Query psy17420
Match_columns 209
No_of_seqs 187 out of 705
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 22:02:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tt5_A APPBP1, amyloid protein 100.0 4.3E-35 1.5E-39 275.8 17.6 164 1-209 343-506 (531)
2 3cmm_A Ubiquitin-activating en 99.8 1.2E-19 4.1E-24 181.3 9.7 132 67-209 222-369 (1015)
3 1y8q_A Ubiquitin-like 1 activa 99.7 2.3E-17 7.9E-22 147.5 4.1 99 104-209 208-318 (346)
4 1tt5_B Ubiquitin-activating en 96.6 0.011 3.9E-07 53.9 10.0 64 145-209 240-303 (434)
5 2nvu_B Maltose binding protein 96.0 0.015 5.3E-07 56.3 8.3 63 146-209 612-674 (805)
6 1zud_1 Adenylyltransferase THI 81.1 0.65 2.2E-05 38.7 2.0 23 187-209 187-209 (251)
7 1jw9_B Molybdopterin biosynthe 78.8 0.91 3.1E-05 37.7 2.2 24 186-209 189-212 (249)
8 2v31_A Ubiquitin-activating en 75.5 0.1 3.5E-06 39.2 -4.1 45 65-117 66-111 (112)
9 3h8v_A Ubiquitin-like modifier 71.4 1.4 4.8E-05 38.0 1.5 20 190-209 217-236 (292)
10 3h5n_A MCCB protein; ubiquitin 63.7 3.2 0.00011 36.4 2.2 24 186-209 290-313 (353)
11 1tt5_A APPBP1, amyloid protein 55.5 32 0.0011 31.8 7.6 66 123-188 299-386 (531)
12 3rui_A Ubiquitin-like modifier 50.8 6.8 0.00023 34.5 2.1 33 44-76 15-47 (340)
13 3fyb_A Protein of unknown func 47.3 8.2 0.00028 28.3 1.7 38 4-43 10-47 (104)
14 2eo2_A Adult MALE hypothalamus 43.1 18 0.00062 24.7 2.8 27 14-40 31-60 (71)
15 2o35_A Hypothetical protein DU 39.4 12 0.00041 27.4 1.5 38 4-43 11-48 (105)
16 1y8q_A Ubiquitin-like 1 activa 37.1 1.3 4.4E-05 38.8 -4.8 41 29-77 10-50 (346)
17 4gsl_A Ubiquitin-like modifier 33.6 18 0.0006 34.4 2.1 33 44-76 307-339 (615)
18 3vh1_A Ubiquitin-like modifier 27.7 25 0.00087 33.2 2.1 33 44-76 308-340 (598)
19 2kep_A General secretion pathw 26.4 94 0.0032 22.6 4.6 22 124-145 15-36 (110)
20 1y8q_B Anthracycline-, ubiquit 25.5 4.1E+02 0.014 25.1 9.9 54 155-209 353-406 (640)
21 2kmu_A ATP-dependent DNA helic 25.4 43 0.0015 21.7 2.3 12 133-144 18-29 (56)
22 3msu_A Citrate synthase; helix 22.7 3.6E+02 0.012 24.1 8.7 68 112-202 82-149 (427)
23 3brj_A Mannitol operon repress 20.6 72 0.0025 25.4 3.1 41 5-47 87-127 (175)
No 1
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=100.00 E-value=4.3e-35 Score=275.83 Aligned_cols=164 Identities=44% Similarity=0.800 Sum_probs=148.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhhccCceeeecccCCCcchhhHHHHHHHhhhcCCCCCcCCC
Q psy17420 1 YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTECGP 80 (209)
Q Consensus 1 y~~KA~~D~~~v~~~v~~~~~~~g~~~~~I~~~~I~~FCKNa~~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (209)
||+||++|+++|.++|+++++++|++++.|++++|+.||||+++|++++|+
T Consensus 343 y~~ka~~D~~~v~~~v~~~~~~~~~~~~~i~~~~i~~f~kn~~~l~~i~~~----------------------------- 393 (531)
T 1tt5_A 343 YREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCR----------------------------- 393 (531)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCSSSSCHHHHHHHHHTGGGCEEECCC-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHhchhhhhccccc-----------------------------
Confidence 799999999999999999999999988999999999999999999999999
Q ss_pred CCccCcccccccccCCCCccccCCCCCChhhHHHHHhCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHH
Q psy17420 81 VNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSC 160 (209)
Q Consensus 81 ~~f~~~~~~~~~~~~~~~~~~~~p~~~~f~sL~~~l~~p~s~~~~y~~l~Al~~F~~~~gr~Pg~~~~~~~~D~~~l~~i 160 (209)
++.+++++.+..-+.+...+..|+++.++|++|||+++|.++|||+|++++++.++|+++|.++
T Consensus 394 ----------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~f~~~~gr~P~~~~~~~~~D~~~l~~~ 457 (531)
T 1tt5_A 394 ----------------SLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSC 457 (531)
T ss_dssp ----------------CHHHHHSTTTSCHHHHHHHTTSTTSTHHHHHHHHHHHHHHHHHSSCTTCSTTTHHHHHHHHHHH
T ss_pred ----------------chHhhhccccchhhhhhhhhhccccchHHHHHHHHHHHHHHHhCCCCCccccchHHHHHHHHHH
Confidence 4556666433322446666777888999999999999999999999999877778999999999
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 161 ISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 161 ~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
+.+++.+.+++..+++++++|++|++++||||||||+||+|||||||+|
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~e~~r~~~~el~pvaA~~GGi~AQEviK~i 506 (531)
T 1tt5_A 458 LTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKII 506 (531)
T ss_dssp HHHHHHHHTCCCCCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccccHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999887766899999999999999999999999999999999975
No 2
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.2e-19 Score=181.28 Aligned_cols=132 Identities=20% Similarity=0.306 Sum_probs=104.9
Q ss_pred HhhhcCCCCCcCCCCCccCcccccccccCCCC-ccccCCCCCChhhHHHHHhCCCc----------hHHHHHHHHHHHHH
Q psy17420 67 CLINATGLGTECGPVNFCPVEGLLLSSISSGI-ADEYDPRTSNARQISEALENGDG----------LLIYHVMLRGVDKF 135 (209)
Q Consensus 67 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~p~~~~f~sL~~~l~~p~s----------~~~~y~~l~Al~~F 135 (209)
.+++|++|.+ +.+..|.++-.. ++ .+...|.++.|++|++.+.+|+. +.++|++||||++|
T Consensus 222 ~~~~p~~f~I-~Dts~~~~yv~~-------g~~~qvk~p~~i~f~~l~~~l~~p~~l~~d~~k~~~~~~l~~~~~Al~~F 293 (1015)
T 3cmm_A 222 EVLGPFAFRI-GSVKEYGEYKKG-------GIFTEVKVPRKISFKSLKQQLSNPEFVFSDFAKFDRAAQLHLGFQALHQF 293 (1015)
T ss_dssp EEEETTEEEC-SCCTTTCCCCBC-------CEEEECCCCEEECCCCHHHHHHSCCBCCSCGGGTHHHHHHHHHHHHHHHH
T ss_pred EEcCCceeEe-cccchhhhhhcC-------ceeEEecCCcccCHHHHHHHHcChHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 3455666665 335555444310 11 12234667899999999998842 57899999999999
Q ss_pred HHHh-CCCCCCCCCCChhhHHHHHHHHHHHHHhhCCC----CCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 136 YTEH-NTYPGEYDDQVEPDIVKLKSCISKLTAEWGCG----VLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 136 ~~~~-gr~Pg~~~~~~~~D~~~l~~i~~~i~~~~~~~----~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
.++| ||+|++++ ++|+++|.+++++++.+.+.. ..++++++++++|++++|||||||++||+|||||||+|
T Consensus 294 ~~~~~gr~P~~~~---~~D~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~el~pvaA~iGGivAQEVIKai 369 (1015)
T 3cmm_A 294 AVRHNGELPRTMN---DEDANELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLKAC 369 (1015)
T ss_dssp HHHTTTCCCCTTC---HHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCCC---HHHHHHHHHHHHHHHHhcCCCccccccCcHHHHHHHHHhcCcccCcHHHHhcchHHHHHHHHh
Confidence 9999 99999887 999999999999999875532 35889999999999999999999999999999999974
No 3
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=99.66 E-value=2.3e-17 Score=147.53 Aligned_cols=99 Identities=23% Similarity=0.213 Sum_probs=82.1
Q ss_pred CCCCChhhHHHHHhCCCc----------hHHHHHHHHHHHHHHHHhCCCCCC-CCCCChhhHHHHHHHHHHHHHhhCCCC
Q psy17420 104 PRTSNARQISEALENGDG----------LLIYHVMLRGVDKFYTEHNTYPGE-YDDQVEPDIVKLKSCISKLTAEWGCGV 172 (209)
Q Consensus 104 p~~~~f~sL~~~l~~p~s----------~~~~y~~l~Al~~F~~~~gr~Pg~-~~~~~~~D~~~l~~i~~~i~~~~~~~~ 172 (209)
|.+..|.+|++++..|.. ++++|++++|+++|.++|||+|+. ++ ++|+++|.+++.+++.+.+++.
T Consensus 208 ~~~~~f~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~al~~f~~~~~~~P~~~~~---~~d~~~l~~~a~~~~~~~~~~~ 284 (346)
T 1y8q_A 208 KKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTY---EEDSELLLQIRNDVLDSLGISP 284 (346)
T ss_dssp EEEEECCCHHHHTSCCSCSHHHHHHHTTSCTHHHHHHHHHHHHHHSSSCCCGGGH---HHHHHHHHHHHHHHHHTTTCCG
T ss_pred eceeeccCHHHHhcCCchhhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCCCCC---HHHHHHHHHHHHHHHHhcCCCc
Confidence 455678888887766643 466999999999999999999963 33 8999999999999999887664
Q ss_pred C-ChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 173 L-SKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 173 ~-i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
. +++++++++ .++|||||||+||++||||||++
T Consensus 285 ~~~~~~~~~~~----~~~l~pv~AiiGGi~aQEviK~i 318 (346)
T 1y8q_A 285 DLLPEDFVRYC----FSEMAPVCAVVGGILAQEIVKAL 318 (346)
T ss_dssp GGSCGGGGGSS----CSBCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHh----cCCccHHHHHHHHHHHHHHHHHh
Confidence 3 777776654 89999999999999999999975
No 4
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=96.57 E-value=0.011 Score=53.94 Aligned_cols=64 Identities=11% Similarity=0.042 Sum_probs=49.3
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 145 EYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 145 ~~~~~~~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
..+.+..++++.+.+.+++.....|+. .++...++.++......+.|++|++||+.|||+||++
T Consensus 240 ~~d~d~~~~~~~v~~~a~~~~~~~gi~-~~~~~~~~gv~~~iipaia~t~aiig~l~a~EaiK~l 303 (434)
T 1tt5_B 240 PLDGDDPEHIQWIFQKSLERASQYNIR-GVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIA 303 (434)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHTTCC-CCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHcCCC-ccCHHHHHhHhhccCcccccHHHHHHHHHHHHHHHHH
Confidence 334344677788888888888888765 2455567777777677899999999999999999974
No 5
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=96.04 E-value=0.015 Score=56.34 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=49.7
Q ss_pred CCCCChhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 146 YDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 146 ~~~~~~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
.+.+..++++.+.+.+++.....|+. .++...+..++......+.|++|++||+.|||+||++
T Consensus 612 ~d~~~~~~~~~~~~~~~~~~~~~gi~-~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~e~ik~l 674 (805)
T 2nvu_B 612 LDGDDPEHIQWIFQKSLERASQYNIR-GVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIA 674 (805)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHTTCC-CCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCC-CcCHHHHHHHhcccccccchHHHHHHHHHHHHHHHHH
Confidence 34344677888888888888888765 3455667788887788899999999999999999974
No 6
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=81.15 E-value=0.65 Score=38.74 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.8
Q ss_pred CCCcchHHHHHHHHHHHHHHhhC
Q psy17420 187 GGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 187 ~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
.+.+.|+.+++|+++|+||||.|
T Consensus 187 ~g~~~p~~~~~g~~~A~e~lk~l 209 (251)
T 1zud_1 187 AGVVGPVVGVMGTLQALEAIKLL 209 (251)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999974
No 7
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=78.75 E-value=0.91 Score=37.72 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.8
Q ss_pred cCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 186 GGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 186 ~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
..+-+.|+++++|+++|+|+||.+
T Consensus 189 ~~g~~~~~~~~~g~~~a~e~lk~l 212 (249)
T 1jw9_B 189 EAGVMAPLIGVIGSLQAMEAIKML 212 (249)
T ss_dssp -CCBCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcchHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999974
No 8
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus}
Probab=75.50 E-value=0.1 Score=39.21 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=34.2
Q ss_pred HHHhhhcCCCCCcCCCCCccCcccccccccCCC-CccccCCCCCChhhHHHHHh
Q psy17420 65 RICLINATGLGTECGPVNFCPVEGLLLSSISSG-IADEYDPRTSNARQISEALE 117 (209)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~p~~~~f~sL~~~l~ 117 (209)
.|-+++|+.|+| |.++.|+++.. . + ..+...|.++.|++|+++|.
T Consensus 66 ~i~v~~p~tf~I-~dts~f~~Y~~-----G--G~~tqVK~p~~~~FksL~~~l~ 111 (112)
T 2v31_A 66 EIKVLGPYTFSI-CDTSNFSDYIR-----G--GIVSQVKVPKKISFKSLPASLV 111 (112)
T ss_dssp EEEECSSSEEEE-SCCTTSCCCCE-----E--CEEECCCCCCSCCCCCCSCCSC
T ss_pred EEEEcCCCEEEE-ecccccccccC-----C--eEEEEEeCCeEEcccCHHHHhh
Confidence 356889999999 89999998762 1 3 33556788899999876653
No 9
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=71.44 E-value=1.4 Score=38.01 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=18.6
Q ss_pred cchHHHHHHHHHHHHHHhhC
Q psy17420 190 LHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 190 L~pvaAiiGGiaAQEvIK~i 209 (209)
+.|+..++|++.|+|+||+|
T Consensus 217 l~~~~g~vgslqA~EalK~L 236 (292)
T 3h8v_A 217 LPTTMGVVAGILVQNVLKFL 236 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 88999999999999999974
No 10
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=63.65 E-value=3.2 Score=36.36 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.5
Q ss_pred cCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 186 GGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 186 ~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
..+-+.|+.+++|++.|.|+||+|
T Consensus 290 ~~gv~~~~~~iig~l~a~Ealk~l 313 (353)
T 3h5n_A 290 KPATFAPVNNVAAALCAADVIKFI 313 (353)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHHh
Confidence 466799999999999999999974
No 11
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=55.47 E-value=32 Score=31.79 Aligned_cols=66 Identities=17% Similarity=0.323 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHhCC--CC--CCCCC-----------------CChhhHHHHHHHHHHHHHhhCCCC-CChHHHHH
Q psy17420 123 LIYHVMLRGVDKFYTEHNT--YP--GEYDD-----------------QVEPDIVKLKSCISKLTAEWGCGV-LSKDDYLH 180 (209)
Q Consensus 123 ~~~y~~l~Al~~F~~~~gr--~P--g~~~~-----------------~~~~D~~~l~~i~~~i~~~~~~~~-~i~e~~i~ 180 (209)
...+++.+|+.+|.+++|. +| |...+ ....|.+++...+..++.+.+.+. .++.+.++
T Consensus 299 ~~Fwil~~alk~F~~~~~~g~lPl~g~ipDm~s~t~~Y~~lq~iy~~ka~~D~~~v~~~v~~~~~~~~~~~~~i~~~~i~ 378 (531)
T 1tt5_A 299 PSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELK 378 (531)
T ss_dssp CHHHHHHHHHHHHHHTTTTTSCCCCCCCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSSSCHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCCCCCCCCccCccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHH
Confidence 4467888999999999864 34 32221 113456666677778888888754 58899999
Q ss_pred HHHHhcCC
Q psy17420 181 EICRYGGG 188 (209)
Q Consensus 181 e~~r~~~~ 188 (209)
.+|+....
T Consensus 379 ~f~kn~~~ 386 (531)
T 1tt5_A 379 LLCSNSAF 386 (531)
T ss_dssp HHHHTGGG
T ss_pred HHHhchhh
Confidence 99986543
No 12
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=50.82 E-value=6.8 Score=34.47 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=26.4
Q ss_pred CceeeecccCCCcchhhHHHHHHHhhhcCCCCC
Q psy17420 44 FIHVIRGTLWGDHGQAALESARICLINATGLGT 76 (209)
Q Consensus 44 ~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (209)
+|+++++|.|+..|+..|..+|+.|+-.-|+|.
T Consensus 15 nl~lm~wRll~~~g~~kL~~~~VlIvGaGGlGs 47 (340)
T 3rui_A 15 NLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGC 47 (340)
T ss_dssp HHHHHHHHTCTTCCHHHHHTCEEEEECCSHHHH
T ss_pred HHHHHHHhhcchhhHHHHhCCEEEEECCCHHHH
Confidence 466778888998888888888888887776664
No 13
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=47.33 E-value=8.2 Score=28.29 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhhcc
Q psy17420 4 QAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNAS 43 (209)
Q Consensus 4 KA~~D~~~v~~~v~~~~~~~g~~~~~I~~~~I~~FCKNa~ 43 (209)
+-+-+++.|.++|..+- -..+...|...-+.-||+|+-
T Consensus 10 ~~eleAAaFRrL~~HL~--~r~DVQNIDLMnLAGFCRNCL 47 (104)
T 3fyb_A 10 KTEMEAAAFRHLLRHLD--EHKDVQNIDLMIQADFCRNCL 47 (104)
T ss_dssp HHHHHHHHHHHHHHHHH--TCTTSCHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hCcchhHHHHHHHHHHHHHHH
Confidence 34556777887776552 223346788889999999973
No 14
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=43.07 E-value=18 Score=24.73 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCC---CCCCCcHHHHHHHHh
Q psy17420 14 RRAQQLLHQLGQ---PSSAITEAQVKLFCR 40 (209)
Q Consensus 14 ~~v~~~~~~~g~---~~~~I~~~~I~~FCK 40 (209)
.+.-.-|+.||. ++++.|+++|..|.+
T Consensus 31 ~iql~RL~kLGI~ktdP~~LT~eEi~~FaR 60 (71)
T 2eo2_A 31 EIQLSRLKKLGIHKTDPSTLTEEEVRKFAR 60 (71)
T ss_dssp HHHHHHHHHHTCCCCSTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcccCCHHHHhhcee
Confidence 344466788887 358899999999987
No 15
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=39.38 E-value=12 Score=27.43 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhhcc
Q psy17420 4 QAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNAS 43 (209)
Q Consensus 4 KA~~D~~~v~~~v~~~~~~~g~~~~~I~~~~I~~FCKNa~ 43 (209)
+-+-+++.|.++|..+-++. +...|...-+.-||+|+-
T Consensus 11 ~~eleAAaFRRLv~HL~~r~--DVQNIDLMnLAGFCRNCL 48 (105)
T 2o35_A 11 RTAFEAAVFRRLLEHLRERS--DVQNIDLMNLAGFCRNCL 48 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--TSCHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCc--chhHHHHHHHHHHHHHHH
Confidence 34456777887776664432 346788899999999973
No 16
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=37.13 E-value=1.3 Score=38.84 Aligned_cols=41 Identities=34% Similarity=0.649 Sum_probs=34.6
Q ss_pred CCcHHHHHHHHhhccCceeeecccCCCcchhhHHHHHHHhhhcCCCCCc
Q psy17420 29 AITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTE 77 (209)
Q Consensus 29 ~I~~~~I~~FCKNa~~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (209)
.+++++..+|-|+.+ .||..||..|+.++|+|+..-|+|.+
T Consensus 10 ~l~~~~~~rY~Rq~~--------l~G~~~q~~L~~~~VlivG~GGlG~~ 50 (346)
T 1y8q_A 10 GISEEEAAQYDRQIR--------LWGLEAQKRLRASRVLLVGLKGLGAE 50 (346)
T ss_dssp CCCHHHHHHHHHHHH--------HHCHHHHHHHHTCEEEEECCSHHHHH
T ss_pred cCCHHHHHHHHHHHH--------hhCHHHHHHHhCCeEEEECCCHHHHH
Confidence 678999998888743 28999999999999999999888754
No 17
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=33.62 E-value=18 Score=34.45 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=25.8
Q ss_pred CceeeecccCCCcchhhHHHHHHHhhhcCCCCC
Q psy17420 44 FIHVIRGTLWGDHGQAALESARICLINATGLGT 76 (209)
Q Consensus 44 ~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (209)
+|++++.|.|++.|+..|..+|+.|+-.-|+|.
T Consensus 307 nlklm~wRllp~~g~ekL~~arVLIVGaGGLGs 339 (615)
T 4gsl_A 307 NLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGC 339 (615)
T ss_dssp HHHHHHHHTCTTCCHHHHHTCEEEEECCSHHHH
T ss_pred hhHHHHHhhcchhhHHHHhCCeEEEECCCHHHH
Confidence 356677888888888888888888887777664
No 18
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=27.72 E-value=25 Score=33.23 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=24.3
Q ss_pred CceeeecccCCCcchhhHHHHHHHhhhcCCCCC
Q psy17420 44 FIHVIRGTLWGDHGQAALESARICLINATGLGT 76 (209)
Q Consensus 44 ~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (209)
+|+++|++.||..|+..|..+|+.||-.-|+|.
T Consensus 308 nL~lmrwrll~~~gq~kL~~~kVLIVGaGGLGs 340 (598)
T 3vh1_A 308 NLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGC 340 (598)
T ss_dssp HHHHHHHHHCTTCCHHHHHTCEEEEECCSHHHH
T ss_pred hhhhhhhhccchhhHHHHhCCeEEEECCCHHHH
Confidence 345567778888888888888888877766653
No 19
>2kep_A General secretion pathway protein G; methylation, transport, transport protein; NMR {Pseudomonas aeruginosa}
Probab=26.37 E-value=94 Score=22.56 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCC
Q psy17420 124 IYHVMLRGVDKFYTEHNTYPGE 145 (209)
Q Consensus 124 ~~y~~l~Al~~F~~~~gr~Pg~ 145 (209)
.+..+-.||+.|+..+|+||..
T Consensus 15 ~i~~l~~Al~~Y~lD~G~YPtt 36 (110)
T 2kep_A 15 DIKAIAAALDMYKLDNFAYPST 36 (110)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCT
T ss_pred HHHHHHHHHHHHHHHhCCCCCc
Confidence 3555667999999999999975
No 20
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=25.45 E-value=4.1e+02 Score=25.14 Aligned_cols=54 Identities=11% Similarity=0.042 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420 155 VKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209 (209)
Q Consensus 155 ~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i 209 (209)
+-+.+.++--...++++. .+.--++.++---=--+..+.|++.|++.-|++|++
T Consensus 353 dFV~aaaNlRA~~y~I~~-~~~~~~K~iAG~IIPAIATTnAiVaGl~~lE~~Kvl 406 (640)
T 1y8q_B 353 DFVTSAANLRMHIFSMNM-KSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKIL 406 (640)
T ss_dssp HHHHHHHHHHHHHTTCCC-CCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCc-CCHHHHHHHhCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 333333444444456543 333335555544444577788999999999999974
No 21
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=25.44 E-value=43 Score=21.74 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=10.5
Q ss_pred HHHHHHhCCCCC
Q psy17420 133 DKFYTEHNTYPG 144 (209)
Q Consensus 133 ~~F~~~~gr~Pg 144 (209)
..|..+|||.|+
T Consensus 18 ~~F~~~~GRkP~ 29 (56)
T 2kmu_A 18 RAFRRQRGRRPS 29 (56)
T ss_dssp HHHHHHTCSCCC
T ss_pred HHHHHHhCCCCC
Confidence 568889999998
No 22
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=22.71 E-value=3.6e+02 Score=24.14 Aligned_cols=68 Identities=10% Similarity=0.161 Sum_probs=39.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcc
Q psy17420 112 ISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELH 191 (209)
Q Consensus 112 L~~~l~~p~s~~~~y~~l~Al~~F~~~~gr~Pg~~~~~~~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~ 191 (209)
+.+..+...+....|+++ +|.+|. .+..+.|.+ ++.... .+++++ .++.+..-...|
T Consensus 82 I~dLa~~~~feevayLLl---------~G~LPt------~~el~~f~~---~l~~~~----~lp~~~-~~~i~~~p~~~h 138 (427)
T 3msu_A 82 IEEWTQKSNYRTLCYALI---------YGELPT------DEQVKSFRQ---EIINKM----PVCEHV-KAAIAAMPQHTH 138 (427)
T ss_dssp HHHHHHHCCHHHHHHHHH---------HSSCCC------HHHHHHHHH---HHHHHC----CCCHHH-HHHHHHSCTTCC
T ss_pred HHHHhccCCHHHHHHHHH---------cCcCCC------HHHHHHHHH---HHHHcc----CCCHHH-HHHHHhCCCCCC
Confidence 333334444555566554 688986 444444433 443332 244554 446777777899
Q ss_pred hHHHHHHHHHH
Q psy17420 192 AVSSFLGGCAA 202 (209)
Q Consensus 192 pvaAiiGGiaA 202 (209)
||..+..++.+
T Consensus 139 PM~~L~~~v~a 149 (427)
T 3msu_A 139 PMSSLIAGVNV 149 (427)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887765
No 23
>3brj_A Mannitol operon repressor; APC85967.1, MTLR, vibrio parahaem RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.75A {Vibrio parahaemolyticus rimd 2210633} SCOP: a.285.1.1
Probab=20.57 E-value=72 Score=25.43 Aligned_cols=41 Identities=10% Similarity=0.099 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhhccCcee
Q psy17420 5 AGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHV 47 (209)
Q Consensus 5 A~~D~~~v~~~v~~~~~~~g~~~~~I~~~~I~~FCKNa~~L~v 47 (209)
--+|.+.|.+ +++.+..-+. ...+++++|-.||+|.+.+..
T Consensus 87 ~Y~Die~f~~-lre~ln~d~~-e~~FtDd~I~~~i~~l~~v~~ 127 (175)
T 3brj_A 87 IYHDIEDIIK-LKNHLNSDAS-DYEFTDPNILEPIKKLHLVKK 127 (175)
T ss_dssp HHHHHHHHHH-HHHHHHTCSS-CCCTTSHHHHHHHTTSHHHHH
T ss_pred HHHhHHHHHH-HHHHHhcCCC-CCCCCCHHHHHHHHHHHHHHh
Confidence 4578888876 4555544333 357899999999999999864
Done!