RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17417
(87 letters)
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 102 bits (256), Expect = 3e-28
Identities = 49/80 (61%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNL-PPGLVGKHDIIFGNIEEIRDFHRDIFL 59
MAEL+QTE+ YV+DL C+ +L E S PPG+V K IIFGN++EI +FH +IFL
Sbjct: 14 MAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFL 73
Query: 60 KELEKYENMPEDLGHCFVTW 79
KELEKYE +PED+GHCFVTW
Sbjct: 74 KELEKYEQLPEDVGHCFVTW 93
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo
sapiens}
Length = 354
Score = 100 bits (250), Expect = 3e-27
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLK 60
++EL++TE+ YV DL ++ ++ + +P L G+ I+FGNI++I ++HRD FL+
Sbjct: 17 LSELVETEKMYVDDLGQIVEGYMATMAA-QGVPESLRGRDRIVFGNIQQIYEWHRDYFLQ 75
Query: 61 ELEKYENMPEDLGHCFVTW 79
EL++ P+ L F+
Sbjct: 76 ELQRCLKDPDWLAQLFIKH 94
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide
exchange factor (GEF), small G-protein, signaling
protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
PDB: 1lb1_A 1kzg_A 1rj2_A
Length = 353
Score = 96.6 bits (240), Expect = 8e-26
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSH---PNLPPGLVGKHDIIFGNIEEIRDFHRDI 57
M ELL TER YV++L ++ + E + + GL K +I+FGN+EEI FH I
Sbjct: 16 MNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRI 75
Query: 58 FLKELEKYENMPEDLGHCFVTW 79
FL+ELE + PE +G CF+
Sbjct: 76 FLRELESCIDCPELVGRCFLER 97
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR
{Homo sapiens} SCOP: a.87.1.1
Length = 209
Score = 90.0 bits (224), Expect = 2e-24
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLK 60
+ +L+TE Y K+L T + +L+ ++ L + + GN+EEI F + ++
Sbjct: 18 LQNILETENEYSKELQTVLSTYLRPLQTSEKLSSANI---SYLMGNLEEICSFQQM-LVQ 73
Query: 61 ELEKYENMPED---LGHCFVTW 79
LE+ +PE +G CF+
Sbjct: 74 SLEECTKLPEAQQRVGGCFLNL 95
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 83.8 bits (207), Expect = 5e-21
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLK 60
+ E++ TER Y+K L + +L++ R ++ + +IFGNIE+I F F++
Sbjct: 46 INEIMSTERHYIKHLKDICEGYLKQCRKRRDMFS--DEQLKVIFGNIEDIYRFQMG-FVR 102
Query: 61 ELEKYENMPED----LGHCFVTW 79
+LEK N + +G CF+
Sbjct: 103 DLEKQYNNDDPHLSEIGPCFLEH 125
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 81.8 bits (202), Expect = 2e-20
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLK 60
+ E+ QTE Y L + + F++ + L P + + IF NIEE+ H FLK
Sbjct: 30 LREIQQTEEKYTDTLGSIQQHFMKPLQRF--LKPQDM---ETIFVNIEELFSVHTH-FLK 83
Query: 61 ELEKYENMPED--LGHCFVTW 79
EL+ P L F+ +
Sbjct: 84 ELKDALAGPGATTLYQVFIKY 104
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1
b.55.1.1 PDB: 1pms_A 1awe_A
Length = 354
Score = 81.1 bits (200), Expect = 4e-20
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPN-LPPGLVGKHDIIFGNIEEIRDFHRDIFL 59
+ + R Y+++L+ IKVF + S+ V + IF I +I + L
Sbjct: 8 VKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDV---ENIFSRIVDIHELSVK-LL 63
Query: 60 KELEKYENMPED------LGHCFVTW 79
+E M ++ +G CF
Sbjct: 64 GHIEDTVEMTDEGSPHPLVGSCFEDL 89
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 78.5 bits (193), Expect = 5e-19
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPN-LPPGLVGKHDIIFGNIEEIRDFHRDIFL 59
+ E+L TER Y+K L + ++++ R + + IFGNIE+I + F+
Sbjct: 123 INEILSTERDYIKHLRDICEGYVRQCRKRADMFSEEQL---RTIFGNIEDIYRCQKA-FV 178
Query: 60 KELEKYENMPED----LGHCFVTW 79
K LE+ N LG CF+
Sbjct: 179 KALEQRFNRERPHLSELGACFLEH 202
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 77.8 bits (191), Expect = 1e-18
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLK 60
+ E+ QTE Y L + + FL+ + L P + +IIF NIE++ H FLK
Sbjct: 202 LREIQQTEEKYTDTLGSIQQHFLKPLQRF--LKPQDI---EIIFINIEDLLRVHTH-FLK 255
Query: 61 ELEKYENMPED--LGHCFVTW 79
E+++ P L F+ +
Sbjct: 256 EMKEALGTPGAANLYQVFIKY 276
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 75.4 bits (185), Expect = 5e-18
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLK 60
+ ELL+TERTYVKDL+ ++ +L+ + L + D++FGN+ E+ +F + FLK
Sbjct: 16 ICELLETERTYVKDLNCLMERYLKPLQKETFLTQDEL---DVLFGNLTEMVEFQVE-FLK 71
Query: 61 ELEKYENMPED----------------LGHCFVTW 79
LE + D LG F+ +
Sbjct: 72 TLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYY 106
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 73.9 bits (181), Expect = 2e-17
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 16/91 (17%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQ---------ESRSHPNLPPGLVGKHDIIFGNIEEIR 51
ELL +E+ YV+ L F + L + + I
Sbjct: 27 AQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAREEL---RQGLSELPAIH 83
Query: 52 DFHRDIFLKELEKYENMPED---LGHCFVTW 79
D H+ L+ELE+ + E + F+
Sbjct: 84 DLHQG-ILEELEERLSNWESQQKVADVFLAR 113
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 70.6 bits (173), Expect = 2e-16
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 10/83 (12%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKEL 62
EL+ TE YV DL ++F + L V +IF N +E+ + LK L
Sbjct: 89 ELIVTEENYVNDLQLVTEIFQKPLTESELLTEKEV---AMIFVNWKELIMCNIK-LLKAL 144
Query: 63 EK-----YENMP-EDLGHCFVTW 79
E MP + +G
Sbjct: 145 RVRKKMSGEKMPVKMIGDILSAQ 167
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 67.9 bits (166), Expect = 2e-15
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKEL 62
EL Q E ++DL K + + + + IFG ++ + H + L +L
Sbjct: 26 ELSQGEEDLIEDLKLAKKAYHDPMLKLSIMTEQEL---NQIFGTLDSLIPLHEE-LLSQL 81
Query: 63 EKY--ENMP-EDLGHCFVTW 79
+ E +G V W
Sbjct: 82 RDVRKPDGSTEHVGPILVGW 101
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 67.7 bits (165), Expect = 3e-15
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKEL 62
EL+QTE Y+ DL ++VF + L G + +IF N +E+ + LK L
Sbjct: 34 ELIQTEERYMADLQLVVEVFQKRMAESGFLTEGEM---ALIFVNWKELIMSNTK-LLKAL 89
Query: 63 EK-----YENMP-EDLGHCFVTW 79
E MP + +G
Sbjct: 90 RVRKKTGGEKMPVQMIGDILAAE 112
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 65.5 bits (159), Expect = 2e-14
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKEL 62
ELL TE +V+ L +F Q P + IF +++E+ + H FL L
Sbjct: 187 ELLVTEAAHVRMLRVLHDLFFQPMAECLFFPLEEL---QNIFPSLDELIEVHSL-FLDRL 242
Query: 63 EK--YENMP--EDLGHCFVTW 79
K E+ E++G +
Sbjct: 243 MKRRQESGYLIEEIGDVLLAR 263
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 64.9 bits (158), Expect = 3e-14
Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKEL 62
EL TE ++++ L +F Q + +P + +F N+ E+ + H + + +
Sbjct: 70 ELFVTEASHLRTLRVLDLIFYQRMKKENLMPR---EELARLFPNLPELIEIHNS-WCEAM 125
Query: 63 EKY-ENMP--EDLGHCFVTW 79
+K E P +++ +
Sbjct: 126 KKLREEGPIIKEISDLMLAR 145
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 64.5 bits (157), Expect = 4e-14
Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKEL 62
EL TE ++++ L +F Q + +P + +F N+ E+ + H + + +
Sbjct: 28 ELFVTEASHLRTLRVLDLIFYQRMKKENLMPR---EELARLFPNLPELIEIHNS-WCEAM 83
Query: 63 EKY-ENMP--EDLGHCFVTW 79
+K E P +++ +
Sbjct: 84 KKLREEGPIIKEISDLMLAR 103
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 63.7 bits (155), Expect = 8e-14
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKEL 62
EL TER +V+ L +VF Q L P + IF N+E+I H +++
Sbjct: 31 ELFYTERAHVRTLKVLDQVFYQRVSREGILSPSEL---RKIFSNLEDILQLHIG-LNEQM 86
Query: 63 EKYENMPE-----DLGHCFVTW 79
+ E +G +TW
Sbjct: 87 KAVRKRNETSVIDQIGEDLLTW 108
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 62.6 bits (152), Expect = 2e-13
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKEL 62
ELL TE +V+ L +F Q P + IF +++E+ + H FL L
Sbjct: 34 ELLVTEAAHVRMLRVLHDLFFQPMAECLFFPLEEL---QNIFPSLDELIEVHSL-FLDRL 89
Query: 63 E---KYENMP-EDLGHCFVTW 79
+ E++G +
Sbjct: 90 MKRRQESGYLIEEIGDVLLAR 110
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 57.5 bits (138), Expect = 1e-11
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKEL 62
+ R Y+++L+ IKVF + S+ L + IF I +I + L +
Sbjct: 207 AFMAEIRQYIRELNLIIKVFREPFVSNSKLFS--ANDVENIFSRIVDIHELSV-KLLGHI 263
Query: 63 E-KYENMPED-----LGHCF 76
E E E +G CF
Sbjct: 264 EDTVEMTDEGSPHPLVGSCF 283
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.002
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 11/41 (26%)
Query: 8 ERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIE 48
E+ +K L +K++ + P L I +E
Sbjct: 18 EKQALKKLQASLKLY------ADDSAPALA-----IKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.061
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 19/82 (23%)
Query: 1 MAELLQTERTYVKDL-DTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFL 59
+ +L QT V DL + + R+ + +F I ++
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK--------VFTQGLNILEW------ 218
Query: 60 KELEKYENMPED--LGHCFVTW 79
LE N P+ L ++
Sbjct: 219 --LENPSNTPDKDYLLSIPISC 238
Score = 24.2 bits (52), Expect = 7.2
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 23/82 (28%)
Query: 7 TERTYVKDLDTCIKV-FL-----QESRSHPNLPPGLVGKHDIIFGNIEE------IRDFH 54
+ ++ + I V F E+ + +LPP ++ D + N I +
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL--EDSLENNEGVPSPMLSISNLT 345
Query: 55 RDIFLKELEKY-----ENMPED 71
+ ++++ Y ++P
Sbjct: 346 Q----EQVQDYVNKTNSHLPAG 363
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis,
NADH binding specificity, TB structural genomics
consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium
tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A
1yl7_A* 1yl6_A*
Length = 245
Score = 27.9 bits (63), Expect = 0.29
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 5/30 (16%)
Query: 34 PGLVGKHDIIFGNIEEI-----RDFHRDIF 58
GLV +++FG E R F
Sbjct: 188 AGLVAHQEVLFGTEGETLTIRHDSLDRTSF 217
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B*
1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Length = 352
Score = 26.5 bits (59), Expect = 1.00
Identities = 7/62 (11%), Positives = 12/62 (19%), Gaps = 14/62 (22%)
Query: 13 KDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENMPEDL 72
DL + L + P E+ + + E P
Sbjct: 80 DDLPYYVNA-LADVLYKTAFKP-------------HELTESVLPAARYDYAVAEQCPVKS 125
Query: 73 GH 74
Sbjct: 126 AE 127
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 26.4 bits (59), Expect = 1.1
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 19/52 (36%)
Query: 38 GKHDIIFGNIEEIRDF-------HR------------DIFLKELEKYENMPE 70
G H I+ N++EI F HR D++L +EK ++ P
Sbjct: 210 GTHRQIYRNLQEINTFIGQSVEKHRATLDPSNPRDFIDVYLLRMEKDKSDPS 261
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate
conformation, signaling protein,transferase; HET: ACP;
1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A*
2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A*
1lik_A*
Length = 383
Score = 26.2 bits (58), Expect = 1.2
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 36 LVGKHDIIFGNIEEIRDF 53
L+ +I+FGN EE
Sbjct: 233 LLLHTNILFGNEEEFAHL 250
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 26.4 bits (59), Expect = 1.3
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 19/52 (36%)
Query: 38 GKHDIIFGNIEEIRDF-------HR------------DIFLKELEKYENMPE 70
G F ++ + DF ++ D FL +++ E P
Sbjct: 210 GPQQQAFQLLQGLEDFIAKKVEHNQRTLDPNSPRDFIDSFLIRMQEEEKNPN 261
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 26.4 bits (59), Expect = 1.4
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 22/58 (37%)
Query: 32 LPPGLVGKHDIIFGNIEEIRDF-------HR------------DIFLKELEKYENMPE 70
LP G KH +F N + DF D +L E+++ +N P
Sbjct: 212 LPFG---KHQQLFRNAAVVYDFLSRLIEKASVNRKPQLPQHFVDAYLDEMDQGKNDPS 266
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 26.3 bits (59), Expect = 1.4
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 19/52 (36%)
Query: 38 GKHDIIFGNIEEIRDF-------HR------------DIFLKELEKYENMPE 70
G H + N+ E++++ H D L E+EK ++ E
Sbjct: 209 GSHRKVIKNVAEVKEYVSERVKEHHQSLDPNCPRDLTDCLLVEMEKEKHSAE 260
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 26.0 bits (58), Expect = 1.7
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 19/52 (36%)
Query: 38 GKHDIIFGNIEEIRDF-------HR------------DIFLKELEKYENMPE 70
G H+ + N+ ++ + H+ D FL ++EK ++
Sbjct: 211 GTHNKLLKNVAFMKSYILEKVKEHQESMDMNNPQDFIDCFLMKMEKEKHNQP 262
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase;
HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB:
2i6a_A* 2i6b_A*
Length = 345
Score = 25.7 bits (57), Expect = 2.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 36 LVGKHDIIFGNIEEIRDF 53
++ DI+FGN E F
Sbjct: 213 VMPYVDILFGNETEAATF 230
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor
CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*
Length = 347
Score = 25.8 bits (57), Expect = 2.1
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 36 LVGKHDIIFGNIEEIRDF 53
++ DII N E ++F
Sbjct: 214 VLPYTDIIVANRHEAKEF 231
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 25.3 bits (56), Expect = 2.6
Identities = 8/27 (29%), Positives = 9/27 (33%), Gaps = 5/27 (18%)
Query: 37 VGKHDIIFGNIEEI-----RDFHRDIF 58
+G H I F E R IF
Sbjct: 233 IGDHSITFAGENERIVLSHIAQERSIF 259
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 25.2 bits (56), Expect = 2.9
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 20/53 (37%)
Query: 38 GKHDIIFGNIEEIRDF-------HR-------------DIFLKELEKYENMPE 70
+ + HR + FL E+EK + PE
Sbjct: 213 ALAGKVLRFQKAFLTQLDELLTEHRMTWDPAQPPRDLTEAFLAEMEKAKGNPE 265
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 25.2 bits (56), Expect = 3.0
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 5/27 (18%)
Query: 37 VGKHDIIFGNIEEI-----RDFHRDIF 58
VG H ++F I E + R +
Sbjct: 218 VGDHTVLFAGIGERIEITHKSASRVSY 244
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A
{Mycobacterium smegmatis}
Length = 1113
Score = 25.2 bits (56), Expect = 3.5
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 16/59 (27%)
Query: 38 GKHDIIFGNIEEIRDFHRDIFLKELEKYENMPEDLGHCFVTW----------WWFVRPK 86
+ D+ IE++ R + L++Y N+ E W W
Sbjct: 1017 NREDVAIVRIEQLAPLPRRRLAETLDRYPNVKE------KFWVQEEPANQGAWPSFGLT 1069
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 24.9 bits (55), Expect = 3.6
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 5/27 (18%)
Query: 37 VGKHDIIFGNIEEI-----RDFHRDIF 58
VG+H +F +I E + R F
Sbjct: 217 VGEHTAMFADIGERLEITHKASSRMTF 243
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase,
isoform A, structural genomics, structural genomics
consortium, SGC transferase; 1.85A {Homo sapiens} PDB:
2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A*
3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Length = 312
Score = 24.9 bits (55), Expect = 3.8
Identities = 6/51 (11%), Positives = 12/51 (23%)
Query: 29 HPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYENMPEDLGHCFVTW 79
L G D++F + + + + L W
Sbjct: 189 PREELFQLFGYGDVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAW 239
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein,
oxidoreductase, thiamine diphosphate, thiamine
pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A
{Escherichia coli} PDB: 2jgd_B*
Length = 933
Score = 24.9 bits (55), Expect = 3.9
Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 16/59 (27%)
Query: 38 GKHDIIFGNIEEIRDFHRDIFLKELEKYENMPEDLGHCFVTW----------WWFVRPK 86
+HD+ IE++ F + L+++ ++ + W W+ +
Sbjct: 836 NQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKD------FVWCQEEPLNQGAWYCSQHH 888
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi
tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles
gambiae}
Length = 365
Score = 25.0 bits (55), Expect = 4.0
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 36 LVGKHDIIFGNIEEIRDF 53
+ D++FGN E
Sbjct: 228 IFPYVDVLFGNETEAIAL 245
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 24.6 bits (54), Expect = 5.4
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 20 KVFLQESRSHPNLPPGLVGKHDIIFGNIEEI-RDFHRDIFLKEL-EKY 65
V N PP G + G+ E +D + FL + EK+
Sbjct: 7 SVLYGRRTRRRNEPPLDKGMIPWL-GHALEFGKDAAK--FLTRMKEKH 51
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium
smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Length = 868
Score = 24.4 bits (54), Expect = 5.4
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 16/58 (27%)
Query: 38 GKHDIIFGNIEEIRDFHRDIFLKELEKYENMPEDLGHCFVTW----------WWFVRP 85
+ D+ IE++ R + L++Y N+ E W W
Sbjct: 772 NREDVAIVRIEQLAPLPRRRLAETLDRYPNVKE------KFWVQEEPANQGAWPSFGL 823
>4e3a_A Sugar kinase protein; structural genomics, protein structure
initiative, nysgrc, S kinase, PSI-biology; HET: ADN;
1.63A {Rhizobium etli} PDB: 3ubo_A*
Length = 352
Score = 24.6 bits (54), Expect = 6.0
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 38 GKHDIIFGNIEEIRDF 53
GK DI+F N +E
Sbjct: 229 GKVDIVFANRQEALSL 244
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 24.4 bits (53), Expect = 6.3
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 22 FLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKELEKYEN 67
F Q+ + ++FG + D I+ +E + +N
Sbjct: 518 FWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDH---IYREETLQAKN 560
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase,
DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x
populus alba} PDB: 3n0g_A*
Length = 555
Score = 24.4 bits (52), Expect = 6.7
Identities = 6/41 (14%), Positives = 21/41 (51%)
Query: 43 IFGNIEEIRDFHRDIFLKELEKYENMPEDLGHCFVTWWWFV 83
++G ++E+ F + ++ ++P+ + CF+ + +
Sbjct: 310 VYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTI 350
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics,
protein structure initiative, PSI, joint center for
structu genomics; HET: NAD PG4; 2.27A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.3
Length = 228
Score = 24.1 bits (53), Expect = 7.1
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 5/27 (18%)
Query: 37 VGKHDIIFGNIEEI-----RDFHRDIF 58
G H ++FGNI E R R +F
Sbjct: 173 PGDHVVVFGNIGETIEIKHRAISRTVF 199
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH,
oxidoreductase; 1.80A {Staphylococcus aureus}
Length = 243
Score = 24.1 bits (53), Expect = 7.2
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 5/27 (18%)
Query: 37 VGKHDIIF-GNIEEIRDFH----RDIF 58
VG+H+++F G E I+ H +DIF
Sbjct: 193 VGEHEVLFAGTDETIQITHRAQSKDIF 219
>1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
b.30.5.6
Length = 282
Score = 23.9 bits (51), Expect = 8.7
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKEL 62
EL+ R D + E + + G+H ++ E HR E+
Sbjct: 208 ELMVHRRLLKDDARG-----VGEPLNKEGSGLWVRGRHLVLLDKKETAAARHRLQAEMEV 262
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 24.0 bits (53), Expect = 9.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 55 RDIFLKELEKYENMP 69
++ LKEL +YE +P
Sbjct: 27 KETALKELNRYEKIP 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.143 0.473
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,503,394
Number of extensions: 81551
Number of successful extensions: 287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 61
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)