RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17420
(209 letters)
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Length = 531
Score = 136 bits (343), Expect = 6e-38
Identities = 72/209 (34%), Positives = 109/209 (52%), Gaps = 45/209 (21%)
Query: 1 YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
YR++A +DA + +LL +GQ +I+E ++KL C N++F+ V+R
Sbjct: 343 YREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRC---------- 392
Query: 61 LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
+A+EY T N +I +++N D
Sbjct: 393 -----------------------------------RSLAEEYGLDTINKDEIISSMDNPD 417
Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
++ ++MLR VD+F+ + YPG + QVE DI KLKSC++ E+G V+ KDDY+H
Sbjct: 418 NEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVH 477
Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
E CRYG E H +++FLGG AAQEVIKI+
Sbjct: 478 EFCRYGAAEPHTIAAFLGGAAAQEVIKII 506
Score = 51.2 bits (122), Expect = 5e-08
Identities = 21/27 (77%), Positives = 22/27 (81%)
Query: 52 LWGDHGQAALESARICLINATGLGTEC 78
LWGDHGQ ALESA +CLINAT GTE
Sbjct: 21 LWGDHGQEALESAHVCLINATATGTEI 47
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL,
ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A*
3kyc_A* 3kyd_A*
Length = 346
Score = 68.3 bits (167), Expect = 6e-14
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 125 YHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICR 184
+ +L+ + KF T+ P D E D L + + G +S D + R
Sbjct: 239 DYFLLQVLLKFRTDKGRDPSS--DTYEEDSELLLQIRNDVLDSLG---ISPDLLPEDFVR 293
Query: 185 YGGGELHAVSSFLGGCAAQEVIKIL 209
Y E+ V + +GG AQE++K L
Sbjct: 294 YCFSEMAPVCAVVGGILAQEIVKAL 318
Score = 50.9 bits (122), Expect = 6e-08
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 25 QPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTE 77
+ I+E + + R IR LWG Q L ++R+ L+ GLG E
Sbjct: 6 EAGGGISEEEAAQYDRQ------IR--LWGLEAQKRLRASRVLLVGLKGLGAE 50
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 44.8 bits (105), Expect = 1e-05
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 104 PRTSNARQISEALENGDGLL----------IYHVMLRGVDKFYTEHN-TYPGEYDDQVEP 152
PR + + + + L N + + H+ + + +F HN P +D+
Sbjct: 252 PRKISFKSLKQQLSNPEFVFSDFAKFDRAAQLHLGFQALHQFAVRHNGELPRTMNDEDAN 311
Query: 153 DIVKL-KSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209
+++KL + G GV +D + E+ G++ V +F GG AQEV+K
Sbjct: 312 ELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLKAC 369
Score = 33.3 bits (75), Expect = 0.050
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 52 LWGDHGQAALESARICLINATGLGTE 77
+ G ++++ + ++ GLG E
Sbjct: 16 VLGKEAMLKMQTSNVLILGLKGLGVE 41
Score = 26.7 bits (58), Expect = 6.7
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 52 LWGDHGQAALESARICLINATGLGTE 77
++G Q + ++++ L+ + +G E
Sbjct: 414 VFGLDFQKKIANSKVFLVGSGAIGCE 439
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.003
Identities = 36/266 (13%), Positives = 69/266 (25%), Gaps = 101/266 (37%)
Query: 8 DADVIYRRAQQLLHQLGQPSSA-----------------ITE-AQVKLFCRN-----ASF 44
DA+ ++ + +L L PS+ + + A + +
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 45 IHVIRGTLWGDHGQ---AAL------------ESARICLINATGLGTEC----GPVNFCP 85
++G H Q A+ S R + +G C + P
Sbjct: 264 RSYLKGAT--GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 86 -------------------VEGLLLSSISSGIADEYDPRTSNARQISEALENGD------ 120
+ L + + ++ + +Q+ +L NG
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYV-NKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 121 G----LLIYHVMLR------GVD-----------KFYTE--------HNTYPGEYDDQVE 151
G L ++ LR G+D KF H+ D +
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 152 PDIVKLKSCISKLTAEWGCGVLSKDD 177
D+VK + + V D
Sbjct: 441 KDLVKNNVSFNA--KDIQIPVYDTFD 464
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.33
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 29/56 (51%)
Query: 17 QQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINAT 72
+Q L +L +A +KL+ A +SA I AT
Sbjct: 19 KQALKKL--------QASLKLY---------------------ADDSAPALAIKAT 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.58
Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 36/141 (25%)
Query: 7 RDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARI 66
+ + Q+LL+Q+ ++ ++ + R S +R L +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-------KSKPYEN 245
Query: 67 CLINATGLGTECGPVNFCPVEGLLLSSI-SSGIADEYDPR-----TSNARQISEALENGD 120
CL L+L ++ ++ + ++ T+ +Q+++ L
Sbjct: 246 CL--------------------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL---S 282
Query: 121 GLLIYHVMLRGVDKFYTEHNT 141
H+ L T
Sbjct: 283 AATTTHISLDHHSMTLTPDEV 303
Score = 29.4 bits (65), Expect = 0.89
Identities = 27/172 (15%), Positives = 51/172 (29%), Gaps = 35/172 (20%)
Query: 35 VKLF---C------RNASFIHVIRGT----LWGDHGQAAL---ESARICLINATGLGTEC 78
F C R + + DH L E + L+ +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQD 317
Query: 79 GPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFY-T 137
P LS I+ I D N + + N D L ++ ++
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLA-TWDNWKHV-----NCDKLT--TIIESSLNVLEPA 369
Query: 138 EHNTYPGEYDD-QVEPDIVKLKSCISKLTAEWGCGVLSKD--DYLHEICRYG 186
E+ +D V P + + + L+ W V+ D ++++ +Y
Sbjct: 370 EYRKM---FDRLSVFPPSAHIPTIL--LSLIW-FDVIKSDVMVVVNKLHKYS 415
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family
5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP:
c.1.8.3 PDB: 1tvp_A*
Length = 293
Score = 27.5 bits (61), Expect = 3.1
Identities = 4/44 (9%), Positives = 11/44 (25%), Gaps = 9/44 (20%)
Query: 127 VMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGC 170
G F++ ++ ++K E+
Sbjct: 19 TSFAGPSLFWSNTGWGAEKFYT---------AETVAKAKTEFNA 53
>4epz_A Transcription anti-terminator antagonist UPXZ; transcription
regulation, antagonist of transcription anti-
termination; HET: MSE; 1.68A {Bacteroides uniformis
atcc 8492}
Length = 162
Score = 26.8 bits (59), Expect = 4.4
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 9 ADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICL 68
A + R A +L++ L S I + FCR + +L+ + E +CL
Sbjct: 9 ALELQRMAHELMY-LDTNGSPIYSDE---FCRLNKEVLTRSDSLFSEQSSDIEEEGNLCL 64
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 26.4 bits (58), Expect = 6.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 54 GDHGQAALESARICLINATGLGTE 77
+ Q L++ ++ +I A GLG E
Sbjct: 31 TESLQFLLDTCKVLVIGAGGLGCE 54
>3p6i_A De novo designed beta-trefoil architecture with S primary
structure; de novo protein; HET: SO4; 1.32A {Synthetic}
PDB: 3ogf_A
Length = 142
Score = 25.4 bits (55), Expect = 9.6
Identities = 7/61 (11%), Positives = 15/61 (24%), Gaps = 5/61 (8%)
Query: 7 RDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHV-----IRGTLWGDHGQAAL 61
+ V R + H Q S + ++ + + GT
Sbjct: 16 KGGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQF 75
Query: 62 E 62
+
Sbjct: 76 Q 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.421
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,191,065
Number of extensions: 183775
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 21
Length of query: 209
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 120
Effective length of database: 4,216,824
Effective search space: 506018880
Effective search space used: 506018880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)