RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17422
(512 letters)
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Length = 531
Score = 302 bits (773), Expect = 9e-97
Identities = 165/381 (43%), Positives = 232/381 (60%), Gaps = 44/381 (11%)
Query: 102 FQSFHMVISTNCPILSLPS-FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLM 160
SF ++ + FFL SIGK+RAE A + L ELN D G FV+E+P+ L+
Sbjct: 56 IGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLL 115
Query: 161 ANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIE 220
NDP+FF F +V++T LPE+T + L+ LW+ IPLL CR+YG +G +R+ I EH +IE
Sbjct: 116 DNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIE 175
Query: 221 SHPDNTNPDLRLDKPWPSLIQYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQD 280
SHPDN DLRLDKP+P L ++ S DLD +E KDH H P++VI+ KYL W S+ N +
Sbjct: 176 SHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGR- 234
Query: 281 LPKNYKEKQNLRELIRSGIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDE 340
+PK YKEK++ R+LIR GI K E+
Sbjct: 235 IPKTYKEKEDFRDLIRQGILKPED------------------------------------ 258
Query: 341 NGIPLSEENFEEAMKAVNFALIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFV 400
EENFEEA+K VN AL T +PSS+ I ND+ C+N+T ++ FWILA+A+K+FV
Sbjct: 259 ------EENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFV 312
Query: 401 DNEGNGNLPLRGSLPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAI 460
EG GNLP+RG++PDM AD+ +YI LQ +YR++A +DA + +LL +GQ +I
Sbjct: 313 AKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESI 372
Query: 461 TEAQVKLFCRNASFIHVNESK 481
+E ++KL C N++F+ V +
Sbjct: 373 SEKELKLLCSNSAFLRVVRCR 393
Score = 164 bits (416), Expect = 8e-45
Identities = 72/118 (61%), Positives = 89/118 (75%)
Query: 1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
LWGDHGQ ALESA +CLINAT GTEILK+LVLPG+GSFTIIDG ++S +D G NFFL
Sbjct: 21 LWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQR 80
Query: 61 DSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSL 118
SIGK+RAE A + L ELN D G FV+E+P+ L+ NDP+FF F +V++T P +
Sbjct: 81 SSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTS 138
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL,
ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A*
3kyc_A* 3kyd_A*
Length = 346
Score = 151 bits (383), Expect = 1e-41
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
LWG Q L ++R+ L+ GLG EI K+L+L GV T++D E+++ +D G F +
Sbjct: 25 LWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRT 84
Query: 61 DSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCP 114
S+G++RAE + + LNP E+ + +FF F V T C
Sbjct: 85 GSVGRNRAEASLERAQNLNPMVDVKVDTED---IEKKPESFFTQFDAVCLTCCS 135
Score = 127 bits (321), Expect = 6e-33
Identities = 34/200 (17%), Positives = 70/200 (35%), Gaps = 7/200 (3%)
Query: 121 FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPE 180
F + S+G++RAE + + LNP E+ + +FF F V T
Sbjct: 80 FLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTED---IEKKPESFFTQFDAVCLTCCSR 136
Query: 181 TTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLI 240
++++ + +I +G+ G + EH +E ++ +
Sbjct: 137 DVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKR 196
Query: 241 QYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIR 300
+DS + ++ K P L W S+ L + + L+ L++
Sbjct: 197 AKLDSSETTMVKKKVVFC-PVKEALEVD---WSSEKAKAALKRTTSDYFLLQVLLKFRTD 252
Query: 301 KDENGIPLSEENFEEAMKAV 320
K + + E E + +
Sbjct: 253 KGRDPSSDTYEEDSELLLQI 272
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 114 bits (286), Expect = 6e-27
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
+ G ++++ + ++ GLG EI K++VL GV S T+ D E + DL T FFL
Sbjct: 16 VLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTE 75
Query: 61 DSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNC 113
IG+ R +V L ELN + +D +D F +V++T+
Sbjct: 76 KDIGQKRGDVTRAKLAELNAYVPVNVLDSL------DDVTQLSQFQVVVATDT 122
Score = 91.8 bits (227), Expect = 1e-19
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGV-----GSFTIIDGEKISEQDLGTN 55
++G Q + ++++ L+ + +G E+LK+ L G+ G + D + I + +L
Sbjct: 414 VFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQ 473
Query: 56 FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQV----LMANDPNFFQSFHMVIST 111
F +GK+++EVA + + +NPD +G + +V + +F++S V +
Sbjct: 474 FLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNA 533
Score = 71.4 bits (174), Expect = 3e-13
Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 121 FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNL-P 179
FFL IG+ R +V L ELN + +D +D F +V++T+
Sbjct: 71 FFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDSL------DDVTQLSQFQVVVATDTVS 124
Query: 180 ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIE 220
+++++ S I ++ + G G+ + + + +
Sbjct: 125 LEDKVKINEFCHSSGIRFISSETRGLFGNTFVDLGDEFTVL 165
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 80.7 bits (199), Expect = 1e-16
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 3 GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDS 62
+ Q L++ ++ +I A GLG E+LK+L L G +ID + I +L F
Sbjct: 31 TESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKD 90
Query: 63 IGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVIS 110
IG+ +AEVA + L + P+C V + + + F++ FH+++
Sbjct: 91 IGRPKAEVAAEFLNDRVPNCN---VVPHFNKIQDFNDTFYRQFHIIVC 135
Score = 43.4 bits (102), Expect = 1e-04
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 128 IGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVIS--TNLPETTLI- 184
IG+ +AEVA + L + P+C V + + + F++ FH+++ ++ I
Sbjct: 91 IGRPKAEVAAEFLNDRVPNCN---VVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWIN 147
Query: 185 ---------ELSKTLWSLNIPLLACRSYGFIGSIRLQISEHT 217
E S +PL+ + GF G+ R+ + T
Sbjct: 148 GMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMT 189
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 74.8 bits (183), Expect = 2e-14
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 3 GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDS 62
A+ R+ ++ A G+G E+LK+LVL G +ID + I +L F
Sbjct: 8 PRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKH 67
Query: 63 IGKSRAEVATQLLLELNPDC-----QGDFVDENPQVLMANDPNFFQSFHMVIS 110
+G+S+A+VA + +L+ P ++ + + FF+ F +V++
Sbjct: 68 VGRSKAQVAKESVLQFYPKANIVAYHDSIMNPD------YNVEFFRQFILVMN 114
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 67.2 bits (164), Expect = 5e-12
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 7 QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGKS 66
Q L++ ++ +I A GLG E+LK+L L G +ID + I +L F IG+
Sbjct: 406 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 465
Query: 67 RAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVIS 110
+AEVA + L + P+C Q + F++ FH+++
Sbjct: 466 KAEVAAEFLNDRVPNCNVVPHFNKIQDF---NDTFYRQFHIIVC 506
Score = 41.1 bits (96), Expect = 0.001
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 17/121 (14%)
Query: 121 FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVIS--TNL 178
F D IG+ +AEVA + L + P+C Q + F++ FH+++ ++
Sbjct: 456 LFRPKD-IGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDF---NDTFYRQFHIIVCGLDSI 511
Query: 179 P----------ETTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTI-IESHPDNTN 227
E S +PL+ + GF G+ R+ + T IE +
Sbjct: 512 IARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYP 571
Query: 228 P 228
P
Sbjct: 572 P 572
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.5 bits (159), Expect = 3e-11
Identities = 90/533 (16%), Positives = 156/533 (29%), Gaps = 181/533 (33%)
Query: 5 HG--QAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNF--FLDV 60
HG + L A+ L + K L P G D E + +L F ++
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEG--FAADDEPTTPAELVGKFLGYVS- 69
Query: 61 DSIGKSRAEVATQLL-LELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLP 119
+ S+ Q+L L L +F EN L ND H + +
Sbjct: 70 SLVEPSKVGQFDQVLNLCLT-----EF--EN-CYLEGND------IHALAAKLLQENDTT 115
Query: 120 ---------SFFLDVDSIGKSRAEVATQLLLELNPDC----------QG---DFVDENPQ 157
++ + + + L + QG D+ +E
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE--- 172
Query: 158 VLMANDPNFFQSFHMVISTNLPETTLIELS-KTLWSLNIPLLACRSY---GFIGSIRLQI 213
L + +Q++H+++ LI+ S +TL L L G
Sbjct: 173 -LR----DLYQTYHVLVGD------LIKFSAETLSELIRTTLDAEKVFTQGL-------- 213
Query: 214 SEHTIIE--SHPDNTNPDLRLDK-P--WP-----SLIQYV---DSIDLDSLEVKDHM--- 257
I+E +P NT L P P L YV + E++ ++
Sbjct: 214 ---NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 258 --HIPYLV----------------ILYKYLKL-----WQSQNNTQDLPKNYKEKQNLREL 294
H LV + K + + + + P L +
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY---EAYPNTSLPPSILEDS 327
Query: 295 IRSGIRKDENGIP--------LSEENFEEAMKAVN----------FALI--PTTV----- 329
+ + G+P L++E ++ + N +L+ +
Sbjct: 328 LENN-----EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 330 PSS----VARIRK-------DENGIPLSEENFEEAMKAV---NFALIPTTVP-------S 368
P S +RK D++ IP SE K F L P P
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSER------KLKFSNRF-L-PVASPFHSHLLVP 434
Query: 369 SVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNL-PLRGSLPDMTAD 420
+ I D N++ ++ + V D D +L L GS+ + D
Sbjct: 435 ASDLINKDLVKNNVSFNAKD---IQIPVYDTFDGS---DLRVLSGSISERIVD 481
Score = 40.4 bits (94), Expect = 0.001
Identities = 39/226 (17%), Positives = 59/226 (26%), Gaps = 83/226 (36%)
Query: 326 PTTVPSSVAR--------IRKDENG-----IPLSEENFEEA-MK-------AVNFALIPT 364
PTT V + + + G + L FE ++ A
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 365 TVPSSVASILND--NACV----NLTSKSEPFWILAKAVKD--------FVDNEGNGNLPL 410
T ++ + A + KS L +AV + F G GN
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNS--ALFRAVGEGNAQLVAIF---GGQGN--- 165
Query: 411 RGSLPDMTADTTRYIA-LQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFC 469
T Y L+ LY+ D+I A+ L T K+F
Sbjct: 166 ----------TDDYFEELRDLYQTYHVLVGDLIKFSAETL-----SELIRTTLDAEKVFT 210
Query: 470 RNASFIHVNESKLVLKLCDFGSASWSHENEITP---YLVSRFYRAP 512
+ + W TP YL+S P
Sbjct: 211 QG---------------LNI--LEWLENPSNTPDKDYLLS----IP 235
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A;
serine/threonine-protein kinase, minibrain homolog,
nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A
{Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Length = 382
Score = 58.6 bits (142), Expect = 2e-09
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 22/77 (28%)
Query: 446 AQQLLHQLGQPSSAITEAQVKLFCRNASFIH----------VNESKLVLKLCDFGSASWS 495
AQQ+ L + L S IH N + +K+ DFGS+
Sbjct: 163 AQQMCTAL-----------LFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQL 211
Query: 496 HENEITPYLVSRFYRAP 512
+ I Y+ SRFYR+P
Sbjct: 212 GQ-RIYQYIQSRFYRSP 227
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2;
KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase,
structural genomics consortium; HET: SEP PTR IRB; 2.28A
{Homo sapiens} PDB: 3k2l_A*
Length = 429
Score = 58.2 bits (141), Expect = 3e-09
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 24/77 (31%)
Query: 446 AQQLLHQLGQPSSAITEAQVKLFCRNASFIH----------VNESKLVLKLCDFGSASWS 495
A +L L IH + + +K+ DFGS+ +
Sbjct: 206 AHSILQCL-------------DALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYE 252
Query: 496 HENEITPYLVSRFYRAP 512
H+ + Y+ SRFYRAP
Sbjct: 253 HQR-VYTYIQSRFYRAP 268
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR;
3.30A {Ustilago maydis}
Length = 394
Score = 57.3 bits (139), Expect = 5e-09
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 20/86 (23%)
Query: 447 QQLLHQLGQPSSAITEAQVKLF----CRNASFIH---------------VNESKLVLKLC 487
+ + + +KL+ R+ ++IH ++ VLKL
Sbjct: 125 YRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLI 184
Query: 488 DFGSASWSHENEI-TPYLVSRFYRAP 512
DFGSA E Y+ SR+YRAP
Sbjct: 185 DFGSAKILIAGEPNVSYICSRYYRAP 210
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase;
HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB:
1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A*
1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A*
3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Length = 420
Score = 57.4 bits (139), Expect = 5e-09
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 20/86 (23%)
Query: 447 QQLLHQLGQPSSAITEAQVKLF----CRNASFIH---------------VNESKLVLKLC 487
++ + + VKL+ R+ ++IH ++ VLKLC
Sbjct: 140 YRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLC 199
Query: 488 DFGSASWSHENEI-TPYLVSRFYRAP 512
DFGSA E Y+ SR+YRAP
Sbjct: 200 DFGSAKQLVRGEPNVSYICSRYYRAP 225
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces
cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A*
1how_A 2jd5_A
Length = 373
Score = 56.6 bits (137), Expect = 6e-09
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 27/87 (31%)
Query: 440 DVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIH--------------VNESKLVLK 485
+ + ++QLL L R IH E+ + +K
Sbjct: 131 IYVKQISKQLLLGL------------DYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIK 178
Query: 486 LCDFGSASWSHENEITPYLVSRFYRAP 512
+ D G+A W E T + +R YR+P
Sbjct: 179 IADLGNACWYDE-HYTNSIQTREYRSP 204
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum,
ATP-binding, kinase, nucleoti binding; HET: PTR DRK;
2.65A {Cryptosporidium parvum iowa II}
Length = 383
Score = 56.7 bits (137), Expect = 7e-09
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 20/86 (23%)
Query: 447 QQLLHQLGQPSSAITEAQVKLF----CRNASFIH---------------VNESKLVLKLC 487
++L + +I + ++ R FIH VN LKLC
Sbjct: 125 HKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKDNTLKLC 184
Query: 488 DFGSASWSHENEI-TPYLVSRFYRAP 512
DFGSA +E Y+ SRFYRAP
Sbjct: 185 DFGSAKKLIPSEPSVAYICSRFYRAP 210
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis,
transferase; 2.00A {Leishmania major}
Length = 360
Score = 56.5 bits (137), Expect = 7e-09
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 22/88 (25%)
Query: 447 QQLLHQLGQPSSAITEAQVKLF----CRNASFIH-----------------VNESKLVLK 485
+ + A +K+F R+ +H VNE+ LK
Sbjct: 113 HRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLK 172
Query: 486 LCDFGSASWSHENEI-TPYLVSRFYRAP 512
LCDFGSA +E Y+ SR+YRAP
Sbjct: 173 LCDFGSAKKLSPSEPNVAYICSRYYRAP 200
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
binding, metal binding protein; 3.00A {Saccharomyces
cerevisiae} PDB: 3vh2_A
Length = 598
Score = 56.8 bits (137), Expect = 1e-08
Identities = 17/78 (21%), Positives = 35/78 (44%)
Query: 6 GQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDSIGK 65
+++ ++ L+ A LG + ++L+ GV T +D +S + + + GK
Sbjct: 321 NLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGK 380
Query: 66 SRAEVATQLLLELNPDCQ 83
+AE+A L + P
Sbjct: 381 PKAELAAASLKRIFPLMD 398
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria,
structural GE structural genomics consortium, SGC,
transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Length = 360
Score = 55.4 bits (134), Expect = 2e-08
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 484 LKLCDFGSASWSHENEITPYLVSRFYRAP 512
+KL DFG A++ + + +R YRAP
Sbjct: 201 IKLIDFGCATFKSDY-HGSIINTRQYRAP 228
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase;
1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A
3nr9_A*
Length = 355
Score = 54.6 bits (132), Expect = 3e-08
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 484 LKLCDFGSASWSHENEITPYLVSRFYRAP 512
+++ DFGSA++ HE+ T + +R YR P
Sbjct: 181 IRVADFGSATFDHEH-HTTIVATRHYRPP 208
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase,
splicing, human, 10Z-hymendialdisine, structural
genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Length = 339
Score = 54.6 bits (132), Expect = 3e-08
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 484 LKLCDFGSASWSHENEITPYLVSRFYRAP 512
+K+ DFGSA++ E+ T + +R YRAP
Sbjct: 176 IKVVDFGSATYDDEHHST-LVSTRHYRAP 203
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein
structure, MCCC7, peptide antibiotics, N-P bond
formation, transferase; HET: ATP; 1.90A {Escherichia
coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Length = 353
Score = 54.3 bits (131), Expect = 4e-08
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 2 WGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFL--- 58
Q L++A++ ++ G+G + L G+G +ID ++I TN L
Sbjct: 108 NPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIEN----TN--LTRQ 161
Query: 59 ---DVDSIGKSRAEVATQLLLELNPDCQ 83
D +GK++ EV + LL+ N +
Sbjct: 162 VLFSEDDVGKNKTEVIKRELLKRNSEIS 189
Score = 32.0 bits (73), Expect = 0.44
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 126 DSIGKSRAEVATQLLLELNPDCQ 148
D +GK++ EV + LL+ N +
Sbjct: 167 DDVGKNKTEVIKRELLKRNSEIS 189
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein
complex, THIF, TRAN biosynthetic protein complex; 1.98A
{Escherichia coli} PDB: 1zfn_A* 1zkm_A
Length = 251
Score = 52.9 bits (128), Expect = 6e-08
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 3 GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFL---- 58
GQ L +++ +I GLGT L GVG+ + D + + +N L
Sbjct: 19 ALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHL----SN--LQRQI 72
Query: 59 --DVDSIGKSRAEVATQLLLELNPDCQ 83
+ I + +++V+ Q L +LNPD Q
Sbjct: 73 LFTTEDIDRPKSQVSQQRLTQLNPDIQ 99
Score = 30.6 bits (70), Expect = 0.95
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 126 DSIGKSRAEVATQLLLELNPDCQ 148
+ I + +++V+ Q L +LNPD Q
Sbjct: 77 EDIDRPKSQVSQQRLTQLNPDIQ 99
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann
fold, (2) Cys-X-X-Cys zinc-binding M MOAD:
ubiquitin-like fold; 1.70A {Escherichia coli} SCOP:
c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Length = 249
Score = 51.3 bits (124), Expect = 2e-07
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 3 GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDL------GTNF 56
GQ AL+ +R+ ++ GLG + L GVG+ T++D + +S +L
Sbjct: 22 DFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSD-- 79
Query: 57 FLDVDSIGKSRAEVATQLLLELNPDCQ 83
++G+ + E A L +NP
Sbjct: 80 ----ATVGQPKVESARDALTRINPHIA 102
Score = 30.2 bits (69), Expect = 1.4
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 126 DSIGKSRAEVATQLLLELNPDCQ 148
++G+ + E A L +NP
Sbjct: 80 ATVGQPKVESARDALTRINPHIA 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 4e-07
Identities = 75/537 (13%), Positives = 163/537 (30%), Gaps = 146/537 (27%)
Query: 81 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLL 140
DC+ D D +L + + H+++S + + F + S + + + +
Sbjct: 34 DCK-DVQDMPKSILSKEEID-----HIIMSKD-AVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 141 LELN---------PDCQG------DFVDENPQVLMANDPNFFQSFHMVISTNLPETTLIE 185
L +N + + ++++ + + ND F +++ ++
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDNQVFAKYNVSR-----LQPYLK 139
Query: 186 LSKTLWSL----NIPL----------LA---CRSYGFIG---------SIRLQISEHTII 219
L + L L N+ + +A C SY +++ S T++
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 220 ESHPDNTNPDLRLDKPWPSLIQYVDSIDLDSLEVKDH-----MHIPY---LVIL--YKYL 269
E ++D W S + +I L ++ PY L++L +
Sbjct: 200 EML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 270 KLWQSQNN-------TQDLP-----KNYKEKQNLRELIRSGIRKDE------NGIPLSEE 311
K W + N T+ + + DE + +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 312 NFEEAMKAVN---FALIPTTVPSSVARIR--------KDENGIPLSEENFEEA-MKA--V 357
+ + N ++I ++ +A K I S E A +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 358 NFALIP--TTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLP 415
++ P +P+ + S++ + KS+ ++ K K + + S+P
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFD-----VIKSDVMVVVNKLHKYSLVEK--QPKESTISIP 429
Query: 416 DMTADTTRYIA-LQQL-------YRDQAGRDADV---------IYRRAQQLLHQLGQPSS 458
+ + + L Y D+D Y + H L
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY---SHIGHHL----K 482
Query: 459 AITEAQ-VKLFCR---NASFIHVNESKLVLKLCDFGSASWSHENEITPYLVS-RFYR 510
I + + LF + F+ K+ +A W+ I L +FY+
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQ-------KIRHDSTA-WNASGSILNTLQQLKFYK 531
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 50.4 bits (121), Expect = 6e-07
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 6 GQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISE-----QDLGTNFFLDV 60
+++ ++ L+ A LG + ++L+ GV T +D +S Q L
Sbjct: 28 NLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYN-----F 82
Query: 61 DSIGKSRAEVATQLLLELNPDCQ 83
+ GK +AE+A L + P
Sbjct: 83 EDCGKPKAELAAASLKRIFPLMD 105
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold,
ATP-binding, UBL conjugation pathway, transfer
structural genomics consortium, SGC; HET: ATP; 2.00A
{Homo sapiens} PDB: 3guc_A*
Length = 292
Score = 49.6 bits (119), Expect = 8e-07
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 6 GQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNF---FLDVDS 62
+ + + ++ G+G+ + L G+G + D +K+ N F
Sbjct: 30 DYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVEL----ANMNRLFFQPHQ 85
Query: 63 IGKSRAEVATQLLLELNPDCQ 83
G S+ + A L +NPD
Sbjct: 86 AGLSKVQAAEHTLRNINPDVL 106
Score = 30.7 bits (70), Expect = 1.1
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 122 FLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPE 180
F G S+ + A L +NPD + + N FQ F IS E
Sbjct: 80 FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN-----ITTVENFQHFMDRISNGGLE 133
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor,
transferase-transferase inhibitor CO; HET: ANP; 1.30A
{Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A*
3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A
3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A*
3owj_A* 3owk_A* ...
Length = 330
Score = 44.2 bits (105), Expect = 5e-05
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 23/83 (27%)
Query: 450 LHQLGQPSSAITEAQVKLF----CRNASFIH---------------VNESKLVLKLCDFG 490
QL Q +T+ ++ + + + H ++ L+L D+G
Sbjct: 120 FKQLYQT---LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG 176
Query: 491 SASWSHEN-EITPYLVSRFYRAP 512
A + H E + SR+++ P
Sbjct: 177 LAEFYHPGQEYNVRVASRYFKGP 199
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular
signal regulated kinase 3, serine phosphorylation,
threonine phosphorylation; 2.25A {Homo sapiens}
Length = 320
Score = 43.0 bits (102), Expect = 1e-04
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 475 IHVNESKLVLKLCDFGSA-----SWSHENEITPYLVSRFYRAP 512
+ +N LVLK+ DFG A +SH+ ++ LV+++YR+P
Sbjct: 151 LFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSP 193
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in
transferase-transferase inhibitor complex; HET: JBI;
2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Length = 464
Score = 42.5 bits (100), Expect = 2e-04
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 484 LKLCDFGSA-SWSHENEITPYLVSRFYRAP 512
LK+ DFG A + +TPY+V+R+YRAP
Sbjct: 203 LKILDFGLARTAGTSFMMTPYVVTRYYRAP 232
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK
Ser/Thr protein kinase fold, Ser/Thr protein kinase,
TRA; 1.95A {Leishmania major}
Length = 362
Score = 42.3 bits (100), Expect = 3e-04
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 484 LKLCDFGSA-SWSHENEITPYLVSRFYRAP 512
+ +CDF A + + T Y+ R+YRAP
Sbjct: 173 ITICDFNLAREDTADANKTHYVTHRWYRAP 202
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase;
HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Length = 367
Score = 41.2 bits (97), Expect = 7e-04
Identities = 15/29 (51%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 484 LKLCDFGSASWSHENEITPYLVSRFYRAP 512
LK+ DFG A ++E+T Y+V+R+YRAP
Sbjct: 167 LKILDFGLAR-QADSEMTGYVVTRWYRAP 194
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling
pathways, linear binding motif; HET: ANP; 1.33A {Homo
sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A*
2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X*
2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A*
1pmq_A* ...
Length = 371
Score = 40.8 bits (96), Expect = 7e-04
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 484 LKLCDFGSA-SWSHENEITPYLVSRFYRAP 512
LK+ DFG A + +TPY+V+R+YRAP
Sbjct: 166 LKILDFGLARTAGTSFMMTPYVVTRYYRAP 195
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP
kinase, PMK, STK26, stress-activated protein kinase,
structural genomics, PSI; 2.09A {Homo sapiens}
Length = 353
Score = 40.7 bits (96), Expect = 7e-04
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 484 LKLCDFGSASWSHENEITPYLVSRFYRAP 512
LK+ DFG A + E+T Y+V+R+YRAP
Sbjct: 165 LKILDFGLAR-HADAEMTGYVVTRWYRAP 192
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP
kinase insertion, autophosphorylation, transferase; HET:
BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X*
2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A*
2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A*
3l8x_A* 3mvl_A* 3mvm_A* ...
Length = 367
Score = 40.8 bits (96), Expect = 8e-04
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 484 LKLCDFGSASWSHENEITPYLVSRFYRAP 512
LK+ DFG A +E+T Y+ +R+YRAP
Sbjct: 171 LKILDFGLAR-HTADEMTGYVATRWYRAP 198
>3qyz_A Mitogen-activated protein kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding CE
phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus
norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A*
4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A
3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A*
2oji_A* ...
Length = 364
Score = 39.2 bits (92), Expect = 0.002
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 484 LKLCDFG-----SASWSHENEITPYLVSRFYRAP 512
LK+CDFG H +T Y+ +R+YRAP
Sbjct: 167 LKICDFGLARVADPDHDHTGFLTEYVATRWYRAP 200
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET:
D15; 2.40A {Homo sapiens}
Length = 311
Score = 38.3 bits (90), Expect = 0.004
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 20/84 (23%)
Query: 449 LLHQLGQPSSAITEAQVKLF----CRNASFIHVN--------------ESKLVLKLCDFG 490
+LH+L + + E VK + +F H + V+KLCDFG
Sbjct: 88 VLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFG 147
Query: 491 SA-SWSHENEI-TPYLVSRFYRAP 512
A + ++ + +R+YR+P
Sbjct: 148 FARLLTGPSDYYDDEVATRWYRSP 171
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3;
transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae}
PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Length = 353
Score = 37.6 bits (88), Expect = 0.008
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 12/41 (29%)
Query: 484 LKLCDFGSA------------SWSHENEITPYLVSRFYRAP 512
LK+CDFG A ++ + ++ +R+YRAP
Sbjct: 151 LKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAP 191
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle,
phosphorylation, ATP-BIN cell division, disease
mutation, kinase; 3.00A {Homo sapiens}
Length = 308
Score = 36.0 bits (84), Expect = 0.021
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 19/77 (24%)
Query: 455 QPSSAITEAQVKLF----CRNASFIHVN--------------ESKLVLKLCDFGSA-SWS 495
P + +K R F+H N S +KL DFG A +S
Sbjct: 112 APPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYS 171
Query: 496 HENEITPYLVSRFYRAP 512
++ +TP +V+ +YRAP
Sbjct: 172 YQMALTPVVVTLWYRAP 188
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET:
DKI; 1.53A {Homo sapiens}
Length = 331
Score = 36.0 bits (84), Expect = 0.022
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 20/84 (23%)
Query: 449 LLHQLGQPSSAITEAQVKLF----CRNASFIHVN--------------ESKLVLKLCDFG 490
+L L + + V+ + F H + V+KLCDFG
Sbjct: 110 ILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFG 169
Query: 491 SA--SWSHENEITPYLVSRFYRAP 512
A + + +R+YRAP
Sbjct: 170 FARTLAAPGEVYDDEVATRWYRAP 193
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent
kinase, cell cycle control, alpha/beta, complex
(inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP:
d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B*
2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B
2w9f_B
Length = 326
Score = 35.3 bits (82), Expect = 0.039
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 21/84 (25%)
Query: 448 QLLHQLGQPSSAITEAQVKLF----CRNASFIHVN--------------ESKLVLKLCDF 489
L ++ +P + +K R F+H + S +KL DF
Sbjct: 107 TYLDKVPEPG--VPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADF 164
Query: 490 GSA-SWSHENEITPYLVSRFYRAP 512
G A +S + +T +V+ +YRAP
Sbjct: 165 GLARIYSFQMALTSVVVTLWYRAP 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 34.0 bits (77), Expect = 0.11
Identities = 28/209 (13%), Positives = 51/209 (24%), Gaps = 18/209 (8%)
Query: 86 FVDENPQVLMANDPNFFQSFHMVISTNCPILSLPSFFLDVDSIGKSRAEVATQLLLELNP 145
D L P S + L + + E + L +
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK 360
Query: 146 DCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPETTLIELSKTLWSLNIPLLACRSYGF 205
E+ + L +P +I L+ +TL +
Sbjct: 361 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS----------- 409
Query: 206 IGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLIQYVDSIDLDSLEVKDHMHIPYLVIL 265
L+ + D + L + V + L ++ + +L L
Sbjct: 410 ----TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV---LCHLEQL 462
Query: 266 YKYLKLWQSQNNTQDLPKNYKEKQNLREL 294
L S N + LP + L L
Sbjct: 463 LLVTHLDLSHNRLRALPPALAALRCLEVL 491
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase;
structural genomics consortium, SGC, transferase; 2.37A
{Cryptosporidium parvum iowa II}
Length = 388
Score = 33.1 bits (76), Expect = 0.19
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 23/52 (44%)
Query: 484 LKLCDFGSA-----------------------SWSHENEITPYLVSRFYRAP 512
+K+ DFG + + +T Y+ +R+YRAP
Sbjct: 148 VKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAP 199
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding;
HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A*
3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A*
Length = 351
Score = 33.0 bits (76), Expect = 0.21
Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 24/84 (28%)
Query: 453 LGQPSSAITEAQVKLF----CRNASFIHVN--------------ESKLVLKLCDFGSASW 494
L T +++K +IH N VLKL DFG A
Sbjct: 114 LSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARA 173
Query: 495 ------SHENEITPYLVSRFYRAP 512
S N T +V+ +YR P
Sbjct: 174 FSLAKNSQPNRYTNRVVTLWYRPP 197
>3niz_A Rhodanese family protein; structural genomics, structural genomics
consortium, SGC, phosphotransferase, cyclin dependent
kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB:
2qkr_A*
Length = 311
Score = 32.5 bits (75), Expect = 0.29
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 23/85 (27%)
Query: 448 QLLHQLGQPSSAITEAQVKLF----CRNASFIHVN--------------ESKLVLKLCDF 489
++L + + ++Q+K++ R + H + S LKL DF
Sbjct: 107 KVLDENKTG---LQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADF 163
Query: 490 GSASW--SHENEITPYLVSRFYRAP 512
G A T +V+ +YRAP
Sbjct: 164 GLARAFGIPVRSYTHEVVTLWYRAP 188
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.30
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 10/39 (25%)
Query: 287 EKQNLRELIRSGIRKDENGIPLSEENFEEAMKAVNFALI 325
EKQ L++L + + L ++ A+ A+ A +
Sbjct: 18 EKQALKKL--------QASLKLYADDSAPAL-AIK-ATM 46
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation,
protein-protein interaction, PR kinase, cell cycle,
transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP:
d.144.1.7
Length = 346
Score = 32.5 bits (75), Expect = 0.30
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 20/77 (25%)
Query: 456 PSSAITEAQVKLF----CRNASFIHVN--------------ESKLVLKLCDFGSASW--S 495
S +T + +K + + ++H + + VLKL DFG A S
Sbjct: 105 NSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGS 164
Query: 496 HENEITPYLVSRFYRAP 512
T +V+R+YRAP
Sbjct: 165 PNRAYTHQVVTRWYRAP 181
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase
inhibitor complex, transferase-transferase activator
complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A*
1ung_A* 1unl_A* 1h4l_A
Length = 292
Score = 32.5 bits (75), Expect = 0.31
Identities = 15/85 (17%), Positives = 23/85 (27%), Gaps = 23/85 (27%)
Query: 448 QLLHQLGQPSSAITEAQVKLF----CRNASFIHVN--------------ESKLVLKLCDF 489
+ + VK F + F H LKL +F
Sbjct: 89 KYFDSCNGD---LDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANF 145
Query: 490 GSASW--SHENEITPYLVSRFYRAP 512
G A + +V+ +YR P
Sbjct: 146 GLARAFGIPVRCYSAEVVTLWYRPP 170
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase,
cell cycle, inhibition, cyclin-dependent kinase, cancer,
ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A*
2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A*
1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A*
1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Length = 299
Score = 32.1 bits (74), Expect = 0.32
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 20/78 (25%)
Query: 455 QPSSAITEAQVKLF----CRNASFIHVN--------------ESKLVLKLCDFGSASW-- 494
+ I +K + + +F H + ++ +KL DFG A
Sbjct: 95 SALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFG 154
Query: 495 SHENEITPYLVSRFYRAP 512
T +V+ +YRAP
Sbjct: 155 VPVRTYTHEVVTLWYRAP 172
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural
genomics, structural consortium, SGC, transferase; HET:
FEF; 2.40A {Homo sapiens}
Length = 324
Score = 32.2 bits (74), Expect = 0.35
Identities = 21/85 (24%), Positives = 27/85 (31%), Gaps = 23/85 (27%)
Query: 448 QLLHQLGQPSSAITEAQVKLF----CRNASFIHVN--------------ESKLVLKLCDF 489
Q L G I VKLF R ++ H + LKL DF
Sbjct: 88 QYLDDCGNI---INMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADF 144
Query: 490 GSASW--SHENEITPYLVSRFYRAP 512
G A +V+ +YR P
Sbjct: 145 GLARAKSIPTKTYDNEVVTLWYRPP 169
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural
genomics CON SGC; 2.05A {Plasmodium berghei} PDB:
3nie_A*
Length = 432
Score = 32.4 bits (74), Expect = 0.38
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 24/53 (45%)
Query: 484 LKLCDFGSA------------------------SWSHENEITPYLVSRFYRAP 512
+K+CDFG A + + + ++T ++V+R+YRAP
Sbjct: 168 VKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAP 220
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase,
serine/threonine-protein kinase, ATP-binding,
phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP:
d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Length = 288
Score = 31.3 bits (72), Expect = 0.63
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 23/85 (27%)
Query: 448 QLLHQLGQPSSAITEAQVKLF----CRNASFIHVN--------------ESKLVLKLCDF 489
+LL + K F ++ H + LK+ DF
Sbjct: 88 KLLDVCEGG---LESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADF 144
Query: 490 GSASW--SHENEITPYLVSRFYRAP 512
G A + T +V+ +YRAP
Sbjct: 145 GLARAFGIPVRKYTHEIVTLWYRAP 169
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85;
cyclin-dependent kinase, signaling protein,transfera
cycle complex; HET: MES AGS; 2.90A {Saccharomyces
cerevisiae} PDB: 2pk9_A*
Length = 317
Score = 30.2 bits (69), Expect = 1.4
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 20/82 (24%)
Query: 451 HQLGQPSSAITEAQVKLF----CRNASFIHVN--------------ESKLVLKLCDFGSA 492
+G + VK F + +F H N + LKL DFG A
Sbjct: 96 RTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLA 155
Query: 493 SW--SHENEITPYLVSRFYRAP 512
N + +V+ +YRAP
Sbjct: 156 RAFGIPVNTFSSEVVTLWYRAP 177
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding,
serine/threonine-protein kinase, transferase; 1.85A
{Giardia lamblia} PDB: 3gc0_A*
Length = 329
Score = 29.9 bits (68), Expect = 1.9
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 25/88 (28%)
Query: 450 LHQLGQPSSAITEAQVKLF----CRNASFIHVN-------------------ESKLVLKL 486
L + + ++ +K F +F H VLK+
Sbjct: 119 LKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKI 178
Query: 487 CDFGSASW--SHENEITPYLVSRFYRAP 512
DFG A + T +++ +YR P
Sbjct: 179 GDFGLARAFGIPIRQFTHEIITLWYRPP 206
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid
binding protein, bIle acid binding, ileal epithelium,
fatty acid binding protein; NMR {Sus scrofa} SCOP:
b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Length = 127
Score = 28.2 bits (63), Expect = 3.3
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 20/65 (30%)
Query: 309 SEENFEEAMKA--VNFALI-------PT----------TVPSSVARIRKDENGIPLSEEN 349
SE+N++E MK + I T N + +E
Sbjct: 10 SEKNYDEFMKRLALPSDAIDKARNLKIISEVKQDGQNFTWSQQYPGGHSITNTFTIGKE- 68
Query: 350 FEEAM 354
+
Sbjct: 69 CDIET 73
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase,
serine/threonine kinase, cyclin clathrine, membrane
trafficking, structural genomics; 2.10A {Homo sapiens}
Length = 337
Score = 29.0 bits (65), Expect = 3.6
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 24/52 (46%)
Query: 480 SKLVLKLCDFGSA---------SWSH------ENEI----TPYLVSRFYRAP 512
++ +KLCDFGSA SWS E EI TP YR P
Sbjct: 173 NQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPM-----YRTP 219
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase,
alternative splicing, ATP-binding, chromosome partition,
differentiation, mRNA processing; 1.73A {Homo sapiens}
PDB: 1wbp_A* 3beg_A* 2x7g_A*
Length = 397
Score = 28.7 bits (64), Expect = 5.4
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 478 NESKLVLKLCDFGSASWSHE---NEITPYLVSRFYRAP 512
N KL +K+ D G+A W H+ +I R YR+
Sbjct: 229 NAEKLKVKIADLGNACWVHKHFTEDIQT----RQYRSL 262
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding,
lipoprotein, myristate, PA phosphorylation; HET: STU;
2.6A {Homo sapiens}
Length = 317
Score = 28.1 bits (63), Expect = 7.2
Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 21/46 (45%)
Query: 483 VLKLCDFGSASWSH------------ENEI----TPYLVSRFYRAP 512
L D GS + + ++ T YRAP
Sbjct: 172 QPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTIS-----YRAP 212
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA
repair, DNA synthesis, binding, magnesium,
metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Length = 504
Score = 27.9 bits (62), Expect = 8.8
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 415 PDMTADTTRYIALQQLYR----DQAGRDADVIYRRAQQLLHQLGQPSSAI 460
P TA + + R DQA +A +I + + H + S +
Sbjct: 436 PVETAKFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDM 485
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 27.5 bits (62), Expect = 9.6
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 414 LPDMTADTTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLG 454
+P +TA + L +++ + + +RA + L
Sbjct: 95 IPLLTA--LENVELPLIFKYRGAMSGEERRKRALECLKMAE 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.396
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,678,365
Number of extensions: 458486
Number of successful extensions: 1393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1340
Number of HSP's successfully gapped: 83
Length of query: 512
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 414
Effective length of database: 3,965,535
Effective search space: 1641731490
Effective search space used: 1641731490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)