RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17424
(117 letters)
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase,
splicing, human, 10Z-hymendialdisine, structural
genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Length = 339
Score = 149 bits (379), Expect = 8e-46
Identities = 49/90 (54%), Positives = 69/90 (76%)
Query: 26 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 85
VA+KI+KNV++Y EAAR EI L+ + DPN CV+ML+WF++HGH+CI FE+LGLS
Sbjct: 43 VAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLS 102
Query: 86 VFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
+DF+KEN +LP+ LD +R M+YQ+ +V
Sbjct: 103 TYDFIKENGFLPFRLDHIRKMAYQICKSVN 132
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase;
1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A
3nr9_A*
Length = 355
Score = 149 bits (377), Expect = 2e-45
Identities = 62/92 (67%), Positives = 75/92 (81%)
Query: 24 SVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG 83
S VALKII+NV KYREAARLEIN L+KI EKD + LCV M DWF++HGHMCIAFE+LG
Sbjct: 46 SQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG 105
Query: 84 LSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
+ F+FLKENN+ PY L VRHM+YQL +A++
Sbjct: 106 KNTFEFLKENNFQPYPLPHVRHMAYQLCHALR 137
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria,
structural GE structural genomics consortium, SGC,
transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Length = 360
Score = 145 bits (367), Expect = 8e-44
Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 26 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 85
A+K+++N++KY +A++E + L+KI D N + VK F Y+ HMC+ FE LG S
Sbjct: 63 YAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNN-IVKYHGKFMYYDHMCLIFEPLGPS 121
Query: 86 VFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
+++ + NNY + ++ ++ +++ A+
Sbjct: 122 LYEIITRNNYNGFHIEDIKLYCIEILKALN 151
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A;
serine/threonine-protein kinase, minibrain homolog,
nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A
{Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Length = 382
Score = 135 bits (343), Expect = 4e-40
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 23 DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 82
VA+KIIKN + + A++E+ L+ + + D ++ V + F + H+C+ FE+L
Sbjct: 79 QEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEML 138
Query: 83 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
+++D L+ N+ SL+ R + Q+ A+
Sbjct: 139 SYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALL 171
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2;
KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase,
structural genomics consortium; HET: SEP PTR IRB; 2.28A
{Homo sapiens} PDB: 3k2l_A*
Length = 429
Score = 136 bits (344), Expect = 7e-40
Identities = 24/93 (25%), Positives = 55/93 (59%)
Query: 23 DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 82
VALK+++N +++ A EI L+ + ++D + + ML+ F + H+C+ FE+L
Sbjct: 122 HQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELL 181
Query: 83 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
+++++ +K+N + +SL VR ++ ++ +
Sbjct: 182 SMNLYELIKKNKFQGFSLPLVRKFAHSILQCLD 214
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces
cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A*
1how_A 2jd5_A
Length = 373
Score = 122 bits (309), Expect = 4e-35
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 26 VALKIIKNVEKYREAARLEINALQKIGEKDPN-----GRHLCVKMLDWFDYHG----HMC 76
VA+KI++ + Y EAA EI LQ++ + D G + +K+LD F++ G H+
Sbjct: 47 VAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVV 106
Query: 77 IAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
+ FE+LG ++ +K+ + L V+ +S QL+ +
Sbjct: 107 MVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLD 145
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase,
alternative splicing, ATP-binding, chromosome partition,
differentiation, mRNA processing; 1.73A {Homo sapiens}
PDB: 1wbp_A* 3beg_A* 2x7g_A*
Length = 397
Score = 108 bits (270), Expect = 2e-29
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 26 VALKIIKNVEKYREAARLEINALQKIGEKDPN--GRHLCVKMLDWFDYHG----HMCIAF 79
VA+K++K+ E Y E A EI L+ + DPN R + V++LD F G H+C+ F
Sbjct: 65 VAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVF 124
Query: 80 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAV 114
E+LG + ++ ++NY L V+ + Q++ +
Sbjct: 125 EVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGL 159
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros
picked threonine kinase, SGC, structural genomics
consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB:
3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Length = 313
Score = 47.3 bits (113), Expect = 1e-07
Identities = 15/106 (14%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 13 SRVSRTVSRVDSVVALKII---KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWF 69
S+V + ++ + A+K + + + ++ R EI L K+ + + + +++ D+
Sbjct: 42 SKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKL--QQHSDK--IIRLYDYE 97
Query: 70 DYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
++ + E + + +LK+ + + + ++ AV
Sbjct: 98 ITDQYIYMVMECGNIDLNSWLKKKKSID--PWERKSYWKNMLEAVH 141
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase
activation, phosphorylation, ATP- binding,
nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Length = 343
Score = 46.6 bits (111), Expect = 2e-07
Identities = 15/106 (14%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 13 SRVSRTVSRVDSVVALKII---KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWF 69
S+V + ++ + A+K + + + ++ R EI L K+ + + + +++ D+
Sbjct: 23 SKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKL--QQHSDK--IIRLYDYE 78
Query: 70 DYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
++ + E + + +LK+ + + + ++ AV
Sbjct: 79 ITDQYIYMVMECGNIDLNSWLKKKKSID--PWERKSYWKNMLEAVH 122
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding,
nucleotide-bindi phosphoprotein,
serine/threonine-protein kinase; HET: 537 7PE; 2.88A
{Homo sapiens} PDB: 2zmc_A*
Length = 390
Score = 46.3 bits (110), Expect = 3e-07
Identities = 15/106 (14%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 13 SRVSRTVSRVDSVVALKII---KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWF 69
S+V + ++ + A+K + + + ++ R EI L K+ + + + +++ D+
Sbjct: 70 SKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKL--QQHSDK--IIRLYDYE 125
Query: 70 DYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
++ + E + + +LK+ + + + ++ AV
Sbjct: 126 ITDQYIYMVMECGNIDLNSWLKKKKSID--PWERKSYWKNMLEAVH 169
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
inhibitory kinase; structural genomics, structural
genomics consortium, SGC; 1.70A {Homo sapiens}
Length = 311
Score = 41.9 bits (99), Expect = 1e-05
Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 13 SRVSRTVSRVDS-VVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDW 68
V + S+ D + A+K + K R E+ + +K+G + P CV++
Sbjct: 71 GEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVG-QHPC----CVRLEQA 125
Query: 69 FDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
++ G + + E+ G S+ + QV + A+
Sbjct: 126 WEEGGILYLQTELCGPSLQQHCEAWG-ASLPEAQVWGYLRDTLLALA 171
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1,
peptide drug, prostate cancer, transferase; HET: ANP;
1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A*
3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A*
2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A*
3cxw_A* 3cy3_A* 2bik_B* ...
Length = 320
Score = 40.4 bits (95), Expect = 3e-05
Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 26 VALKII--KNVEKYREAA-----RLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA 78
VA+K + + + E +E+ L+K+ +++LDWF+ +
Sbjct: 71 VAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG----VIRLLDWFERPDSFVLI 126
Query: 79 FEILGLS--VFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
E +FDF+ E L + R +Q++ AV+
Sbjct: 127 LERPEPVQDLFDFITERGAL--QEELARSFFWQVLEAVR 163
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer,
leukemia, transferase, ATP-binding, proto- oncogene,
phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Length = 312
Score = 38.4 bits (90), Expect = 2e-04
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 17/101 (16%)
Query: 26 VALKII-----KNVEKYREAARL--EINALQKIGEKD--PNGRHLCVKMLDWFDYHGHMC 76
VA+K+I ++ E+ L K+G P +++LDWF+
Sbjct: 59 VAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPG----VIRLLDWFETQEGFM 114
Query: 77 IAFE--ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
+ E + +FD++ E L R Q++ A+Q
Sbjct: 115 LVLERPLPAQDLFDYITEKGPL--GEGPSRCFFGQVVAAIQ 153
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1;
protein-nucleotide complex, ATP-binding, endoplasmic
reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces
cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A*
3sdj_A*
Length = 434
Score = 35.1 bits (81), Expect = 0.002
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 12/95 (12%)
Query: 26 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 85
VA+K + ++ A EI L + + PN ++ + IA E+ L+
Sbjct: 42 VAVKRM-LIDFCDIALM-EIKLLTESDDH-PN----VIRYYCSETTDRFLYIALELCNLN 94
Query: 86 VFDFLKENNYLPYSLDQV-----RHMSYQLIYAVQ 115
+ D ++ N +L + Q+ V
Sbjct: 95 LQDLVESKNVSDENLKLQKEYNPISLLRQIASGVA 129
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain,
kinase and RNAse function, ATP binding ssRNA
dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo
sapiens}
Length = 432
Score = 34.4 bits (79), Expect = 0.005
Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 26 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 85
VA+K I E + A R E+ L++ ++ PN ++ IA E+ +
Sbjct: 51 VAVKRI-LPECFSFADR-EVQLLRES-DEHPN----VIRYFCTEKDRQFQYIAIELCAAT 103
Query: 86 VFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
+ +++++ ++ + + + Q +
Sbjct: 104 LQEYVEQKDF-AHLGLEPITLLQQTTSGLA 132
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1,
selectivity residues, POLO-like K structure based drug
design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo
sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A*
3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A*
3db6_A* 3dbe_A* 3dbf_A*
Length = 294
Score = 32.2 bits (74), Expect = 0.022
Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
Query: 25 VVALKII--KNVEKYREAARL--EINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 80
V A KI+ + K + ++ EI+ + + + V +F+ + + + E
Sbjct: 42 VFAGKIVPKSLLLKPHQREKMSMEISIHRSL--AHQH----VVGFHGFFEDNDFVFVVLE 95
Query: 81 I-LGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
+ S+ + K L + + R+ Q++ Q
Sbjct: 96 LCRRRSLLELHKRRKAL--TEPEARYYLRQIVLGCQ 129
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal
transduction, acid starvation, starvation stress
response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A*
1zyd_A* 1zyc_A* 1zxe_A
Length = 303
Score = 31.5 bits (72), Expect = 0.036
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 13/101 (12%)
Query: 25 VVALKIIKNVEKYREAARLEINALQKIGEKDPN---------GRHLCVKMLDWFDYHGHM 75
A+K I++ E+ E+ L + R VK + +
Sbjct: 33 YYAIKKIRHTEEKLSTILSEVMLLASL--NHQYVVRYYAAWLERRNFVKPMTAVKKKSTL 90
Query: 76 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
I E +++D + N L D+ + Q++ A+
Sbjct: 91 FIQMEYCENGTLYDLIHSEN-LNQQRDEYWRLFRQILEALS 130
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens}
SCOP: d.144.1.7
Length = 321
Score = 29.5 bits (67), Expect = 0.20
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 26 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE-ILGL 84
K +K + + EI+ L N + + + F+ + + FE I GL
Sbjct: 33 YMAKFVKVKGTDQVLVKKEISILNIARH--RN----ILHLHESFESMEELVMIFEFISGL 86
Query: 85 SVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
+F+ + + + + ++ +Q+ A+Q
Sbjct: 87 DIFERINTSAF-ELNEREIVSYVHQVCEALQ 116
>2a19_B Interferon-induced, double-stranded RNA-activated kinase;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Homo sapiens}
PDB: 2a1a_B*
Length = 284
Score = 28.4 bits (64), Expect = 0.49
Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 18/104 (17%)
Query: 25 VVALKIIKNVEKYREAARLEINALQKIGEKDPN------------GRHLCVKMLDWFDYH 72
+K +K E A E+ AL K+ N
Sbjct: 38 TYVIKRVK---YNNEKAEREVKALAKL--DHVNIVHYNGCWDGFDYDPETSSKNSSRSKT 92
Query: 73 GHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
+ I E ++ ++++ + Q+ V
Sbjct: 93 KCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVD 136
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural
genomics, midwest center for structural genomics; HET:
PGE; 2.49A {Geobacter sulfurreducens}
Length = 114
Score = 27.6 bits (62), Expect = 0.56
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 51 IGEKDPNGRHLCV--KMLDWFDYHGHMCIAFEILGLSVFDFLKE 92
+ D R+L V + + + +ILG+S +D E
Sbjct: 16 LAMFDREMRYLAVSRRWREDYGLGDG-----DILGMSHYDIFPE 54
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.69
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 26/114 (22%)
Query: 11 TVSRVSRTVSRVDSVVAL--KIIKNVE---KYREAARLEINALQK-----IGEKD-PNG- 58
+ + + ++ + L +I N + +L I+++Q + K N
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 59 ---RHLC-VKMLDWFDYHGHMCIAFEIL----GLSVFDFLKENNYLPYSLDQVR 104
++ K + F+ C +IL V DFL SLD
Sbjct: 248 LVLLNVQNAKAWNAFNLS---C---KILLTTRFKQVTDFLSAATTTHISLDHHS 295
Score = 25.6 bits (55), Expect = 5.2
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 34 VEKYREAARLEINALQ-KIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSVFD--FL 90
VEK + + + I ++ ++ K N L ++D Y+ + L D F
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQYFY 474
Query: 91 KENNYLPYSLDQVRH 105
+++ + L + H
Sbjct: 475 ---SHIGHHLKNIEH 486
Score = 25.6 bits (55), Expect = 5.3
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 6 SRVSRTVSRVSRTVSRVDSVVALK-----IIKNVEKYREAARLEINALQKIGEKDPNGRH 60
++ + + + S ++++ LK I N KY ++ L KI E ++
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 61 LCV 63
+
Sbjct: 565 TDL 567
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3;
transferase, pseudo kinase domain, vaccinia related
kinase, ATP-binding; 2.00A {Homo sapiens}
Length = 352
Score = 27.8 bits (62), Expect = 0.91
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 38 REAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG--HMCIAFEILGLSVFDFLKENNY 95
R A L++N +K+ L + F H + + LG S+ L +
Sbjct: 98 RAAKPLQVNKWKKLYSTP----LLAIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVSPK 153
Query: 96 LPYSLDQVRHMSYQLIYAVQ 115
S V ++ +L+ A++
Sbjct: 154 HVLSERSVLQVACRLLDALE 173
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba
histolytica}
Length = 487
Score = 27.2 bits (61), Expect = 1.2
Identities = 5/44 (11%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 10 RTVSRVSRTVSR--VDSVVALKIIKNVEKYREAARLEINALQKI 51
+ + V+ + VA ++ + A +I ++
Sbjct: 412 GIFPKEAADVAMQAIKDGVARVTDLTWQQVYDIAEHDIKEARES 455
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor,
spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis
compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB:
3kga_A* 3m42_A*
Length = 299
Score = 27.3 bits (61), Expect = 1.3
Identities = 16/95 (16%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 26 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD----YHGHMCIAFEI 81
ALK++++ K R E+ + + P+ V+++D ++ + I E
Sbjct: 46 FALKMLQDCPKARR----EVELHWRAS-QCPH----IVRIVDVYENLYAGRKCLLIVMEC 96
Query: 82 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
L G +F +++ ++ + + + A+Q
Sbjct: 97 LDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 131
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 1.7
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 10/58 (17%)
Query: 31 IKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSVFD 88
+ E + EA A Q+ G + A GL++ D
Sbjct: 1289 ERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAP----------LRGALATYGLTIDD 1336
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 1.8
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 27/84 (32%)
Query: 49 QKIG------EKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSVFDFLKENNYLPYSLD- 101
Q+ G + + + + D H + G S+ D + N P +L
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRA----DNH-----FKDTYGFSILDIVINN---PVNLTI 1674
Query: 102 --------QVRHMSYQLIYAVQDD 117
++R +I+ D
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETIVD 1698
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 26.2 bits (58), Expect = 3.2
Identities = 16/95 (16%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 26 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD----YHGHMCIAFEI 81
ALK++++ K R E+ + + P+ V+++D ++ + I E
Sbjct: 90 FALKMLQDCPKARR----EVELHWRAS-QCPH----IVRIVDVYENLYAGRKCLLIVMEC 140
Query: 82 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAVQ 115
L G +F +++ ++ + + + A+Q
Sbjct: 141 LDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 175
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase,
transferase; HET: ANP; 2.60A {Plasmodium falciparum}
PDB: 2pmn_X* 2pmo_X*
Length = 348
Score = 25.8 bits (57), Expect = 3.4
Identities = 13/113 (11%), Positives = 34/113 (30%), Gaps = 27/113 (23%)
Query: 26 VALKIIK--NVEKYREAARLEINALQKIGEKD--------------PNGRHLCVKMLDWF 69
ALK + +EK R+ + + + + D C+
Sbjct: 57 YALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEY----CLTCEGII 112
Query: 70 DYHGHMCIAFE-ILGLSVFDFLKENNYL------PYSLDQVRHMSYQLIYAVQ 115
+ + I +E + S+ F + L + ++ + ++ +
Sbjct: 113 TNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFS 165
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein
structure initiative II(PSI II), NYSGXRC, structural
genomics; 2.33A {Silicibacter pomeroyi}
Length = 344
Score = 25.2 bits (56), Expect = 6.1
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 4 TVSRVSRTVSRVS-RTVSRVDSVVA 27
TVSRV R VS T +RV +
Sbjct: 26 TVSRVLRNRGDVSDATRARVLAAAK 50
>3h5o_A Transcriptional regulator GNTR; transcription regulator,
GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding;
2.30A {Chromobacterium violaceum}
Length = 339
Score = 24.8 bits (55), Expect = 7.6
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 4 TVSRVSRTVSRVS-RTVSRVDSVVA 27
TVSRV +VS + +V V
Sbjct: 20 TVSRVLNQPQQVSEQLREKVMQAVD 44
>3e3m_A Transcriptional regulator, LACI family; structural genomics,
DNA-binding, plasmid, transcription regulation, PSI-2;
1.60A {Silicibacter pomeroyi}
Length = 355
Score = 24.8 bits (55), Expect = 8.3
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 4 TVSRVSRTVSRVS-RTVSRVDSVVA 27
TVSR + S +S T R+ VV
Sbjct: 28 TVSRALKKDSPISSETRERILKVVK 52
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A
{Clostridium cellulolyticum} SCOP: a.102.1.2 PDB:
1ia7_A*
Length = 441
Score = 24.7 bits (54), Expect = 8.5
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 17/93 (18%)
Query: 26 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE--ILG 83
+ L I + Y++A N + P G L W G + A ++
Sbjct: 265 LRLAQITGKQIYKDAIEFNFNYWKTQVTTTPGG-------LKWLSNWGVLRYAAAESMVM 317
Query: 84 LSVFDFLKENNYLPYSLDQV--------RHMSY 108
L + + L + QV +MSY
Sbjct: 318 LVYCKQNPDQSLLDLAKKQVDYILGDNPANMSY 350
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation
factor domain, heparin binding domain, angiogene protein
binding-cytokine complex; 2.65A {Homo sapiens} PDB:
1kmx_A 1vgh_A 2vgh_A
Length = 218
Score = 24.6 bits (53), Expect = 9.5
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 53 EKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIY 112
K R + +K W + + FE+ G + D++ + + +
Sbjct: 127 PKPLITRFVRIKPATW---ETGISMRFEVYGCKITDYVDGSGSGSPCGPCSERRKHLFVQ 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.398
Gapped
Lambda K H
0.267 0.0565 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,801,202
Number of extensions: 100431
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 46
Length of query: 117
Length of database: 6,701,793
Length adjustment: 80
Effective length of query: 37
Effective length of database: 4,468,113
Effective search space: 165320181
Effective search space used: 165320181
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)