BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17424
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
pdb|3NR9|B Chain B, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
pdb|3NR9|C Chain C, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
Length = 368
Score = 150 bits (379), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 80/89 (89%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSV 86
ALKIIKNVEKY+EAARLEIN L+KI EKDP+ ++LCV+M DWFDYHGHMCI+FE+LGLS
Sbjct: 63 ALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLST 122
Query: 87 FDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
FDFLK+NNYLPY + QVRHM++QL AV+
Sbjct: 123 FDFLKDNNYLPYPIHQVRHMAFQLCQAVK 151
>pdb|2WU6|A Chain A, Crystal Structure Of The Human Clk3 In Complex With Dki
pdb|2WU7|A Chain A, Crystal Structure Of The Human Clk3 In Complex With V25
pdb|3RAW|A Chain A, Crystal Structure Of Human Cdc-Like Kinase 3 Isoform In
Complex With Leucettine L41
pdb|3RAW|B Chain B, Crystal Structure Of Human Cdc-Like Kinase 3 Isoform In
Complex With Leucettine L41
Length = 381
Score = 130 bits (328), Expect = 1e-31, Method: Composition-based stats.
Identities = 60/89 (67%), Positives = 73/89 (82%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSV 86
ALKII+NV KYREAARLEIN L+KI EKD + LCV M DWF++HGHMCIAFE+LG +
Sbjct: 81 ALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNT 140
Query: 87 FDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
F+FLKENN+ PY L VRHM+YQL +A++
Sbjct: 141 FEFLKENNFQPYPLPHVRHMAYQLCHALR 169
>pdb|2EU9|A Chain A, Crystal Structure Of Clk3
Length = 355
Score = 130 bits (328), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/89 (67%), Positives = 73/89 (82%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSV 86
ALKII+NV KYREAARLEIN L+KI EKD + LCV M DWF++HGHMCIAFE+LG +
Sbjct: 49 ALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNT 108
Query: 87 FDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
F+FLKENN+ PY L VRHM+YQL +A++
Sbjct: 109 FEFLKENNFQPYPLPHVRHMAYQLCHALR 137
>pdb|2EXE|A Chain A, Crystal Structure Of The Phosphorylated Clk3
Length = 357
Score = 130 bits (328), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/89 (67%), Positives = 73/89 (82%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSV 86
ALKII+NV KYREAARLEIN L+KI EKD + LCV M DWF++HGHMCIAFE+LG +
Sbjct: 58 ALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNT 117
Query: 87 FDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
F+FLKENN+ PY L VRHM+YQL +A++
Sbjct: 118 FEFLKENNFQPYPLPHVRHMAYQLCHALR 146
>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With
10z-Hymenialdisine
Length = 339
Score = 115 bits (288), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 68/88 (77%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSV 86
A+KI+KNV++Y EAAR EI L+ + DPN CV+ML+WF++HGH+CI FE+LGLS
Sbjct: 44 AVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLST 103
Query: 87 FDFLKENNYLPYSLDQVRHMSYQLIYAV 114
+DF+KEN +LP+ LD +R M+YQ+ +V
Sbjct: 104 YDFIKENGFLPFRLDHIRKMAYQICKSV 131
>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In
Complex With A Novel Substituted Indole Inhibitor
Length = 339
Score = 115 bits (288), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 68/88 (77%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSV 86
A+KI+KNV++Y EAAR EI L+ + DPN CV+ML+WF++HGH+CI FE+LGLS
Sbjct: 44 AVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLST 103
Query: 87 FDFLKENNYLPYSLDQVRHMSYQLIYAV 114
+DF+KEN +LP+ LD +R M+YQ+ +V
Sbjct: 104 YDFIKENGFLPFRLDHIRKMAYQICKSV 131
>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41
Length = 417
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 53/85 (62%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSV 86
ALK+++N +++ A EI L+ + ++D + + ML+ F + H+C+ FE+L +++
Sbjct: 126 ALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLSMNL 185
Query: 87 FDFLKENNYLPYSLDQVRHMSYQLI 111
++ +K+N + +SL VR ++ ++
Sbjct: 186 YELIKKNKFQGFSLPLVRKFAHSIL 210
>pdb|3K2L|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine
Phosphorylation Regulated Kinase 2 (Dyrk2)
Length = 429
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 53/85 (62%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSV 86
ALK+++N +++ A EI L+ + ++D + + ML+ F + H+C+ FE+L +++
Sbjct: 126 ALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLSMNL 185
Query: 87 FDFLKENNYLPYSLDQVRHMSYQLI 111
++ +K+N + +SL VR ++ ++
Sbjct: 186 YELIKKNKFQGFSLPLVRKFAHSIL 210
>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine
Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex
With An Indirubin Ligand
Length = 429
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 53/85 (62%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSV 86
ALK+++N +++ A EI L+ + ++D + + ML+ F + H+C+ FE+L +++
Sbjct: 126 ALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLSMNL 185
Query: 87 FDFLKENNYLPYSLDQVRHMSYQLI 111
++ +K+N + +SL VR ++ ++
Sbjct: 186 YELIKKNKFQGFSLPLVRKFAHSIL 210
>pdb|3BEG|A Chain A, Crystal Structure Of Sr Protein Kinase 1 Complexed To Its
Substrate AsfSF2
Length = 381
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPN--GRHLCVKMLDWFDYHG----HMCIAFE 80
A+K++K+ E Y E A EI L+ + DPN R + V++LD F G H+C+ FE
Sbjct: 50 AMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFE 109
Query: 81 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLI 111
+LG + ++ ++NY L V+ + Q++
Sbjct: 110 VLGHHLLKWIIKSNYQGLPLPCVKKIIQQVL 140
>pdb|1WBP|A Chain A, Srpk1 Bound To 9mer Docking Motif Peptide
pdb|1WAK|A Chain A, X-Ray Structure Of Srpk1
Length = 397
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPN--GRHLCVKMLDWFDYHG----HMCIAFE 80
A+K++K+ E Y E A EI L+ + DPN R + V++LD F G H+C+ FE
Sbjct: 66 AMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFE 125
Query: 81 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLI 111
+LG + ++ ++NY L V+ + Q++
Sbjct: 126 VLGHHLLKWIIKSNYQGLPLPCVKKIIQQVL 156
>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|B Chain B, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|C Chain C, Human Dyrk1a In Complex With Leucettine L41
Length = 382
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 50/88 (56%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSV 86
A+KIIKN + + A++E+ L+ + + D ++ V + F + H+C+ FE+L ++
Sbjct: 83 AIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNL 142
Query: 87 FDFLKENNYLPYSLDQVRHMSYQLIYAV 114
+D L+ N+ SL+ R + Q+ A+
Sbjct: 143 YDLLRNTNFRGVSLNLTRKFAQQMCTAL 170
>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|B Chain B, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|C Chain C, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|D Chain D, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2WO6|A Chain A, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
pdb|2WO6|B Chain B, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
Length = 382
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 50/88 (56%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSV 86
A+KIIKN + + A++E+ L+ + + D ++ V + F + H+C+ FE+L ++
Sbjct: 83 AIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNL 142
Query: 87 FDFLKENNYLPYSLDQVRHMSYQLIYAV 114
+D L+ N+ SL+ R + Q+ A+
Sbjct: 143 YDLLRNTNFRGVSLNLTRKFAQQMCTAL 170
>pdb|3LLT|A Chain A, Crystal Structure Of Pf14_0431, Kinase Domain
Length = 360
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSV 86
A+K+++N++KY +A++E + L+KI + D + VK F Y+ HMC+ FE LG S+
Sbjct: 64 AVKVVRNIKKYTRSAKIEADILKKI-QNDDINNNNIVKYHGKFMYYDHMCLIFEPLGPSL 122
Query: 87 FDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
++ + NNY + ++ ++ +++ A+
Sbjct: 123 YEIITRNNYNGFHIEDIKLYCIEILKALN 151
>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|B Chain B, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|C Chain C, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|D Chain D, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANR|A Chain A, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|B Chain B, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|C Chain C, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|D Chain D, Human Dyrk1aHARMINE COMPLEX
Length = 368
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 50/88 (56%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSV 86
A+KIIKN + + A++E+ L+ + + D ++ V + F + H+C+ FE+L ++
Sbjct: 64 AIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNL 123
Query: 87 FDFLKENNYLPYSLDQVRHMSYQLIYAV 114
+D L+ N+ SL+ R + Q+ A+
Sbjct: 124 YDLLRNTNFRGVSLNLTRKFAQQMCTAL 151
>pdb|2X7G|A Chain A, Structure Of Human Serine-Arginine-Rich Protein-Specific
Kinase 2 (Srpk2) Bound To Purvalanol B
Length = 389
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPN--GRHLCVKMLDWFDYHG----HMCIAFE 80
A+K++K+ + Y E A EI L+ + E DP+ + + V+++D F G H+C+ FE
Sbjct: 60 AMKVVKSAQHYTETALDEIKLLKCVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFE 119
Query: 81 ILGLSVFDFLKENNY 95
+LG + ++ ++NY
Sbjct: 120 VLGHHLLKWIIKSNY 134
>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase
In Yeast
pdb|2JD5|A Chain A, Sky1p Bound To Npl3p-Derived Substrate Peptide
pdb|2JD5|B Chain B, Sky1p Bound To Npl3p-Derived Substrate Peptide
Length = 373
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPN-----GRHLCVKMLDWFDYHG----HMCI 77
A+KI++ + Y EAA EI LQ++ + D G + +K+LD F++ G H+ +
Sbjct: 48 AMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVM 107
Query: 78 AFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAV 114
FE+LG ++ +K+ + L V+ +S QL+ +
Sbjct: 108 VFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGL 144
>pdb|1Q8Y|A Chain A, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With
Bound Adp
pdb|1Q8Y|B Chain B, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With
Bound Adp
pdb|1Q8Z|A Chain A, The Apoenzyme Structure Of The Yeast Sr Protein Kinase,
Sky1p
pdb|1Q8Z|B Chain B, The Apoenzyme Structure Of The Yeast Sr Protein Kinase,
Sky1p
pdb|1Q97|A Chain A, The Structure Of The Saccharomyces Cerevisiae Sr Protein
Kinase, Sky1p, With Bound Atp
pdb|1Q97|B Chain B, The Structure Of The Saccharomyces Cerevisiae Sr Protein
Kinase, Sky1p, With Bound Atp
pdb|1Q99|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Sr
Protein Kinsae, Sky1p, Complexed With The
Non-Hydrolyzable Atp Analogue, Amp-Pnp
pdb|1Q99|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Sr
Protein Kinsae, Sky1p, Complexed With The
Non-Hydrolyzable Atp Analogue, Amp-Pnp
Length = 373
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPN-----GRHLCVKMLDWFDYHG----HMCI 77
A+KI++ + Y EAA EI LQ++ + D G + +K+LD F++ G H+ +
Sbjct: 48 AMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVM 107
Query: 78 AFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAV 114
FE+LG ++ +K+ + L V+ +S QL+ +
Sbjct: 108 VFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGL 144
>pdb|2BZG|A Chain A, Crystal Structure Of Thiopurine S-Methyltransferase
Length = 232
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 61 LCVKMLD--WFDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIY 112
LC K ++ WF GH + EI L + +F E N L YS + + + ++
Sbjct: 56 LCGKAVEXKWFADRGHSVVGVEISELGIQEFFTEQN-LSYSEEPITEIPGTKVF 108
>pdb|2H11|A Chain A, Amino-Terminal Truncated Thiopurine S-Methyltransferase
Complexed With S-Adenosyl-L-Homocysteine
pdb|2H11|B Chain B, Amino-Terminal Truncated Thiopurine S-Methyltransferase
Complexed With S-Adenosyl-L-Homocysteine
Length = 232
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 61 LCVKMLD--WFDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIY 112
LC K ++ WF GH + EI L + +F E N L YS + + + ++
Sbjct: 56 LCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQN-LSYSEEPITEIPGTKVF 108
>pdb|1DFB|H Chain H, Structure Of A Human Monoclonal Antibody Fab Fragment
Against Gp41 Of Human Immunodeficiency Virus Type I
Length = 229
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 60 HLCVKMLDWFDYHGHMCIAFEILG 83
+ CVK D++D G+ +AF+I G
Sbjct: 94 YYCVKGRDYYDSGGYFTVAFDIWG 117
>pdb|2GB4|A Chain A, Crystal Structure Of Thiopurine Methyltransferase
(18204406) From Mus Musculus At 1.35 A Resolution
pdb|2GB4|B Chain B, Crystal Structure Of Thiopurine Methyltransferase
(18204406) From Mus Musculus At 1.35 A Resolution
Length = 252
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 61 LCVKMLD--WFDYHGHMCIAFEILGLSVFDFLKENN 94
LC K ++ WF GH + EI + + +F E N
Sbjct: 76 LCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQN 111
>pdb|3BGD|A Chain A, Thiopurine S-Methyltransferase
pdb|3BGD|B Chain B, Thiopurine S-Methyltransferase
pdb|3BGI|A Chain A, Thiopurine S-Methyltransferase
pdb|3BGI|B Chain B, Thiopurine S-Methyltransferase
Length = 260
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 61 LCVKMLD--WFDYHGHMCIAFEILGLSVFDFLKENN 94
LC K ++ WF GH + EI + + +F E N
Sbjct: 84 LCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQN 119
>pdb|2JWP|A Chain A, Malectin
Length = 174
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 49 QKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSV 86
QK+ + NG H VK LD FD GH EI+ +S+
Sbjct: 95 QKVFDVRVNG-HTVVKDLDIFDRVGHSTAHDEIIPISI 131
>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
(Glcalpha1- 3glc)
pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
(Glcalpha1-4glc)
Length = 190
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 49 QKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSV 86
QK+ + NG H VK LD FD GH EI+ +S+
Sbjct: 99 QKVFDVRVNG-HTVVKDLDIFDRVGHSTAHDEIIPISI 135
>pdb|3KBG|A Chain A, Crystal Structure Of The 30s Ribosomal Protein S4e From
Thermoplasma Acidophilum. Northeast Structural Genomics
Consortium Target Tar28
Length = 213
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 35 EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGH 74
+K REAAR+ N L K+ K + V D + +G
Sbjct: 22 DKEREAARILANGLVKVDGKTVREKKFAVGFXDVIEINGE 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,805,133
Number of Sequences: 62578
Number of extensions: 102855
Number of successful extensions: 268
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 31
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)