RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17422
(512 letters)
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 529
Score = 321 bits (825), Expect = e-105
Identities = 166/357 (46%), Positives = 229/357 (64%), Gaps = 38/357 (10%)
Query: 121 FFLDVDSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNLPE 180
FFL SIGK+RAE A + L ELN D G FV+E+P+ L+ NDP+FF F +V++T LPE
Sbjct: 69 FFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPE 128
Query: 181 TTLIELSKTLWSLNIPLLACRSYGFIGSIRLQISEHTIIESHPDNTNPDLRLDKPWPSLI 240
+T + L+ LW+ IPLL CR+YG +G +R+ I EH +IESHPDN DLRLDKP+P L
Sbjct: 129 STSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELR 188
Query: 241 QYVDSIDLDSLEVKDHMHIPYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIR 300
++ S DLD +E KDH H P++VI+ KYL W S+ N + +PK YKEK++ R+LIR G
Sbjct: 189 EHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGR-IPKTYKEKEDFRDLIRQG-- 245
Query: 301 KDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEENFEEAMKAVNFA 360
I K+ENG P EENFEEA+K VN A
Sbjct: 246 -----------------------------------ILKNENGAPEDEENFEEAIKNVNTA 270
Query: 361 LIPTTVPSSVASILNDNACVNLTSKSEPFWILAKAVKDFVDNEGNGNLPLRGSLPDMTAD 420
L T +PSS+ I ND+ C+N+T ++ FWILA+A+K+FV EG GNLP+RG++PDM AD
Sbjct: 271 LNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIAD 330
Query: 421 TTRYIALQQLYRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHV 477
+ +YI LQ +YR++A +DA + +LL +GQ +I+E ++KL C N++F+ V
Sbjct: 331 SGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRV 387
Score = 129 bits (326), Expect = 5e-33
Identities = 72/115 (62%), Positives = 88/115 (76%)
Query: 1 LWGDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDV 60
LWGDHGQ ALESA +CLINAT GTEILK+LVLPG+GSFTIIDG ++S +D G NFFL
Sbjct: 14 LWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQR 73
Query: 61 DSIGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPI 115
SIGK+RAE A + L ELN D G FV+E+P+ L+ NDP+FF F +V++T P
Sbjct: 74 SSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPE 128
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 86.7 bits (214), Expect = 6e-19
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 3 GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDS 62
+ Q L++ ++ +I A GLG E+LK+L L G +ID + I +L F
Sbjct: 28 TESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKD 87
Query: 63 IGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPI 115
IG+ +AEVA + L + P+C V + + + F++ FH+++ I
Sbjct: 88 IGRPKAEVAAEFLNDRVPNC---NVVPHFNKIQDFNDTFYRQFHIIVCGLDSI 137
Score = 38.2 bits (88), Expect = 0.002
Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 14/135 (10%)
Query: 121 FFLDVDSIGKSRAEVATQLLLELNPDCQ----GDFVDENPQVLMANDPNFFQSFHMVIST 176
F IG+ +AEVA + L + P+C + + + +I+
Sbjct: 81 FLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIAR 140
Query: 177 NLPETTLIELSKT-----LWSLNIPLLACRSYGFIGSIRLQISEHT-----IIESHPDNT 226
LI L S +PL+ + GF G+ R+ + T +E +P
Sbjct: 141 RWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQV 200
Query: 227 NPDLRLDKPWPSLIQ 241
N + P L +
Sbjct: 201 NFPMCTIASMPRLPE 215
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein
MoeB {Escherichia coli [TaxId: 562]}
Length = 247
Score = 63.8 bits (154), Expect = 4e-12
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Query: 3 GDHGQAALESARICLINATGLGTEILKSLVLPGVGSFTIIDGEKISEQDLGTNFFLDVDS 62
GQ AL+ +R+ ++ GLG + L GVG+ T++D + +S +L +
Sbjct: 21 DFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDAT 80
Query: 63 IGKSRAEVATQLLLELNPDCQGDFVDENPQVLMANDPNFFQSFHMVISTNCPI 115
+G+ + E A L +NP V+ + A +V+ +
Sbjct: 81 VGQPKVESARDALTRINPHIAITPVNAL--LDDAELAALIAEHDLVLDCTDNV 131
>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein
kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 273
Score = 37.4 bits (86), Expect = 0.003
Identities = 15/69 (21%), Positives = 26/69 (37%)
Query: 444 RRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENEITPY 503
A+ Q+ + V I ++ ++ LKL DFGS + + T +
Sbjct: 110 ELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDF 169
Query: 504 LVSRFYRAP 512
+R Y P
Sbjct: 170 DGTRVYSPP 178
>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 270
Score = 36.5 bits (84), Expect = 0.006
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 9/62 (14%)
Query: 460 ITEAQVKLFCRNASFIH---------VNESKLVLKLCDFGSASWSHENEITPYLVSRFYR 510
I + L R IH + +K+ D G A+ + + + +
Sbjct: 121 ILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFM 180
Query: 511 AP 512
AP
Sbjct: 181 AP 182
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein,
SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 30.5 bits (69), Expect = 0.12
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 290 NLRELIRSGIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEEN 349
+L I S +R N ++EE +K V AL+ V + K S +
Sbjct: 9 DLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLV---KQLRENVKSAID 65
Query: 350 FEEAMKAVN 358
EE +N
Sbjct: 66 LEEMASGLN 74
Score = 26.6 bits (59), Expect = 2.9
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 345 LSEENFEEAMKAVNFALIPTTVPSSVASILNDNA 378
++EE +K V AL+ V + L +N
Sbjct: 27 INEEVLNAMLKEVCTALLEADVNIKLVKQLRENV 60
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein
kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 322
Score = 31.6 bits (71), Expect = 0.22
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 480 SKLVLKLCDFGSASWSHENEITPYLVSRFYRAP 512
S+ +KLCDFG + ++ ++ +R Y +P
Sbjct: 140 SRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSP 172
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 263
Score = 30.3 bits (68), Expect = 0.42
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 480 SKLVLKLCDFGSASWSHENEITPYLVSRFYRAP 512
S LK+ DFG + + + T + Y P
Sbjct: 141 SAGELKIADFGWSVHAPSSRRTTLCGTLDYLPP 173
>d1ftpa_ b.60.1.2 (A:) Fatty acid-binding protein {Desert locust
(Schistocerca gregaria) [TaxId: 7010]}
Length = 133
Score = 27.1 bits (60), Expect = 2.4
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 346 SEENFEEAMKA--VNFALIP---TTVPSSVASILNDN 377
S+ NFEE MKA V P IL+ +
Sbjct: 13 SQTNFEEYMKAIGVGAIERKAGLALSPVIELEILDGD 49
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 26.7 bits (59), Expect = 2.7
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 260 PYLVILYKYLKLWQSQNNTQDLPKNYKEKQNLRELIRSGIRKDENGIPLSEENFEEAMKA 319
P L L + + +PKN + + ++ R RK + PL+EE E K
Sbjct: 37 PRLFELLDQEIYYFRKTVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEE--EIQEKE 94
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh
{Thermus aquaticus [TaxId: 271]}
Length = 88
Score = 26.2 bits (58), Expect = 2.7
Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 289 QNLRELIRSGIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVARIRKDENGIPLSEE 348
Q L ++ I + ++EE+ + ++ + AL+ V VA +D E
Sbjct: 3 QQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVA---RDFVERVREEA 59
Query: 349 NFEEAMKAVN 358
++ ++++
Sbjct: 60 LGKQVLESLT 69
>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare
(Aplysia californica), twk43 [TaxId: 6500]}
Length = 352
Score = 27.7 bits (61), Expect = 4.0
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 484 LKLCDFGSASWSHENEITPYLV-SRFYRAP 512
+K+ DFG A+ + +EI + + AP
Sbjct: 168 VKIIDFGLATKLNPDEIVKVTTATAEFAAP 197
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 309
Score = 27.3 bits (60), Expect = 4.2
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 480 SKLVLKLCDFGSASWSHENEITPYLVSRFYRAP 512
++KL DFGSAS ++ + ++ AP
Sbjct: 150 EPGLVKLGDFGSASIMAPA--NSFVGTPYWMAP 180
>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 269
Score = 27.3 bits (60), Expect = 4.7
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 445 RAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVNESKLVLKLCDFGSASWSHENE--ITP 502
A + H+ + +K + + ++ K +KL DFG A + +
Sbjct: 120 LALKECHRRSDGGHTVLHRDLK-----PANVFLDG-KQNVKLGDFGLARILNHDTSFAKA 173
Query: 503 YLVSRFYRAP 512
++ + +Y +P
Sbjct: 174 FVGTPYYMSP 183
>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh
{Archaeon Acidianus ambivalens [TaxId: 2283]}
Length = 84
Score = 25.5 bits (56), Expect = 4.8
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 291 LRELIRSGIRKDENGIPLSEENFEEAMKAVNFALIPTTVPSSVAR 335
L + +R +RK G ++ E+ +K + +LI V +
Sbjct: 1 LLDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVF 45
>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit
{Rattus norvegicus [TaxId: 10116]}
Length = 328
Score = 27.1 bits (59), Expect = 5.5
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 473 SFIHVNESKLVLKLCDFGSASWSHENE-ITPYLVSRFYRAP 512
+ ++ L+L D+G A + H + + SR+++ P
Sbjct: 158 HNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGP 198
>d1b56a_ b.60.1.2 (A:) Epidermal fatty acid binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 26.0 bits (57), Expect = 5.9
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 309 SEENFEEAMKA--VNFALIPT-TVPSSVARIRKDENGI 343
+ F+E MK V AL + I D +
Sbjct: 13 DSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNL 50
>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 350
Score = 27.1 bits (59), Expect = 6.3
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 472 ASFIHVNESKLVLKLCDFGSASWSHENEITP-YLVSRFYRAP 512
+ ++ VLKLCDFGSA E Y+ SR+YRAP
Sbjct: 150 PQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAP 191
>d1mdca_ b.60.1.2 (A:) Fatty acid-binding protein {Tobacco hornworm
(Manduca sexta) [TaxId: 7130]}
Length = 131
Score = 25.9 bits (57), Expect = 6.8
Identities = 5/19 (26%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 309 SEENFEEAMKA--VNFALI 325
+ENF+ +K+ ++ I
Sbjct: 11 KQENFDGFLKSAGLSDDKI 29
Score = 25.9 bits (57), Expect = 6.8
Identities = 5/19 (26%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 346 SEENFEEAMKA--VNFALI 362
+ENF+ +K+ ++ I
Sbjct: 11 KQENFDGFLKSAGLSDDKI 29
>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein
kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 26.5 bits (58), Expect = 8.9
Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 20/84 (23%)
Query: 449 LLHQLGQPSSAITEAQVKLFCR----------NASFIHVN--------ESKLVLKLCDFG 490
+ + + +TE+Q+++ C+ + IH + +KL DFG
Sbjct: 96 VDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFG 155
Query: 491 SASW--SHENEITPYLVSRFYRAP 512
++ ++ + ++ AP
Sbjct: 156 VSAKNTRTIQRRDSFIGTPYWMAP 179
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.396
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,858,568
Number of extensions: 85057
Number of successful extensions: 314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 29
Length of query: 512
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 423
Effective length of database: 1,185,626
Effective search space: 501519798
Effective search space used: 501519798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)