RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17417
(87 letters)
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 79.4 bits (195), Expect = 6e-21
Identities = 48/80 (60%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQE-SRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFL 59
MAEL+QTE+ YV+DL C+ +L E + +PPG+V K IIFGN++EI +FH +IFL
Sbjct: 8 MAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFL 67
Query: 60 KELEKYENMPEDLGHCFVTW 79
KELEKYE +PED+GHCFVTW
Sbjct: 68 KELEKYEQLPEDVGHCFVTW 87
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 195
Score = 70.9 bits (173), Expect = 2e-17
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSH---PNLPPGLVGKHDIIFGNIEEIRDFHRDI 57
M ELL TER YV++L ++ + E + + GL K +I+FGN+EEI FH I
Sbjct: 14 MNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRI 73
Query: 58 FLKELEKYENMPEDLGHCFVTWWWFVRP 85
FL+ELE + PE +G CF+ +
Sbjct: 74 FLRELESCIDCPELVGRCFLERMEEFQI 101
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId:
9606]}
Length = 209
Score = 68.2 bits (166), Expect = 2e-16
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLK 60
+ +L+TE Y K+L T + +L+ ++ L + + GN+EEI F + ++
Sbjct: 18 LQNILETENEYSKELQTVLSTYLRPLQTSEKLSSANI---SYLMGNLEEICSFQQM-LVQ 73
Query: 61 ELEKYENMPED---LGHCFVTW 79
LE+ +PE +G CF+
Sbjct: 74 SLEECTKLPEAQQRVGGCFLNL 95
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion
and metastasis inducing protein 1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 206
Score = 65.2 bits (158), Expect = 3e-15
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLK 60
+ ELL+TERTYVKDL+ ++ +L+ + L + D++FGN+ E+ +F + FLK
Sbjct: 12 ICELLETERTYVKDLNCLMERYLKPLQKETFLTQ---DELDVLFGNLTEMVEFQVE-FLK 67
Query: 61 ELEKYENMPEDLGHCFVTWWW 81
LE + DL +
Sbjct: 68 TLEDGVRLVPDLEKLEKVDQF 88
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 203
Score = 62.8 bits (152), Expect = 2e-14
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLK 60
+ E++ TER Y+K L + +L++ R ++ + +IFGNIE+I F F++
Sbjct: 19 INEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSD--EQLKVIFGNIEDIYRFQMG-FVR 75
Query: 61 ELEKYENMPE----DLGHCFVTWWWFVRP 85
+LEK N + ++G CF+
Sbjct: 76 DLEKQYNNDDPHLSEIGPCFLEHQDGFWI 104
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 58.2 bits (140), Expect = 1e-12
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLK 60
+ EL+ TE YV DL ++F + L V +IF N +E+ + LK
Sbjct: 14 IHELIVTEENYVNDLQLVTEIFQKPLMESELLTEKEV---AMIFVNWKELIMCNIK-LLK 69
Query: 61 ELEK------YENMPEDLGHCFVTW 79
L + + +G
Sbjct: 70 ALRVRKKMSGEKMPVKMIGDILSAQ 94
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor
11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 58.3 bits (140), Expect = 2e-12
Identities = 14/84 (16%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIF-- 58
+ EL TE ++++ L +F Q + +P + +F N+ E+ + H
Sbjct: 26 INELFVTEASHLRTLRVLDLIFYQRMKKENLMPR---EELARLFPNLPELIEIHNSWCEA 82
Query: 59 LKELEKYENMPEDLGHCFVTWWWF 82
+K+L + + +++ + +
Sbjct: 83 MKKLREEGPIIKEISDLMLARFDG 106
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 57.1 bits (137), Expect = 3e-12
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 3 ELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLKEL 62
+ R Y+++L+ IKVF + S+ L + IF I +I + L +
Sbjct: 10 AFMAEIRQYIRELNLIIKVFREPFVSNSKLFS--ANDVENIFSRIVDIHELSVK-LLGHI 66
Query: 63 EKYENMPED------LGHCFVTW 79
E M ++ +G CF
Sbjct: 67 EDTVEMTDEGSPHPLVGSCFEDL 89
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor
12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Length = 234
Score = 56.4 bits (135), Expect = 7e-12
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLK 60
+ EL TER +V+ L +VF Q L P + IF N+E+I H +
Sbjct: 27 INELFYTERAHVRTLKVLDQVFYQRVSREGILSPSEL---RKIFSNLEDILQLHIG-LNE 82
Query: 61 ELEKYENMPE-----DLGHCFVTW 79
+++ E +G +TW
Sbjct: 83 QMKAVRKRNETSVIDQIGEDLLTW 106
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 55.9 bits (134), Expect = 8e-12
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRDIFLK 60
+ E+ QTE Y L + + F++ + L P + + IF NIEE+ H FLK
Sbjct: 32 LREIQQTEEKYTDTLGSIQQHFMKPLQRF--LKPQDM---ETIFVNIEELFSVHTH-FLK 85
Query: 61 ELEKYENMP--EDLGHCFVTW 79
EL+ P L F+ +
Sbjct: 86 ELKDALAGPGATTLYQVFIKY 106
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine
phosphatase 2C, C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 72
Score = 25.0 bits (55), Expect = 0.58
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 1 MAELLQTERTYVKDLDTCIKVFLQESRSHPNLPPG--LVGKHDII 43
+ E+++ + V DL ++ E+ P+LPPG L K ++I
Sbjct: 20 VEEIIKKQGEGVPDLVHVMRTLASENI--PSLPPGGELASKRNVI 62
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase
AadK {Bacillus subtilis [TaxId: 1423]}
Length = 135
Score = 25.2 bits (55), Expect = 0.83
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 21 VFLQESRSHPNLPPGLVGKHDIIFGNIEEIRDFHRD----------IFLKELEKYENMPE 70
V L+ SR++ N+PP +DI + + ++ F + I +++ E E P
Sbjct: 24 VTLEGSRTNRNIPPDNFQDYDISYF-VTDVESFKENDQWLEIFGKRIMMQKPEDMELFPP 82
Query: 71 DLGHCF 76
+LG+ F
Sbjct: 83 ELGNWF 88
>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated
protein 28, VPS28 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 104
Score = 24.4 bits (53), Expect = 1.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 48 EEIRDFHRDIFLKELEKYENMPE 70
+E+ F I K+ E E + E
Sbjct: 6 DEVPLFDNSITSKDKEVIETLSE 28
>d1yl7a2 d.81.1.3 (A:106-214) Dihydrodipicolinate reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 109
Score = 23.8 bits (51), Expect = 2.3
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 34 PGLVGKHDIIFGNIEEI 50
GLV +++FG E
Sbjct: 83 AGLVAHQEVLFGTEGET 99
>d1vm6a2 d.81.1.3 (A:97-182) Dihydrodipicolinate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 86
Score = 22.9 bits (49), Expect = 4.8
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 34 PGLVGKHDIIFGNIEEIRDF-HRDI 57
G+ G H ++FGNI E + HR I
Sbjct: 62 GGVPGDHVVVFGNIGETIEIKHRAI 86
>d1c5aa_ a.50.1.1 (A:) C5a anaphylotoxin {Pig (Sus scrofa
domestica) [TaxId: 9823]}
Length = 66
Score = 22.1 bits (47), Expect = 6.6
Identities = 6/18 (33%), Positives = 8/18 (44%), Gaps = 1/18 (5%)
Query: 8 ERT-YVKDLDTCIKVFLQ 24
ER +K C+K F
Sbjct: 36 ERAARIKIGPKCVKAFKD 53
>d1j77a_ a.132.1.2 (A:) Heme oxygenase HemO (PigA) {Neisseria
meningitidis [TaxId: 487]}
Length = 200
Score = 22.7 bits (48), Expect = 7.1
Identities = 5/39 (12%), Positives = 15/39 (38%)
Query: 47 IEEIRDFHRDIFLKELEKYENMPEDLGHCFVTWWWFVRP 85
++ L+ + +Y+ + +DL + F +
Sbjct: 53 YKDAELNKAIPELEYMARYDAVTQDLKDLGEEPYKFDKE 91
>d1kjsa_ a.50.1.1 (A:) C5a anaphylotoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 74
Score = 22.1 bits (47), Expect = 7.5
Identities = 5/18 (27%), Positives = 8/18 (44%), Gaps = 1/18 (5%)
Query: 8 ERT-YVKDLDTCIKVFLQ 24
+R + CIK F +
Sbjct: 36 QRAARISLGPRCIKAFTE 53
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 312
Score = 22.7 bits (48), Expect = 7.8
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 36 LVGKHDIIFGNIEEIRDF-----HRDIFLKELEKYENMPEDLGHCFVTWWWFVRPK 86
L G+ ++G+ + R F + + + + P +LG+
Sbjct: 195 LQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQL 250
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.143 0.473
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 433,863
Number of extensions: 18130
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 35
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)