Query psy17417
Match_columns 87
No_of_seqs 126 out of 1010
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 21:55:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nty_A Triple functional domai 99.9 6.8E-22 2.3E-26 135.3 7.6 87 1-87 14-101 (311)
2 1kz7_A Guanine nucleotide exch 99.9 3.4E-22 1.2E-26 139.1 6.0 87 1-87 16-105 (353)
3 1by1_A Protein (PIX); RHO-GTPa 99.8 9.2E-22 3.1E-26 128.5 5.4 82 1-86 18-103 (209)
4 2rgn_B RHOA/RAC/CDC42 exchange 99.8 2.1E-21 7.2E-26 135.1 6.1 85 1-87 17-102 (354)
5 2z0q_A XPLN, RHO guanine nucle 99.8 3.2E-20 1.1E-24 128.3 6.7 83 1-87 24-109 (346)
6 1foe_A T-lymphoma invasion and 99.8 5.5E-20 1.9E-24 128.5 7.6 83 1-87 16-114 (377)
7 1dbh_A Protein (human SOS 1); 99.8 8.7E-20 3E-24 126.5 5.2 83 1-87 8-99 (354)
8 2dfk_A Collybistin II; DH doma 99.8 3.2E-19 1.1E-23 126.0 7.3 83 1-87 46-133 (402)
9 2vrw_B P95VAV, VAV1, proto-onc 99.8 3.3E-19 1.1E-23 125.6 6.5 81 1-87 30-112 (406)
10 3jv3_A Intersectin-1; SH3 doma 99.8 4.5E-19 1.5E-23 119.4 6.5 83 1-87 87-175 (283)
11 2pz1_A RHO guanine nucleotide 99.8 7E-19 2.4E-23 125.8 6.8 83 1-87 123-210 (466)
12 1xcg_A PDZ-rhogef, RHO guanine 99.7 3.6E-18 1.2E-22 118.8 5.8 77 1-81 26-105 (368)
13 3t06_A PDZ-rhogef, RHO guanine 99.7 5.5E-18 1.9E-22 119.6 6.2 79 1-83 68-149 (418)
14 3mpx_A FYVE, rhogef and PH dom 99.7 5.3E-18 1.8E-22 120.0 5.9 86 1-87 27-121 (434)
15 3ky9_A Proto-oncogene VAV; cal 99.7 7.5E-18 2.6E-22 123.7 6.8 81 1-87 202-284 (587)
16 3p6a_A RHO guanine nucleotide 99.7 2.5E-18 8.6E-23 119.8 3.9 78 1-82 32-113 (377)
17 1txd_A RHO guanine nucleotide 99.7 9.4E-18 3.2E-22 117.4 5.0 76 1-81 29-110 (385)
18 3odw_A RHO guanine nucleotide 99.7 2E-17 6.7E-22 120.7 5.4 78 1-82 185-266 (536)
19 3ksy_A SOS-1, SON of sevenless 99.7 1.7E-17 5.7E-22 128.4 5.2 83 1-87 205-296 (1049)
20 3jzy_A Intersectin 2; C2 domai 99.7 2.5E-18 8.7E-23 123.3 0.0 83 1-87 32-120 (510)
21 4gou_A EHRGS-rhogef; RGS domai 96.3 0.014 4.8E-07 40.2 6.5 60 2-66 193-252 (518)
22 2kbt_A Chimera of proto-oncoge 75.5 0.57 2E-05 28.3 0.0 20 1-20 111-130 (142)
23 3f1i_H Hepatocyte growth facto 67.3 15 0.00052 21.0 5.2 52 9-64 3-56 (98)
24 1m3w_A H10H24; four-helix bund 62.2 9.1 0.00031 16.9 2.5 18 48-66 4-21 (32)
25 3i2w_A Syndapin, LD46328P; EFC 60.2 32 0.0011 22.4 6.4 60 3-64 33-92 (290)
26 3abh_A Pacsin2, protein kinase 58.8 36 0.0012 22.4 6.4 60 3-64 54-113 (312)
27 3aco_A Pacsin2, protein kinase 53.1 49 0.0017 22.2 6.9 60 3-64 54-113 (350)
28 2x3v_A Syndapin I, protein kin 52.7 48 0.0016 22.0 6.4 60 3-64 45-104 (337)
29 3haj_A Human pacsin2 F-BAR; pa 50.7 64 0.0022 22.9 7.2 61 2-64 46-106 (486)
30 3g9g_A Suppressor of yeast pro 46.6 64 0.0022 21.7 6.7 61 2-63 67-146 (287)
31 3m3w_A Pacsin3, protein kinase 45.6 65 0.0022 21.5 6.2 61 3-65 45-105 (320)
32 2v0o_A FCHO2, FCH domain only 29.4 1.1E+02 0.0038 19.4 6.7 56 3-64 43-98 (276)
33 2efl_A Formin-binding protein 27.6 83 0.0028 20.2 4.0 60 3-63 39-100 (305)
34 1j0g_A Hypothetical protein 18 26.2 31 0.0011 19.2 1.4 15 70-84 68-82 (92)
35 2ljw_A ALR2454 protein; novel 22.7 46 0.0016 19.4 1.7 14 7-20 46-59 (110)
36 2efk_A CDC42-interacting prote 22.5 1.6E+02 0.0055 18.9 4.8 60 4-64 33-94 (301)
37 4dyl_A Tyrosine-protein kinase 20.8 1.8E+02 0.0063 20.0 4.9 60 4-64 38-97 (406)
No 1
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=99.86 E-value=6.8e-22 Score=135.30 Aligned_cols=87 Identities=56% Similarity=0.995 Sum_probs=78.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcCCcchHHHHHhc
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHP-NLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENMPEDLGHCFVTW 79 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~-~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~~~~ig~~Fl~~ 79 (87)
|+||++||++||++|+.+++.|+.|+.+.. .+|+.+.++++.||+|+++|+++|++.|+.+|+++.+.|.+||+||+++
T Consensus 14 i~El~~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~~~~iF~ni~~i~~~h~~~fl~~L~~~~~~~~~ig~~f~~~ 93 (311)
T 1nty_A 14 MAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQLPEDVGHCFVTW 93 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCTTTTTCHHHHHTTHHHHHHHHHHTHHHHHHHTTTCGGGTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 479999999999999999999999998753 4787666788999999999999998339999999988889999999999
Q ss_pred ccccCcCC
Q psy17417 80 WWFVRPKT 87 (87)
Q Consensus 80 ~~~f~~~~ 87 (87)
.+.|+.|+
T Consensus 94 ~~~~~~Y~ 101 (311)
T 1nty_A 94 ADKFQMYV 101 (311)
T ss_dssp TTTTHHHH
T ss_pred HHHhHHHH
Confidence 99998873
No 2
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=99.86 E-value=3.4e-22 Score=139.08 Aligned_cols=87 Identities=39% Similarity=0.618 Sum_probs=78.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCC---CCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcCCcchHHHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHP---NLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENMPEDLGHCFV 77 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~---~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~~~~ig~~Fl 77 (87)
|+||++||++||++|+.+++.|+.|+.+.. .+|+.++++++.||+||++|+++|++.|+.+|+++...|.+||+||+
T Consensus 16 i~ELl~TE~~Yv~~L~~l~~~y~~pl~~~~~~~~~p~~~~~~~~~iF~ni~~I~~~h~~~fl~~Le~~~~~~~~ig~~fl 95 (353)
T 1kz7_A 16 MNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELESCIDCPELVGRCFL 95 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTGGGGCTTTTTTSCHHHHHTHHHHHTTHHHHHHHHHHTHHHHHHTTTTCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChhhhhhHHHHHhCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 479999999999999999999999998764 47776667899999999999999964699999999988999999999
Q ss_pred hcccccCcCC
Q psy17417 78 TWWWFVRPKT 87 (87)
Q Consensus 78 ~~~~~f~~~~ 87 (87)
++.+.|+.|+
T Consensus 96 ~~~~~f~~Y~ 105 (353)
T 1kz7_A 96 ERMEEFQIYE 105 (353)
T ss_dssp TTTTGGGHHH
T ss_pred HhhHHHHHHH
Confidence 9999998873
No 3
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=99.85 E-value=9.2e-22 Score=128.48 Aligned_cols=82 Identities=26% Similarity=0.570 Sum_probs=73.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcCC---cchHHHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENMP---EDLGHCFV 77 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~~---~~ig~~Fl 77 (87)
|+||++||++||++|+.+++.|+.|+.....+|+ ++++.||+|+++|+++|+ .|+.+|+++...| .+||+||+
T Consensus 18 i~ELi~TE~~Yv~~L~~l~~~y~~pl~~~~~l~~---~~~~~iF~ni~~i~~~h~-~fl~~L~~~~~~~~~~~~ig~~f~ 93 (209)
T 1by1_A 18 LQNILETENEYSKELQTVLSTYLRPLQTSEKLSS---ANISYLMGNLEEICSFQQ-MLVQSLEECTKLPEAQQRVGGCFL 93 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSS---SGGGTTHHHHHHHHHHHH-HHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCH---HHHHHHHcCHHHHHHHHH-HHHHHHHHHHcCCcchhhHHHHHH
Confidence 4799999999999999999999999998655665 578999999999999999 5999999998654 48999999
Q ss_pred hcccccC-cC
Q psy17417 78 TWWWFVR-PK 86 (87)
Q Consensus 78 ~~~~~f~-~~ 86 (87)
++.+.|+ .|
T Consensus 94 ~~~~~f~~~Y 103 (209)
T 1by1_A 94 NLMPQMKTLY 103 (209)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999996 76
No 4
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=99.84 E-value=2.1e-21 Score=135.13 Aligned_cols=85 Identities=31% Similarity=0.575 Sum_probs=77.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHH-HHHHHHhhhcCCcchHHHHHhc
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDI-FLKELEKYENMPEDLGHCFVTW 79 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~-fl~~Le~~~~~~~~ig~~Fl~~ 79 (87)
|+||++||++||++|+.+++.|+.|+... .+|..+.++++.||+||++|+++|+ . |+.+|+.+..+|..||+||+++
T Consensus 17 i~ELi~TE~~Yv~~L~~l~~~y~~~l~~~-~~p~~l~~~~~~iF~ni~~I~~~h~-~~fl~~L~~~~~~~~~ig~~fl~~ 94 (354)
T 2rgn_B 17 LSELVETEKMYVDDLGQIVEGYMATMAAQ-GVPESLRGRDRIVFGNIQQIYEWHR-DYFLQELQRCLKDPDWLAQLFIKH 94 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CCCSSSGGGHHHHHTTHHHHHHHHH-HTHHHHHHHHHSCGGGHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhhhhhHHHHhhCHHHHHHHHH-HHHHHHHHHHHcCHHHHHHHHHHh
Confidence 47999999999999999999999999875 4676666678999999999999999 6 9999999998899999999999
Q ss_pred ccccCcCC
Q psy17417 80 WWFVRPKT 87 (87)
Q Consensus 80 ~~~f~~~~ 87 (87)
.+.|++|+
T Consensus 95 ~~~f~~Y~ 102 (354)
T 2rgn_B 95 ERRLHMYV 102 (354)
T ss_dssp TTTTHHHH
T ss_pred HHHHHHHH
Confidence 99998873
No 5
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=99.81 E-value=3.2e-20 Score=128.35 Aligned_cols=83 Identities=20% Similarity=0.338 Sum_probs=74.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC---CcchHHHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM---PEDLGHCFV 77 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~---~~~ig~~Fl 77 (87)
|+||++||++||++|+.+++.|+.|+...+.+|+ ++++.||+|+++|+++|+ .|+.+|+++... +.+||+||+
T Consensus 24 i~Eli~TE~~Yv~~L~~l~~~y~~~l~~~~~l~~---~~~~~iF~ni~~i~~~h~-~fl~~L~~~~~~~~~~~~ig~~f~ 99 (346)
T 2z0q_A 24 IFELSQGEEDLIEDLKLAKKAYHDPMLKLSIMTE---QELNQIFGTLDSLIPLHE-ELLSQLRDVRKPDGSTEHVGPILV 99 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSSCH---HHHHHHHTTHHHHHHHHH-HHHHHHHHHCCTTSCCSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH---HHHHHHhccHHHHHHHHH-HHHHHHHHHhccCCccchHHHHHH
Confidence 4799999999999999999999999998655775 578999999999999999 599999998753 568999999
Q ss_pred hcccccCcCC
Q psy17417 78 TWWWFVRPKT 87 (87)
Q Consensus 78 ~~~~~f~~~~ 87 (87)
++.+.|++|+
T Consensus 100 ~~~~~~~~Y~ 109 (346)
T 2z0q_A 100 GWLPCLSSYD 109 (346)
T ss_dssp HHGGGGGHHH
T ss_pred HHhhHHHHHH
Confidence 9999999884
No 6
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=99.81 E-value=5.5e-20 Score=128.49 Aligned_cols=83 Identities=35% Similarity=0.554 Sum_probs=73.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC-C----------
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM-P---------- 69 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~-~---------- 69 (87)
|+||++||++||++|+.+++.|+.|+...+.+|+ ++++.||+||++|+++|+ .|+.+|+++... |
T Consensus 16 i~Eli~TE~~Yv~~L~~l~~~y~~pl~~~~~l~~---~~~~~iF~ni~~I~~~h~-~fl~~L~~~~~~~~~~~~~~~~~~ 91 (377)
T 1foe_A 16 ICELLETERTYVKDLNCLMERYLKPLQKETFLTQ---DELDVLFGNLTEMVEFQV-EFLKTLEDGVRLVPDLEKLEKVDQ 91 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHTSSSSCH---HHHHHHHSSHHHHHHHHH-HHHHHHHHHHTTSSCGGGCCSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHhCHHHHHHHHH-HHHHHHHHHHhcCCcchhhhhhhh
Confidence 5799999999999999999999999998655665 578999999999999999 699999998642 1
Q ss_pred -----cchHHHHHhcccccCcCC
Q psy17417 70 -----EDLGHCFVTWWWFVRPKT 87 (87)
Q Consensus 70 -----~~ig~~Fl~~~~~f~~~~ 87 (87)
.+||+||+++.+.|+.|+
T Consensus 92 ~~~~~~~ig~~f~~~~~~f~~Y~ 114 (377)
T 1foe_A 92 FKKVLFSLGGSFLYYADRFKLYS 114 (377)
T ss_dssp GHHHHHHHHHHHHHHTTGGGGHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999883
No 7
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=99.79 E-value=8.7e-20 Score=126.47 Aligned_cols=83 Identities=23% Similarity=0.392 Sum_probs=72.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhc-----CC-cchH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPN-LPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYEN-----MP-EDLG 73 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~-~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~-----~~-~~ig 73 (87)
|+||++||++||++|+.+++.|+.|+.+... +++ ++++.||+||++|+++|+ .|+.+|+++.. .+ .+||
T Consensus 8 i~Eli~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~---~~~~~iF~ni~~I~~~h~-~fl~~L~~~~~~~~~~~~~~~ig 83 (354)
T 1dbh_A 8 VKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSA---NDVENIFSRIVDIHELSV-KLLGHIEDTVEMTDEGSPHPLVG 83 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHCTTTCCH---HHHHHHHTTHHHHHHHHH-HHHHHHHHHHHTCCTTSSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCH---HHHHHHHcCHHHHHHHHH-HHHHHHHHHHhccccCCccchHH
Confidence 5799999999999999999999999997543 453 678999999999999999 59999998863 23 6799
Q ss_pred HHHHhccc--ccCcCC
Q psy17417 74 HCFVTWWW--FVRPKT 87 (87)
Q Consensus 74 ~~Fl~~~~--~f~~~~ 87 (87)
+||+++.+ .|++|+
T Consensus 84 ~~f~~~~~~~~f~~Y~ 99 (354)
T 1dbh_A 84 SCFEDLAEELAFDPYE 99 (354)
T ss_dssp HHHHHHHHTTTTHHHH
T ss_pred HHHHHHhHHhhhhHHH
Confidence 99999999 788873
No 8
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=99.78 E-value=3.2e-19 Score=125.97 Aligned_cols=83 Identities=31% Similarity=0.538 Sum_probs=72.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC--C--cchHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHP-NLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM--P--EDLGHC 75 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~-~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~--~--~~ig~~ 75 (87)
|+||++||++||++|+.+++.|+.|+.... .++. ++++.||+||++|+++|+ .|+.+|+++... | .+||+|
T Consensus 46 i~ELl~TE~~Yv~~L~~l~~~y~~pl~~~~~~l~~---~~~~~iF~ni~~I~~~h~-~fL~~Le~~~~~~~~~~~~ig~i 121 (402)
T 2dfk_A 46 INEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSD---EQLKVIFGNIEDIYRFQM-GFVRDLEKQYNNDDPHLSEIGPC 121 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHCTTTCCH---HHHHHHHTTHHHHHHHHH-HHHHHHHHHCCSSCGGGCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCH---HHHHHHHhcHHHHHHHHH-HHHHHHHHHHccCCCchhhHHHH
Confidence 479999999999999999999999997533 3553 578999999999999999 599999998753 2 589999
Q ss_pred HHhcccccCcCC
Q psy17417 76 FVTWWWFVRPKT 87 (87)
Q Consensus 76 Fl~~~~~f~~~~ 87 (87)
|+++.+.|+.|+
T Consensus 122 fl~~~~~f~~Y~ 133 (402)
T 2dfk_A 122 FLEHQDGFWIYS 133 (402)
T ss_dssp HHHTTTGGGHHH
T ss_pred HHHHHhhhHHHH
Confidence 999999998873
No 9
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=99.77 E-value=3.3e-19 Score=125.63 Aligned_cols=81 Identities=28% Similarity=0.346 Sum_probs=72.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC--CcchHHHHHh
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM--PEDLGHCFVT 78 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~--~~~ig~~Fl~ 78 (87)
|+||++||++||++|+.+++.|+.|+.+ .+++ ++++.||+||++|+++|+ .|+.+|+++... +.+||+||++
T Consensus 30 i~ELi~TE~~Yv~~L~~l~~~f~~~l~~--~l~~---~~~~~iF~ni~~i~~~h~-~fl~~L~~~~~~~~~~~ig~~f~~ 103 (406)
T 2vrw_B 30 LREIQQTEEKYTDTLGSIQQHFMKPLQR--FLKP---QDMETIFVNIEELFSVHT-HFLKELKDALAGPGATTLYQVFIK 103 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHTT--TSCH---HHHHHHHTTHHHHHHHHH-HHHHHHHHHHHSGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCH---HHHHHHhcCHHHHHHHHH-HHHHHHHHHhcCCCccHHHHHHHH
Confidence 4799999999999999999999999975 4554 578999999999999999 599999999764 5789999999
Q ss_pred cccccCcCC
Q psy17417 79 WWWFVRPKT 87 (87)
Q Consensus 79 ~~~~f~~~~ 87 (87)
+.+.|+.|+
T Consensus 104 ~~~~~~~Y~ 112 (406)
T 2vrw_B 104 YKERFLVYG 112 (406)
T ss_dssp HTTGGGHHH
T ss_pred HHHHHHHHH
Confidence 999999884
No 10
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=99.77 E-value=4.5e-19 Score=119.41 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=72.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhc---C---CcchHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYEN---M---PEDLGH 74 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~---~---~~~ig~ 74 (87)
|+||++||++||++|+.+++.|+.|+.....++. .+++.||+|+++|+.+|+ .|+.+|+.+.. . ...||+
T Consensus 87 i~ELi~TE~~Yv~~L~~l~~~y~~~l~~~~~l~~---~~~~~iF~ni~~i~~~~~-~fl~~L~~~~~~~~~~~~~~~ig~ 162 (283)
T 3jv3_A 87 IHELIVTEENYVNDLQLVTEIFQKPLTESELLTE---KEVAMIFVNWKELIMCNI-KLLKALRVRKKMSGEKMPVKMIGD 162 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHTTCSSCH---HHHHHHHTTHHHHHHHHH-HHHHHHHHHHHHHCTTCCCCCCHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhccccCCCCH---HHHHHHccCHHHHHHHHH-HHHHHHHHHHhccccCCchhHHHH
Confidence 4799999999999999999999999998655664 578999999999999999 69999998753 1 368999
Q ss_pred HHHhcccccCcCC
Q psy17417 75 CFVTWWWFVRPKT 87 (87)
Q Consensus 75 ~Fl~~~~~f~~~~ 87 (87)
||+++.+.|++|+
T Consensus 163 ~f~~~~~~~~~Y~ 175 (283)
T 3jv3_A 163 ILSAQLPHMQPYI 175 (283)
T ss_dssp HHHHHGGGGTHHH
T ss_pred HHHHHHhhchhHH
Confidence 9999999999883
No 11
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=99.76 E-value=7e-19 Score=125.80 Aligned_cols=83 Identities=31% Similarity=0.547 Sum_probs=72.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC--C--cchHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPN-LPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM--P--EDLGHC 75 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~-~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~--~--~~ig~~ 75 (87)
|+||++||++||++|+.+++.|+.|+..... ++. ++++.||+||++|+++|+ .|+.+|+++... | .+||+|
T Consensus 123 i~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~---~~~~~iF~ni~~I~~~h~-~fL~~Le~~~~~~~~~~~~ig~~ 198 (466)
T 2pz1_A 123 INEILSTERDYIKHLRDICEGYVRQCRKRADMFSE---EQLRTIFGNIEDIYRCQK-AFVKALEQRFNRERPHLSELGAC 198 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHCTTTCCH---HHHHHHHTTHHHHHHHHH-HHHHHHHHHCCSSCGGGCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCH---HHHHHHHcCHHHHHHHHH-HHHHHHHHHHccCCCccchHHHH
Confidence 4799999999999999999999999975333 443 578999999999999999 599999998753 2 589999
Q ss_pred HHhcccccCcCC
Q psy17417 76 FVTWWWFVRPKT 87 (87)
Q Consensus 76 Fl~~~~~f~~~~ 87 (87)
|+++.+.|+.|+
T Consensus 199 fl~~~~~f~~Y~ 210 (466)
T 2pz1_A 199 FLEHQADFQIYS 210 (466)
T ss_dssp HHHTHHHHTTHH
T ss_pred HHHhhHHHHHHH
Confidence 999999999884
No 12
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=99.73 E-value=3.6e-18 Score=118.77 Aligned_cols=77 Identities=17% Similarity=0.317 Sum_probs=67.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC---CcchHHHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM---PEDLGHCFV 77 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~---~~~ig~~Fl 77 (87)
|+||++||++||++|+.+++.|+.|+...+.+|+ ++++.||+||++|+++|+ .|+.+|+++... ..+||+||+
T Consensus 26 i~ELi~TE~~Yv~~L~~l~~~f~~~l~~~~~l~~---~~~~~iF~ni~~i~~~h~-~fl~~L~~~~~~~~~~~~ig~~f~ 101 (368)
T 1xcg_A 26 INELFVTEASHLRTLRVLDLIFYQRMKKENLMPR---EELARLFPNLPELIEIHN-SWCEAMKKLREEGPIIKEISDLML 101 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSSCH---HHHHHHSSSHHHHHHHHH-HHHHHHHHHHHTCSSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHhCCHHHHHHHHH-HHHHHHHHHHhcCCCcCcHHHHHH
Confidence 4799999999999999999999999998655665 578999999999999999 599999998753 248999999
Q ss_pred hccc
Q psy17417 78 TWWW 81 (87)
Q Consensus 78 ~~~~ 81 (87)
++.+
T Consensus 102 ~~~~ 105 (368)
T 1xcg_A 102 ARFD 105 (368)
T ss_dssp HHHS
T ss_pred HHcc
Confidence 9753
No 13
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=99.72 E-value=5.5e-18 Score=119.58 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=69.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC---CcchHHHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM---PEDLGHCFV 77 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~---~~~ig~~Fl 77 (87)
|+||++||++||++|+.+++.|+.|+.....+|. .+++.||+||++|+++|+ .|+.+|+++... ..+||+||+
T Consensus 68 i~ELi~TE~~Yv~~L~~l~~~y~~~l~~~~~l~~---~~~~~iF~ni~~I~~~h~-~fl~~L~~~~~~~~~~~~ig~ifl 143 (418)
T 3t06_A 68 INELFVTEASHLRTLRVLDLIFYQRMKKENLMPR---EELARLFPNLPELIEIHN-SWCEAMKKLREEGPIIKEISDLML 143 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSSCH---HHHHHHSSSHHHHHHHHH-HHHHHHHHHGGGCSSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH---HHHHHHHccHHHHHHHHH-HHHHHHHHHHhcCCCcCcHHHHHH
Confidence 4799999999999999999999999998655665 578999999999999999 599999998754 358999999
Q ss_pred hccccc
Q psy17417 78 TWWWFV 83 (87)
Q Consensus 78 ~~~~~f 83 (87)
++.+.|
T Consensus 144 ~~~~~~ 149 (418)
T 3t06_A 144 ARFDGP 149 (418)
T ss_dssp HHHSTH
T ss_pred Hhcchh
Confidence 987764
No 14
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=5.3e-18 Score=120.02 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=71.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCC-----CCCCcch-hhhHHhHhcCHHHHHHHhHHHHHHHHHhhhc---CCcc
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSH-----PNLPPGL-VGKHDIIFGNIEEIRDFHRDIFLKELEKYEN---MPED 71 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~-----~~~p~~~-~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~---~~~~ 71 (87)
|+||++||++||++|+.+++.|+.|+... ...++.+ .++++.||+||++|+++|+ .|+.+|+++.. .+..
T Consensus 27 i~ELl~TE~~Yv~~L~~l~~~f~~pl~~~l~~~~~~~~~~l~~~~~~~iF~ni~~I~~~h~-~fL~~L~~~~~~~~~~~~ 105 (434)
T 3mpx_A 27 AQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAREELRQGLSELPAIHDLHQ-GILEELEERLSNWESQQK 105 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHhccCccc
Confidence 47999999999999999999999998642 1112222 3688999999999999999 59999999874 3679
Q ss_pred hHHHHHhcccccCcCC
Q psy17417 72 LGHCFVTWWWFVRPKT 87 (87)
Q Consensus 72 ig~~Fl~~~~~f~~~~ 87 (87)
||+||+++.+.|+.|+
T Consensus 106 ig~ifl~~~~~~~~Y~ 121 (434)
T 3mpx_A 106 VADVFLAREQGFDHHA 121 (434)
T ss_dssp CTHHHHTTTTTHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 9999999999998873
No 15
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.72 E-value=7.5e-18 Score=123.66 Aligned_cols=81 Identities=28% Similarity=0.380 Sum_probs=72.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC--CcchHHHHHh
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM--PEDLGHCFVT 78 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~--~~~ig~~Fl~ 78 (87)
|+||++||++||++|+.+++.|+.|+.+ .+++ .+++.||+||++|+++|+ .|+.+|+++... +.+||+||++
T Consensus 202 i~ELi~TE~~Yv~~L~~l~~~y~~~L~~--~l~~---~~~~~iF~ni~~I~~~h~-~fL~~L~~~~~~~~~~~ig~if~~ 275 (587)
T 3ky9_A 202 LREIQQTEEKYTDTLGSIQQHFLKPLQR--FLKP---QDIEIIFINIEDLLRVHT-HFLKEMKEALGTPGAANLYQVFIK 275 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHT--TSCT---TTSHHHHHHHHHHHHHHH-HHHHHHHHHHHSSTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCH---HHHHHHHhcHHHHHHHHH-HHHHHHHHHHhccCccHHHHHHHH
Confidence 4799999999999999999999999986 4554 467899999999999999 599999998864 6799999999
Q ss_pred cccccCcCC
Q psy17417 79 WWWFVRPKT 87 (87)
Q Consensus 79 ~~~~f~~~~ 87 (87)
+.+.|+.|+
T Consensus 276 ~~~~f~~Y~ 284 (587)
T 3ky9_A 276 YKERFLVYG 284 (587)
T ss_dssp TTTGGGHHH
T ss_pred HHHhcchHH
Confidence 999999873
No 16
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=99.72 E-value=2.5e-18 Score=119.76 Aligned_cols=78 Identities=26% Similarity=0.363 Sum_probs=68.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC----CcchHHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM----PEDLGHCF 76 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~----~~~ig~~F 76 (87)
|+||++||++||++|+.+++.|+.|+.....+|. ++++.||+||++|+++|+ .|+.+|+++... ..+||+||
T Consensus 32 i~ELi~TE~~Yv~~L~~l~~~y~~~l~~~~~l~~---~~~~~iF~ni~~I~~~h~-~fl~~L~~~~~~~~~~~~~ig~~f 107 (377)
T 3p6a_A 32 ISELLVTEAAHVRMLRVLHDLFFQPMAECLFFPL---EELQNIFPSLDELIEVHS-LFLDRLMKRRQESGYLIEEIGDVL 107 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHTSSCH---HHHHHHSTTHHHHHHHHH-HHHHHHHHHHHHC--CCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCH---HHHHHHHccHHHHHHHHH-HHHHHHHHHHhccCCCCCcHHHHH
Confidence 4799999999999999999999999998655665 578999999999999999 599999987542 35899999
Q ss_pred Hhcccc
Q psy17417 77 VTWWWF 82 (87)
Q Consensus 77 l~~~~~ 82 (87)
+++.+.
T Consensus 108 l~~~~~ 113 (377)
T 3p6a_A 108 LARFDG 113 (377)
T ss_dssp HHHHSH
T ss_pred HHHhcc
Confidence 999874
No 17
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=99.70 E-value=9.4e-18 Score=117.44 Aligned_cols=76 Identities=32% Similarity=0.456 Sum_probs=66.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhc------CCcchHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYEN------MPEDLGH 74 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~------~~~~ig~ 74 (87)
|+||++||++||++|+.+++.|+.|+...+.+|+ ++++.||+||++|+++| . ||.+|+++.. .+.+||+
T Consensus 29 i~ELi~TE~~Yv~~L~~l~~~f~~~l~~~~~l~~---~~~~~iF~ni~~I~~~h-~-fL~~l~~~~~~~~~~~~~~~ig~ 103 (385)
T 1txd_A 29 INELFYTERAHVRTLKVLDQVFYQRVSREGILSP---SELRKIFSNLEDILQLH-I-GLNEQMKAVRKRNETSVIDQIGE 103 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCSCH---HHHHHHHTTHHHHHHHH-H-HHHHHHHHHHTTCTTCCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH---HHHHHHhcCHHHHHHHH-H-HHHHHHHHHHHhhcCCCcccHHH
Confidence 4799999999999999999999999998655665 57899999999999999 5 9999998642 2468999
Q ss_pred HHHhccc
Q psy17417 75 CFVTWWW 81 (87)
Q Consensus 75 ~Fl~~~~ 81 (87)
||+++.+
T Consensus 104 ~fl~~~~ 110 (385)
T 1txd_A 104 DLLTWFS 110 (385)
T ss_dssp HHHHHHS
T ss_pred HHHHHcc
Confidence 9999964
No 18
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=99.69 E-value=2e-17 Score=120.70 Aligned_cols=78 Identities=26% Similarity=0.363 Sum_probs=68.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC----CcchHHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM----PEDLGHCF 76 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~----~~~ig~~F 76 (87)
|+||++||++||++|+.+++.|+.|+.....++. .+++.||+||++|+++|+ .|+.+|+++... ..+||+||
T Consensus 185 i~ELi~TE~~YV~~L~~l~~~y~~pl~~~~~l~~---~~~~~IF~nie~I~~~h~-~fL~~L~~~~~~~~~~~~~Igdif 260 (536)
T 3odw_A 185 ISELLVTEAAHVRMLRVLHDLFFQPMAECLFFPL---EELQNIFPSLDELIEVHS-LFLDRLMKRRQESGYLIEEIGDVL 260 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSSCH---HHHHHHSTTHHHHHHHHH-HHHHHHHHHHHTC---CCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHhhHHHHHHHHH-HHHHHHHHHHHhcCcccccHHHHH
Confidence 4799999999999999999999999998655665 578999999999999999 699999987643 36899999
Q ss_pred Hhcccc
Q psy17417 77 VTWWWF 82 (87)
Q Consensus 77 l~~~~~ 82 (87)
+++.+.
T Consensus 261 l~~~~~ 266 (536)
T 3odw_A 261 LARFDG 266 (536)
T ss_dssp HHHHSH
T ss_pred HHHcch
Confidence 999874
No 19
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.69 E-value=1.7e-17 Score=128.41 Aligned_cols=83 Identities=23% Similarity=0.380 Sum_probs=71.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC------CcchH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPN-LPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM------PEDLG 73 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~-~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~------~~~ig 73 (87)
|+||++||++||++|+.+++.|+.|+..... +++ ++++.||+||++|+++|+ .|+.+|+++... ..+||
T Consensus 205 I~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~~l~~---~~~~~IF~Ni~~I~~~h~-~fL~~Le~~~~~~~~~~~~~~Ig 280 (1049)
T 3ksy_A 205 VKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSA---NDVENIFSRIVDIHELSV-KLLGHIEDTVEMTDEGSPHPLVG 280 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHCTTTSCH---HHHHHHHSSHHHHHHHHH-HHHHHHHHHHHHCCSSSSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCH---HHHHHHhcCHHHHHHHHH-HHHHHHHHHHhccccCCchhhHH
Confidence 5899999999999999999999999998643 453 578999999999999999 599999998651 26899
Q ss_pred HHHHhccc--ccCcCC
Q psy17417 74 HCFVTWWW--FVRPKT 87 (87)
Q Consensus 74 ~~Fl~~~~--~f~~~~ 87 (87)
+||+++++ .|++|+
T Consensus 281 diFl~~~~~~~F~~Y~ 296 (1049)
T 3ksy_A 281 SCFEDLAEELAFDPYE 296 (1049)
T ss_dssp HHHHHHHHTTTTSHHH
T ss_pred HHHHHHHHHhhhhHHH
Confidence 99999976 777773
No 20
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.68 E-value=2.5e-18 Score=123.25 Aligned_cols=83 Identities=24% Similarity=0.320 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhhcC------CcchHH
Q psy17417 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENM------PEDLGH 74 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~~~------~~~ig~ 74 (87)
|+||++||++||++|+.+++.|+.|+.....++. ++++.||+||++|+++|+ .|+.+|+.+... ...||+
T Consensus 32 i~ELi~TE~~Yv~~L~~l~~~y~~~l~~~~~l~~---~~~~~iF~ni~~i~~~h~-~fl~~L~~~~~~~~~~~~~~~ig~ 107 (510)
T 3jzy_A 32 IHELIQTEERYMADLQLVVEVFQKRMAESGFLTE---GEMALIFVNWKELIMSNT-KLLKALRVRKKTGGEKMPVQMIGD 107 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH---HHHHHHccCHHHHHHHHH-HHHHHHHHHHhccCCCCchhhHHH
Confidence 5899999999999999999999999987655554 577899999999999999 699999988642 258999
Q ss_pred HHHhcccccCcCC
Q psy17417 75 CFVTWWWFVRPKT 87 (87)
Q Consensus 75 ~Fl~~~~~f~~~~ 87 (87)
||+++.+.|++|+
T Consensus 108 ~f~~~~~~~~~Y~ 120 (510)
T 3jzy_A 108 ILAAELSHMQAYI 120 (510)
T ss_dssp -------------
T ss_pred HHHHHhHHHHHHH
Confidence 9999999999984
No 21
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}
Probab=96.28 E-value=0.014 Score=40.24 Aligned_cols=60 Identities=23% Similarity=0.338 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhhh
Q psy17417 2 AELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYE 66 (87)
Q Consensus 2 ~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~~ 66 (87)
..|++.|..||..|..+ +.|-..|..+..+.++ -.+.+|..|+.+...|+ +|...|+++.
T Consensus 193 esliqdecnyvgvltsl-sefseimtkkqilgpd---vlkelfdhipvliqhhq-kfisslqeak 252 (518)
T 4gou_A 193 ESLIQDECNYVGVLTSL-SEFSEIMTKKQILGPD---VLKELFDHIPVLIQHHQ-KFISSLQEAK 252 (518)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHTTCSCHH---HHHHHHTTHHHHHHHHH-HHHHHHTSTT
T ss_pred HHHHHhhccceeehhhH-HHHHHHHHhhhccChH---HHHHHHhhchHHHHHHH-HHHHHHHHhh
Confidence 35788999999999875 6688888877667664 35789999999999998 7999998775
No 22
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}
Probab=75.48 E-value=0.57 Score=28.34 Aligned_cols=20 Identities=20% Similarity=0.066 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHHH
Q psy17417 1 MAELLQTERTYVKDLDTCIK 20 (87)
Q Consensus 1 i~ELi~TE~~Yv~~L~~i~~ 20 (87)
++++++||+.|++.|+.+..
T Consensus 111 ~~~~~~~E~~y~~~~~~~~~ 130 (142)
T 2kbt_A 111 NDNGVDGEWTYDDATKTFTV 130 (142)
T ss_dssp --------------------
T ss_pred hhcCccchhhHHHHHhhccc
Confidence 35788999999999998865
No 23
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=67.25 E-value=15 Score=20.96 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCC--CCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHh
Q psy17417 9 RTYVKDLDTCIKVFLQESRSHPN--LPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEK 64 (87)
Q Consensus 9 ~~Yv~~L~~i~~~~~~~l~~~~~--~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~ 64 (87)
..|++.|+.-++.|...|++... -|..--..+..||-++... |. .++.-+++
T Consensus 3 ~ef~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~M---H~-~Ll~~i~~ 56 (98)
T 3f1i_H 3 EQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGM---HP-QLLELLNQ 56 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHH---HH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHH---HH-HHHHHHHH
Confidence 36889999999999999986542 3322124678888887765 55 36655543
No 24
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=62.18 E-value=9.1 Score=16.89 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=13.4
Q ss_pred HHHHHHhHHHHHHHHHhhh
Q psy17417 48 EEIRDFHRDIFLKELEKYE 66 (87)
Q Consensus 48 ~~I~~~h~~~fl~~Le~~~ 66 (87)
-+|+.+|. .|+...++-+
T Consensus 4 geiwklhe-eflkkfeell 21 (32)
T 1m3w_A 4 GEIWKLHE-EFLKKFEELL 21 (32)
T ss_dssp HHHHHHHH-HHHHHHHHHH
T ss_pred chHHHHHH-HHHHHHHHHH
Confidence 36888888 5888887654
No 25
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=60.24 E-value=32 Score=22.35 Aligned_cols=60 Identities=22% Similarity=0.182 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHh
Q psy17417 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEK 64 (87)
Q Consensus 3 ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~ 64 (87)
|=..-|+.|.+.|..+...|.+.+...+. +..+..-+..+....+.+-..|. .+-..|..
T Consensus 33 eRa~iE~~Yak~L~kL~~~~~~~~~~~~~-~gs~~~aw~~~~~~~e~~a~~h~-~~a~~l~~ 92 (290)
T 3i2w_A 33 ERADIEKGYAKSLRTWSKKWGELIEKGPE-YGTTEAAWKGVLTESERISDVHM-KIKDNLCN 92 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CchHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44567999999999999988765543222 23344567888888888999888 58777744
No 26
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=58.78 E-value=36 Score=22.40 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHh
Q psy17417 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEK 64 (87)
Q Consensus 3 ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~ 64 (87)
|=..-|+.|.+.|..+...+.......+. ...+..-+..+....+.+-..|. .|-..|..
T Consensus 54 eRa~iE~eYak~L~kLakk~~~~~~~~~e-~gtl~~aw~~i~~e~e~~a~~H~-~~a~~L~~ 113 (312)
T 3abh_A 54 ERARIEKAYAQQLTEWARRWRQLVEKGPQ-YGTVEKAWMAFMSEAERVSELHL-EVKASLMN 113 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34566999999999999888765433222 23445568888899999999998 48777764
No 27
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=53.09 E-value=49 Score=22.22 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHh
Q psy17417 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEK 64 (87)
Q Consensus 3 ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~ 64 (87)
|=..-|+.|.+.|..+...|.......+. ...+..-+..+....+.+-..|. .|-..|..
T Consensus 54 eRa~IE~eYak~L~kLakk~~~~~~~~~e-~gtl~~aw~~l~~e~e~~a~~H~-~la~~L~~ 113 (350)
T 3aco_A 54 ERARIEKAYAQQLTEWARRWRQLVEKGPQ-YGTVEKAWMAFMSEAERVSELHL-EVKASLMN 113 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSC-CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34566999999999999988765543322 23445568888889999999998 48777764
No 28
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=52.70 E-value=48 Score=22.02 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHh
Q psy17417 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEK 64 (87)
Q Consensus 3 ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~ 64 (87)
|=..-|+.|.+.|..+...+...+...+. ...+..-+..+....+.+-..|. .|-..|..
T Consensus 45 eRa~iE~eYak~L~kLakk~~~~~~~~~~-~gtl~~aw~~~~~e~e~~a~~H~-~~a~~L~~ 104 (337)
T 2x3v_A 45 ERAKIEKAYAQQLTDWAKRWRQLIEKGPQ-YGSLERAWGAMMTEADKVSELHQ-EVKNSLLN 104 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCC-CchHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44567999999999999988876643322 23344567888888899999998 47777754
No 29
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=50.66 E-value=64 Score=22.89 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHh
Q psy17417 2 AELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEK 64 (87)
Q Consensus 2 ~ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~ 64 (87)
+|=..-|+.|.+.|..+...|...+...... ..+..-+..+....+.+-..|. .+-..|..
T Consensus 46 keRa~iE~eYAk~L~kLakk~~~~~~~~~e~-gtl~~aw~~~~~e~e~~a~~H~-~~a~~L~~ 106 (486)
T 3haj_A 46 HERARIEKAYAQQLTEWARRWRQLVEKGPQY-GTVEKAWMAFMSEAERVSELHL-EVKASLMN 106 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCC-SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCc-cHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3445679999999999999887766543222 3345678888888999999998 58777743
No 30
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=46.62 E-value=64 Score=21.69 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH---H-----hhCC----------C-CCCcchhhhHHhHhcCHHHHHHHhHHHHHHHH
Q psy17417 2 AELLQTERTYVKDLDTCIKVFLQ---E-----SRSH----------P-NLPPGLVGKHDIIFGNIEEIRDFHRDIFLKEL 62 (87)
Q Consensus 2 ~ELi~TE~~Yv~~L~~i~~~~~~---~-----l~~~----------~-~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~L 62 (87)
+|--+-|+.|.+.|..+...+.+ . +++. . .-...+..-++.+.+-++.+...|. .+-..|
T Consensus 67 kERa~IEe~YakqLrkLakk~~~l~k~~~~~~~~~~vlt~ee~~~~~~~e~G~l~~~W~~v~~e~e~~a~~H~-~la~~L 145 (287)
T 3g9g_A 67 KELANLKRNYAQQLRKIIAENEDITKILNAQMIESNVLTPQEMSAFRFNSLGELRNVWDTVIEELKSDLKSST-EYYNTL 145 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTSSCHHHHHHCCCCCSTTHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhccccccchhhccccccccccHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 46667799999999999887651 1 1221 0 1122234568888999999999998 587777
Q ss_pred H
Q psy17417 63 E 63 (87)
Q Consensus 63 e 63 (87)
.
T Consensus 146 ~ 146 (287)
T 3g9g_A 146 D 146 (287)
T ss_dssp H
T ss_pred H
Confidence 5
No 31
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=45.58 E-value=65 Score=21.49 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHhh
Q psy17417 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKY 65 (87)
Q Consensus 3 ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~~ 65 (87)
|=..-|+.|.+.|..+...|...+... .-+..+..-+..+..-.+.+-..|. .+-..|..-
T Consensus 45 eRa~iE~~Yak~L~kLakk~~~~~~~~-~e~gsl~~aw~~i~~e~e~~a~~H~-~~a~~l~~~ 105 (320)
T 3m3w_A 45 ERARIEKAYAQQLADWARKWRGAVEKG-PQYGTLEKAWHAFFTAAERLSELHL-EVREKLHGP 105 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC-CCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 335679999999999998887655432 2233445568888888899999998 577777553
No 32
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=29.38 E-value=1.1e+02 Score=19.37 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHh
Q psy17417 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEK 64 (87)
Q Consensus 3 ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~ 64 (87)
|=..-|+.|.+.|..+...+... .-+..+..-+..+....+.+-..|. .+-..|.+
T Consensus 43 eRa~iE~eYak~L~kLa~~~~~~-----~~~gs~~~~w~~~~~~~e~~a~~h~-~~a~~l~~ 98 (276)
T 2v0o_A 43 ERATIEEAYSRSMTKLAKSASNY-----SQLGTFAPVWDVFKTSTEKLANCHL-DLVRKLQE 98 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS-----CCCSSSGGGHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-----CCcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44566999999999998887541 1222334567788888888888888 47776643
No 33
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=27.63 E-value=83 Score=20.25 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--cchhhhHHhHhcCHHHHHHHhHHHHHHHHH
Q psy17417 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLP--PGLVGKHDIIFGNIEEIRDFHRDIFLKELE 63 (87)
Q Consensus 3 ELi~TE~~Yv~~L~~i~~~~~~~l~~~~~~p--~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le 63 (87)
|-..-|+.|.+.|..+...+.........-| ..+..-+..+....+.+-..|. .+-..|.
T Consensus 39 eRa~iE~eYak~L~kLa~~~~~~~~~~~~~~~~~t~~~aw~~~~~~~e~~a~~h~-~~a~~l~ 100 (305)
T 2efl_A 39 ERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAGQHE-VISENMA 100 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCC-------CTTSHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCccccccccHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4456689999999998887754331111111 1334567778888888888887 4766663
No 34
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=26.19 E-value=31 Score=19.16 Aligned_cols=15 Identities=20% Similarity=0.261 Sum_probs=12.5
Q ss_pred cchHHHHHhcccccC
Q psy17417 70 EDLGHCFVTWWWFVR 84 (87)
Q Consensus 70 ~~ig~~Fl~~~~~f~ 84 (87)
+.-|.+|++|...++
T Consensus 68 QtAGnvFlKhGseLr 82 (92)
T 1j0g_A 68 QTAGNVFLKHGSELR 82 (92)
T ss_dssp SBHHHHHHHTCSEEE
T ss_pred hccchhhhhcCceeE
Confidence 578999999988765
No 35
>2ljw_A ALR2454 protein; novel fold, structural genomics, northeast structural genomi consortium, NESG, PSI-biology, protein structure initiative function; NMR {Nostoc SP}
Probab=22.65 E-value=46 Score=19.38 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHH
Q psy17417 7 TERTYVKDLDTCIK 20 (87)
Q Consensus 7 TE~~Yv~~L~~i~~ 20 (87)
||.+|...|..+.+
T Consensus 46 tE~eY~~hL~~va~ 59 (110)
T 2ljw_A 46 NETEYQEHLDSVAN 59 (110)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 79999999998765
No 36
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=22.50 E-value=1.6e+02 Score=18.86 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCc-chhhhHHhHhcCHHHHHHHhHHHHHHHHHh
Q psy17417 4 LLQTERTYVKDLDTCIKVFLQESRSHP-NLPP-GLVGKHDIIFGNIEEIRDFHRDIFLKELEK 64 (87)
Q Consensus 4 Li~TE~~Yv~~L~~i~~~~~~~l~~~~-~~p~-~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~ 64 (87)
=-.-|+.|.+.|..+...|........ ..|. .+..-+..+..-.+.+-..|. .|-..|..
T Consensus 33 Ra~iE~eYak~L~kLakk~~~~~~~~~~~~~~~t~~~~w~~~l~~~e~~a~~h~-~~a~~L~~ 94 (301)
T 2efk_A 33 RTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVNDFAGQRE-LVAENLSV 94 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCC-------CTTSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345689999999999888754311000 1111 334567888888888888887 47777743
No 37
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=20.76 E-value=1.8e+02 Score=20.01 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHhHhcCHHHHHHHhHHHHHHHHHh
Q psy17417 4 LLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEK 64 (87)
Q Consensus 4 Li~TE~~Yv~~L~~i~~~~~~~l~~~~~~p~~~~~~~~~lF~ni~~I~~~h~~~fl~~Le~ 64 (87)
=-.-|+.|-+.|..+...|...-.....-...+..-+..+..-.+.+-..|. .+-..|..
T Consensus 38 RA~IE~eYAk~L~kLakk~~~k~~~~~~~~~tl~~aW~~ll~ete~~a~~H~-~lae~L~~ 97 (406)
T 4dyl_A 38 RVKSDREYAGLLHHMSLQDSGGQSRAISPDSPISQSWAEITSQTEGLSRLLR-QHAEDLNS 97 (406)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3456899999999888877653221111112334567888888888888887 46666544
Done!