Query psy17420
Match_columns 209
No_of_seqs 187 out of 705
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 22:01:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2016|consensus 100.0 8.1E-36 1.8E-40 271.3 14.4 161 1-209 337-498 (523)
2 KOG2012|consensus 99.8 2.8E-20 6.1E-25 179.7 8.9 134 65-209 231-375 (1013)
3 cd01493 APPBP1_RUB Ubiquitin a 99.8 7.8E-19 1.7E-23 162.6 7.3 51 1-51 330-380 (425)
4 TIGR01408 Ube1 ubiquitin-activ 99.7 1.2E-16 2.5E-21 160.8 10.3 134 65-209 220-365 (1008)
5 KOG2014|consensus 99.6 5.1E-16 1.1E-20 136.7 8.4 143 36-209 138-303 (331)
6 cd01491 Ube1_repeat1 Ubiquitin 97.3 0.00012 2.6E-09 65.1 2.1 20 190-209 244-263 (286)
7 KOG2016|consensus 96.3 0.0004 8.7E-09 64.9 -2.5 27 51-77 15-41 (523)
8 cd01493 APPBP1_RUB Ubiquitin a 94.2 0.19 4.1E-06 47.1 7.7 87 123-209 287-402 (425)
9 PF05237 MoeZ_MoeB: MoeZ/MoeB 90.6 0.17 3.6E-06 36.7 1.8 22 188-209 24-45 (84)
10 PF02134 UBACT: Repeat in ubiq 89.7 1.5 3.2E-05 30.5 6.0 58 151-209 7-64 (67)
11 cd01492 Aos1_SUMO Ubiquitin ac 86.3 0.49 1.1E-05 39.6 2.1 26 53-78 11-36 (197)
12 TIGR02356 adenyl_thiF thiazole 79.4 1.8 3.9E-05 36.2 2.9 24 186-209 179-202 (202)
13 cd01485 E1-1_like Ubiquitin ac 77.4 1.7 3.6E-05 36.3 2.1 26 53-78 9-34 (198)
14 PRK08328 hypothetical protein; 75.8 2 4.4E-05 36.7 2.2 40 30-77 2-41 (231)
15 PRK05690 molybdopterin biosynt 72.6 3 6.4E-05 36.0 2.5 43 29-77 4-46 (245)
16 TIGR02355 moeB molybdopterin s 72.6 2.9 6.4E-05 36.0 2.5 23 187-209 183-205 (240)
17 cd00757 ThiF_MoeB_HesA_family 70.6 3.5 7.6E-05 34.9 2.5 24 186-209 179-202 (228)
18 PRK08644 thiamine biosynthesis 63.5 5.8 0.00013 33.5 2.4 23 187-209 184-206 (212)
19 PRK08762 molybdopterin biosynt 61.5 6.3 0.00014 36.0 2.4 44 28-77 106-149 (376)
20 PRK05597 molybdopterin biosynt 61.4 6.4 0.00014 35.9 2.5 27 52-78 17-43 (355)
21 PRK07878 molybdopterin biosynt 60.4 6.8 0.00015 36.2 2.5 47 26-78 11-57 (392)
22 KOG2013|consensus 60.2 24 0.00051 34.2 6.0 38 6-46 226-263 (603)
23 PRK07688 thiamine/molybdopteri 56.6 9.1 0.0002 34.8 2.6 23 187-209 184-206 (339)
24 PRK07411 hypothetical protein; 56.5 8.9 0.00019 35.4 2.5 46 27-78 8-53 (390)
25 PRK05600 thiamine biosynthesis 54.1 9.9 0.00021 35.0 2.4 44 28-77 12-55 (370)
26 PTZ00245 ubiquitin activating 53.4 2 4.2E-05 38.3 -2.2 40 31-78 2-41 (287)
27 COG3492 Uncharacterized protei 52.1 31 0.00067 25.9 4.3 37 5-43 12-48 (104)
28 cd01488 Uba3_RUB Ubiquitin act 50.6 66 0.0014 28.7 7.0 62 147-209 194-255 (291)
29 KOG4479|consensus 49.3 26 0.00057 25.8 3.5 33 7-45 15-47 (92)
30 cd01489 Uba2_SUMO Ubiquitin ac 49.0 1E+02 0.0023 27.7 8.1 58 151-209 217-274 (312)
31 PRK08223 hypothetical protein; 45.7 15 0.00032 32.9 2.1 20 190-209 218-237 (287)
32 PF10498 IFT57: Intra-flagella 45.6 1.3E+02 0.0029 27.7 8.4 73 125-206 43-115 (359)
33 COG3259 FrhA Coenzyme F420-red 44.6 16 0.00034 34.6 2.2 64 122-201 104-168 (441)
34 PF13884 Peptidase_S74: Chaper 40.8 7.8 0.00017 25.7 -0.3 10 199-208 46-55 (58)
35 PRK12475 thiamine/molybdopteri 38.7 26 0.00056 31.8 2.6 23 187-209 184-206 (338)
36 PF11360 DUF3110: Protein of u 38.5 33 0.00071 25.2 2.6 42 6-51 32-76 (86)
37 cd01490 Ube1_repeat2 Ubiquitin 37.8 3.6E+02 0.0078 25.6 10.6 41 168-209 301-341 (435)
38 cd06113 citrate_synt_like_1_2 32.7 3.3E+02 0.0072 25.4 9.0 51 139-203 69-119 (406)
39 KOG1597|consensus 30.5 49 0.0011 29.9 2.9 40 5-44 174-216 (308)
40 cd01492 Aos1_SUMO Ubiquitin ac 28.1 5 0.00011 33.5 -3.6 20 190-209 155-174 (197)
41 PRK05690 molybdopterin biosynt 27.5 7.8 0.00017 33.4 -2.6 23 187-209 191-213 (245)
42 PF04930 FUN14: FUN14 family; 27.4 2.5E+02 0.0055 20.6 6.3 51 151-201 44-96 (100)
43 PRK07411 hypothetical protein; 27.0 11 0.00025 34.7 -1.7 23 187-209 198-220 (390)
44 PF03792 PBC: PBC domain; Int 26.5 1.1E+02 0.0025 25.8 4.2 40 3-43 125-164 (191)
45 KOG1373|consensus 24.6 2.7E+02 0.0058 26.4 6.6 77 110-201 349-427 (476)
46 TIGR01408 Ube1 ubiquitin-activ 23.8 1.4E+02 0.003 31.4 5.2 37 6-42 306-342 (1008)
47 cd06107 EcCS_AthCS-per_like Es 23.0 5.6E+02 0.012 23.8 8.6 68 112-202 36-103 (382)
48 TIGR02354 thiF_fam2 thiamine b 22.6 84 0.0018 26.2 2.9 24 186-209 177-200 (200)
49 PRK14032 citrate synthase; Pro 20.9 2.8E+02 0.0061 26.4 6.2 51 139-203 99-149 (447)
50 PF07970 COPIIcoated_ERV: Endo 20.8 36 0.00079 28.9 0.3 14 189-202 203-216 (222)
51 TIGR01592 holin_SPP1 holin, SP 20.8 1.9E+02 0.004 20.8 3.9 30 11-40 12-41 (75)
52 PF09373 PMBR: Pseudomurein-bi 20.1 1.2E+02 0.0026 17.9 2.4 15 131-145 16-30 (33)
No 1
>KOG2016|consensus
Probab=100.00 E-value=8.1e-36 Score=271.27 Aligned_cols=161 Identities=42% Similarity=0.698 Sum_probs=146.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhhccCceeeecccCCCcchhhHHHHHHHhhhcCCCCCcCCC
Q psy17420 1 YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTECGP 80 (209)
Q Consensus 1 y~~KA~~D~~~v~~~v~~~~~~~g~~~~~I~~~~I~~FCKNa~~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (209)
|++||..|+.+|.++|+++|+++|+++++|+++.|++|||||++|+|+||+
T Consensus 337 Y~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~----------------------------- 387 (523)
T KOG2016|consen 337 YHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGR----------------------------- 387 (523)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecc-----------------------------
Confidence 899999999999999999999999999999999999999999999999999
Q ss_pred CCccCcccccccccCCCCccccCCCCCChhhHHHHHhCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHH
Q psy17420 81 VNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSC 160 (209)
Q Consensus 81 ~~f~~~~~~~~~~~~~~~~~~~~p~~~~f~sL~~~l~~p~s~~~~y~~l~Al~~F~~~~gr~Pg~~~~~~~~D~~~l~~i 160 (209)
.+++||.| .+.-.....+.+++...+.+|++|||+++|..++|++|| +..+++|+..++++
T Consensus 388 ----------------~~~eey~~-s~~~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG--~~~v~~D~~~lks~ 448 (523)
T KOG2016|consen 388 ----------------TLAEEYEK-SITELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPG--EGPVEIDITKLKSI 448 (523)
T ss_pred ----------------hhhhhhcc-cchhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCC--CCccchhhHHHHHH
Confidence 78899984 233233333455667789999999999999999999999 46678999999999
Q ss_pred HHHHHHhhCCCC-CChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 161 ISKLTAEWGCGV-LSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 161 ~~~i~~~~~~~~-~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
+..++.++|.++ .+.+++++||||++++|+|.|+||+||+|||||||+|
T Consensus 449 a~~~lse~g~~~~~v~d~~i~E~cR~gaaElH~VsAfiGGiaaQEvIKLi 498 (523)
T KOG2016|consen 449 AASLLSELGLDGNAVTDDAIHEICRFGAAELHVVSAFIGGIAAQEVIKLI 498 (523)
T ss_pred HHHHHHHhccCcccCcHHHHHHHHhcCCchhHHHHHHHhhHHHHHHHHHH
Confidence 999999999986 5999999999999999999999999999999999985
No 2
>KOG2012|consensus
Probab=99.82 E-value=2.8e-20 Score=179.70 Aligned_cols=134 Identities=20% Similarity=0.309 Sum_probs=117.8
Q ss_pred HHHhhhcCCCCCcCCCCCccCcccccccccCCCC-ccccCCCCCChhhHHHHHhCCCc----------hHHHHHHHHHHH
Q psy17420 65 RICLINATGLGTECGPVNFCPVEGLLLSSISSGI-ADEYDPRTSNARQISEALENGDG----------LLIYHVMLRGVD 133 (209)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~p~~~~f~sL~~~l~~p~s----------~~~~y~~l~Al~ 133 (209)
.|-|++||+|+|.= ++.|.++.- . |+ .+...|++++|++|+++|.+|+. ++.+|++|+||+
T Consensus 231 kI~v~~p~sf~Igd-t~~f~~y~~-----G--Gi~tQVK~Pk~isfKsL~~~L~~P~fl~~df~k~~rp~~lH~af~AL~ 302 (1013)
T KOG2012|consen 231 KITVLGPYSFSIGD-TTEFGEYKK-----G--GIFTQVKVPKTISFKSLREALKEPEFLISDFAKFDRPPQLHLAFQALH 302 (1013)
T ss_pred EEEEecCceEEecc-ccchhhhhc-----C--ceeEEeecCceEecccHHHhhcCCCeeeeccccccccHHHHHHHHHHH
Confidence 36677888888866 777777652 0 33 34566999999999999999963 888999999999
Q ss_pred HHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 134 KFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 134 ~F~~~~gr~Pg~~~~~~~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
+|.++|||.|.+++ ++|+++|.+++.++....+...+++++++++++..+.|.|.||+|++||+|||||+|++
T Consensus 303 ~F~~~~Gr~P~p~~---e~DA~~l~~l~~~i~~~~~~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~ 375 (1013)
T KOG2012|consen 303 QFQEAHGRLPRPGN---EEDAEELVELARDISEGLGLEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKAC 375 (1013)
T ss_pred HHHHHhCCCCCCCC---hhhHHHHHHHHHHhhhhccccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhh
Confidence 99999999999999 99999999999999998886677999999999999999999999999999999999975
No 3
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.76 E-value=7.8e-19 Score=162.57 Aligned_cols=51 Identities=39% Similarity=0.848 Sum_probs=50.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhhccCceeeecc
Q psy17420 1 YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGT 51 (209)
Q Consensus 1 y~~KA~~D~~~v~~~v~~~~~~~g~~~~~I~~~~I~~FCKNa~~L~vi~~~ 51 (209)
||+||++|+++|+++|+++++++|++.+.||+++|+.||||+++|++++|+
T Consensus 330 Y~~ka~~D~~~v~~~v~~~~~~~g~~~~~I~~~~i~~FCkna~~l~~i~~~ 380 (425)
T cd01493 330 YREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLFCKNAAFLRVIRGR 380 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhhHHhhhcccCC
Confidence 899999999999999999999999999999999999999999999999999
No 4
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.68 E-value=1.2e-16 Score=160.82 Aligned_cols=134 Identities=19% Similarity=0.256 Sum_probs=112.3
Q ss_pred HHHhhhcCCCCCcCCCCCccCcccccccccCCCCc-cccCCCCCChhhHHHHHhCCC----------chHHHHHHHHHHH
Q psy17420 65 RICLINATGLGTECGPVNFCPVEGLLLSSISSGIA-DEYDPRTSNARQISEALENGD----------GLLIYHVMLRGVD 133 (209)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~p~~~~f~sL~~~l~~p~----------s~~~~y~~l~Al~ 133 (209)
.|.+++|+.|.+. -++.|.++.. . |+. +...|.+..|++|++++.+|+ .+.++|++|+||+
T Consensus 220 ~i~~~~~~~f~i~-dt~~~~~y~~-----g--G~~~qvK~p~~~~Fksl~~~l~~p~~~~~d~~k~~r~~~lh~~~~aL~ 291 (1008)
T TIGR01408 220 KITVISPYSFSIG-DTTELGPYLH-----G--GIATQVKTPKTVFFKSLREQLKDPKCLIVDFSKPERPPEIHTAFQALD 291 (1008)
T ss_pred eEEecCCceEEec-cccccchhhc-----C--ceEEEEeccccccccCHHHHHcCCcccccchhhcCCchhHHHHHHHHH
Confidence 4667778888775 5556777541 0 222 344577889999999999983 2567999999999
Q ss_pred HHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHHhhCCCCC-ChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 134 KFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVL-SKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 134 ~F~~~~gr~Pg~~~~~~~~D~~~l~~i~~~i~~~~~~~~~-i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
+|.++|||+|.+++ ++|++++.++++++.++.+...+ +++++++.+++++.++++|+||++||++||||||++
T Consensus 292 ~f~~~~g~~P~~~~---~~d~~~~~~~a~~i~~~~~~~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKai 365 (1008)
T TIGR01408 292 QFQEKYSRKPNVGC---QQDAEELLKLATSISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAV 365 (1008)
T ss_pred HHHHHcCCCCCCCC---HHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHh
Confidence 99999999999988 99999999999999998776544 999999999999999999999999999999999975
No 5
>KOG2014|consensus
Probab=99.64 E-value=5.1e-16 Score=136.68 Aligned_cols=143 Identities=26% Similarity=0.283 Sum_probs=110.1
Q ss_pred HHHHhhccCceeeecccCCCcchhhHHHHHHHhhhcCCCCCcCCCCCccCcccccccccCCC----------Ccc----c
Q psy17420 36 KLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTECGPVNFCPVEGLLLSSISSG----------IAD----E 101 (209)
Q Consensus 36 ~~FCKNa~~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~----------~~~----~ 101 (209)
..-|++.+ ++.+-|..||++| -.|++|+.|.+--.-.+ ..+ +
T Consensus 138 n~icrk~~-i~F~a~d~~g~~G-----------------------y~F~dL~~h~y~~~~~~~~~~~~~k~~k~~~~~~~ 193 (331)
T KOG2014|consen 138 NEICRKLN-IAFYAGDCFGLCG-----------------------YAFADLQEHKYLEEKTKVAKVSQTKRAKVDETETE 193 (331)
T ss_pred HHHHHhcC-ceEEeccccceee-----------------------eeeeehhhhhhhhhcccccccccccceeeeeccce
Confidence 44566555 7777888899987 56889988877422000 001 1
Q ss_pred cCCCCCChhhHHHHHhCCCc---------hHHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHHhhCCCC
Q psy17420 102 YDPRTSNARQISEALENGDG---------LLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGV 172 (209)
Q Consensus 102 ~~p~~~~f~sL~~~l~~p~s---------~~~~y~~l~Al~~F~~~~gr~Pg~~~~~~~~D~~~l~~i~~~i~~~~~~~~ 172 (209)
+-.....|.++.++++.++. ..+.|++|+++..|.+.+||.||. ..++|.+.+..|.++++...+
T Consensus 194 ~vk~~~~~~~~~Eal~~~~~~k~k~~~rr~~~~~~ll~v~l~f~~s~~r~pg~---~~~~d~erl~~I~~ell~s~~--- 267 (331)
T KOG2014|consen 194 WVKRKVVFPSVKEALSVDWTKKEKRKPRRTKKLYFLLPVLLKFRTSEGRDPGE---TSEEDLERLLQIRNELLESET--- 267 (331)
T ss_pred ehhhhhcccCHHHHHhcccchhhhhhhhccCcceehHHHHHHHHHhcCCCCcc---ccHHHHHHHHHHHHhhccccc---
Confidence 22334678899999888763 456899999999999999999993 348999999999999987322
Q ss_pred CChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 173 LSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 173 ~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
-++++++ +|..+.+.|++|+||++|||+||||||+|
T Consensus 268 i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~i 303 (331)
T KOG2014|consen 268 IIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAI 303 (331)
T ss_pred cCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHh
Confidence 2566777 99999999999999999999999999986
No 6
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=97.29 E-value=0.00012 Score=65.07 Aligned_cols=20 Identities=50% Similarity=0.780 Sum_probs=19.3
Q ss_pred cchHHHHHHHHHHHHHHhhC
Q psy17420 190 LHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 190 L~pvaAiiGGiaAQEvIK~i 209 (209)
++|+||++||++||||||++
T Consensus 244 ~~~~~~~~g~~~~q~~~~~~ 263 (286)
T cd01491 244 LSPMAAFFGGLAAQEVLKAC 263 (286)
T ss_pred cccHHHHhhhHHHHHHHHHc
Confidence 99999999999999999985
No 7
>KOG2016|consensus
Probab=96.33 E-value=0.0004 Score=64.86 Aligned_cols=27 Identities=70% Similarity=1.208 Sum_probs=24.5
Q ss_pred ccCCCcchhhHHHHHHHhhhcCCCCCc
Q psy17420 51 TLWGDHGQAALESARICLINATGLGTE 77 (209)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (209)
|.||.|||+|||+|++||+|.+.+|+|
T Consensus 15 Rlwge~gQ~~le~a~vCll~~~~~g~e 41 (523)
T KOG2016|consen 15 RLWGEEGQAALESASVCLLNATPLGSE 41 (523)
T ss_pred HHHHHHhHhhhhhceEEEecCChhHHH
Confidence 469999999999999999999988765
No 8
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=94.20 E-value=0.19 Score=47.13 Aligned_cols=87 Identities=26% Similarity=0.452 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHH-hCCCCCCC------CC-------------CChhhHHHHHHHHHHHHHhhCCCC-CChHHHHHH
Q psy17420 123 LIYHVMLRGVDKFYTE-HNTYPGEY------DD-------------QVEPDIVKLKSCISKLTAEWGCGV-LSKDDYLHE 181 (209)
Q Consensus 123 ~~~y~~l~Al~~F~~~-~gr~Pg~~------~~-------------~~~~D~~~l~~i~~~i~~~~~~~~-~i~e~~i~e 181 (209)
...+++.+||.+|.++ +|.+|-+. .+ ....|..++.+++.++++..|.+. .++++.++.
T Consensus 287 ~~fwi~~~alk~F~~~~~g~lPl~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~~~~I~~~~i~~ 366 (425)
T cd01493 287 SSFWIMARALKEFVAEENGLLPLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKL 366 (425)
T ss_pred chHHHHHHHHHHHHHhcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 4588999999999988 88776432 11 246899999999999999988764 499999999
Q ss_pred HHHhc--------CCCcchHHHHHHHHHHHHHHhhC
Q psy17420 182 ICRYG--------GGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 182 ~~r~~--------~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
||+.+ ..--||+||+|||+|||||||+|
T Consensus 367 FCkna~~l~~i~~~~~~~~~~~~~gg~~aqE~iK~~ 402 (425)
T cd01493 367 FCKNAAFLRVIRGRSLEHNISAFMGGIAAQEVIKLI 402 (425)
T ss_pred HHhhHHhhhcccCCcccchHHHHHhHHHHHHHHHHH
Confidence 99865 22239999999999999999985
No 9
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=90.58 E-value=0.17 Score=36.68 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=18.8
Q ss_pred CCcchHHHHHHHHHHHHHHhhC
Q psy17420 188 GELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 188 ~EL~pvaAiiGGiaAQEvIK~i 209 (209)
|-|.|+.+++|.+.|+|+||+|
T Consensus 24 GVlg~~~giigslqA~eaik~l 45 (84)
T PF05237_consen 24 GVLGPVVGIIGSLQANEAIKLL 45 (84)
T ss_dssp -B-HHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHH
Confidence 5699999999999999999975
No 10
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=89.66 E-value=1.5 Score=30.54 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 151 EPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 151 ~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
+.+.+-+.+.++--...+|++ ..+...+++++..---.+.|..|++.|++..|++|++
T Consensus 7 ~~h~~fI~a~anLrA~~f~I~-~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~ 64 (67)
T PF02134_consen 7 PLHLDFIYAAANLRAQNFGIP-PLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLL 64 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTT----S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCC-cccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHH
Confidence 555666666666666667777 4777778888844445788899999999999999974
No 11
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=86.27 E-value=0.49 Score=39.56 Aligned_cols=26 Identities=54% Similarity=0.810 Sum_probs=23.6
Q ss_pred CCCcchhhHHHHHHHhhhcCCCCCcC
Q psy17420 53 WGDHGQAALESARICLINATGLGTEC 78 (209)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (209)
||.+||..|..++++++..-|+|.++
T Consensus 11 ~G~e~Q~~L~~s~VlIiG~gglG~ev 36 (197)
T cd01492 11 WGLEAQKRLRSARILLIGLKGLGAEI 36 (197)
T ss_pred hCHHHHHHHHhCcEEEEcCCHHHHHH
Confidence 99999999999999999998888764
No 12
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=79.45 E-value=1.8 Score=36.18 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.5
Q ss_pred cCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 186 GGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 186 ~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
..+-+.|+.+++|++.|+|+||++
T Consensus 179 ~~~~~~~~~~~~~~~~a~e~~k~l 202 (202)
T TIGR02356 179 TAGVIGPVVGVIGSLQALEALKLL 202 (202)
T ss_pred cCCccchHHHHHHHHHHHHHHHhC
Confidence 456799999999999999999986
No 13
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=77.42 E-value=1.7 Score=36.32 Aligned_cols=26 Identities=46% Similarity=0.825 Sum_probs=23.5
Q ss_pred CCCcchhhHHHHHHHhhhcCCCCCcC
Q psy17420 53 WGDHGQAALESARICLINATGLGTEC 78 (209)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (209)
||..+|..|..++|+++-.-|+|.++
T Consensus 9 ~G~~~q~~L~~s~VlviG~gglGsev 34 (198)
T cd01485 9 WGDEAQNKLRSAKVLIIGAGALGAEI 34 (198)
T ss_pred cCHHHHHHHhhCcEEEECCCHHHHHH
Confidence 99999999999999999888888764
No 14
>PRK08328 hypothetical protein; Provisional
Probab=75.79 E-value=2 Score=36.69 Aligned_cols=40 Identities=25% Similarity=0.576 Sum_probs=29.6
Q ss_pred CcHHHHHHHHhhccCceeeecccCCCcchhhHHHHHHHhhhcCCCCCc
Q psy17420 30 ITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTE 77 (209)
Q Consensus 30 I~~~~I~~FCKNa~~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (209)
++++++++|-||... ||..||+.|..++|.++-.-|+|.+
T Consensus 2 l~~~~~~ry~Rq~~~--------~g~~~q~~L~~~~VlIiG~GGlGs~ 41 (231)
T PRK08328 2 LSERELERYDRQIMI--------FGVEGQEKLKKAKVAVVGVGGLGSP 41 (231)
T ss_pred CCHHHHHHHhhHHHh--------cCHHHHHHHhCCcEEEECCCHHHHH
Confidence 456777777776532 7888899998888888887776643
No 15
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=72.63 E-value=3 Score=36.03 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHhhccCceeeecccCCCcchhhHHHHHHHhhhcCCCCCc
Q psy17420 29 AITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTE 77 (209)
Q Consensus 29 ~I~~~~I~~FCKNa~~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (209)
.++++++++|-|+.. =..||..||+.|+.++|+|+-.-|+|.+
T Consensus 4 ~l~~~~~~rY~Rqi~------l~~~g~~~Q~~L~~~~VliiG~GglGs~ 46 (245)
T PRK05690 4 ELSDEEMLRYNRQII------LRGFDFDGQEKLKAARVLVVGLGGLGCA 46 (245)
T ss_pred CCCHHHHHHHHHhcc------chhcCHHHHHHhcCCeEEEECCCHHHHH
Confidence 578888898877652 2358999999999999999977666653
No 16
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=72.57 E-value=2.9 Score=36.00 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.7
Q ss_pred CCCcchHHHHHHHHHHHHHHhhC
Q psy17420 187 GGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 187 ~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
.+-+.|+.+++|++.|+|+||+|
T Consensus 183 ~gv~~p~~~~~~~~~a~e~ik~l 205 (240)
T TIGR02355 183 AGVMAPVVGVVGSLQAMEAIKVL 205 (240)
T ss_pred cCccchHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999975
No 17
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=70.58 E-value=3.5 Score=34.93 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.1
Q ss_pred cCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 186 GGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 186 ~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
..+-+.|+++++|+++++|+||++
T Consensus 179 ~~~~~~~~~~~~a~l~a~e~i~~l 202 (228)
T cd00757 179 EAGVLGPLVGVIGSLQALEALKIL 202 (228)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999975
No 18
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=63.55 E-value=5.8 Score=33.48 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=20.4
Q ss_pred CCCcchHHHHHHHHHHHHHHhhC
Q psy17420 187 GGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 187 ~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
.+-+.|+.+++|++.|.|+||+|
T Consensus 184 ~gv~~~~~~~i~~~~a~ealk~l 206 (212)
T PRK08644 184 NPLMAPRVNIAAAHQANLVLRLI 206 (212)
T ss_pred CCccchHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999975
No 19
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=61.48 E-value=6.3 Score=36.03 Aligned_cols=44 Identities=34% Similarity=0.465 Sum_probs=32.6
Q ss_pred CCCcHHHHHHHHhhccCceeeecccCCCcchhhHHHHHHHhhhcCCCCCc
Q psy17420 28 SAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTE 77 (209)
Q Consensus 28 ~~I~~~~I~~FCKNa~~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (209)
..++.++++.+.+|.. -..||..+|+.|..++|.|+-.-|+|..
T Consensus 106 ~~~s~~~~~~y~r~i~------l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ 149 (376)
T PRK08762 106 RLLTDEQDERYSRHLR------LPEVGEEGQRRLLEARVLLIGAGGLGSP 149 (376)
T ss_pred cCCCHHHHHHHHHhcc------hhhcCHHHHHHHhcCcEEEECCCHHHHH
Confidence 4567888888887752 2348888999999999988876666543
No 20
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=61.38 E-value=6.4 Score=35.86 Aligned_cols=27 Identities=37% Similarity=0.615 Sum_probs=22.7
Q ss_pred cCCCcchhhHHHHHHHhhhcCCCCCcC
Q psy17420 52 LWGDHGQAALESARICLINATGLGTEC 78 (209)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (209)
.||..||..|..+++.++-.-|+|.++
T Consensus 17 ~~g~~~q~~L~~~~VlivG~GGlGs~~ 43 (355)
T PRK05597 17 EIGQQGQQSLFDAKVAVIGAGGLGSPA 43 (355)
T ss_pred hcCHHHHHHHhCCeEEEECCCHHHHHH
Confidence 488889999999999999888887654
No 21
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=60.42 E-value=6.8 Score=36.16 Aligned_cols=47 Identities=32% Similarity=0.528 Sum_probs=37.1
Q ss_pred CCCCCcHHHHHHHHhhccCceeeecccCCCcchhhHHHHHHHhhhcCCCCCcC
Q psy17420 26 PSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTEC 78 (209)
Q Consensus 26 ~~~~I~~~~I~~FCKNa~~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (209)
+...++.++++++-|+. .+ ..||..||+.|..++|.|+-.-|+|.++
T Consensus 11 ~~~~l~~~~~~ry~Rq~---~l---~~~g~~~q~~L~~~~VlviG~GGlGs~v 57 (392)
T PRK07878 11 PAAELTRDEVARYSRHL---II---PDVGVDGQKRLKNARVLVIGAGGLGSPT 57 (392)
T ss_pred CccCCCHHHHHHhhhee---ch---hhcCHHHHHHHhcCCEEEECCCHHHHHH
Confidence 34568999998887654 21 3589999999999999999988888754
No 22
>KOG2013|consensus
Probab=60.16 E-value=24 Score=34.20 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhhccCce
Q psy17420 6 GRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIH 46 (209)
Q Consensus 6 ~~D~~~v~~~v~~~~~~~g~~~~~I~~~~I~~FCKNa~~L~ 46 (209)
-+|..+-.+...+....++.++..|-. ++|-.|..+|+
T Consensus 226 t~d~~Er~~~i~~~~~~~~~~~~~i~~---klF~~dI~yl~ 263 (603)
T KOG2013|consen 226 TEDLKERRESIVEIDKNLDFGPFKIFN---KLFIYDIEYLL 263 (603)
T ss_pred chHHHHHHHHHHHHhhccCCChhhhhh---HHHHHHHHHHH
Confidence 467777777777787777665544433 88888888886
No 23
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=56.57 E-value=9.1 Score=34.75 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.7
Q ss_pred CCCcchHHHHHHHHHHHHHHhhC
Q psy17420 187 GGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 187 ~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
.+-+.|+.+++|++.|+|+||+|
T Consensus 184 ~gv~~p~~~~i~~~~a~ealk~l 206 (339)
T PRK07688 184 AGIISPAVQIVASYQVTEALKLL 206 (339)
T ss_pred CCcccHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999975
No 24
>PRK07411 hypothetical protein; Validated
Probab=56.47 E-value=8.9 Score=35.43 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=36.9
Q ss_pred CCCCcHHHHHHHHhhccCceeeecccCCCcchhhHHHHHHHhhhcCCCCCcC
Q psy17420 27 SSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTEC 78 (209)
Q Consensus 27 ~~~I~~~~I~~FCKNa~~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (209)
...+++.++++|-|+. . -..||..||+.|..+++.|+..-|+|.++
T Consensus 8 ~~~l~~~~~~ry~Rq~---~---l~~~g~~~q~~L~~~~VlivG~GGlG~~v 53 (390)
T PRK07411 8 EIQLSKDEYERYSRHL---I---LPEVGLEGQKRLKAASVLCIGTGGLGSPL 53 (390)
T ss_pred cccCCHHHHHHhhcee---c---hhhcCHHHHHHHhcCcEEEECCCHHHHHH
Confidence 3457889999887754 2 23489999999999999999999888754
No 25
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=54.12 E-value=9.9 Score=34.96 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHhhccCceeeecccCCCcchhhHHHHHHHhhhcCCCCCc
Q psy17420 28 SAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTE 77 (209)
Q Consensus 28 ~~I~~~~I~~FCKNa~~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (209)
-.+++.++++|.|+. ++ ..||-.||+.|..+||.+|..-|+|..
T Consensus 12 ~~~~~~e~~ry~Rqi---~l---~~~g~~~q~~l~~~~VliiG~GglG~~ 55 (370)
T PRK05600 12 MQLPTSELRRTARQL---AL---PGFGIEQQERLHNARVLVIGAGGLGCP 55 (370)
T ss_pred CCCCHHHHHHhhccc---ch---hhhCHHHHHHhcCCcEEEECCCHHHHH
Confidence 357888888777543 32 358999999999999999988877754
No 26
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=53.38 E-value=2 Score=38.28 Aligned_cols=40 Identities=25% Similarity=0.485 Sum_probs=32.2
Q ss_pred cHHHHHHHHhhccCceeeecccCCCcchhhHHHHHHHhhhcCCCCCcC
Q psy17420 31 TEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTEC 78 (209)
Q Consensus 31 ~~~~I~~FCKNa~~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (209)
++++++++.|+ |++ ||-.||..|.+++++++...|+|.++
T Consensus 2 s~~E~~RYsRQ---IrL-----wG~EgQ~KL~~SrVLVVG~GGLGsEV 41 (287)
T PTZ00245 2 RDAEAVRYDRQ---IRL-----WGKSTQQQLMHTSVALHGVAGAAAEA 41 (287)
T ss_pred CHHHHHHHhHH---HHH-----hCHHHHHHHhhCeEEEECCCchHHHH
Confidence 45566666554 444 99999999999999999999999875
No 27
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.10 E-value=31 Score=25.93 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhhcc
Q psy17420 5 AGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNAS 43 (209)
Q Consensus 5 A~~D~~~v~~~v~~~~~~~g~~~~~I~~~~I~~FCKNa~ 43 (209)
-+-+++.|..+|..+-..- +...|+..-+.-||+|+-
T Consensus 12 ~~leAAaFRrLv~HL~~rs--dvQNIDLMnLAgFCRNCL 48 (104)
T COG3492 12 DRLEAAAFRRLVEHLQERS--DVQNIDLMNLAGFCRNCL 48 (104)
T ss_pred HHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHH
Confidence 3456777777765553322 236789999999999974
No 28
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=50.58 E-value=66 Score=28.74 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=43.3
Q ss_pred CCCChhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 147 DDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 147 ~~~~~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
+.+..++.+.+.+.+++-.++.+++. ++-.+++.++.--=--+.++-|++||..+-|++|++
T Consensus 194 ~~d~~~~~~~i~~~a~~ra~~f~i~~-~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~ 255 (291)
T cd01488 194 DGDDPEHIEWLYQKALERAAQFNISG-VTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIA 255 (291)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCc-ccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHH
Confidence 33345666677777777777777663 333455555554444588899999999999999974
No 29
>KOG4479|consensus
Probab=49.26 E-value=26 Score=25.75 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhhccCc
Q psy17420 7 RDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFI 45 (209)
Q Consensus 7 ~D~~~v~~~v~~~~~~~g~~~~~I~~~~I~~FCKNa~~L 45 (209)
.|.+.++++++.-|-+-|. .++|+..|||.=.=
T Consensus 15 gdr~~lKeLL~trLvECGW------~d~ik~mcrniimE 47 (92)
T KOG4479|consen 15 GDRAALKELLHTRLVECGW------HDDIKEMCRNIIME 47 (92)
T ss_pred ccHHHHHHHHHHHHHHccc------HHHHHHHHHHHHHH
Confidence 4788899999999888886 68899999997443
No 30
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=49.01 E-value=1e+02 Score=27.73 Aligned_cols=58 Identities=9% Similarity=0.118 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 151 EPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 151 ~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
+++++-+.+.++.-...++++. .+.-.++.++.--=--+..+.|++.|++..|++|++
T Consensus 217 ~~~~~~v~~~a~lRa~~f~I~~-~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~ 274 (312)
T cd01489 217 QDALDFVAAAANLRSHVFGIPM-KSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVL 274 (312)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC-CCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566653 333344555433333466778999999999999974
No 31
>PRK08223 hypothetical protein; Validated
Probab=45.68 E-value=15 Score=32.89 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=18.0
Q ss_pred cchHHHHHHHHHHHHHHhhC
Q psy17420 190 LHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 190 L~pvaAiiGGiaAQEvIK~i 209 (209)
..+++.++|++.|-||||+|
T Consensus 218 ~g~~~g~~g~~~a~E~ik~l 237 (287)
T PRK08223 218 TGLACQLCAGVVATEVLKIL 237 (287)
T ss_pred ccchHHHHHHHHHHHHHHHH
Confidence 37889999999999999985
No 32
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=45.63 E-value=1.3e+02 Score=27.69 Aligned_cols=73 Identities=16% Similarity=0.033 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q psy17420 125 YHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQE 204 (209)
Q Consensus 125 ~y~~l~Al~~F~~~~gr~Pg~~~~~~~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQE 204 (209)
+||+-.+.+-+......++.+.. -+|-....+-.-..+..+|++.+++..- .+.|.|+ .||.|+=+++-+.
T Consensus 43 ~~F~~L~~WL~~~~g~~f~~p~e---~DDPn~~~~~Il~~lr~~g~~~df~p~k----Lk~G~Ge--~vc~VLd~Lad~A 113 (359)
T PF10498_consen 43 YYFTSLCAWLISKAGRKFEQPQE---YDDPNATISNILDELRKLGVPVDFPPSK----LKQGSGE--HVCYVLDQLADEA 113 (359)
T ss_pred HHHHHHHHHHHHhcCCCCCCCcc---cCCHHHHHHHHHHHHHccCCCCCCChHH----hhCCCCH--HHHHHHHHHHHHH
Confidence 55555565555544344554432 2355544443344445567665544433 4557776 5788887776655
Q ss_pred HH
Q psy17420 205 VI 206 (209)
Q Consensus 205 vI 206 (209)
..
T Consensus 114 L~ 115 (359)
T PF10498_consen 114 LK 115 (359)
T ss_pred HH
Confidence 43
No 33
>COG3259 FrhA Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion]
Probab=44.64 E-value=16 Score=34.60 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHh-cCCCcchHHHHHHHH
Q psy17420 122 LLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRY-GGGELHAVSSFLGGC 200 (209)
Q Consensus 122 ~~~~y~~l~Al~~F~~~~gr~Pg~~~~~~~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~-~~~EL~pvaAiiGGi 200 (209)
+-.+|+-|.|+..|..--.+.||. .++..++...+.++ .++-+.+... ++-.+||+.+++||+
T Consensus 104 SHALh~y~La~PDfl~~~d~~~~~-----i~~~~e~~k~~i~L-----------r~~gq~Iv~~lGGk~IHp~~~~pGG~ 167 (441)
T COG3259 104 SHALHLYFLAAPDFLGPPDADPGM-----IDEYPELAKEAIRL-----------RKIGQTIVEVLGGKAIHPVNAVPGGV 167 (441)
T ss_pred hhHHHHHHhhCccccCCcccChhh-----hhhhHHHHHHHHHH-----------HHHHHHHHHHhcCCCCCCCccCCCcc
Confidence 455777778888776532333322 22333333333332 1233344443 455799999999996
Q ss_pred H
Q psy17420 201 A 201 (209)
Q Consensus 201 a 201 (209)
.
T Consensus 168 ~ 168 (441)
T COG3259 168 A 168 (441)
T ss_pred C
Confidence 4
No 34
>PF13884 Peptidase_S74: Chaperone of endosialidase; PDB: 3GUD_A.
Probab=40.78 E-value=7.8 Score=25.65 Aligned_cols=10 Identities=50% Similarity=0.650 Sum_probs=6.9
Q ss_pred HHHHHHHHhh
Q psy17420 199 GCAAQEVIKI 208 (209)
Q Consensus 199 GiaAQEvIK~ 208 (209)
|+.||||.++
T Consensus 46 G~IAQev~~v 55 (58)
T PF13884_consen 46 GFIAQEVQEV 55 (58)
T ss_dssp E--HHHHHHH
T ss_pred EEeHHHHHHh
Confidence 8999999876
No 35
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=38.65 E-value=26 Score=31.78 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.5
Q ss_pred CCCcchHHHHHHHHHHHHHHhhC
Q psy17420 187 GGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 187 ~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
.+-+.|+.+++|++.+.|+||++
T Consensus 184 ~Gvl~p~v~~iaslqa~EalK~L 206 (338)
T PRK12475 184 AGIIQPAVQIVVAYQVTEALKIL 206 (338)
T ss_pred CCcCchHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999975
No 36
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=38.48 E-value=33 Score=25.19 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCC---CCCCcHHHHHHHHhhccCceeeecc
Q psy17420 6 GRDADVIYRRAQQLLHQLGQP---SSAITEAQVKLFCRNASFIHVIRGT 51 (209)
Q Consensus 6 ~~D~~~v~~~v~~~~~~~g~~---~~~I~~~~I~~FCKNa~~L~vi~~~ 51 (209)
+.|+.++..++.. | +-+ ...|+.++|..||+++.+-..+-..
T Consensus 32 edDA~RYa~lLEA---q-d~~~p~Ve~id~~~i~~fC~~~gy~~~iv~~ 76 (86)
T PF11360_consen 32 EDDAERYAGLLEA---Q-DFPDPTVEEIDPEEIEEFCRSAGYEYEIVPP 76 (86)
T ss_pred HHHHHHHHHHHHh---c-CCCCCCeEEECHHHHHHHHHHCCceEEEECC
Confidence 4577777655532 2 222 3678999999999999877665444
No 37
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=37.80 E-value=3.6e+02 Score=25.57 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=25.8
Q ss_pred hCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 168 WGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 168 ~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
++++. .+.--++.++------+..+.|++.|++..|++|++
T Consensus 301 y~I~~-~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~ 341 (435)
T cd01490 301 YSIPP-ADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVV 341 (435)
T ss_pred cCCCc-cCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 44442 333334444433333466778999999999999975
No 38
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=32.69 E-value=3.3e+02 Score=25.45 Aligned_cols=51 Identities=8% Similarity=0.138 Sum_probs=31.6
Q ss_pred hCCCCCCCCCCChhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17420 139 HNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQ 203 (209)
Q Consensus 139 ~gr~Pg~~~~~~~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQ 203 (209)
+|++|. .+..+.|..... .. ..+++.++..+..... ..|||+.+..|+.+.
T Consensus 69 ~G~LPt------~~el~~f~~~L~---~~----~~lp~~~~~~~i~~~p-~~hpM~~L~a~v~~l 119 (406)
T cd06113 69 FGYLPN------KEELEEFCEILS---SY----RTLPDNFVEDVILKAP-SKDIMNKLQRSVLAL 119 (406)
T ss_pred cCCCCC------HHHHHHHHHHHH---Hh----cCCCHHHHHHHHHhCC-CcCHHHHHHHHHHhc
Confidence 688997 444455544332 22 1245566666666555 589999998888653
No 39
>KOG1597|consensus
Probab=30.47 E-value=49 Score=29.87 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCC---cHHHHHHHHhhccC
Q psy17420 5 AGRDADVIYRRAQQLLHQLGQPSSAI---TEAQVKLFCRNASF 44 (209)
Q Consensus 5 A~~D~~~v~~~v~~~~~~~g~~~~~I---~~~~I~~FCKNa~~ 44 (209)
|.-+.+++-+.++.+++.|+...+.+ +.+-+.+||-|..-
T Consensus 174 anv~kKEIgr~~K~i~~~l~~s~~~~s~~t~~~m~RFCs~L~L 216 (308)
T KOG1597|consen 174 ANVSKKEIGRCVKLIGEALETSVDLISISTGDFMPRFCSNLGL 216 (308)
T ss_pred HcCCHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHhcCC
Confidence 34566778888899999888876666 78999999998764
No 40
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=28.07 E-value=5 Score=33.45 Aligned_cols=20 Identities=45% Similarity=0.685 Sum_probs=19.1
Q ss_pred cchHHHHHHHHHHHHHHhhC
Q psy17420 190 LHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 190 L~pvaAiiGGiaAQEvIK~i 209 (209)
+.|+++++|++.+||+||++
T Consensus 155 ~~p~~~~~~~~~~~e~~k~~ 174 (197)
T cd01492 155 LAPVAAVVGGILAQDVINAL 174 (197)
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999975
No 41
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=27.48 E-value=7.8 Score=33.42 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.6
Q ss_pred CCCcchHHHHHHHHHHHHHHhhC
Q psy17420 187 GGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 187 ~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
.+-+.|+.+++|++.|+|+||++
T Consensus 191 ~gv~~~~~~~~~~~~a~e~ik~l 213 (245)
T PRK05690 191 AGVMAPLVGVIGSLQAMEAIKLL 213 (245)
T ss_pred CCccchHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999975
No 42
>PF04930 FUN14: FUN14 family; InterPro: IPR007014 This is a family of short proteins found in eukaryotes and some archaea. Although the function of these proteins is not known they may contain transmembrane helices.
Probab=27.42 E-value=2.5e+02 Score=20.60 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHHHHhhC--CCCCChHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17420 151 EPDIVKLKSCISKLTAEWG--CGVLSKDDYLHEICRYGGGELHAVSSFLGGCA 201 (209)
Q Consensus 151 ~~D~~~l~~i~~~i~~~~~--~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGia 201 (209)
..|.+++.+.+.+..+... .+..-.....+++.......++..++|+||++
T Consensus 44 ~Vnw~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gF~~Gf~ 96 (100)
T PF04930_consen 44 KVNWDKLEKDVKKALDQNKGKFDAPDIKSLWNKLMDFLKSNLPFSAGFLAGFL 96 (100)
T ss_pred EECHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHcCccHhHHHHHHHH
Confidence 5677777777777666554 11112234456777777788899999999985
No 43
>PRK07411 hypothetical protein; Validated
Probab=26.99 E-value=11 Score=34.71 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.6
Q ss_pred CCCcchHHHHHHHHHHHHHHhhC
Q psy17420 187 GGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 187 ~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
.|-|.|+.+++|.+.|+|+||+|
T Consensus 198 ~gvlg~~~~~~g~~~a~eaik~l 220 (390)
T PRK07411 198 GGVLGILPGIIGVIQATETIKII 220 (390)
T ss_pred CCcCcchHHHHHHHHHHHHHHHH
Confidence 45788999999999999999975
No 44
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins. Examination of Pbx1 has shown that, in addition to the homeodomain, a short 16-residue C-terminal tail is essential for maximal cooperative interactions with Hox partners as well as for maximal monomeric binding of Pbx1 to DNA. The PBX domain is a bipartite acidic domain [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=26.48 E-value=1.1e+02 Score=25.81 Aligned_cols=40 Identities=8% Similarity=0.141 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhhcc
Q psy17420 3 DQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNAS 43 (209)
Q Consensus 3 ~KA~~D~~~v~~~v~~~~~~~g~~~~~I~~~~I~~FCKNa~ 43 (209)
+|-.+-..+|..+|.++|++=++- -.||..+|+.+..+.+
T Consensus 125 ~kye~ac~eF~~hV~~lLreQs~~-RPIs~keiE~m~~~i~ 164 (191)
T PF03792_consen 125 EKYEQACNEFTEHVMNLLREQSEF-RPISPKEIERMVNIIH 164 (191)
T ss_pred HHHHHHhhhhHHHHHHHHHHhccc-CCCCHHHHHHHHHHHH
Confidence 355677889999999999987764 3699999999988764
No 45
>KOG1373|consensus
Probab=24.60 E-value=2.7e+02 Score=26.45 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=40.0
Q ss_pred hhHHHHHhCCCch-HHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHHh-hCCCCCChHHHHHHHHHhcC
Q psy17420 110 RQISEALENGDGL-LIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAE-WGCGVLSKDDYLHEICRYGG 187 (209)
Q Consensus 110 ~sL~~~l~~p~s~-~~~y~~l~Al~~F~~~~gr~Pg~~~~~~~~D~~~l~~i~~~i~~~-~~~~~~i~e~~i~e~~r~~~ 187 (209)
.++.+.+.+|-.. ..+-+++-+..-|.+..-..-|... ++-+.+|++ + +-+...-..+..+|+-|+-
T Consensus 349 ~s~~~~~~dPi~~i~Yi~fml~sca~FsktWievSgsSa---rDvAkqlKe-------Q~mvm~G~RE~n~~~eLnr~I- 417 (476)
T KOG1373|consen 349 ESFGEALQDPIHFLVYIVFMLGSCALFSKTWIEVSGSSA---RDVAKQLKE-------QQMVMRGHRETNMAKELNRYI- 417 (476)
T ss_pred HHHHHHhhCcchhHHHHHHHHHHHHHHHhHHHHHcCCCH---HHHHHHHHh-------ccceecCcchhhHHHHHHhhc-
Confidence 5667778888643 3334444455555554433333221 222223322 1 1112222456778888864
Q ss_pred CCcchHHHHHHHHH
Q psy17420 188 GELHAVSSFLGGCA 201 (209)
Q Consensus 188 ~EL~pvaAiiGGia 201 (209)
|+||..||.+
T Consensus 418 ----PtAA~~Gg~~ 427 (476)
T KOG1373|consen 418 ----PTAAAFGGLC 427 (476)
T ss_pred ----cHHHHhhhhH
Confidence 8999999975
No 46
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=23.75 E-value=1.4e+02 Score=31.44 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhhc
Q psy17420 6 GRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNA 42 (209)
Q Consensus 6 ~~D~~~v~~~v~~~~~~~g~~~~~I~~~~I~~FCKNa 42 (209)
.+|+++|.++++++.++++.+.+.++++.++.|++++
T Consensus 306 ~~d~~~~~~~a~~i~~~~~~~~~~lde~li~~~~~~~ 342 (1008)
T TIGR01408 306 QQDAEELLKLATSISETLEEKVPDVDAKLVHWLSWTA 342 (1008)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHhc
Confidence 5799999999999999888777779999999999875
No 47
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=23.02 E-value=5.6e+02 Score=23.77 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=38.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcc
Q psy17420 112 ISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELH 191 (209)
Q Consensus 112 L~~~l~~p~s~~~~y~~l~Al~~F~~~~gr~Pg~~~~~~~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~ 191 (209)
+++..++..+...+|++ -+|++|. .+..++| ..++.... .++++ +.++....-.+.|
T Consensus 36 I~dLa~~~~feev~yLL---------l~G~LPt------~~el~~f---~~~L~~~~----~lp~~-v~~~i~~~p~~~h 92 (382)
T cd06107 36 IEQLAESSTYEEVAYLL---------LWGELPT------QEQYDEF---QRRLSEHM----MVPES-VHRLIQTFPRDAH 92 (382)
T ss_pred HHHHHhcCCHHHHHHHH---------hCCCCCC------HHHHHHH---HHHHHHcc----CCCHH-HHHHHHhCCCCCC
Confidence 34444444444445544 3688996 3344444 33443332 23333 4556777778899
Q ss_pred hHHHHHHHHHH
Q psy17420 192 AVSSFLGGCAA 202 (209)
Q Consensus 192 pvaAiiGGiaA 202 (209)
||..+..|+.+
T Consensus 93 PM~~L~~~vs~ 103 (382)
T cd06107 93 PMGILCAGLSA 103 (382)
T ss_pred cHHHHHHHHHh
Confidence 99998888754
No 48
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=22.64 E-value=84 Score=26.17 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.3
Q ss_pred cCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 186 GGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 186 ~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
..+-+.|+-+++|++-|.|++|++
T Consensus 177 ~~g~~~p~v~~~a~~qa~~~l~~~ 200 (200)
T TIGR02354 177 GLGLMAPRVQICAAHQANLVLELI 200 (200)
T ss_pred CCCCchhHHHHHHHHHHHHHHHhC
Confidence 446799999999999999999975
No 49
>PRK14032 citrate synthase; Provisional
Probab=20.91 E-value=2.8e+02 Score=26.36 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=32.4
Q ss_pred hCCCCCCCCCCChhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17420 139 HNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQ 203 (209)
Q Consensus 139 ~gr~Pg~~~~~~~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQ 203 (209)
+|++|. .+..+.|.+. +.... .+++.++.++..... ..|||+.+..|+.+-
T Consensus 99 ~G~LPt------~~el~~f~~~---L~~~~----~lp~~~v~~~i~~~p-~~hPM~~L~a~vsaL 149 (447)
T PRK14032 99 FGELPT------KEELAEFTEL---LGDYR----ELPDGFTRDMILKAP-SKDIMNSLARSVLAL 149 (447)
T ss_pred cCCCCC------HHHHHHHHHH---HHHhc----CCCHHHHHHHHHhCC-CcCHHHHHHHHHHhh
Confidence 689997 4445555443 32221 255665566666666 689999999988764
No 50
>PF07970 COPIIcoated_ERV: Endoplasmic reticulum vesicle transporter ; InterPro: IPR012936 This domain occurs in many hypothetical proteins, and also two partially characterised proteins. One of these proteins, PTX1 Q96RQ1 from SWISSPROT, is a homeodomain-containing transcription factor involved in regulating all pituitary hormone genes []. This protein is down regulated in prostate carcinoma []. The other protein, ERGIC-32 Q969X5 from SWISSPROT, is involved in protein transport from the ER to the Golgi [].
Probab=20.79 E-value=36 Score=28.91 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHHH
Q psy17420 189 ELHAVSSFLGGCAA 202 (209)
Q Consensus 189 EL~pvaAiiGGiaA 202 (209)
-|..+|||+||+.+
T Consensus 203 flt~lcaIiGGvft 216 (222)
T PF07970_consen 203 FLTRLCAIIGGVFT 216 (222)
T ss_pred HHHHHHHHhchHhe
Confidence 35689999999864
No 51
>TIGR01592 holin_SPP1 holin, SPP1 family. This model represents one of more than 30 families of phage proteins, all lacking detectable homology with each other, known or believed to act as holins. Holins act in cell lysis by bacteriophage. Members of this family are found in phage PBSX and phage SPP1, among others.
Probab=20.79 E-value=1.9e+02 Score=20.80 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCcHHHHHHHHh
Q psy17420 11 VIYRRAQQLLHQLGQPSSAITEAQVKLFCR 40 (209)
Q Consensus 11 ~v~~~v~~~~~~~g~~~~~I~~~~I~~FCK 40 (209)
-+...+.+.|...|.++-+|++++|..|..
T Consensus 12 l~lAlvNq~L~~~G~~pipide~~i~~~v~ 41 (75)
T TIGR01592 12 LIIALVNQFLAMKGISPIPVDEEGISTVVD 41 (75)
T ss_pred HHHHHHHHHHHHCCCCCCCccHHHHHHHHH
Confidence 356788899999999998999999998874
No 52
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=20.07 E-value=1.2e+02 Score=17.90 Aligned_cols=15 Identities=27% Similarity=0.600 Sum_probs=11.9
Q ss_pred HHHHHHHHhCCCCCC
Q psy17420 131 GVDKFYTEHNTYPGE 145 (209)
Q Consensus 131 Al~~F~~~~gr~Pg~ 145 (209)
=+..|.+++||.|.-
T Consensus 16 rv~~f~~~ngRlPny 30 (33)
T PF09373_consen 16 RVNNFYESNGRLPNY 30 (33)
T ss_pred HHHHHHHHcCCCCCe
Confidence 346799999999963
Done!