Query psy17432
Match_columns 83
No_of_seqs 117 out of 774
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 22:19:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bh9_A G6PD, glucose-6-phospha 100.0 2E-49 6.8E-54 318.7 4.7 83 1-83 181-263 (489)
2 1dpg_A G6PD, glucose 6-phospha 100.0 1.5E-49 5.1E-54 319.1 3.9 83 1-83 184-266 (485)
3 4e9i_A Glucose-6-phosphate 1-d 100.0 3.8E-49 1.3E-53 320.0 2.7 83 1-83 239-321 (541)
4 1vf6_A PALS-1, PALS1-associate 40.9 11 0.00038 23.9 1.3 20 45-64 26-46 (83)
5 1wvt_A Hypothetical protein ST 27.1 62 0.0021 22.3 3.5 27 52-79 55-81 (172)
6 1ydm_A Hypothetical protein YQ 21.3 25 0.00085 23.8 0.5 7 41-47 137-143 (187)
7 3dcg_E Virion infectivity fact 20.6 62 0.0021 17.8 1.9 16 58-73 7-22 (39)
8 1nrp_R Receptor based peptide 19.3 33 0.0011 17.2 0.6 18 6-23 6-23 (26)
9 3g36_A Protein DPY-30 homolog; 19.3 66 0.0023 18.4 2.0 22 51-72 14-35 (55)
10 3hy3_A 5-formyltetrahydrofolat 17.6 20 0.00068 24.6 -0.7 7 41-47 150-156 (203)
No 1
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A*
Probab=100.00 E-value=2e-49 Score=318.68 Aligned_cols=83 Identities=77% Similarity=1.315 Sum_probs=81.9
Q ss_pred ChhhhhhHhhhccccccccCCCCcceeEEEeeCCCCcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCchhHhh
Q psy17432 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRN 80 (83)
Q Consensus 1 ~vqnll~lRfaN~~~~~~Wn~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHLlQ~l~lvaMe~P~~~~~~dir~ 80 (83)
||||||+|||+|.+|||+|||+||++||||++|++||||||+|||++|||||||||||||+|||+|||||.++++++||+
T Consensus 181 ~VQNll~lRFaN~ifeplWNr~~Id~VqIt~aE~~GvegRggYYD~~GalRDmvQNHLlQlL~lvAMEpP~s~~a~~iRd 260 (489)
T 2bh9_A 181 MVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNSDDVRD 260 (489)
T ss_dssp HHHHHHHHHHSCGGGSTTCSTTTEEEEEEEEECSCCCTTCHHHHTTTHHHHHTTTTHHHHHHHHHHCCCCSSSSHHHHHH
T ss_pred HHHHHHHHHHhhHHHHhhhcccccceEEEEEecCCCccchhhhhhccchHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy17432 81 EKI 83 (83)
Q Consensus 81 ~K~ 83 (83)
||+
T Consensus 261 EKv 263 (489)
T 2bh9_A 261 EKV 263 (489)
T ss_dssp HHH
T ss_pred HHH
Confidence 995
No 2
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5 PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A* 1h9b_A 2dpg_A*
Probab=100.00 E-value=1.5e-49 Score=319.10 Aligned_cols=83 Identities=45% Similarity=0.817 Sum_probs=82.0
Q ss_pred ChhhhhhHhhhccccccccCCCCcceeEEEeeCCCCcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCchhHhh
Q psy17432 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRN 80 (83)
Q Consensus 1 ~vqnll~lRfaN~~~~~~Wn~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHLlQ~l~lvaMe~P~~~~~~dir~ 80 (83)
||||||+|||+|.+|||+|||+||++||||++|++||||||+|||++|||||||||||||+|||+|||||.++++++||+
T Consensus 184 ~VQNll~lRFaN~ifeplWNr~~Id~VqIt~aE~~GvegRggYYD~~GalRDmvQNHLlQlL~lvAMEpP~s~~a~~iRd 263 (485)
T 1dpg_A 184 MVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQIVGWLAMEKPESFTDKDIRA 263 (485)
T ss_dssp GGGGHHHHHHTCHHHHTTSSTTTEEEEEEEEECSCCCTTCHHHHHHHHHHHHTTTTHHHHHHHHHHCCCCSSSSHHHHHH
T ss_pred HHHHHHHHHHhhHhhhhhhcccCceeEEEEEecCCCcChhhcchhccchHHHHHHHHHHHHHHHHHcCCccCCCHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy17432 81 EKI 83 (83)
Q Consensus 81 ~K~ 83 (83)
||+
T Consensus 264 EKv 266 (485)
T 1dpg_A 264 AKN 266 (485)
T ss_dssp HHH
T ss_pred HHH
Confidence 995
No 3
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway, alpha beta, NAD(P) rossmann-like domain, oxidoreductase; 2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Probab=100.00 E-value=3.8e-49 Score=319.98 Aligned_cols=83 Identities=63% Similarity=1.078 Sum_probs=81.9
Q ss_pred ChhhhhhHhhhccccccccCCCCcceeEEEeeCCCCcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCchhHhh
Q psy17432 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRN 80 (83)
Q Consensus 1 ~vqnll~lRfaN~~~~~~Wn~~~I~~VqI~~~E~~gvegR~~yyd~~G~iRDmvQNHLlQ~l~lvaMe~P~~~~~~dir~ 80 (83)
||||||+|||+|.+|+|+|||+||++||||++|++||||||+|||++|||||||||||||+|||+|||||.++++++||+
T Consensus 239 ~VQNll~lRFaN~ifeplWNr~~Id~VQIt~aE~~GvegRggYYD~~GalRDmvQNHLlQlL~LvAMEpP~s~~a~~iRd 318 (541)
T 4e9i_A 239 MVQNIIVTRFANRVFSALWNSNSIACVQITFKEKIGTAGRGGYFDSIGIIRDVIQNHLTQILSLLTMEKPRSLSAEDIRD 318 (541)
T ss_dssp HHHTHHHHHHSCHHHHHHCSTTTEEEEEEEEECSCCCTTCHHHHHHHHHHHHTTTTHHHHHHHHHHCCCCSSSSHHHHHH
T ss_pred HHHHHHHHHHhhHhhhhhhcccCccceEEEecCCcCcccccccccccchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy17432 81 EKI 83 (83)
Q Consensus 81 ~K~ 83 (83)
||+
T Consensus 319 EKv 321 (541)
T 4e9i_A 319 EKV 321 (541)
T ss_dssp HHH
T ss_pred HHH
Confidence 995
No 4
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=40.87 E-value=11 Score=23.92 Aligned_cols=20 Identities=25% Similarity=0.617 Sum_probs=15.8
Q ss_pred cccchHHHHHHHHHH-HHHHH
Q psy17432 45 DEFGIIRDVMQNHLL-QILSL 64 (83)
Q Consensus 45 d~~G~iRDmvQNHLl-Q~l~l 64 (83)
|+-+.+|+|+|.=|+ |||++
T Consensus 26 ekLs~lk~~LqSPLF~qILtl 46 (83)
T 1vf6_A 26 EKLSMFYETLKSPLFNQILTL 46 (83)
T ss_dssp HHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHhCHHHHHHHHH
Confidence 567899999998776 66665
No 5
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function; 2.30A {Sulfolobus tokodaii}
Probab=27.07 E-value=62 Score=22.29 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCchhHh
Q psy17432 52 DVMQNHLLQILSLVAMEKPATIHPDDIR 79 (83)
Q Consensus 52 DmvQNHLlQ~l~lvaMe~P~~~~~~dir 79 (83)
.-|||.|+.+-+-+| ..|..++++++.
T Consensus 55 ~~IQ~~Lf~lga~la-~~~~~i~~~~v~ 81 (172)
T 1wvt_A 55 QKLQNDIFSISSEIA-GFDMNFSDEKVK 81 (172)
T ss_dssp HHHHHHHHHHHHHHT-TCCCCCCTHHHH
T ss_pred HHHHHHHHHHHHHhc-CCCCCCCHHHHH
Confidence 348999999999999 546667777764
No 6
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=21.33 E-value=25 Score=23.76 Aligned_cols=7 Identities=57% Similarity=1.725 Sum_probs=5.6
Q ss_pred ccccccc
Q psy17432 41 GGYFDEF 47 (83)
Q Consensus 41 ~~yyd~~ 47 (83)
|||||.+
T Consensus 137 gGyYDR~ 143 (187)
T 1ydm_A 137 GGYYDRY 143 (187)
T ss_dssp CCSTTTG
T ss_pred ccHHHHH
Confidence 4699986
No 7
>3dcg_E Virion infectivity factor; HIV, VIF, AIDS, HOST-virus interaction, membrane, phosphoPro RNA-binding, UBL conjugation pathway; 2.40A {Human immunodeficiency virus type 1}
Probab=20.61 E-value=62 Score=17.75 Aligned_cols=16 Identities=50% Similarity=0.625 Sum_probs=12.6
Q ss_pred HHHHHHHHhhCCCCCC
Q psy17432 58 LLQILSLVAMEKPATI 73 (83)
Q Consensus 58 LlQ~l~lvaMe~P~~~ 73 (83)
-+|-|||.|.-.|...
T Consensus 7 sLQyLAL~alv~pkk~ 22 (39)
T 3dcg_E 7 SLQYLALAALIKPKQI 22 (39)
T ss_pred HHHHHHHHHHhccCCC
Confidence 3799999999877653
No 8
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=19.33 E-value=33 Score=17.16 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=13.9
Q ss_pred hhHhhhccccccccCCCC
Q psy17432 6 MTMRFGNRIFTPTWNREN 23 (83)
Q Consensus 6 l~lRfaN~~~~~~Wn~~~ 23 (83)
+.+|-.|.-++|.|..+.
T Consensus 6 fllrnpndkyepfwedee 23 (26)
T 1nrp_R 6 FLLRNPNDKYEPFWEDEE 23 (26)
T ss_pred hhhcCCCcccCccccccc
Confidence 346888889999997653
No 9
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=19.33 E-value=66 Score=18.39 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC
Q psy17432 51 RDVMQNHLLQILSLVAMEKPAT 72 (83)
Q Consensus 51 RDmvQNHLlQ~l~lvaMe~P~~ 72 (83)
.+-|--.|+|-|+-+|.+.|.+
T Consensus 14 ~~~V~p~L~~GL~~lak~rP~D 35 (55)
T 3g36_A 14 DQTVVPILLQGMAVLAKERPPN 35 (55)
T ss_dssp HTTTHHHHHHHHHHHHHHCCSC
T ss_pred HHHhHHHHHHHHHHHHHhCCCC
Confidence 3446677999999999999964
No 10
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A
Probab=17.59 E-value=20 Score=24.56 Aligned_cols=7 Identities=43% Similarity=1.341 Sum_probs=5.8
Q ss_pred ccccccc
Q psy17432 41 GGYFDEF 47 (83)
Q Consensus 41 ~~yyd~~ 47 (83)
|||||.+
T Consensus 150 gGyYDR~ 156 (203)
T 3hy3_A 150 KGYYDAY 156 (203)
T ss_dssp SCHHHHH
T ss_pred CchHHHH
Confidence 5799987
Done!