Query psy17432
Match_columns 83
No_of_seqs 117 out of 774
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 22:19:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05722 glucose-6-phosphate 1 100.0 1.2E-47 2.7E-52 309.0 5.5 83 1-83 191-273 (495)
2 COG0364 Zwf Glucose-6-phosphat 100.0 1.3E-47 2.9E-52 309.0 5.6 83 1-83 181-263 (483)
3 PLN02539 glucose-6-phosphate 1 100.0 1.3E-47 2.8E-52 309.1 5.4 83 1-83 201-283 (491)
4 PTZ00309 glucose-6-phosphate 1 100.0 1.5E-47 3.2E-52 311.8 5.5 83 1-83 237-319 (542)
5 PRK12854 glucose-6-phosphate 1 100.0 1.8E-47 3.9E-52 308.0 5.4 83 1-83 189-271 (484)
6 TIGR00871 zwf glucose-6-phosph 100.0 2E-47 4.4E-52 307.0 5.5 83 1-83 182-264 (482)
7 PLN02333 glucose-6-phosphate 1 100.0 2.6E-47 5.6E-52 313.4 5.4 83 1-83 297-379 (604)
8 PRK12853 glucose-6-phosphate 1 100.0 4.1E-47 9E-52 305.5 5.6 83 1-83 181-263 (482)
9 PLN02640 glucose-6-phosphate 1 100.0 6.5E-47 1.4E-51 309.7 5.6 83 1-83 268-350 (573)
10 PF02781 G6PD_C: Glucose-6-pho 100.0 9.1E-47 2E-51 288.2 2.8 78 6-83 1-78 (293)
11 KOG0563|consensus 100.0 5E-44 1.1E-48 288.1 5.5 83 1-83 198-280 (499)
12 PF10375 GRAB: GRIP-related Ar 56.1 6.7 0.00014 19.3 0.9 14 49-62 6-19 (19)
13 COG4785 NlpI Lipoprotein NlpI, 52.1 7.9 0.00017 30.5 1.2 25 39-64 70-94 (297)
14 PF14165 YtzH: YtzH-like prote 42.8 11 0.00023 25.1 0.6 14 45-58 5-18 (87)
15 KOG0946|consensus 37.2 20 0.00043 32.5 1.5 19 51-69 309-327 (970)
16 TIGR02257 cobalto_cobN cobalto 36.5 55 0.0012 30.1 4.2 44 15-58 810-855 (1122)
17 PF03458 UPF0126: UPF0126 doma 34.5 15 0.00032 23.1 0.2 10 48-57 42-51 (80)
18 KOG3437|consensus 33.5 43 0.00092 25.0 2.5 36 22-58 148-183 (184)
19 PF09045 L27_2: L27_2; InterP 33.4 34 0.00074 21.2 1.7 20 45-64 26-46 (58)
20 PRK12321 cobN cobaltochelatase 33.0 56 0.0012 30.0 3.6 44 15-58 796-841 (1100)
21 KOG3559|consensus 32.8 31 0.00067 29.3 1.9 29 32-63 61-89 (598)
22 TIGR03833 conserved hypothetic 30.6 43 0.00092 21.0 1.8 27 25-56 12-38 (62)
23 PF05542 DUF760: Protein of un 29.6 40 0.00086 21.4 1.6 20 47-66 23-42 (86)
24 PLN03069 magnesiumprotoporphyr 28.0 89 0.0019 29.0 4.1 44 15-58 999-1043(1220)
25 PLN03241 magnesium chelatase s 27.9 93 0.002 29.3 4.2 45 15-59 1015-1060(1353)
26 COG5175 MOT2 Transcriptional r 27.2 17 0.00036 30.2 -0.5 41 17-57 99-154 (480)
27 PRK05989 cobN cobaltochelatase 27.1 77 0.0017 29.4 3.5 44 15-58 916-961 (1244)
28 PF09034 TRADD_N: TRADD, N-ter 26.9 34 0.00074 23.7 1.0 19 46-64 41-59 (111)
29 PF01786 AOX: Alternative oxid 25.5 10 0.00023 28.3 -1.9 27 17-43 1-27 (207)
30 PF04659 Arch_fla_DE: Archaeal 24.2 37 0.0008 22.6 0.8 26 41-66 41-66 (99)
31 PF06217 GAGA_bind: GAGA bindi 23.5 17 0.00038 28.8 -1.0 29 41-73 11-39 (301)
32 PF02514 CobN-Mg_chel: CobN/Ma 22.0 1E+02 0.0022 28.3 3.3 44 15-58 784-828 (1098)
33 KOG0099|consensus 21.9 20 0.00044 29.0 -1.0 23 9-31 252-274 (379)
34 KOG4128|consensus 21.7 75 0.0016 26.5 2.2 28 48-76 208-235 (457)
35 PRK12493 magnesium chelatase s 21.7 1.2E+02 0.0025 28.5 3.6 44 15-58 984-1028(1310)
36 TIGR02025 BchH magnesium chela 21.0 1.2E+02 0.0026 28.3 3.5 44 15-58 892-936 (1216)
37 KOG4278|consensus 20.4 83 0.0018 28.7 2.3 56 16-71 256-338 (1157)
38 PF10431 ClpB_D2-small: C-term 20.1 93 0.002 18.7 2.0 29 42-70 42-72 (81)
No 1
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=100.00 E-value=1.2e-47 Score=309.00 Aligned_cols=83 Identities=55% Similarity=0.996 Sum_probs=81.9
Q ss_pred ChhhhhhHhhhccccccccCCCCcceeEEEeeCCCCcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCchhHhh
Q psy17432 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRN 80 (83)
Q Consensus 1 ~vqnll~lRfaN~~~~~~Wn~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHLlQ~l~lvaMe~P~~~~~~dir~ 80 (83)
+|||||+|||+|++|+|+|||+||++||||++|++||||||+|||++|||||||||||+|+||++|||||.++++++||+
T Consensus 191 ~VqNil~lRFaN~~feplWNr~~I~~VqIt~~E~~GvegR~~yYd~~GalRDmvQNHLlQlLalvAME~P~~~~~~~ir~ 270 (495)
T PRK05722 191 TVQNLLALRFANALFEPLWNRNYIDHVQITVAETVGVEGRGGYYDKSGALRDMVQNHLLQLLALVAMEPPASLDADSIRD 270 (495)
T ss_pred HHHHHHHHHHhhHhhHhhhcccccceeEEEEecCCCcChhhhhhhccchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy17432 81 EKI 83 (83)
Q Consensus 81 ~K~ 83 (83)
||+
T Consensus 271 eK~ 273 (495)
T PRK05722 271 EKV 273 (495)
T ss_pred HHH
Confidence 995
No 2
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-47 Score=309.00 Aligned_cols=83 Identities=58% Similarity=1.014 Sum_probs=82.0
Q ss_pred ChhhhhhHhhhccccccccCCCCcceeEEEeeCCCCcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCchhHhh
Q psy17432 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRN 80 (83)
Q Consensus 1 ~vqnll~lRfaN~~~~~~Wn~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHLlQ~l~lvaMe~P~~~~~~dir~ 80 (83)
+||||++|||||.+|||+|||+||++||||++|++||||||+|||++|++||||||||||+|||+|||||+++++++||+
T Consensus 181 tVQNllalRFaN~~fE~lWNr~~Id~VqIt~aE~~GvEgRggYYD~~GalRDMvQNHlLQlL~LvAME~P~~~~ad~ird 260 (483)
T COG0364 181 TVQNLLALRFANAIFEPLWNRNYIDHVQITVAETLGVEGRGGYYDKAGALRDMVQNHLLQLLCLVAMEPPASFSADDIRD 260 (483)
T ss_pred HHHHHHHHHHhhhhhhhhhccccceeEEEEEeeeccccccccchhccchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy17432 81 EKI 83 (83)
Q Consensus 81 ~K~ 83 (83)
||+
T Consensus 261 EKv 263 (483)
T COG0364 261 EKV 263 (483)
T ss_pred HHH
Confidence 996
No 3
>PLN02539 glucose-6-phosphate 1-dehydrogenase
Probab=100.00 E-value=1.3e-47 Score=309.14 Aligned_cols=83 Identities=66% Similarity=1.231 Sum_probs=81.9
Q ss_pred ChhhhhhHhhhccccccccCCCCcceeEEEeeCCCCcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCchhHhh
Q psy17432 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRN 80 (83)
Q Consensus 1 ~vqnll~lRfaN~~~~~~Wn~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHLlQ~l~lvaMe~P~~~~~~dir~ 80 (83)
+|||||+|||+|.+|||+|||+||++||||++|++||||||+|||++|||||||||||+|+|||+|||||.++++++||+
T Consensus 201 ~VqNil~lRFaN~ifeplWNr~~I~~VqIt~~E~~GvegR~~yYD~~GalRDmvQNHLlQlLalvAMEpP~~~~~~~ir~ 280 (491)
T PLN02539 201 LVQNLLVLRFANRFFLPLWNRDNIANVQIVFREDFGTEGRGGYFDEYGIIRDIIQNHLLQVLCLVAMEKPVSLKPEHIRD 280 (491)
T ss_pred HHHHHHHHHHhhHHHHhhhcccccceEEEEEecCCCcChhhhhhhccchHHHHHHHHHHHHHHHHHhCCcCCCCHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy17432 81 EKI 83 (83)
Q Consensus 81 ~K~ 83 (83)
||+
T Consensus 281 eK~ 283 (491)
T PLN02539 281 EKV 283 (491)
T ss_pred HHH
Confidence 995
No 4
>PTZ00309 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-47 Score=311.76 Aligned_cols=83 Identities=70% Similarity=1.208 Sum_probs=81.9
Q ss_pred ChhhhhhHhhhccccccccCCCCcceeEEEeeCCCCcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCchhHhh
Q psy17432 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRN 80 (83)
Q Consensus 1 ~vqnll~lRfaN~~~~~~Wn~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHLlQ~l~lvaMe~P~~~~~~dir~ 80 (83)
||||||+|||+|++|||+|||+||++||||++|++||||||+|||++|||||||||||||+|||+|||||.++++++||+
T Consensus 237 ~VQNil~lRFaN~ifeplWNr~~I~~VqIt~~E~~GvegRg~yYD~~GalRDmvQNHLlQlLalvAMEpP~~~~a~~ird 316 (542)
T PTZ00309 237 MVQNLIVLRFANRVFEPLWNRNNIACVQITFKEDIGTEGRGGYFDSYGIIRDVMQNHLLQILALLAMEKPVSLSAEDIRD 316 (542)
T ss_pred HHHHHHHHHHhhHhhhhhhcccccceeEEEEecCCCcChhhhhhhccchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy17432 81 EKI 83 (83)
Q Consensus 81 ~K~ 83 (83)
||+
T Consensus 317 eKv 319 (542)
T PTZ00309 317 EKV 319 (542)
T ss_pred HHH
Confidence 995
No 5
>PRK12854 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-47 Score=307.97 Aligned_cols=83 Identities=42% Similarity=0.787 Sum_probs=81.9
Q ss_pred ChhhhhhHhhhccccccccCCCCcceeEEEeeCCCCcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCchhHhh
Q psy17432 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRN 80 (83)
Q Consensus 1 ~vqnll~lRfaN~~~~~~Wn~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHLlQ~l~lvaMe~P~~~~~~dir~ 80 (83)
+|||||+|||+|++|||+|||+||++||||++|++||||||+|||++|||||||||||||+||++|||||.++++++||+
T Consensus 189 ~VqNll~lRFaN~~feplWNr~~I~~VqIt~~E~~GvegR~~yYD~~GalRDmvQNHLlQlLalvAMEpP~~~~a~~ir~ 268 (484)
T PRK12854 189 AAQNILAFRFANGLFEPIWNREFIDHVQIDVPETLGVDTRAAFYDATGAYRDMVVTHLFQVLAFVAMEPPTALEPDAISE 268 (484)
T ss_pred HHHHHHHHHHhHHHHHhhhcccccceeEEEEecCCCcCchhhhhcccccHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy17432 81 EKI 83 (83)
Q Consensus 81 ~K~ 83 (83)
||+
T Consensus 269 eK~ 271 (484)
T PRK12854 269 EKN 271 (484)
T ss_pred HHH
Confidence 995
No 6
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=100.00 E-value=2e-47 Score=306.99 Aligned_cols=83 Identities=59% Similarity=1.050 Sum_probs=81.9
Q ss_pred ChhhhhhHhhhccccccccCCCCcceeEEEeeCCCCcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCchhHhh
Q psy17432 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRN 80 (83)
Q Consensus 1 ~vqnll~lRfaN~~~~~~Wn~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHLlQ~l~lvaMe~P~~~~~~dir~ 80 (83)
|||||++|||+|++|+|+|||+||++||||++|++||||||+|||++|||||||||||+|+||++|||||.++++++||+
T Consensus 182 ~VqNil~lRFaN~~fe~lWNr~~I~~VqIt~~E~~GvegR~~yyD~~GalRDmvQNHLlQlL~lvAMe~P~~~~a~~ir~ 261 (482)
T TIGR00871 182 TVQNLLVLRFANQIFEPLWNRRYIDHVQITFAESFGVEGRGGYYDKSGALRDMVQNHLLQLLCLVAMEPPASFDADSIRD 261 (482)
T ss_pred HHHHHHHHHHhhHhhhhhhcccccceeEEEEecCCCcChhhhhhhccchHHHHHHhHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy17432 81 EKI 83 (83)
Q Consensus 81 ~K~ 83 (83)
||+
T Consensus 262 eK~ 264 (482)
T TIGR00871 262 EKV 264 (482)
T ss_pred HHH
Confidence 995
No 7
>PLN02333 glucose-6-phosphate 1-dehydrogenase
Probab=100.00 E-value=2.6e-47 Score=313.45 Aligned_cols=83 Identities=60% Similarity=1.098 Sum_probs=81.9
Q ss_pred ChhhhhhHhhhccccccccCCCCcceeEEEeeCCCCcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCchhHhh
Q psy17432 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRN 80 (83)
Q Consensus 1 ~vqnll~lRfaN~~~~~~Wn~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHLlQ~l~lvaMe~P~~~~~~dir~ 80 (83)
|||||++|||+|.+|+|+|||+||++||||++|++|+||||+|||++|||||||||||+|+|||+|||||.+++++|||+
T Consensus 297 ~VQNll~lRFaN~ifeplWNr~~I~~VqIt~~E~~GvEgRggYYD~~GaiRDmvQNHLLQlLaLvAME~P~s~~aedIRd 376 (604)
T PLN02333 297 LVENLSVLRFSNLIFEPLWSRQYIRNVQFIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRN 376 (604)
T ss_pred HHHHHHHHHHhhHhhhhhhccccceeEEEEEecCCCcChhhhhhhccchHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy17432 81 EKI 83 (83)
Q Consensus 81 ~K~ 83 (83)
||+
T Consensus 377 EKv 379 (604)
T PLN02333 377 EKV 379 (604)
T ss_pred HHH
Confidence 995
No 8
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=100.00 E-value=4.1e-47 Score=305.48 Aligned_cols=83 Identities=52% Similarity=0.951 Sum_probs=81.9
Q ss_pred ChhhhhhHhhhccccccccCCCCcceeEEEeeCCCCcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCchhHhh
Q psy17432 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRN 80 (83)
Q Consensus 1 ~vqnll~lRfaN~~~~~~Wn~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHLlQ~l~lvaMe~P~~~~~~dir~ 80 (83)
||||||+|||+|++|+|+|||+||++||||++|++||||||+|||++|||||||||||||+||++|||||.+++++|||+
T Consensus 181 ~VqNil~lRFaN~~feplWNr~~I~~VqIt~~E~~GvegR~~yyD~~GalRDmvQNHLlQlLalvAME~P~~~~~~~ir~ 260 (482)
T PRK12853 181 TVQNLLALRFANALLEPLWNRNHIDHVQITVAETLGVEGRGGFYDATGALRDMVQNHLLQLLALVAMEPPASFDADAVRD 260 (482)
T ss_pred HHHHHHHHHHhhHhhhhhhcccccceeEEEEecCCCcChhhhhhcccchHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy17432 81 EKI 83 (83)
Q Consensus 81 ~K~ 83 (83)
||+
T Consensus 261 eK~ 263 (482)
T PRK12853 261 EKA 263 (482)
T ss_pred HHH
Confidence 995
No 9
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=100.00 E-value=6.5e-47 Score=309.69 Aligned_cols=83 Identities=59% Similarity=1.098 Sum_probs=81.9
Q ss_pred ChhhhhhHhhhccccccccCCCCcceeEEEeeCCCCcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCchhHhh
Q psy17432 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRN 80 (83)
Q Consensus 1 ~vqnll~lRfaN~~~~~~Wn~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHLlQ~l~lvaMe~P~~~~~~dir~ 80 (83)
+|||||+|||+|++|+|+|||+||++||||++|++||||||+|||++|||||||||||+|+|||+|||||.++++++||+
T Consensus 268 ~VQNil~lRFaN~ifeplWNr~~Id~VqIt~~E~~GVegR~~YYD~~GalRDMvQNHLlQlLaLvAMEpP~~~~a~~IRd 347 (573)
T PLN02640 268 LVENLSVLRFSNLVFEPLWSRNYIRNVQLIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRN 347 (573)
T ss_pred HHHHHHHHHHhhhhhhhhhcccccceEEEEEecCCCcChhhhhhhccchHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy17432 81 EKI 83 (83)
Q Consensus 81 ~K~ 83 (83)
||+
T Consensus 348 EKv 350 (573)
T PLN02640 348 EKV 350 (573)
T ss_pred HHH
Confidence 995
No 10
>PF02781 G6PD_C: Glucose-6-phosphate dehydrogenase, C-terminal domain; InterPro: IPR022675 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the C-terminal domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 1QKI_E 2BH9_A 2BHL_A 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A ....
Probab=100.00 E-value=9.1e-47 Score=288.23 Aligned_cols=78 Identities=58% Similarity=1.050 Sum_probs=70.8
Q ss_pred hhHhhhccccccccCCCCcceeEEEeeCCCCcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCchhHhhccC
Q psy17432 6 MTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRNEKI 83 (83)
Q Consensus 6 l~lRfaN~~~~~~Wn~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHLlQ~l~lvaMe~P~~~~~~dir~~K~ 83 (83)
|+|||+|++|+|+|||+||++||||++|++||||||+|||++|||||||||||||+|||+|||||.+++++|||+||+
T Consensus 1 l~~RFaN~~fe~lWN~~~I~~VqIt~~E~~Gve~R~~yYD~~GaiRDmvQNHllQlL~lvaMe~P~~~~~~~ir~eK~ 78 (293)
T PF02781_consen 1 LALRFANPIFEPLWNRNYIDSVQITLAETLGVEGRGGYYDQSGAIRDMVQNHLLQLLALVAMEPPASLDAEDIRDEKV 78 (293)
T ss_dssp HHHHHS-HHHHTTSSTTTEEEEEEEEEESS-STSTHHHHHHHHHHHHTTTTHHHHHHHHHH----SSSSHHHHHHHHH
T ss_pred CcEeechHhhHhhhCccceeEEEEEEEcCcccccccccccccchHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999995
No 11
>KOG0563|consensus
Probab=100.00 E-value=5e-44 Score=288.15 Aligned_cols=83 Identities=70% Similarity=1.217 Sum_probs=82.0
Q ss_pred ChhhhhhHhhhccccccccCCCCcceeEEEeeCCCCcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCchhHhh
Q psy17432 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRN 80 (83)
Q Consensus 1 ~vqnll~lRfaN~~~~~~Wn~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHLlQ~l~lvaMe~P~~~~~~dir~ 80 (83)
||||+++|||+|++|+|+|||+||+||||+++|++|+||||||||++|||||||||||+|+|||+|||+|.|++|||||+
T Consensus 198 mV~nl~~lRf~N~i~~~lWNR~~I~sV~I~fkE~fGtEGRggYfD~~GIIRDvvQNHLlQiL~LvAME~P~s~~aedir~ 277 (499)
T KOG0563|consen 198 LVQNLLVLRFANRIFEPLWNRDYIESVQIVFKEDFGTEGRGGYFDEYGIIRDVVQNHLLQILTLVAMEKPKSLDAEDIRD 277 (499)
T ss_pred HHhhhhhheecchhhcccccccceeEEEEEEeccCCccCccccccccccHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy17432 81 EKI 83 (83)
Q Consensus 81 ~K~ 83 (83)
|||
T Consensus 278 eKV 280 (499)
T KOG0563|consen 278 EKV 280 (499)
T ss_pred HHH
Confidence 996
No 12
>PF10375 GRAB: GRIP-related Arf-binding domain ; InterPro: IPR019459 The GRIP-related Arf-binding (GRAB) domain is located towards the C terminus of Rud3 type proteins. It is related to the GRIP domain, but the conserved tyrosine residue found at position 4 in all GRIP domains is replaced by a leucine residue. The small GTPase Arf is localised to the cis-Golgi where it recruits proteins via their GRAB domain, as part of the transport of cargo from the endoplasmic reticulum to the plasma membrane [].
Probab=56.10 E-value=6.7 Score=19.32 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHH
Q psy17432 49 IIRDVMQNHLLQIL 62 (83)
Q Consensus 49 ~iRDmvQNHLlQ~l 62 (83)
+=|.+|.||++|.|
T Consensus 6 VDk~lisN~~l~Fl 19 (19)
T PF10375_consen 6 VDKRLISNLLLSFL 19 (19)
T ss_pred HHHHHHHHHHHhcC
Confidence 44789999998853
No 13
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=52.14 E-value=7.9 Score=30.52 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=22.2
Q ss_pred cccccccccchHHHHHHHHHHHHHHH
Q psy17432 39 GRGGYFDEFGIIRDVMQNHLLQILSL 64 (83)
Q Consensus 39 gR~~yyd~~G~iRDmvQNHLlQ~l~l 64 (83)
.||-+||+.| +|+.--|-..|.|++
T Consensus 70 ERGvlYDSlG-L~~LAR~DftQaLai 94 (297)
T COG4785 70 ERGVLYDSLG-LRALARNDFSQALAI 94 (297)
T ss_pred Hhcchhhhhh-HHHHHhhhhhhhhhc
Confidence 6999999999 689999999998875
No 14
>PF14165 YtzH: YtzH-like protein
Probab=42.83 E-value=11 Score=25.08 Aligned_cols=14 Identities=21% Similarity=0.721 Sum_probs=12.1
Q ss_pred cccchHHHHHHHHH
Q psy17432 45 DEFGIIRDVMQNHL 58 (83)
Q Consensus 45 d~~G~iRDmvQNHL 58 (83)
++-|.++|+++||-
T Consensus 5 hQl~LLkDIL~~hq 18 (87)
T PF14165_consen 5 HQLTLLKDILSNHQ 18 (87)
T ss_pred HHHHHHHHHHHhhh
Confidence 56799999999993
No 15
>KOG0946|consensus
Probab=37.22 E-value=20 Score=32.47 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhhCC
Q psy17432 51 RDVMQNHLLQILSLVAMEK 69 (83)
Q Consensus 51 RDmvQNHLlQ~l~lvaMe~ 69 (83)
|=|.|+|++++|+.++|.+
T Consensus 309 k~l~ss~ll~~Lc~il~~~ 327 (970)
T KOG0946|consen 309 KALVSSHLLDVLCTILMHP 327 (970)
T ss_pred HHHHHcchHHHHHHHHcCC
Confidence 6799999999999999988
No 16
>TIGR02257 cobalto_cobN cobaltochelatase, CobN subunit.
Probab=36.46 E-value=55 Score=30.11 Aligned_cols=44 Identities=16% Similarity=0.327 Sum_probs=32.3
Q ss_pred cccccCC--CCcceeEEEeeCCCCcccccccccccchHHHHHHHHH
Q psy17432 15 FTPTWNR--ENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHL 58 (83)
Q Consensus 15 ~~~~Wn~--~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHL 58 (83)
.+|+|+. ..|..++|.=.|++|=..===----+|+.||+..|-+
T Consensus 810 VrPvWd~~~grV~g~eiIPl~eLgRPRIDVtvriSG~fRD~Fp~~i 855 (1122)
T TIGR02257 810 VRPVWDGASRRVIDLEVIPLSLLGRPRVDVTLRISGLFRDAFPNLI 855 (1122)
T ss_pred CCccccCCCCcccceEEeCHHHcCCCCeeEEEEechhHHHHHHHHH
Confidence 6899974 7999999998888863211112336899999998865
No 17
>PF03458 UPF0126: UPF0126 domain; InterPro: IPR005115 This domain is duplicated in bacterial membrane proteins of unknown function and each domain contains three transmembrane helices. The conserved glycines are suggestive of an ion channel.
Probab=34.46 E-value=15 Score=23.13 Aligned_cols=10 Identities=50% Similarity=0.946 Sum_probs=8.7
Q ss_pred chHHHHHHHH
Q psy17432 48 GIIRDVMQNH 57 (83)
Q Consensus 48 G~iRDmvQNH 57 (83)
|++||++-|+
T Consensus 42 G~lRDvll~~ 51 (80)
T PF03458_consen 42 GILRDVLLGR 51 (80)
T ss_pred HHHHHHHcCC
Confidence 8999998776
No 18
>KOG3437|consensus
Probab=33.50 E-value=43 Score=25.02 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=29.9
Q ss_pred CCcceeEEEeeCCCCcccccccccccchHHHHHHHHH
Q psy17432 22 ENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHL 58 (83)
Q Consensus 22 ~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHL 58 (83)
.|+.++.|...+..|-..--+-|- ++-|.+++|||+
T Consensus 148 thvR~iri~~p~~e~~~~~~e~~p-~~~i~~~~~~~i 183 (184)
T KOG3437|consen 148 THVRHIRIYAPSIEGPYYKIEWFP-LTTIDFVFQNAI 183 (184)
T ss_pred ceeEEEEEecccccCccceehccc-CCcHHHHHHhhh
Confidence 578999999998777766666666 899999999997
No 19
>PF09045 L27_2: L27_2; InterPro: IPR015132 The L27_2 domain is a protein-protein interaction domain capable of organising scaffold proteins into supramolecular assemblies by formation of heteromeric L27_2 domain complexes. L27_2 domain-mediated protein assemblies have been shown to play essential roles in cellular processes including asymmetric cell division, establishment and maintenance of cell polarity, and clustering of receptors and ion channels. Members of this family form specific heterotetrameric complexes, in which each domain contains three alpha-helices. The two N-terminal helices of each L27_2 domain pack together to form a tight, four-helix bundle in the heterodimer, whilst the third helix of each L27_2 domain forms another four-helix bundle that assembles the two units of the heterodimer into a tetramer []. ; PDB: 3UIT_A 1VF6_B.
Probab=33.43 E-value=34 Score=21.15 Aligned_cols=20 Identities=35% Similarity=0.780 Sum_probs=14.2
Q ss_pred cccchHHHHHHHHHH-HHHHH
Q psy17432 45 DEFGIIRDVMQNHLL-QILSL 64 (83)
Q Consensus 45 d~~G~iRDmvQNHLl-Q~l~l 64 (83)
++-+.+||++|+=|+ |+|++
T Consensus 26 e~L~~l~~~LqSPLF~~iL~L 46 (58)
T PF09045_consen 26 EKLSLLKDTLQSPLFNQILTL 46 (58)
T ss_dssp HHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHH
Confidence 466899999998765 56654
No 20
>PRK12321 cobN cobaltochelatase subunit CobN; Reviewed
Probab=32.98 E-value=56 Score=30.02 Aligned_cols=44 Identities=14% Similarity=0.285 Sum_probs=32.9
Q ss_pred cccccC--CCCcceeEEEeeCCCCcccccccccccchHHHHHHHHH
Q psy17432 15 FTPTWN--RENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHL 58 (83)
Q Consensus 15 ~~~~Wn--~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHL 58 (83)
.+|+|+ +..|..|+|.=.|++|=..===-.--+|+.||+..|-+
T Consensus 796 VrPvwd~~~grV~g~eiIPl~eLgRPRIDVtvriSG~FRD~Fp~~i 841 (1100)
T PRK12321 796 VRPVWDHASGRVTGIEVLPLALLDRPRIDVTLRVSGLFRDVFPALI 841 (1100)
T ss_pred CcccccCCCCcccceEEeCHHHcCCCCeeEEEEecchHHhhHHHHH
Confidence 689997 57999999998888863311112336899999999975
No 21
>KOG3559|consensus
Probab=32.84 E-value=31 Score=29.34 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=22.1
Q ss_pred eCCCCcccccccccccchHHHHHHHHHHHHHH
Q psy17432 32 KEPFGTQGRGGYFDEFGIIRDVMQNHLLQILS 63 (83)
Q Consensus 32 ~E~~gvegR~~yyd~~G~iRDmvQNHLlQ~l~ 63 (83)
-|..|-..|++|||.++ --+-||+||+|-
T Consensus 61 Geawg~~S~a~~~~g~~---~elgshlLqtLD 89 (598)
T KOG3559|consen 61 GEAWGASSRADPLDGVD---KELGSHLLQTLD 89 (598)
T ss_pred chhccCCCccccccchH---HHHHHhHHHhhc
Confidence 45666778999988764 467899999873
No 22
>TIGR03833 conserved hypothetical protein. A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895. The function is unknown.
Probab=30.56 E-value=43 Score=21.01 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=20.9
Q ss_pred ceeEEEeeCCCCcccccccccccchHHHHHHH
Q psy17432 25 ASVMITFKEPFGTQGRGGYFDEFGIIRDVMQN 56 (83)
Q Consensus 25 ~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQN 56 (83)
..|.|.+|++-..... ..|+++|++.|
T Consensus 12 ~~V~IvlK~DQ~tG~l-----t~G~V~diLT~ 38 (62)
T TIGR03833 12 LSVDIVLKQDQRTGKL-----TRGIVKDILTN 38 (62)
T ss_pred CEEEEEEeccCCCCce-----eeEEhhhhhcC
Confidence 4789999998774433 67999999876
No 23
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=29.64 E-value=40 Score=21.44 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=16.4
Q ss_pred cchHHHHHHHHHHHHHHHHh
Q psy17432 47 FGIIRDVMQNHLLQILSLVA 66 (83)
Q Consensus 47 ~G~iRDmvQNHLlQ~l~lva 66 (83)
.-=+.|+|++|+..+|+...
T Consensus 23 s~ev~e~m~~~v~~llG~l~ 42 (86)
T PF05542_consen 23 SPEVLEAMKQHVSGLLGNLS 42 (86)
T ss_pred CHHHHHHHHHHHHHHHcCCC
Confidence 33478999999999998775
No 24
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=28.02 E-value=89 Score=29.03 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=32.6
Q ss_pred cccccC-CCCcceeEEEeeCCCCcccccccccccchHHHHHHHHH
Q psy17432 15 FTPTWN-RENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHL 58 (83)
Q Consensus 15 ~~~~Wn-~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHL 58 (83)
.+|+|+ ...|..++|+=-|++|=..===-.--+|+.||++.|-+
T Consensus 999 vrPvwD~~GrV~g~elIPLeELGRPRIDVvv~iSGiFRD~fp~~i 1043 (1220)
T PLN03069 999 VRPVADALGRVNKVEPVSLEELGRPRIDVVVNCSGVFRDLFINQM 1043 (1220)
T ss_pred CeeeeCCCCCcCceEEeCHHHcCCCCeeEEEEecchHHHhHHHHH
Confidence 578994 67899999999999863311113446899999999954
No 25
>PLN03241 magnesium chelatase subunit H; Provisional
Probab=27.95 E-value=93 Score=29.32 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=33.1
Q ss_pred cccccC-CCCcceeEEEeeCCCCcccccccccccchHHHHHHHHHH
Q psy17432 15 FTPTWN-RENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLL 59 (83)
Q Consensus 15 ~~~~Wn-~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHLl 59 (83)
.+|+|+ ...|..++|.=-|++|=..===-.--+|+.||++.|-+-
T Consensus 1015 vrPvwd~~GRV~g~ElIPLeELGRPRIDVvv~iSGiFRD~Fp~~i~ 1060 (1353)
T PLN03241 1015 ARPVKEGTGRVVRYELIPLSELGRPRVDVLCNMSGIFRDSFANVVD 1060 (1353)
T ss_pred CccccCCCCcccceEEecHHHcCCCCeeEEEEecchhHhhHHHHHH
Confidence 578996 578999999999998632111134468999999988653
No 26
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=27.20 E-value=17 Score=30.19 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=30.0
Q ss_pred cccCCCCcceeEEEee---------------CCCCcccccccccccchHHHHHHHH
Q psy17432 17 PTWNRENIASVMITFK---------------EPFGTQGRGGYFDEFGIIRDVMQNH 57 (83)
Q Consensus 17 ~~Wn~~~I~~VqI~~~---------------E~~gvegR~~yyd~~G~iRDmvQNH 57 (83)
..=||+|..++.+.-| |...+-.|-.||.+||.|.-++-|-
T Consensus 99 e~~nrkhlsniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNk 154 (480)
T COG5175 99 EGQNRKHLSNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNK 154 (480)
T ss_pred hcccccccccceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecc
Confidence 3456777777665432 4566777999999999999888775
No 27
>PRK05989 cobN cobaltochelatase subunit CobN; Reviewed
Probab=27.10 E-value=77 Score=29.43 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=32.8
Q ss_pred cccccC--CCCcceeEEEeeCCCCcccccccccccchHHHHHHHHH
Q psy17432 15 FTPTWN--RENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHL 58 (83)
Q Consensus 15 ~~~~Wn--~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHL 58 (83)
.+|+|+ +..|..|+|.=.|++|=..-==-.--+|+.||+..|-+
T Consensus 916 VrPvWd~~~grV~g~evIPl~eLgRPRIDVtvriSG~fRD~fp~~i 961 (1244)
T PRK05989 916 VRPVWDEASRRVTGLEIIPLAELGRPRIDVTLRISGFFRDAFPNVI 961 (1244)
T ss_pred CCccccCCCCCccceEEeCHHHcCCCCeeEEEEecchhHhhHHHHH
Confidence 689996 67999999998888863311113346899999999864
No 28
>PF09034 TRADD_N: TRADD, N-terminal domain; InterPro: IPR009095 TRADD is a signalling adaptor protein involved in tumour necrosis factor-receptor I (TNFR1)-associated apoptosis and cell survival. The decision between apoptosis and cell survival involves the interplay between two sequential signalling complexes. The plasma membrane-bound complex I is comprised of TNFR1, TRADD, the kinase RIP1, and TRAF2, which together mediate the activation of NF-kappaB. Subsequently, complex II is formed in the cytoplasm, where TRADD and RIP1 associate with FADD and caspase-8. If NF-kappaB is activated by complex I, then complex II will associate with the caspase-8 inhibitor FLIP(L) and the cell survives, while the failure to activate NF-kappaB leads to apoptosis []. The TRADD C-terminal death domain is responsible for its association with TNFR1, and with the death-domain proteins FADD and RIP1, which promote apoptosis. The TRADD N-terminal domain binds TRAF2 and promotes TRAF2 recruitment to TNFR1, thereby mediating the activation of NK-kappaB and JNK/AP1, which promote cell survival []. The N-terminal TRADD domain is composed of an alpha-beta sandwich, where the beta strands form an antiparallel beta-sheet.; GO: 0004871 signal transducer activity, 0006917 induction of apoptosis, 0043123 positive regulation of I-kappaB kinase/NF-kappaB cascade, 0005737 cytoplasm; PDB: 1F3V_A 1F2H_A.
Probab=26.86 E-value=34 Score=23.67 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=15.8
Q ss_pred ccchHHHHHHHHHHHHHHH
Q psy17432 46 EFGIIRDVMQNHLLQILSL 64 (83)
Q Consensus 46 ~~G~iRDmvQNHLlQ~l~l 64 (83)
+.|++|+-+|+|+--.|++
T Consensus 41 reGalr~~Lq~~l~~~La~ 59 (111)
T PF09034_consen 41 REGALRQSLQQHLARALAL 59 (111)
T ss_dssp HCCHHHHHHHHHHHHHCT-
T ss_pred hccHHHHHHHHHHHHHhhc
Confidence 5699999999999877766
No 29
>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope
Probab=25.51 E-value=10 Score=28.27 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=23.4
Q ss_pred cccCCCCcceeEEEeeCCCCccccccc
Q psy17432 17 PTWNRENIASVMITFKEPFGTQGRGGY 43 (83)
Q Consensus 17 ~~Wn~~~I~~VqI~~~E~~gvegR~~y 43 (83)
|+|+.+.+++|+++-.++-+..+|..|
T Consensus 1 ~~~~~~~~~~v~~~h~~p~~~~d~~A~ 27 (207)
T PF01786_consen 1 PIYTEEELESVQVTHREPKTFSDRVAY 27 (207)
T ss_pred CCCCHHHHhhcccccCCCCcHHHHHHH
Confidence 789999999999999999888887644
No 30
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=24.18 E-value=37 Score=22.61 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=21.6
Q ss_pred cccccccchHHHHHHHHHHHHHHHHh
Q psy17432 41 GGYFDEFGIIRDVMQNHLLQILSLVA 66 (83)
Q Consensus 41 ~~yyd~~G~iRDmvQNHLlQ~l~lva 66 (83)
-+||.+.|=|-|=+.++|+-.+.-..
T Consensus 41 L~YY~~igWISe~V~~~L~~~~~G~~ 66 (99)
T PF04659_consen 41 LDYYESIGWISEEVREQLLKYLKGFK 66 (99)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHhCCC
Confidence 37999999999999999888775444
No 31
>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []. It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.
Probab=23.50 E-value=17 Score=28.78 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=21.1
Q ss_pred cccccccchHHHHHHHHHHHHHHHHhhCCCCCC
Q psy17432 41 GGYFDEFGIIRDVMQNHLLQILSLVAMEKPATI 73 (83)
Q Consensus 41 ~~yyd~~G~iRDmvQNHLlQ~l~lvaMe~P~~~ 73 (83)
.+||+.. .=|..|..|||++.+| |.+...
T Consensus 11 wg~ye~~---~s~K~hLGLqlMs~ma-ERDaai 39 (301)
T PF06217_consen 11 WGYYEPQ---NSMKGHLGLQLMSIMA-ERDAAI 39 (301)
T ss_pred ccccccc---ccccccccceeecccc-ccCccc
Confidence 5599977 4455567889999877 776553
No 32
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=22.01 E-value=1e+02 Score=28.26 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=32.5
Q ss_pred cccccC-CCCcceeEEEeeCCCCcccccccccccchHHHHHHHHH
Q psy17432 15 FTPTWN-RENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHL 58 (83)
Q Consensus 15 ~~~~Wn-~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHL 58 (83)
.+|+|+ +..|..|+|+=.|++|=..===.---+|+.||+.-|-+
T Consensus 784 v~Pvw~~~grv~~~e~iPl~eL~RPRIDV~~~~sG~fRD~fp~~~ 828 (1098)
T PF02514_consen 784 VRPVWDSSGRVSGVELIPLEELGRPRIDVVVRISGLFRDAFPNLI 828 (1098)
T ss_pred ceeccCCCCCCCCceeccHHHcCCCCeeEEEecchhhHHHhHHHH
Confidence 689998 57999999999888853211112336899999999865
No 33
>KOG0099|consensus
Probab=21.86 E-value=20 Score=29.01 Aligned_cols=23 Identities=13% Similarity=0.437 Sum_probs=18.2
Q ss_pred hhhccccccccCCCCcceeEEEe
Q psy17432 9 RFGNRIFTPTWNRENIASVMITF 31 (83)
Q Consensus 9 RfaN~~~~~~Wn~~~I~~VqI~~ 31 (83)
|=|=.+|+++||+++...+-|.+
T Consensus 252 ~EaL~LFksiWnNRwL~tisvIl 274 (379)
T KOG0099|consen 252 QEALNLFKSIWNNRWLRTISVIL 274 (379)
T ss_pred HHHHHHHHHHHhhhHHhhhheeE
Confidence 34445799999999999988764
No 34
>KOG4128|consensus
Probab=21.71 E-value=75 Score=26.45 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHHHHHHHhhCCCCCCCch
Q psy17432 48 GIIRDVMQNHLLQILSLVAMEKPATIHPD 76 (83)
Q Consensus 48 G~iRDmvQNHLlQ~l~lvaMe~P~~~~~~ 76 (83)
-.++.||| |++-++|+.-=+||..++=+
T Consensus 208 ~t~~emm~-eiFrviciclg~PPe~FTWe 235 (457)
T KOG4128|consen 208 DTIQEMMP-EIFRVICICLGEPPEVFTWE 235 (457)
T ss_pred HHHHHHHH-HHHHHHhhhcCCCcceeeEE
Confidence 46888999 99999999888999776543
No 35
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=21.71 E-value=1.2e+02 Score=28.51 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=33.1
Q ss_pred cccccC-CCCcceeEEEeeCCCCcccccccccccchHHHHHHHHH
Q psy17432 15 FTPTWN-RENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHL 58 (83)
Q Consensus 15 ~~~~Wn-~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHL 58 (83)
.+|+|+ ...|..|+++=-|++|=..===-.--+|+.||++.|-+
T Consensus 984 vrPvwd~~GrV~g~elIPLeeLGRPRIDVvv~iSGiFRD~fp~~i 1028 (1310)
T PRK12493 984 ARPVPDELGRVNKVELIPLEELGRPRIDVVVTCSGIFRDLFINQM 1028 (1310)
T ss_pred CccccCCCCCccceEEeCHHHcCCCCeeEEEEecchhHhhHHHHH
Confidence 578994 78899999999998863321123456899999998865
No 36
>TIGR02025 BchH magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring.
Probab=21.03 E-value=1.2e+02 Score=28.29 Aligned_cols=44 Identities=20% Similarity=0.195 Sum_probs=33.3
Q ss_pred cccccC-CCCcceeEEEeeCCCCcccccccccccchHHHHHHHHH
Q psy17432 15 FTPTWN-RENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHL 58 (83)
Q Consensus 15 ~~~~Wn-~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHL 58 (83)
.+|+|+ ...|..++++=-|++|=..-==-.--+|+.||+..|-+
T Consensus 892 vrPvwd~~GrV~g~elIPL~eLgRPRIDVvv~iSGiFRD~fp~~i 936 (1216)
T TIGR02025 892 AEPVPDALGRIVRYELIPLEKLGRPRIDVVVTLSGIFRDLFVNQM 936 (1216)
T ss_pred CccccCCCCCccceEEeCHHHcCCCCeeEEEEecchhHhhHHHHH
Confidence 578994 78899999999888864322224457899999998865
No 37
>KOG4278|consensus
Probab=20.38 E-value=83 Score=28.69 Aligned_cols=56 Identities=21% Similarity=0.449 Sum_probs=40.9
Q ss_pred ccccCCCCcceeEEEeeCCCCccccccccc---------------------------ccchHHHHHHHHHHHHHHHHhhC
Q psy17432 16 TPTWNRENIASVMITFKEPFGTQGRGGYFD---------------------------EFGIIRDVMQNHLLQILSLVAME 68 (83)
Q Consensus 16 ~~~Wn~~~I~~VqI~~~E~~gvegR~~yyd---------------------------~~G~iRDmvQNHLlQ~l~lvaMe 68 (83)
.|.-++.-.++-.|||+-.+|-..=|.-|+ ++-+++|+=.-.|-|+|..++-|
T Consensus 256 SPn~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~E 335 (1157)
T KOG4278|consen 256 SPNADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHE 335 (1157)
T ss_pred cCCcchhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhccC
Confidence 344455566777778887777766665554 34567777777899999999999
Q ss_pred CCC
Q psy17432 69 KPA 71 (83)
Q Consensus 69 ~P~ 71 (83)
||-
T Consensus 336 pPF 338 (1157)
T KOG4278|consen 336 PPF 338 (1157)
T ss_pred CCe
Confidence 994
No 38
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=20.14 E-value=93 Score=18.66 Aligned_cols=29 Identities=21% Similarity=0.436 Sum_probs=22.2
Q ss_pred ccccccch--HHHHHHHHHHHHHHHHhhCCC
Q psy17432 42 GYFDEFGI--IRDVMQNHLLQILSLVAMEKP 70 (83)
Q Consensus 42 ~yyd~~G~--iRDmvQNHLlQ~l~lvaMe~P 70 (83)
+|-..+|| ||-++++|+...||-.-..-+
T Consensus 42 ~~~~~~GAR~l~r~i~~~i~~~la~~il~~~ 72 (81)
T PF10431_consen 42 GYDPEYGARPLRRIIEREIEPPLADAILSGK 72 (81)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred CcccCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36677886 999999999999886554433
Done!