RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17425
(84 letters)
>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 40.3 bits (93), Expect = 4e-06
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 7 KIINFHFPPSQEKIVTMSTIHPTRDLHSELVGNQHLPDDQARKVLQLKDLLDKILMLDTS 66
+I P++E+ +M+ + P + L + + +DLL +L +
Sbjct: 214 RIFRLLGTPTEEQWPSMTKL-PDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPV 272
Query: 67 KRLPINQALTHPFI 80
+R+ +AL HP+
Sbjct: 273 QRISAEEALQHPYF 286
>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9
{Human (Homo sapiens) [TaxId: 9606]}
Length = 318
Score = 38.0 bits (87), Expect = 3e-05
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 7 KIINFHFPPSQEKIVTMSTIHPTRDLHSELVGNQHLPDDQARKVL--QLKDLLDKILMLD 64
I + E + L + + D V DL+DK+L+LD
Sbjct: 233 LISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLD 292
Query: 65 TSKRLPINQALTHPFILE 82
++R+ + AL H F
Sbjct: 293 PAQRIDSDDALNHDFFWS 310
>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 345
Score = 37.9 bits (87), Expect = 3e-05
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 7 KIINFHFPPSQEKIVTMSTIHPTRDLHSELVGNQHLPDDQARKV-LQLKDLLDKILMLDT 65
I+ PSQE + + + L S N+ + + DLLDK+L +
Sbjct: 224 HILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNP 283
Query: 66 SKRLPINQALTHPFILE 82
KR+ + QAL HP++ +
Sbjct: 284 HKRIEVEQALAHPYLEQ 300
>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 37.1 bits (85), Expect = 6e-05
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 6 FKIINFHFPPSQEKIVTMSTIHPTRDLHSELVGNQHLPDDQARKVLQLKDLLDKILMLDT 65
+I P++E+ M ++ S H A L DL+ + + +
Sbjct: 211 TRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGD--DLLDLIQGLFLFNP 268
Query: 66 SKRLPINQALTHPFILEK 83
R+ QAL + +
Sbjct: 269 CARITATQALKMKYFSNR 286
>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 362
Score = 37.3 bits (85), Expect = 6e-05
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFILE 82
++ D L +L LD KR + HP++ +
Sbjct: 303 EISDFLSPMLQLDPRKRADAGGLVNHPWLKD 333
>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 321
Score = 36.9 bits (85), Expect = 7e-05
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFILEKI 84
+ D +D++L+ + R+ ++AL HP++ +KI
Sbjct: 233 EAMDFVDRLLVKERKSRMTASEALQHPWLKQKI 265
>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 348
Score = 36.8 bits (84), Expect = 8e-05
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 7 KIINFHFPPSQEKIVTMSTIHPTRDLHSELVGNQHLPDDQARKV-LQLKDLLDKILMLDT 65
I+ P E + +S+ + S + + DLL+K+L+LD+
Sbjct: 230 LILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDS 289
Query: 66 SKRLPINQALTHPFILE 82
KR+ QAL H + +
Sbjct: 290 DKRITAAQALAHAYFAQ 306
>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium
falciparum) [TaxId: 5833]}
Length = 286
Score = 36.8 bits (84), Expect = 9e-05
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 6 FKIINFHFPPSQEKIVTMSTIHPTRDLHSELVGNQHLPDDQARKVLQLKDLLDKILMLDT 65
+I P+ + ++ + P D + + DLL K+L LD
Sbjct: 211 MRIFRILGTPNSKNWPNVTEL-PKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDP 269
Query: 66 SKRLPINQALTHPFILE 82
++R+ QAL H + E
Sbjct: 270 NQRITAKQALEHAYFKE 286
>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit
{Rattus norvegicus [TaxId: 10116]}
Length = 328
Score = 36.4 bits (83), Expect = 1e-04
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPF 79
+ D LDK+L D RL +A+ HP+
Sbjct: 294 EALDFLDKLLRYDHQSRLTAREAMEHPY 321
>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 355
Score = 36.5 bits (83), Expect = 1e-04
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFI 80
Q +DLL K+L++D +KR+ ++ AL HP+I
Sbjct: 286 QARDLLSKMLVIDPAKRISVDDALQHPYI 314
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein
kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 322
Score = 36.2 bits (83), Expect = 1e-04
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFI 80
+ +D ++K L+ + ++R + Q + H FI
Sbjct: 273 EFQDFVNKCLIKNPAERADLKQLMVHAFI 301
>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 305
Score = 36.4 bits (83), Expect = 1e-04
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 6 FKIINFHFPPSQEKIVTMSTIHPTRDLHSELVGNQHLPDDQARKVLQLKDLLDKILMLDT 65
KI++ P +E + + D KDLL K L +
Sbjct: 225 GKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDE---LGKDLLLKCLTFNP 281
Query: 66 SKRLPINQALTHPFI 80
+KR+ AL+HP+
Sbjct: 282 AKRISAYSALSHPYF 296
>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens)
[TaxId: 9606]}
Length = 346
Score = 36.0 bits (82), Expect = 1e-04
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 4 ISFKIINFHFPPSQEKIVTMSTIHPTRDLHSEL-VGNQHLPDDQARKVLQLKDLLDKILM 62
+I+ P E + + + + + + +LL+K+L+
Sbjct: 227 QLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLV 286
Query: 63 LDTSKRLPINQALTHPFI 80
LD +R+ +AL HP+
Sbjct: 287 LDAEQRVTAGEALAHPYF 304
>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 298
Score = 36.0 bits (82), Expect = 2e-04
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 6 FKIINFHFPPSQEKIVTMSTIHPTRDLHSELVGNQHLPDDQARKVLQLKDLLDKILMLDT 65
F+I P + ++++ P Q + LL ++L D
Sbjct: 213 FRIFRTLGTPDEVVWPGVTSM-PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDP 271
Query: 66 SKRLPINQALTHPFI 80
+KR+ AL HPF
Sbjct: 272 NKRISAKAALAHPFF 286
>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 350
Score = 35.9 bits (82), Expect = 2e-04
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 6 FKIINFHFPPSQEKIVTMSTIHPTRDLHSELVGNQHLPDDQARKVLQLKDLLDKILMLDT 65
+II P++E+I M+ + ++ + + R + L ++L
Sbjct: 233 VEIIKVLGTPTREQIREMNPNYTEFKF-PQIKAHPWTKVFRPRTPPEAIALCSRLLEYTP 291
Query: 66 SKRLPINQALTHPFI 80
+ RL +A H F
Sbjct: 292 TARLTPLEACAHSFF 306
>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human
(Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 35.1 bits (80), Expect = 3e-04
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 27 HPTRDLHSELVGNQHLPDDQARKV-LQLKDLLDKILMLDTSKRLPINQALTHPFI 80
L + N D+ KD + ++L+ D KR+ I +L HP+I
Sbjct: 220 TKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 274
>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase
kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId:
9986]}
Length = 277
Score = 35.0 bits (80), Expect = 4e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFI 80
+KDL+ + L++ KR +AL HPF
Sbjct: 245 TVKDLVSRFLVVQPQKRYTAEEALAHPFF 273
>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain
{Caenorhabditis elegans, pjk4 [TaxId: 6239]}
Length = 350
Score = 34.7 bits (79), Expect = 4e-04
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFI 80
KD + K+L+ D + R+ I+QAL HP++
Sbjct: 255 DGKDFIRKLLLADPNTRMTIHQALEHPWL 283
>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare
(Aplysia californica), twk43 [TaxId: 6500]}
Length = 352
Score = 34.6 bits (79), Expect = 4e-04
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFI 80
+ KD + +L + KRL ++ AL HP++
Sbjct: 258 EAKDFIKNLLQKEPRKRLTVHDALEHPWL 286
>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2,
mapkap2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 335
Score = 34.7 bits (79), Expect = 5e-04
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFILE 82
++K L+ +L + ++R+ I + + HP+I++
Sbjct: 247 EVKMLIRNLLKTEPTQRMTITEFMNHPWIMQ 277
>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein
kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 34.6 bits (79), Expect = 6e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFI 80
KD L K L + R +Q L HPF+
Sbjct: 244 NFKDFLKKCLEKNVDARWTTSQLLQHPFV 272
>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 269
Score = 34.2 bits (78), Expect = 6e-04
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFI 80
+L +++ ++L L R + + L +P I
Sbjct: 241 ELNEIITRMLNLKDYHRPSVEEILENPLI 269
>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 307
Score = 34.2 bits (78), Expect = 6e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFI 80
KD + ++ D KR QAL HP+I
Sbjct: 239 SAKDFIRHLMEKDPEKRFTCEQALQHPWI 267
>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 34.2 bits (78), Expect = 7e-04
Identities = 9/56 (16%), Positives = 20/56 (35%)
Query: 27 HPTRDLHSELVGNQHLPDDQARKVLQLKDLLDKILMLDTSKRLPINQALTHPFILE 82
+ +S+ + + + LL KIL+ + S R+ I + +
Sbjct: 210 SDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNK 265
>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 34.2 bits (78), Expect = 7e-04
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFI 80
+D L++ L +D KR + L H F+
Sbjct: 245 IFRDFLNRCLDMDVEKRGSAKELLQHQFL 273
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 263
Score = 33.8 bits (77), Expect = 0.001
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFI 80
+DL+ ++L + S+R + + L HP+I
Sbjct: 230 GARDLISRLLKHNPSQRPMLREVLEHPWI 258
>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 270
Score = 33.4 bits (76), Expect = 0.001
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFI 80
++K++++ + + +R I L H F
Sbjct: 241 EVKEIIEGCIRQNKDERYSIKDLLNHAFF 269
>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein
kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 273
Score = 32.8 bits (74), Expect = 0.002
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFI 80
+ + L+ L L S R + HP++
Sbjct: 230 ECQHLIRWCLALRPSDRPTFEEIQNHPWM 258
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 309
Score = 32.7 bits (74), Expect = 0.002
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFILEK 83
++ +D L R L H F+L +
Sbjct: 242 YFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRE 273
>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein
kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 31.9 bits (72), Expect = 0.004
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFILE 82
+ +DL++K+L+LD +KRL + + +
Sbjct: 236 KARDLVEKLLVLDATKRLGCEEMEGYGPLKA 266
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 316
Score = 29.7 bits (66), Expect = 0.025
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 52 QLKDLLDKILMLDTSKRLP-----INQALTHPFI 80
+KDLL +++ D S+RL HP+
Sbjct: 227 DVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWF 260
>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo
sapiens) [TaxId: 9606]}
Length = 320
Score = 28.9 bits (64), Expect = 0.053
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 52 QLKDLLDKILMLDTSKRLPINQA-LTHPFI 80
+ KDLL K+ + + KRL + HP
Sbjct: 229 EAKDLLVKLFVREPEKRLGVRGDIRQHPLF 258
>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 337
Score = 28.2 bits (62), Expect = 0.099
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 52 QLKDLLDKILMLDTSKRLP-----INQALTHPFILE 82
+ K LL +L D +RL + + H F L
Sbjct: 231 EAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLS 266
>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2
{Cow (Bos taurus) [TaxId: 9913]}
Length = 364
Score = 27.4 bits (60), Expect = 0.19
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 52 QLKDLLDKILMLDTSKRL-----PINQALTHPFI 80
+L+ LL+ +L D ++RL + PF
Sbjct: 235 ELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFF 268
>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 322
Score = 27.1 bits (59), Expect = 0.19
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 52 QLKDLLDKILMLDTSKRLP-----INQALTHPFI 80
KDL+ ++LM D KRL ++ H F
Sbjct: 262 LAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFF 295
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter
pylori [TaxId: 210]}
Length = 133
Score = 24.0 bits (52), Expect = 2.4
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 13 FPPSQEKIVTMSTIHPTRDLH--SELVGNQHLPDDQARKVLQ 52
F P +EK V + I R + + LV ++ ++ + L
Sbjct: 71 FEPGEEKSVELIDIGGNRRIFGFNALV-DRQADNESKKIALH 111
>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic
domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 277
Score = 23.5 bits (50), Expect = 3.9
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFI 80
L ++ K L + R + +
Sbjct: 244 DLDAVVLKALAKNPENRYQTAAEMRADLV 272
>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo
sapiens) [TaxId: 9606]}
Length = 263
Score = 23.1 bits (49), Expect = 5.3
Identities = 5/50 (10%), Positives = 13/50 (26%), Gaps = 3/50 (6%)
Query: 35 ELVGNQHLPDDQARKVLQLKDLLDKILMLDTSKRLPINQALTHPFILEKI 84
E + + +++ R ++ L L +I
Sbjct: 213 EDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ---LAEI 259
>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 22.9 bits (48), Expect = 6.1
Identities = 4/36 (11%), Positives = 10/36 (27%), Gaps = 3/36 (8%)
Query: 52 QLKDLLDKILMLDTSKRLP---INQALTHPFILEKI 84
+ L+ L + + Q + F +
Sbjct: 247 EFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF 282
>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 22.9 bits (48), Expect = 6.9
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 35 ELVGNQHLPDDQARKVLQLKDLLDKILMLDTSKRLPINQALTHPFILEKI 84
+L+ H D + +L ++ S+R Q + L++I
Sbjct: 248 KLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVED---LDRI 294
>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor
receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 22.9 bits (48), Expect = 7.5
Identities = 4/33 (12%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFILEKI 84
++ + + S+R ++ + H L +
Sbjct: 265 EMYQTMLDCWHGEPSQRPTFSELVEH---LGNL 294
>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 22.8 bits (48), Expect = 8.6
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 52 QLKDLLDKILMLDTSKRLPINQALTHPFILEKI 84
L L+ K D S+R + L I
Sbjct: 237 TLYSLMTKCWAYDPSRRPRFTELKAQ---LSTI 266
>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 325
Score = 22.4 bits (47), Expect = 9.8
Identities = 7/50 (14%), Positives = 15/50 (30%)
Query: 28 PTRDLHSELVGNQHLPDDQARKVLQLKDLLDKILMLDTSKRLPINQALTH 77
P +L+ N D ++ ++ D+ KR +
Sbjct: 271 PVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSF 320
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.395
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 307,458
Number of extensions: 11493
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 56
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.5 bits)