RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17424
(117 letters)
>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 254
Score = 61.8 bits (151), Expect = 1e-12
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 25 VVALKIIK--NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 82
+VA+K+IK ++K RE EI L+K+ K PN V++ D F+ + + E
Sbjct: 26 LVAIKVIKKKKIKKDRERILREIKILKKL--KHPN----IVRLYDVFEDEDKLYLVMEYC 79
Query: 83 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
G +FD LK+ L D+ R Q++ A++
Sbjct: 80 EGGDLFDLLKKRGRLS--EDEARFYLRQILSALE 111
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 51.1 bits (123), Expect = 7e-09
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 25 VVALKIIK--NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 82
VA+KIIK + E EI L+K+ PN VK+ F+ H+ + E
Sbjct: 20 KVAIKIIKKEDSSSLLEELLREIEILKKL--NHPN----IVKLYGVFEDENHLYLVMEYC 73
Query: 83 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
G S+ D LKEN S D++ + Q++ ++
Sbjct: 74 EGGSLKDLLKENEG-KLSEDEILRILLQILEGLE 106
>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain.
Length = 260
Score = 49.6 bits (119), Expect = 3e-08
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 25 VVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI 81
+VA+KI+K K + AR EI L+++ PN V+++D F+ H+ + E
Sbjct: 26 IVAVKILKKRSEKSKKDQTARREIRILRRL--SHPNI----VRLIDAFEDKDHLYLVMEY 79
Query: 82 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
G +FD+L P S D+ + ++ Q++ ++
Sbjct: 80 CEGGDLFDYLSRGG--PLSEDEAKKIALQILRGLE 112
>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional.
Length = 467
Score = 46.9 bits (111), Expect = 3e-07
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
Query: 27 ALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWF-DYHGHMCIAFEILGLS 85
A+KI++NV KY A++EI ++K+ + DP R +K+ +F + GHMCI G
Sbjct: 158 AVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMPKYGPC 217
Query: 86 VFDFLKENNYLPYSLDQVRHMSYQLIYAV 114
+ D++ ++ P+S RH++ Q+I+
Sbjct: 218 LLDWIMKHG--PFSH---RHLA-QIIFQT 240
>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ
cell-Associated Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Male germ
cell-Associated Kinase (MAK)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of human MAK and
MAK-related kinase (MRK), Saccharomyces cerevisiae
Ime2p, Schizosaccharomyces pombe Mei4-dependent protein
3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5,
Arabidopsis thaliana MHK, and similar proteins. These
proteins play important roles during meiosis. MAK is
highly expressed in testicular cells specifically in the
meiotic phase, but is not essential for spermatogenesis
and fertility. It functions as a coactivator of the
androgen receptor in prostate cells. MRK, also called
Intestinal Cell Kinase (ICK), is expressed ubiquitously,
with highest expression in the ovary and uterus. A
missense mutation in MRK causes
endocrine-cerebro-osteodysplasia (ECO), suggesting that
this protein plays an important role in the development
of many organs. MAK and MRK may be involved in
regulating cell cycle and cell fate. Ime2p is a
meiosis-specific kinase that is important during meiotic
initiation and during the later stages of meiosis. Mde3
functions downstream of the transcription factor Mei-4
which is essential for meiotic prophase I.
Length = 283
Score = 40.2 bits (95), Expect = 7e-05
Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 25 VVALKIIKN-VEKYREAARL-EINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 82
+VA+K +K + E L E+ +L+K+ ++ VK+ + F + + FE +
Sbjct: 26 LVAIKKMKKKFYSWEECMNLREVKSLRKL----NEHPNI-VKLKEVFRENDELYFVFEYM 80
Query: 83 GLSVFDFLKENNYLPYSLDQVRHMSYQLI 111
+++ +K+ P+S +R + YQ++
Sbjct: 81 EGNLYQLMKDRKGKPFSESVIRSIIYQIL 109
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
protein Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase (CDK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis
by CDK1. They also exhibit overlapping cyclin
specificity and functions in certain conditions.
Knockout mice with a single CDK deleted remain viable
with specific phenotypes, showing that some CDKs can
compensate for each other. For example, CDK4 can
compensate for the loss of CDK6, however, double
knockout mice with both CDK4 and CDK6 deleted die in
utero. CDK8 and CDK9 are mainly involved in
transcription while CDK5 is implicated in neuronal
function. CDK7 plays essential roles in both the cell
cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general
transcription factor TFIIH.
Length = 282
Score = 32.5 bits (75), Expect = 0.029
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 25 VVALKIIKNVEKYRE-----AARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF 79
+VALK I+ + E A R EI+ L+++ K PN VK+LD + + F
Sbjct: 26 IVALKKIRL-DNEEEGIPSTALR-EISLLKEL--KHPN----IVKLLDVIHTERKLYLVF 77
Query: 80 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAV 114
E + + +L P S + ++ + YQL+ +
Sbjct: 78 EYCDMDLKKYLD-KRPGPLSPNLIKSIMYQLLRGL 111
>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine
Kinase, Cell Cycle-Related Kinase. Serine/Threonine
Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CCRK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CCRK was previously called p42. It is a
Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK)
which is essential for the activation of CDK2. It is
indispensable for cell growth and has been implicated in
the progression of glioblastoma multiforme. In the
heart, a splice variant of CCRK with a different
C-terminal half is expressed, this variant promotes
cardiac cell growth and survival and is significantly
down-regulated during the development of heart failure.
Length = 286
Score = 29.2 bits (66), Expect = 0.44
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 25 VVALKIIKNVEKY----REAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 80
VALK + +A R EI ALQ + P VK+LD F + + E
Sbjct: 27 TVALKKVALRRLEGGIPNQALR-EIKALQAC--QHPY----VVKLLDVFPHGSGFVLVME 79
Query: 81 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
+ + + L++ P QV+ L+ V
Sbjct: 80 YMPSDLSEVLRDEER-PLPEAQVKSYMRMLLKGVA 113
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of
other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Class III
myosins are motor proteins with an N-terminal kinase
catalytic domain and a C-terminal actin-binding motor
domain. Class III myosins are present in the
photoreceptors of invertebrates and vertebrates and in
the auditory hair cells of mammals. The kinase domain
of myosin III can phosphorylate several cytoskeletal
proteins, conventional myosin regulatory light chains,
and can autophosphorylate the C-terminal motor domain.
Myosin III may play an important role in maintaining
the structural integrity of photoreceptor cell
microvilli. It may also function as a cargo carrier
during light-dependent translocation, in photoreceptor
cells, of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated
protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4
or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are
involved in some MAPK signaling pathways by activating
a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each
MAPK cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAPK signaling cascades are important
in mediating cellular responses to extracellular
signals.
Length = 275
Score = 29.2 bits (66), Expect = 0.45
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 11 TVSRVSRTV-SRVDSVVALKIIKNVEKYREAARLEINALQK 50
T +V + + +VA+KI+ +E E + E N L+K
Sbjct: 18 TYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRK 58
>gnl|CDD|236551 PRK09533, PRK09533, bifunctional transaldolase/phosoglucose
isomerase; Validated.
Length = 948
Score = 28.4 bits (64), Expect = 0.87
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 8 VSRTVSRVSRTVSRVDSVVALKI---IKNVEKYREAARLE 44
S S S VSR+DS V ++ I E A LE
Sbjct: 193 PSHVASVASFFVSRIDSAVDKRLDEKIAAANDPAEKAALE 232
>gnl|CDD|188453 TIGR03938, deacetyl_PgaB, poly-beta-1,6-N-acetyl-D-glucosamine
N-deacetylase PgaB. Two well-characterized systems
produce polysaccharide based on N-acetyl-D-glucosamine
in straight chains with beta-1,6 linkages. These are
encoded by the icaADBC operon in Staphylococcus species,
where the system is designated polysaccharide
intercellular adhesin (PIA), and the pgaABCD operon in
Gram-negative bacteria such as E. coli. Both systems
include a putative polysaccharide deacetylase. The PgaB
protein, described here, contains an additional domain
lacking from its Gram-positive counterpart IcaB
(TIGR03933). Deacetylation by this protein appears
necessary to allow export through the porin PgaA [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 619
Score = 27.3 bits (61), Expect = 2.2
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 87 FDFLKENNYLPYSLDQV 103
F++L++N Y P S+DQ+
Sbjct: 33 FNWLRQNGYHPVSVDQI 49
>gnl|CDD|143806 pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP)
signalling domain. This domain is thought to transduce
the signal to CheA since it is highly conserved in very
diverse MCPs.
Length = 213
Score = 26.6 bits (59), Expect = 2.7
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 1 MSRTVSRVSRTVSRVSRTVSRVDSVV 26
++ S + +V++ V+R+D V
Sbjct: 154 IAAASDEQSAGIDQVNQAVARIDQVT 179
>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 1 and 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 1 (CDKL1) and CDKL4 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL1 and CDKL4
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL1, also called
p42 KKIALRE, is a glial protein that is upregulated in
gliosis. It is present in neuroblastoma and A431 human
carcinoma cells, and may be implicated in neoplastic
transformation. The function of CDKL4 is unknown.
Length = 286
Score = 26.2 bits (58), Expect = 4.8
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 35 EKYREAARLEINALQKIGEKDPNGRHLCVKMLD 67
K+ + ++ L+ + DP R C ++L+
Sbjct: 250 SKFPNISSPALSFLKGCLQMDPTERLSCEELLE 282
>gnl|CDD|152475 pfam12040, DUF3526, Domain of unknown function (DUF3526). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is typically
between 149 to 170 amino acids in length. This domain
has a single completely conserved residue P that may be
functionally important.
Length = 158
Score = 25.4 bits (56), Expect = 6.7
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 1 MSRTVSRVSRTVS--RVSRTVSRVDSVVALKIIKNVEKYREAARLEINALQ 49
++R +S T++ R S ++ D ++ E YR R +N L
Sbjct: 81 LARRFGLLSPTLALQRASMALAGTDLAAHRAFLEQAEAYRRQLRQFLNDLD 131
>gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA
dehydrogenase/thioesterase; Validated.
Length = 495
Score = 25.9 bits (57), Expect = 6.8
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 66 LDWFDYHGHM 75
W DY+GHM
Sbjct: 354 PAWVDYNGHM 363
>gnl|CDD|183921 PRK13255, PRK13255, thiopurine S-methyltransferase; Reviewed.
Length = 218
Score = 25.6 bits (57), Expect = 7.2
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 61 LCVKMLD--WFDYHGHMCIAFEILGLSVFDFLKENNYLP 97
LC K LD W GH + E+ L+V F EN P
Sbjct: 45 LCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTP 83
>gnl|CDD|224286 COG1367, COG1367, CRISPR system related protein, RAMP superfamily
[Defense mechanisms].
Length = 393
Score = 25.7 bits (56), Expect = 7.4
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 12/89 (13%)
Query: 22 VDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI 81
V S I K K +++++I L+ PN C + FE
Sbjct: 189 VISEKQEHIRKLKNKVNSSSKVKIKLLRTNFIGIPNFPCFCDYKI------------FEY 236
Query: 82 LGLSVFDFLKENNYLPYSLDQVRHMSYQL 110
+ N Y D ++ M L
Sbjct: 237 SKFRGVFNVGRNFKGWYEGDSLKDMVEAL 265
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.398
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,864,160
Number of extensions: 510181
Number of successful extensions: 716
Number of sequences better than 10.0: 1
Number of HSP's gapped: 710
Number of HSP's successfully gapped: 26
Length of query: 117
Length of database: 10,937,602
Length adjustment: 80
Effective length of query: 37
Effective length of database: 7,389,282
Effective search space: 273403434
Effective search space used: 273403434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.0 bits)