another binding partner of the EB1-C domain is the well conserved +TIP protein dynactin, a component of the large cytoplasmic dynein/dynactin complex [, , ]. The ~80-residue EB1-C domain starts with a long smoothly curved helix (alpha1), which is followed by a hairpin connection leading to a short second helix (alpha2) running antiparallel to alpha1. The two parallel alpha1 helices of the EB1-C domain dimer wrap around each other in a slightly left-handed supercoil. The two alpha2 helices run antiparallel to helices alpha1 and form a similar fork in the opposite orientation and rotated by 90 degrees. As a result, two helical segments from each monomer form a four-helix bundle. The side chain forming the hydrophobic core of this bundle are highly conserved [, , ]. Some protein known to contain an EB1-C domain are listed below: Yeast protein BIM1. Fission yeast microtubule integrity protein mal3. Vertebrate microtubule-associated protein RP/EB family member 1 (EB1). Vertebrate microtubule-associated protein RP/EB family member 2 (EB2 or RP1). Vertebrate microtubule-associated protein RP/EB family member 3 (EBF3). ; GO: 0008017 microtubule binding; PDB: 3TQ7_B 4E61_B 2HKQ_A 1YIG_B 3GJO_B 2HL5_B 1YIB_A 1WU9_A 1TXQ_B.
Probab=45.48 E-value=40 Score=16.78 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=14.4
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHh
Q psy17417 5 LQTERT-YVKDLDTCIKVFLQES 26 (87)
Q Consensus 5 i~TE~~-Yv~~L~~i~~~~~~~l 26 (87)
++.||+ |-+.|+.| +.+.+..
T Consensus 2 le~ERdFYf~KLR~I-E~l~q~~ 23 (43)
T PF03271_consen 2 LEKERDFYFNKLRDI-EILCQEA 23 (43)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHH
T ss_pred chHHHHHHHHHHHHH-HHHHhhc
Confidence 467888 77778764 6666664
No 31
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=44.57 E-value=77 Score=23.45 Aligned_cols=48 Identities=25% Similarity=0.458 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcch-h-hhHHhHhcCHHHH
Q psy17417 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGL-V-GKHDIIFGNIEEI 50 (87)
Q Consensus 3 ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~-~-~~~~~lF~ni~~I 50 (87)
.+++|+|+-...|..+.+.........+.+|.+- + +....+|-|..-+
T Consensus 2 nlLET~R~~~EEmE~ienAIaeR~~~NPK~Pr~~lrle~qi~~f~n~~R~ 51 (470)
T COG5188 2 NLLETRRSLLEEMEIIENAIAERIQRNPKLPRDELRLERQIRIFENMERI 51 (470)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhHHHHHHHHHHH
Confidence 4799999999999998888888887777788642 2 3445667776554
No 32
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=41.05 E-value=17 Score=20.52 Aligned_cols=15 Identities=20% Similarity=0.261 Sum_probs=11.9
Q ss_pred cchHHHHHhcccccC
Q psy17417 70 EDLGHCFVTWWWFVR 84 (87)
Q Consensus 70 ~~ig~~Fl~~~~~f~ 84 (87)
+..|++|++|...++
T Consensus 60 QTag~vflKhGseLr 74 (76)
T PF03671_consen 60 QTAGNVFLKHGSELR 74 (76)
T ss_dssp SBHHHHHHHT-SEEE
T ss_pred hhhhhhHhhcCcEee
Confidence 579999999988765
No 33
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.40 E-value=1.2e+02 Score=20.57 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHh
Q psy17417 2 AELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEK 64 (87)
Q Consensus 2 ~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~ 64 (87)
+|=..-|+.|.+.|..+...+.... . ...+..-+..|-.-.+.+...|. .|-..|.+
T Consensus 29 keRa~IEe~Yak~L~kLakk~~~~~----~-~gt~~~~w~~i~~~~e~~a~~H~-~l~~~L~~ 85 (261)
T cd07648 29 RERATIEETYSKALNKLAKQASNSS----Q-LGTFAPLWLVLRVSTEKLSELHL-QLVQKLQE 85 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC----C-cCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3445678999999998877553311 1 22334567888888899999998 48777754
No 34
>PHA02891 hypothetical protein; Provisional
Probab=35.87 E-value=69 Score=19.23 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=24.0
Q ss_pred HHHHhhCCCCCCcchhhhHHhHhcCHHH--HHHHhHHHHHHHHH
Q psy17417 22 FLQESRSHPNLPPGLVGKHDIIFGNIEE--IRDFHRDIFLKELE 63 (87)
Q Consensus 22 ~~~~l~~~~~~p~~~~~~~~~lF~ni~~--I~~~h~~~fl~~Le 63 (87)
|...+...-..|++ +..+.||||--+ +--|.. .||++|.
T Consensus 79 FfNi~Sk~ii~PPD--D~~~rIFG~e~~idvniF~e-~FL~ELn 119 (120)
T PHA02891 79 FFNIISKLIIIPPD--DALKRIFGDESEIDINIFAE-KFLAELN 119 (120)
T ss_pred HHHHHHHHhcCCcH--HHHHHHhCCcceechHHHHH-HHHHHhc
Confidence 44444443346663 467899999665 445565 6887763
No 35
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.79 E-value=98 Score=20.73 Aligned_cols=60 Identities=20% Similarity=0.086 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhh
Q psy17417 2 AELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKY 65 (87)
Q Consensus 2 ~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~ 65 (87)
+|--.-|+.|.+.|..+...+.. +... .. ..+..-+..+.+..+.+-+.|. .+-..|..-
T Consensus 29 kERa~IE~~Yak~L~kLakk~~~-~~~~-e~-g~~~~~w~~i~~e~e~~a~~H~-~la~~l~~~ 88 (228)
T cd07650 29 QERRRLERQYVQGLRKLARRNEP-LNKS-LL-GVFQNPWLTIESETEFIAASHG-ELAQRIETD 88 (228)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc-ccch-hh-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34456688999999887665431 1111 11 1223567888888999999998 476666544
No 36
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=35.01 E-value=28 Score=20.73 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=19.9
Q ss_pred CCcchhhhHHhHhcCHHHHHHHhH
Q psy17417 32 LPPGLVGKHDIIFGNIEEIRDFHR 55 (87)
Q Consensus 32 ~p~~~~~~~~~lF~ni~~I~~~h~ 55 (87)
+|.+++++....|.|++.+++-.-
T Consensus 28 ~~~d~~~Q~~~~~~Nl~~~L~~aG 51 (114)
T cd06152 28 IPEDLEEEIDQAFDNVELALKAAG 51 (114)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHhC
Confidence 577788899999999999987553
No 37
>PF09660 DUF2397: Protein of unknown function (DUF2397); InterPro: IPR013493 Proteins in this family are encoded within a conserved gene four-gene neighbourhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1)) and Ralstonia solanacearum (Betaproteobacteria).
Probab=34.33 E-value=94 Score=23.46 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=34.9
Q ss_pred hhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcCCcchHHHHHhcccccCcC
Q psy17417 36 LVGKHDIIFGNIEEIRDFHRDIFLKELEKYENMPEDLGHCFVTWWWFVRPK 86 (87)
Q Consensus 36 ~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~~~~ig~~Fl~~~~~f~~~ 86 (87)
+...+..||+.+..+.+=.++ |+..|.........-.+.|+.|.+.|-.|
T Consensus 145 ~~~~w~~L~~~f~~L~~na~d-f~~~L~~~~~~~~~~~e~Fl~yKd~Li~Y 194 (486)
T PF09660_consen 145 VYEWWRDLFEDFERLAQNAQD-FYASLQSVKAEEDMDTEAFLAYKDALIDY 194 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhccChhHHHHHHHHHHHH
Confidence 335678888888888887774 88888877654444556677777665443
No 38
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=34.08 E-value=1.5e+02 Score=20.20 Aligned_cols=57 Identities=19% Similarity=0.117 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHh
Q psy17417 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEK 64 (87)
Q Consensus 3 ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~ 64 (87)
|=..-|+.|.+.|..+...+.. . +.-...++.-++.+.+-.+.+-..|. .|-..|..
T Consensus 30 ERA~IE~~YaK~L~kLskk~~~---g-~~E~GTl~~sw~~~~~E~e~~a~~H~-~la~~L~~ 86 (240)
T cd07672 30 ERASIEEKYGKELLNLSKKKPC---G-QTEINTLKRSLDVFKQQIDNVGQSHI-QLAQTLRD 86 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC---C-CcccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4455688888888877665421 1 11122445678899999999999998 47777754
No 39
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=31.63 E-value=39 Score=19.75 Aligned_cols=23 Identities=9% Similarity=0.258 Sum_probs=18.3
Q ss_pred CCcchhhhHHhHhcCHHHHHHHh
Q psy17417 32 LPPGLVGKHDIIFGNIEEIRDFH 54 (87)
Q Consensus 32 ~p~~~~~~~~~lF~ni~~I~~~h 54 (87)
+|.++.++....|.|++.+++-.
T Consensus 27 ~~~d~~~Q~~~~~~ni~~~L~~a 49 (111)
T cd02198 27 VAEDFEAQFRLAFQNLGAVLEAA 49 (111)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHc
Confidence 56677788899999999888754
No 40
>PF11267 DUF3067: Protein of unknown function (DUF3067); InterPro: IPR021420 This family of proteins has no known function. ; PDB: 2LJW_A.
Probab=31.27 E-value=57 Score=19.45 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q psy17417 7 TERTYVKDLDTCIK 20 (87)
Q Consensus 7 TE~~Yv~~L~~i~~ 20 (87)
||.+|..+|..+.+
T Consensus 44 tE~eY~~hL~~va~ 57 (99)
T PF11267_consen 44 TEEEYLEHLDAVAE 57 (99)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 89999999998765
No 41
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=31.01 E-value=97 Score=16.92 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy17417 3 ELLQTERTYVKDLDTCIKV 21 (87)
Q Consensus 3 ELi~TE~~Yv~~L~~i~~~ 21 (87)
+=.+-|+.|.+.|..+...
T Consensus 34 ~Ra~iE~eYak~L~kL~~~ 52 (87)
T smart00055 34 ERAKIEEEYAKKLQKLSKK 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3356788999999888765
No 42
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.85 E-value=1.8e+02 Score=20.03 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhh
Q psy17417 4 LLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKY 65 (87)
Q Consensus 4 Li~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~ 65 (87)
=-.-|+.|.+.|..+...+.. . .-...++..++.+.+-.+.+-+.|. .|-..|.+.
T Consensus 38 Ra~iEe~Yak~L~kLak~~~~----~-~~~Gt~~~~~~~~~~e~e~~a~~H~-~la~~L~~~ 93 (269)
T cd07673 38 RATIEEAYSRSMTKLAKSASN----Y-SQLGTFAPVWDVFKTSTEKLANCHL-ELVRKLQEL 93 (269)
T ss_pred HHHHHHHHHHHHHHHHhhhcc----C-CCcChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 345688999999877664421 1 1222345568888899999999998 488877653
No 43
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.23 E-value=1.8e+02 Score=19.72 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhh
Q psy17417 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKY 65 (87)
Q Consensus 3 ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~ 65 (87)
|=..-|+.|.+.|..+.. .+... .-...+..-++.+.+..+.+-..|. .|-..|..-
T Consensus 30 ERa~IEe~Yak~L~klak---~~~~~--~e~Gtl~~sw~~~~~e~E~~a~~H~-~la~~L~~e 86 (233)
T cd07649 30 ERIKIEEEYAKNLSKLSQ---SSLAA--QEEGTLGEAWAQVKKSLADEAEVHL-KFSSKLQSE 86 (233)
T ss_pred HHHHHHHHHHHHHHHHHh---hhcCC--CCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 334568999999998854 22211 1223345678999999999999998 487777643
No 44
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=29.76 E-value=1.1e+02 Score=18.61 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy17417 2 AELLQTERTYVKDLDTCI 19 (87)
Q Consensus 2 ~ELi~TE~~Yv~~L~~i~ 19 (87)
..|++.|+.+++.|+.-+
T Consensus 7 ~~Ll~~E~~l~~~L~~Yi 24 (134)
T PF08336_consen 7 EKLLELEEELISNLRNYI 24 (134)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467788887777766543
No 45
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=29.52 E-value=40 Score=19.51 Aligned_cols=23 Identities=9% Similarity=0.247 Sum_probs=18.3
Q ss_pred CcchhhhHHhHhcCHHHHHHHhH
Q psy17417 33 PPGLVGKHDIIFGNIEEIRDFHR 55 (87)
Q Consensus 33 p~~~~~~~~~lF~ni~~I~~~h~ 55 (87)
|.++.++....|.||+.+++-..
T Consensus 24 ~~~~~~Q~~~~~~nl~~~L~~~G 46 (105)
T cd06150 24 SADITGQTRQVLAKIDALLAEAG 46 (105)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcC
Confidence 35667889999999999888654
No 46
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=29.26 E-value=40 Score=19.39 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=18.2
Q ss_pred CcchhhhHHhHhcCHHHHHHHhH
Q psy17417 33 PPGLVGKHDIIFGNIEEIRDFHR 55 (87)
Q Consensus 33 p~~~~~~~~~lF~ni~~I~~~h~ 55 (87)
+.++.++...+|.||+.+++-..
T Consensus 21 ~~d~~~Q~~~v~~ni~~~L~~aG 43 (101)
T cd06155 21 DETVEEQMESIFSKLREILQSNG 43 (101)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcC
Confidence 34566789999999999988654
No 47
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.58 E-value=1.9e+02 Score=19.32 Aligned_cols=58 Identities=17% Similarity=0.078 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhh
Q psy17417 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYE 66 (87)
Q Consensus 3 ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~ 66 (87)
|=..-|+.|.+.|..+...+. +..-+..+..-+..+....+.+-+.|. .|-..|..-.
T Consensus 30 eRa~iE~eYak~L~kLak~~~-----~~~e~gsl~~aw~~i~~e~e~~a~~H~-~la~~L~~~v 87 (239)
T cd07647 30 QRAKAEEDYGKALLKLSKSAG-----PGDEIGTLKSSWDSLRKETENVANAHI-QLAQSLREEA 87 (239)
T ss_pred HHHHHHHHHHHHHHHHHhccC-----CCCccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 345668999999988865532 111223445568888899999999998 5888776643
No 48
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.36 E-value=2.1e+02 Score=19.53 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHh
Q psy17417 5 LQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEK 64 (87)
Q Consensus 5 i~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~ 64 (87)
-.-|+.|.+.|.-+.. .+. . ..-...++.-++.+.+-.+.+-++|. .|-..|.+
T Consensus 32 a~IEe~Yak~L~klak---~~~-~-~~e~Gtl~~~w~~~~~~~E~~a~~H~-~l~~~L~~ 85 (261)
T cd07674 32 AAIEETYSKSMSKLSK---MAS-N-GSPLGTFAPMWEVFRVSSDKLALCHL-ELMRKLND 85 (261)
T ss_pred HHHHHHHHHHHHHHHh---ccc-C-CCccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4558889999977652 111 1 11223445678999999999999999 48887764
No 49
>PF04333 VacJ: VacJ like lipoprotein; InterPro: IPR007428 Lipoproteins in Gram-negative microbes also act as structural stabilisers, forming non-covalent bonds with peptidoglycan on the outer membrane of the cell []. Following completion of the genomes of several Gram-negative prokaryotes, a putative lipoprotein, VacJ, has been discovered in the raw sequence open reading frames. Biochemical analysis of the Shigella flexneri VacJ protein revealed it to be essential for virulence, promoting spread of bacterial cells through the intercellular space of tissues []. Upon expression in the facultative intracellular microbe, host cells form membranous protrusions containing the pathogen, allowing it to move to the cytoplasm of the next target cell. As homologues of this lipoprotein have largely been found in obligate or facultative intracellular microbial genomes, it appears to be specific for that particular lifestyle []. ; GO: 0016020 membrane
Probab=25.76 E-value=1.3e+02 Score=20.04 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=32.1
Q ss_pred HHHHHhhCCCC--CCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhh
Q psy17417 21 VFLQESRSHPN--LPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKY 65 (87)
Q Consensus 21 ~~~~~l~~~~~--~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~ 65 (87)
..++|+.+.-. +|..+|.-+...|.|+.+...+-+..+.-+.+.+
T Consensus 26 ~v~~Pva~~Y~~v~P~pvr~gv~Nf~~NL~~P~~~vN~lLQgk~~~a 72 (200)
T PF04333_consen 26 YVLRPVAKGYRKVVPDPVRTGVSNFFSNLREPVRFVNNLLQGKFKKA 72 (200)
T ss_pred HHhhhHHhhcchhCCHHHHHHHHHHHHHHHhHHHHHHHHHccCHHHH
Confidence 35667766543 8888888899999999998887774333334444
No 50
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=25.66 E-value=2.4e+02 Score=19.69 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHH
Q psy17417 5 LQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELE 63 (87)
Q Consensus 5 i~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le 63 (87)
-+-|+.|-+.|...-..+..-+...+ .-..++..++.+.+-.+.|-.+|.+ +-..|.
T Consensus 32 A~IE~~Yak~L~~~akkw~~~ie~gp-eyGTl~~aw~~~~~Eae~~s~~H~~-l~~~L~ 88 (258)
T cd07679 32 ARIEKVYAQQLTEWAKRWRQLVEKGP-QYGTVEKAWCALMSEAEKVSELHLE-VKASLM 88 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCC-ccchHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 35699999999998888877666432 2234567889999999999999984 655553
No 51
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=25.54 E-value=1.3e+02 Score=16.69 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCC-CCcchhhhHHhHhcCHHHHHH
Q psy17417 9 RTYVKDLDTCIKVFLQESRSHPN-LPPGLVGKHDIIFGNIEEIRD 52 (87)
Q Consensus 9 ~~Yv~~L~~i~~~~~~~l~~~~~-~p~~~~~~~~~lF~ni~~I~~ 52 (87)
+.|++.+..=++.-++.|.+... +-.++ +++...|++++.+..
T Consensus 16 k~~L~~I~~~~~~i~~~ld~~~~ClL~e~-e~i~~~f~~~q~~As 59 (70)
T PF10372_consen 16 KQYLEQIEEEISQIIQTLDEDDCCLLCEF-EEIREKFLDIQTLAS 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TT--GGGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCceechhH-HHHHHHHHHHHHHHH
Confidence 45666666556666777766533 22222 456666766666543
No 52
>TIGR02677 conserved hypothetical protein TIGR02677. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=24.13 E-value=1.4e+02 Score=22.65 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=34.2
Q ss_pred hhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcCCcchHHHHHhcccccCcC
Q psy17417 36 LVGKHDIIFGNIEEIRDFHRDIFLKELEKYENMPEDLGHCFVTWWWFVRPK 86 (87)
Q Consensus 36 ~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~~~~ig~~Fl~~~~~f~~~ 86 (87)
+...++.|++.++.+.+=.. -|+..|.........-.+.|+.|.+.|-.|
T Consensus 143 v~~~~~~L~~~f~~L~~na~-df~~~L~~~~~~~~~~~e~Fl~yKd~Li~Y 192 (494)
T TIGR02677 143 VHRTLRELYGSFESLADNAQ-AFMADLQRHRPLEVADYEAFLAYKDRLIAY 192 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHcccchhhhcChhHHHHHHHHHHHH
Confidence 33567778888888887776 488888766544445566788877766544
No 53
>KOG0729|consensus
Probab=24.08 E-value=86 Score=22.66 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17417 5 LQTERTYVKDLDTCIKVFLQE 25 (87)
Q Consensus 5 i~TE~~Yv~~L~~i~~~~~~~ 25 (87)
+.||++|++..+.++.+|.+-
T Consensus 405 ~atekdfl~av~kvvkgy~kf 425 (435)
T KOG0729|consen 405 VATEKDFLDAVNKVVKGYAKF 425 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHhc
Confidence 579999999999999999763
No 54
>KOG3524|consensus
Probab=23.55 E-value=2.2e+02 Score=23.10 Aligned_cols=61 Identities=7% Similarity=-0.171 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcch--hhhHHhHhcCHHHHHHHhHHHHHHHHH
Q psy17417 2 AELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGL--VGKHDIIFGNIEEIRDFHRDIFLKELE 63 (87)
Q Consensus 2 ~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~--~~~~~~lF~ni~~I~~~h~~~fl~~Le 63 (87)
.+|++|+-.|+..+-..+..+-.|+.+...+-... -..+..+|+.+++++.-|.. --.+.+
T Consensus 400 v~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~~l~~-nw~e~k 462 (850)
T KOG3524|consen 400 VFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLLDLAQ-NWIEAK 462 (850)
T ss_pred HHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHHHHHH-hhHHHH
Confidence 47899999999998888888888888765321111 13678899988888777663 444444
No 55
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=23.46 E-value=2.5e+02 Score=19.11 Aligned_cols=57 Identities=21% Similarity=0.126 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhh
Q psy17417 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKY 65 (87)
Q Consensus 3 ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~ 65 (87)
|=.+-|+.|.+.|..+...+.+. .-...++.-++.+.+.++.+-..|. .+-..|..-
T Consensus 30 eRa~iE~~Yak~L~kl~kk~~~~-----~e~gTl~~a~~~~~~e~e~~a~~H~-~ia~~L~~~ 86 (242)
T cd07671 30 QRAQAEERYGKELVQIARKAGGQ-----TEINTLKASFDQLKQQIENIGNSHI-QLAGMLREE 86 (242)
T ss_pred HHHHHHHHHHHHHHHHHhhccCc-----ccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44567899999998887765421 1123445677888888899988887 466666543
No 56
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=22.10 E-value=69 Score=19.05 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=19.6
Q ss_pred CCcchhhhHHhHhcCHHHHHHHhH
Q psy17417 32 LPPGLVGKHDIIFGNIEEIRDFHR 55 (87)
Q Consensus 32 ~p~~~~~~~~~lF~ni~~I~~~h~ 55 (87)
.|.++.++....|.||+.+++-..
T Consensus 30 ~~~d~~~Q~~~~l~ni~~~L~~aG 53 (114)
T cd06153 30 HPGDVEAQTRETLENIEALLEAAG 53 (114)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcC
Confidence 366777899999999999988664
No 57
>KOG1760|consensus
Probab=21.72 E-value=45 Score=20.77 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=9.7
Q ss_pred CcchHHHHHhcc
Q psy17417 69 PEDLGHCFVTWW 80 (87)
Q Consensus 69 ~~~ig~~Fl~~~ 80 (87)
|-.||+||+.+.
T Consensus 67 p~~vGdvF~~~~ 78 (131)
T KOG1760|consen 67 PFKVGDVFIHVK 78 (131)
T ss_pred ceehhhhheecc
Confidence 568999998764
No 58
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=21.54 E-value=67 Score=19.43 Aligned_cols=23 Identities=4% Similarity=0.066 Sum_probs=18.5
Q ss_pred CcchhhhHHhHhcCHHHHHHHhH
Q psy17417 33 PPGLVGKHDIIFGNIEEIRDFHR 55 (87)
Q Consensus 33 p~~~~~~~~~lF~ni~~I~~~h~ 55 (87)
|.++.++...+|.||+.+++-..
T Consensus 45 ~~d~~~Q~~~~l~ni~~iL~~aG 67 (127)
T TIGR03610 45 VGDAAAQTRHVLETIKSVIETAG 67 (127)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcC
Confidence 45677889999999999888654
No 59
>PF11334 DUF3136: Protein of unknown function (DUF3136); InterPro: IPR021483 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=21.51 E-value=61 Score=17.74 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=16.2
Q ss_pred ChhHHHHHHHHHHHHHHHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIK 20 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~ 20 (87)
|-||-.+.-.|.+.|+.++.
T Consensus 3 IgELea~y~~YckALr~Lv~ 22 (64)
T PF11334_consen 3 IGELEAGYPLYCKALRRLVA 22 (64)
T ss_pred HHHHHcCchHHHHHHHHHHH
Confidence 45788888899999988864
No 60
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=21.17 E-value=74 Score=19.00 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=19.3
Q ss_pred CCcchhhhHHhHhcCHHHHHHHhH
Q psy17417 32 LPPGLVGKHDIIFGNIEEIRDFHR 55 (87)
Q Consensus 32 ~p~~~~~~~~~lF~ni~~I~~~h~ 55 (87)
.+.++.++....|.||+.+++-..
T Consensus 27 ~~~~~~~Q~~qal~Ni~~vL~~aG 50 (118)
T cd06156 27 LEGGITLQAVLSLQHLERVAKAMN 50 (118)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcC
Confidence 355677899999999999988654
No 61
>KOG1766|consensus
Probab=20.89 E-value=2e+02 Score=17.12 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhCCCC-CCcchhhhHHhHhcCHHHHHHHhH
Q psy17417 14 DLDTCIKVFLQESRSHPN-LPPGLVGKHDIIFGNIEEIRDFHR 55 (87)
Q Consensus 14 ~L~~i~~~~~~~l~~~~~-~p~~~~~~~~~lF~ni~~I~~~h~ 55 (87)
-|.-+...|-..|..... .|+. -=++..+|.-|+++.+++-
T Consensus 28 ~megiCk~yEe~Lkk~nPs~~~I-TYDIsqlfeFiD~L~DlS~ 69 (104)
T KOG1766|consen 28 CMEGICKMYEEHLKKKNPSAPPI-TYDISQLFEFIDDLADLSM 69 (104)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCc-ceeHHHHHHHHHHHhhhhh
Confidence 355566667777765532 3332 2378888888888887764
Done!