RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17420
         (209 letters)



>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
           protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 529

 Score =  161 bits (408), Expect = 2e-47
 Identities = 72/209 (34%), Positives = 109/209 (52%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V+R           
Sbjct: 341 YREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRS-------- 392

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                                +A+EY   T N  +I  +++N D
Sbjct: 393 -------------------------------------LAEEYGLDTINKDEIISSMDNPD 415

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
             ++ ++MLR VD+F+ +   YPG  + QVE DI KLKSC++    E+G  V+ KDDY+H
Sbjct: 416 NEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVH 475

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CRYG  E H +++FLGG AAQEVIKI+
Sbjct: 476 EFCRYGAAEPHTIAAFLGGAAAQEVIKII 504



 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 9/63 (14%)

Query: 52  LWGDHGQAALESARICLINATGLGTECGPVNFCPVEGLLLSSISS-GIADEYDPRTSN-A 109
           LWGDHGQ ALESA +CLINAT  GTE        ++ L+L  I S  I D       +  
Sbjct: 14  LWGDHGQEALESAHVCLINATATGTEI-------LKNLVLPGIGSFTIIDGNQVSGEDAG 66

Query: 110 RQI 112
              
Sbjct: 67  NNF 69


>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 426

 Score = 33.1 bits (75), Expect = 0.017
 Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 24/139 (17%)

Query: 54  GDHGQAALESARICLINATGLGTECGPVNFCPVEGLLLSSISS-GIADEYDPRTSN-ARQ 111
            +  Q  L++ ++ +I A GLG E        ++ L LS      + D      SN  RQ
Sbjct: 28  TESLQFLLDTCKVLVIGAGGLGCEL-------LKNLALSGFRQIHVIDMDTIDVSNLNRQ 80

Query: 112 ISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCG 171
                    G     V    ++                V P   K++        ++   
Sbjct: 81  FL-FRPKDIGRPKAEVAAEFLNDRVPNC---------NVVPHFNKIQDFNDTFYRQFHII 130

Query: 172 VLSKDD-----YLHEICRY 185
           V   D      +++ +   
Sbjct: 131 VCGLDSIIARRWINGMLIS 149


>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein
          MoeB {Escherichia coli [TaxId: 562]}
          Length = 247

 Score = 32.3 bits (72), Expect = 0.026
 Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 28 SAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTEC 78
          + +++ ++  + R       I    +   GQ AL+ +R+ ++   GLG   
Sbjct: 1  AELSDQEMLRYNRQ------IILRGFDFDGQEALKDSRVLIVGLGGLGCAA 45


>d2atza1 d.264.1.3 (A:3-178) Hypothetical protein HP0184
          {Helicobacter pylori [TaxId: 210]}
          Length = 176

 Score = 26.0 bits (57), Expect = 2.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 3  DQAGRDADVIYRRAQQLLHQLG 24
          D  GR+ +  Y +AQ LL + G
Sbjct: 75 DYNGRNPERFYHKAQLLLREEG 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 769,594
Number of extensions: 33363
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 6
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)