RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17420
(209 letters)
>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit
APPBP1. APPBP1 is part of the heterodimeric activating
enzyme (E1), specific for the Rub family of
ubiquitin-like proteins (Ubls). E1 enzymes are part of a
conjugation cascade to attach Ub or Ubls, covalently to
substrate proteins consisting of activating (E1),
conjugating (E2), and/or ligating (E3) enzymes. E1
activates ubiquitin(-like) by C-terminal adenylation,
and subsequently forms a highly reactive thioester bond
between its catalytic cysteine and Ubls C-terminus. E1
also associates with E2 and promotes ubiquitin transfer
to the E2's catalytic cysteine. Post-translational
modification by Rub family of ubiquitin-like proteins
(Ublps) activates SCF ubiquitin ligases and is involved
in cell cycle control, signaling and embryogenesis.
ABPP1 contains part of the adenylation domain.
Length = 425
Score = 66.2 bits (162), Expect = 7e-13
Identities = 20/51 (39%), Positives = 37/51 (72%)
Query: 1 YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGT 51
YR++A +DA + + +++L LG+ +I++ ++KLFC+NA+F+ VIRG
Sbjct: 330 YREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLFCKNAAFLRVIRGR 380
Score = 58.1 bits (141), Expect = 4e-10
Identities = 20/26 (76%), Positives = 23/26 (88%)
Query: 52 LWGDHGQAALESARICLINATGLGTE 77
LWG+HGQAALESA +CL+NAT GTE
Sbjct: 9 LWGEHGQAALESAHVCLLNATATGTE 34
Score = 49.2 bits (118), Expect = 3e-07
Identities = 33/147 (22%), Positives = 55/147 (37%), Gaps = 39/147 (26%)
Query: 93 SISSGIADEY-DPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHN---TYPGE--- 145
I S + + + D R N S + +M R + +F E N PG
Sbjct: 265 KIPSSVEEIFNDDRCENLTSQSS---------SFWIMARALKEFVAEENGLLPLPGTLPD 315
Query: 146 --------------YDDQVEPDIVKLKSCISKLTAEWGCGVLS-KDDYLHEICR------ 184
Y ++ E D +++ + ++ G S D + C+
Sbjct: 316 MTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLFCKNAAFLR 375
Query: 185 --YGGGELHAVSSFLGGCAAQEVIKIL 209
G H +S+F+GG AAQEVIK++
Sbjct: 376 VIRGRSLEHNISAFMGGIAAQEVIKLI 402
>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat
1-like. E1, a highly conserved small protein present
universally in eukaryotic cells, is part of cascade to
attach ubiquitin (Ub) covalently to substrate proteins.
This cascade consists of activating (E1), conjugating
(E2), and/or ligating (E3) enzymes and then targets them
for degradation by the 26S proteasome. E1 activates
ubiquitin by C-terminal adenylation, and subsequently
forms a highly reactive thioester bond between its
catalytic cysteine and ubiquitin's C-terminus. The E1
also associates with E2 and promotes ubiquitin transfer
to the E2's catalytic cysteine. A set of novel molecules
with a structural similarity to Ub, called Ub-like
proteins (Ubls), have similar conjugation cascades. In
contrast to ubiquitin-E1, which is a single-chain
protein with a weakly conserved two-fold repeat, many of
the Ubls-E1are a heterodimer where each subunit
corresponds to one half of a single-chain E1. This CD
represents the family homologous to the first repeat of
Ub-E1.
Length = 198
Score = 51.7 bits (124), Expect = 2e-08
Identities = 36/184 (19%), Positives = 63/184 (34%), Gaps = 42/184 (22%)
Query: 52 LWGDHGQAALESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQ 111
LWGD Q L SA++ +I A LG E + L+L+ I S D R +
Sbjct: 8 LWGDEAQNKLRSAKVLIIGAGALGAEI-------AKNLVLAGIDS--ITIVDHRLVSTED 58
Query: 112 IS----------EALENGDGLLIYHVMLRGVDKFYT-EHNTYPGEYDDQVEPDIVKLKSC 160
+ + N L+ ++ +D + ++ +
Sbjct: 59 LGSNFFLDAEVSNSGMNRAAASYEF--LQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTL 116
Query: 161 ISKLTAEWGCGVLSKDDYLHEICR-----------YG-GGELH---AVSSFLGGCAAQEV 205
+ + ++++CR YG G +++FLGG AQE
Sbjct: 117 VIAT-----EENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFDFPIAAFLGGVVAQEA 171
Query: 206 IKIL 209
IK +
Sbjct: 172 IKSI 175
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1. This model
represents the full length, over a thousand amino acids,
of a multicopy family of eukaryotic proteins, many of
which are designated ubiquitin-activating enzyme E1.
Members have two copies of the ThiF family domain
(pfam00899), a repeat found in ubiquitin-activating
proteins (pfam02134), and other regions.
Length = 1008
Score = 46.4 bits (110), Expect = 4e-06
Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 104 PRTSNARQISEALENGDGL----------LIYHVMLRGVDKFYTEHNTYPGEYDDQVEPD 153
P+T + + E L++ L H + +D+F +++ P Q +
Sbjct: 252 PKTVFFKSLREQLKDPKCLIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEE 311
Query: 154 IVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIK 207
++KL + IS+ E V +H + G L +++ +GG +QEV+K
Sbjct: 312 LLKLATSISETLEEKVPDV--DAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLK 363
>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit
Aos1. Aos1 is part of the heterodimeric activating
enzyme (E1), specific for the SUMO family of
ubiquitin-like proteins (Ubls). E1 enzymes are part of
a conjugation cascade to attach Ub or Ubls, covalently
to substrate proteins consisting of activating (E1),
conjugating (E2), and/or ligating (E3) enzymes. E1
activates ubiquitin by C-terminal adenylation, and
subsequently forms a highly reactive thioester bond
between its catalytic cysteine and Ubls C-terminus. The
E1 also associates with E2 and promotes ubiquitin
transfer to the E2's catalytic cysteine.
Post-translational modification by SUMO family of
ubiquitin-like proteins (Ublps) is involved in cell
division, nuclear transport, the stress response and
signal transduction. Aos1 contains part of the
adenylation domain.
Length = 197
Score = 35.3 bits (82), Expect = 0.011
Identities = 17/30 (56%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 48 IRGTLWGDHGQAALESARICLINATGLGTE 77
IR LWG Q L SARI LI GLG E
Sbjct: 8 IR--LWGLEAQKRLRSARILLIGLKGLGAE 35
Score = 26.5 bits (59), Expect = 8.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 193 VSSFLGGCAAQEVIKIL 209
V++ +GG AQ+VI L
Sbjct: 158 VAAVVGGILAQDVINAL 174
>gnl|CDD|169387 PRK08335, PRK08335, translation initiation factor IF-2B subunit
alpha; Validated.
Length = 275
Score = 30.1 bits (68), Expect = 0.61
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 20 LHQLGQPSSAITEAQVKLFCRNAS 43
L LG IT+AQ+ LF + A+
Sbjct: 156 LEFLGIEFEVITDAQLGLFAKEAT 179
>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1.
E1, a highly conserved small protein present universally
in eukaryotic cells, is part of cascade to attach
ubiquitin (Ub) covalently to substrate proteins. This
cascade consists of activating (E1), conjugating (E2),
and/or ligating (E3) enzymes and then targets them for
degradation by the 26S proteasome. E1 activates
ubiquitin by C-terminal adenylation, and subsequently
forms a highly reactive thioester bond between its
catalytic cysteine and ubiquitin's C-terminus. E1 also
associates with E2 and promotes ubiquitin transfer to
the E2's catalytic cysteine. Ubiquitin-E1 is a
single-chain protein with a weakly conserved two-fold
repeat. This CD represents the first repeat of Ub-E1.
Length = 286
Score = 29.9 bits (68), Expect = 0.70
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 190 LHAVSSFLGGCAAQEVIK 207
L +++F GG AAQEV+K
Sbjct: 244 LSPMAAFFGGLAAQEVLK 261
>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB;
Validated.
Length = 376
Score = 29.2 bits (66), Expect = 1.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 54 GDHGQAALESARICLINATGLGTECG 79
G+ GQ L AR+ LI A GLG+
Sbjct: 126 GEEGQRRLLEARVLLIGAGGLGSPAA 151
>gnl|CDD|238980 cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis.
Length = 179
Score = 28.6 bits (65), Expect = 1.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 158 KSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLG 198
KS ++KL E G V+ D HE+ GG L A+ G
Sbjct: 12 KSTVAKLLKELGIPVIDADKIAHEVYEPGGPALQAIVEAFG 52
>gnl|CDD|224770 COG1857, COG1857, CRISPR system related protein [Defense
mechanisms].
Length = 334
Score = 28.2 bits (63), Expect = 2.8
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 126 HVMLRGVDKFYTEH---NTYPGEYDDQVEPDIVKLKSCISKL 164
V + + ++ GE D +E D+ +L+ L
Sbjct: 247 VVEVMELVVSVSKKPFPVDSVGEVDGYIELDVERLEEAKEDL 288
>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB;
Validated.
Length = 355
Score = 27.5 bits (61), Expect = 4.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 53 WGDHGQAALESARICLINATGLGT 76
G GQ +L A++ +I A GLG+
Sbjct: 18 IGQQGQQSLFDAKVAVIGAGGLGS 41
>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in
molybdopterin and thiamine biosynthesis family 2
[Coenzyme metabolism].
Length = 254
Score = 27.4 bits (61), Expect = 5.2
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 51 TLWGDH--GQAALESARICLINATGLGTE 77
L G GQ L+ +R+ ++ A GLG+
Sbjct: 16 LLPGIGGEGQQKLKDSRVLVVGAGGLGSP 44
>gnl|CDD|224611 COG1697, COG1697, DNA topoisomerase VI, subunit A [DNA replication,
recombination, and repair].
Length = 356
Score = 27.3 bits (61), Expect = 5.7
Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 105 RTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKL 164
I E LE G LR + +Y + ++DDQ E D + I +
Sbjct: 75 TLLMLDFIKELLELGK-----TSTLR--EIYYISKHVEVFKFDDQSESDRL-----IEDI 122
Query: 165 TAEWGC-----GVLSKDDYL----HEICRYGGGELHAVSSFLGGCA 201
G G+ ++ L I G E+ A GG
Sbjct: 123 EVTLGLSREDLGIRPEEKGLVYGPLRIREEGEDEIDASKLGGGGYL 168
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.421
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,450,164
Number of extensions: 946301
Number of successful extensions: 823
Number of sequences better than 10.0: 1
Number of HSP's gapped: 822
Number of HSP's successfully gapped: 24
Length of query: 209
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 116
Effective length of database: 6,812,680
Effective search space: 790270880
Effective search space used: 790270880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)