BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17432
(83 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QKI|A Chain A, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|B Chain B, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|C Chain C, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|D Chain D, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|E Chain E, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|F Chain F, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|G Chain G, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|H Chain H, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
Length = 514
Score = 145 bits (367), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 75/83 (90%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
MVQNLM +RF NRIF P WNR+NIA V++TFKEPFGT+GRGGYFDEFGIIRDVMQNHLLQ
Sbjct: 206 MVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQ 265
Query: 61 ILSLVAMEKPATIHPDDIRNEKI 83
+L LVAMEKPA+ + DD+R+EK+
Sbjct: 266 MLCLVAMEKPASTNSDDVRDEKV 288
>pdb|2BH9|A Chain A, X-Ray Structure Of A Deletion Variant Of Human Glucose 6-
Phosphate Dehydrogenase Complexed With Structural And
Coenzyme Nadp
pdb|2BHL|A Chain A, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
pdb|2BHL|B Chain B, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
Length = 489
Score = 145 bits (366), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 75/83 (90%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
MVQNLM +RF NRIF P WNR+NIA V++TFKEPFGT+GRGGYFDEFGIIRDVMQNHLLQ
Sbjct: 181 MVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQ 240
Query: 61 ILSLVAMEKPATIHPDDIRNEKI 83
+L LVAMEKPA+ + DD+R+EK+
Sbjct: 241 MLCLVAMEKPASTNSDDVRDEKV 263
>pdb|4E9I|A Chain A, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|B Chain B, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|C Chain C, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|D Chain D, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4EM5|A Chain A, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|B Chain B, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|C Chain C, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|D Chain D, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
Length = 541
Score = 119 bits (297), Expect = 5e-28, Method: Composition-based stats.
Identities = 52/83 (62%), Positives = 64/83 (77%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
MVQN++ RF NR+F+ WN +IA V ITFKE GT GRGGYFD GIIRDV+QNHL Q
Sbjct: 239 MVQNIIVTRFANRVFSALWNSNSIACVQITFKEKIGTAGRGGYFDSIGIIRDVIQNHLTQ 298
Query: 61 ILSLVAMEKPATIHPDDIRNEKI 83
ILSL+ MEKP ++ +DIR+EK+
Sbjct: 299 ILSLLTMEKPRSLSAEDIRDEKV 321
>pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With
Substrate
pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
pdb|1H9B|A Chain A, Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 85.9 bits (211), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
MVQN+ +RFGN IF WN++ I +V +T E G + R GY+D G + D++QNH +Q
Sbjct: 184 MVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQ 243
Query: 61 ILSLVAMEKPATIHPDDIRNEK 82
I+ +AMEKP + DIR K
Sbjct: 244 IVGWLAMEKPESFTDKDIRAAK 265
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
pdb|1DPG|B Chain B, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
Length = 485
Score = 85.9 bits (211), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
MVQN+ +RFGN IF WN++ I +V +T E G + R GY+D G + D++QNH +Q
Sbjct: 184 MVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQ 243
Query: 61 ILSLVAMEKPATIHPDDIRNEK 82
I+ +AMEKP + DIR K
Sbjct: 244 IVGWLAMEKPESFTDKDIRAAK 265
>pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
Length = 485
Score = 85.9 bits (211), Expect = 6e-18, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
MVQN+ +RFGN IF WN++ I +V +T E G + R GY+D G + D++QNH +Q
Sbjct: 184 MVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQ 243
Query: 61 ILSLVAMEKPATIHPDDIRNEK 82
I+ +AMEKP + DIR K
Sbjct: 244 IVGWLAMEKPESFTDKDIRAAK 265
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1H94|A Chain A, Complex Of Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From L.Mesenteroides With Coenzyme Nad
Length = 485
Score = 84.7 bits (208), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
MVQN+ +RFGN IF WN++ I +V +T E G + R GY+D G + D++QNH +Q
Sbjct: 184 MVQNIAALRFGNPIFDAAWNKDYIKNVQVTLCEVLGVEERAGYYDTAGALLDMIQNHTMQ 243
Query: 61 ILSLVAMEKPATIHPDDIRNEK 82
I+ +AMEKP + DIR K
Sbjct: 244 IVGWLAMEKPESFTDKDIRAAK 265
>pdb|2DPG|A Chain A, Complex Of Inactive Mutant (H240->n) Of Glucose
6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides
With Nadp+
Length = 485
Score = 82.8 bits (203), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 52/82 (63%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
MVQN+ +RFGN IF WN++ I +V +T E G + R GY+D G + D++QN+ +Q
Sbjct: 184 MVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNNTMQ 243
Query: 61 ILSLVAMEKPATIHPDDIRNEK 82
I+ +AMEKP + DIR K
Sbjct: 244 IVGWLAMEKPESFTDKDIRAAK 265
>pdb|2AHV|A Chain A, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHV|B Chain B, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHV|C Chain C, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHV|D Chain D, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHW|A Chain A, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
pdb|2AHW|B Chain B, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
pdb|2AHW|C Chain C, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
pdb|2AHW|D Chain D, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
Length = 531
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 43 YFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIR 79
Y D I + V N + ++ + M K AT+HP +R
Sbjct: 205 YLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSVR 241
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
pdb|3GUE|B Chain B, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
Length = 484
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 54 MQNHLLQILSLVAMEKPATIHPDDIRNEKI 83
M + L +L L M P T++P D ++ K+
Sbjct: 316 MMDEQLGVLRLPVMRNPKTVNPQDSQSTKV 345
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 14 IFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATI 73
++ W + ++ + T KE T + E +++++ +L+Q+L + +E P I
Sbjct: 48 VYVGVWKKYSLTVAVKTLKE--DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTLEPPFYI 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,510,486
Number of Sequences: 62578
Number of extensions: 89354
Number of successful extensions: 191
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 11
length of query: 83
length of database: 14,973,337
effective HSP length: 51
effective length of query: 32
effective length of database: 11,781,859
effective search space: 377019488
effective search space used: 377019488
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)