RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17432
(83 letters)
>gnl|CDD|240353 PTZ00309, PTZ00309, glucose-6-phosphate 1-dehydrogenase;
Provisional.
Length = 542
Score = 170 bits (433), Expect = 2e-52
Identities = 58/83 (69%), Positives = 70/83 (84%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
MVQNL+ +RF NR+F P WNR NIA V ITFKE GT+GRGGYFD +GIIRDVMQNHLLQ
Sbjct: 237 MVQNLIVLRFANRVFEPLWNRNNIACVQITFKEDIGTEGRGGYFDSYGIIRDVMQNHLLQ 296
Query: 61 ILSLVAMEKPATIHPDDIRNEKI 83
IL+L+AMEKP ++ +DIR+EK+
Sbjct: 297 ILALLAMEKPVSLSAEDIRDEKV 319
>gnl|CDD|217228 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal
domain.
Length = 294
Score = 159 bits (404), Expect = 2e-50
Identities = 57/78 (73%), Positives = 67/78 (85%)
Query: 6 MTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLV 65
+ +RFGN IF P WNR+NI +V ITFKEPFGT+GRGGYFDEFGIIRD+MQNHLLQIL LV
Sbjct: 1 LVLRFGNEIFNPLWNRDNIDNVQITFKEPFGTEGRGGYFDEFGIIRDMMQNHLLQILCLV 60
Query: 66 AMEKPATIHPDDIRNEKI 83
AMEKP + +DIR+EK+
Sbjct: 61 AMEKPVSFSAEDIRDEKV 78
>gnl|CDD|233162 TIGR00871, zwf, glucose-6-phosphate 1-dehydrogenase. This enzyme
(EC 1.1.1.49) acts on glucose 6-phospate and reduces
NADP(+). An alternate name appearing in the literature
for the human enzyme, based on a slower activity with
beta-D-glucose, is glucose 1-dehydrogenase (EC
1.1.1.47), but that name more properly describes a
subfamily of the short chain dehydrogenases/reductases
family. This is a well-studied enzyme family, with
sequences available from well over 50 species. The
trusted cutoff is set above the score for the Drosophila
melanogaster CG7140 gene product, a homolog of unknown
function. G6PD homologs from the bacteria Aquifex
aeolicus and Helicobacter pylori lack several motifs
well conserved most other members, were omitted from the
seed alignment, and score well below the trusted cutoff
[Energy metabolism, Pentose phosphate pathway].
Length = 482
Score = 161 bits (410), Expect = 2e-49
Identities = 49/83 (59%), Positives = 62/83 (74%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
VQNL+ +RF N+IF P WNR I V ITF E FG +GRGGY+D+ G +RD++QNHLLQ
Sbjct: 182 TVQNLLVLRFANQIFEPLWNRRYIDHVQITFAESFGVEGRGGYYDKSGALRDMVQNHLLQ 241
Query: 61 ILSLVAMEKPATIHPDDIRNEKI 83
+L LVAME PA+ D IR+EK+
Sbjct: 242 LLCLVAMEPPASFDADSIRDEKV 264
>gnl|CDD|178154 PLN02539, PLN02539, glucose-6-phosphate 1-dehydrogenase.
Length = 491
Score = 161 bits (409), Expect = 2e-49
Identities = 55/83 (66%), Positives = 71/83 (85%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
+VQNL+ +RF NR F P WNR+NIA+V I F+E FGT+GRGGYFDE+GIIRD++QNHLLQ
Sbjct: 201 LVQNLLVLRFANRFFLPLWNRDNIANVQIVFREDFGTEGRGGYFDEYGIIRDIIQNHLLQ 260
Query: 61 ILSLVAMEKPATIHPDDIRNEKI 83
+L LVAMEKP ++ P+ IR+EK+
Sbjct: 261 VLCLVAMEKPVSLKPEHIRDEKV 283
>gnl|CDD|223441 COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate
transport and metabolism].
Length = 483
Score = 145 bits (368), Expect = 2e-43
Identities = 48/83 (57%), Positives = 60/83 (72%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
VQNL+ +RF N IF P WNR I V IT E G +GRGGY+D+ G +RD++QNHLLQ
Sbjct: 181 TVQNLLALRFANAIFEPLWNRNYIDHVQITVAETLGVEGRGGYYDKAGALRDMVQNHLLQ 240
Query: 61 ILSLVAMEKPATIHPDDIRNEKI 83
+L LVAME PA+ DDIR+EK+
Sbjct: 241 LLCLVAMEPPASFSADDIRDEKV 263
>gnl|CDD|235579 PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.
Length = 495
Score = 139 bits (352), Expect = 6e-41
Identities = 46/83 (55%), Positives = 61/83 (73%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
VQNL+ +RF N +F P WNR I V IT E G +GRGGY+D+ G +RD++QNHLLQ
Sbjct: 191 TVQNLLALRFANALFEPLWNRNYIDHVQITVAETVGVEGRGGYYDKSGALRDMVQNHLLQ 250
Query: 61 ILSLVAMEKPATIHPDDIRNEKI 83
+L+LVAME PA++ D IR+EK+
Sbjct: 251 LLALVAMEPPASLDADSIRDEKV 273
>gnl|CDD|237233 PRK12853, PRK12853, glucose-6-phosphate 1-dehydrogenase;
Provisional.
Length = 482
Score = 133 bits (338), Expect = 4e-39
Identities = 43/82 (52%), Positives = 58/82 (70%)
Query: 2 VQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQI 61
VQNL+ +RF N + P WNR +I V IT E G +GRGG++D G +RD++QNHLLQ+
Sbjct: 182 VQNLLALRFANALLEPLWNRNHIDHVQITVAETLGVEGRGGFYDATGALRDMVQNHLLQL 241
Query: 62 LSLVAMEKPATIHPDDIRNEKI 83
L+LVAME PA+ D +R+EK
Sbjct: 242 LALVAMEPPASFDADAVRDEKA 263
>gnl|CDD|215191 PLN02333, PLN02333, glucose-6-phosphate 1-dehydrogenase.
Length = 604
Score = 127 bits (319), Expect = 6e-36
Identities = 50/83 (60%), Positives = 64/83 (77%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
+V+NL +RF N IF P W+R+ I +V F E FGT+GRGGYFD +GIIRD+MQNHLLQ
Sbjct: 297 LVENLSVLRFSNLIFEPLWSRQYIRNVQFIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQ 356
Query: 61 ILSLVAMEKPATIHPDDIRNEKI 83
IL+L AME P ++ +DIRNEK+
Sbjct: 357 ILALFAMETPVSLDAEDIRNEKV 379
>gnl|CDD|215344 PLN02640, PLN02640, glucose-6-phosphate 1-dehydrogenase.
Length = 573
Score = 122 bits (307), Expect = 2e-34
Identities = 49/83 (59%), Positives = 64/83 (77%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
+V+NL +RF N +F P W+R I +V + F E FGT+GRGGYFD +GIIRD+MQNHLLQ
Sbjct: 268 LVENLSVLRFSNLVFEPLWSRNYIRNVQLIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQ 327
Query: 61 ILSLVAMEKPATIHPDDIRNEKI 83
IL+L AME P ++ +DIRNEK+
Sbjct: 328 ILALFAMETPVSLDAEDIRNEKV 350
>gnl|CDD|237234 PRK12854, PRK12854, glucose-6-phosphate 1-dehydrogenase;
Provisional.
Length = 484
Score = 100 bits (250), Expect = 1e-26
Identities = 35/81 (43%), Positives = 45/81 (55%)
Query: 2 VQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQI 61
QN++ RF N +F P WNRE I V I E G R ++D G RD++ HL Q+
Sbjct: 190 AQNILAFRFANGLFEPIWNREFIDHVQIDVPETLGVDTRAAFYDATGAYRDMVVTHLFQV 249
Query: 62 LSLVAMEKPATIHPDDIRNEK 82
L+ VAME P + PD I EK
Sbjct: 250 LAFVAMEPPTALEPDAISEEK 270
>gnl|CDD|227816 COG5529, COG5529, Pyocin large subunit [General function prediction
only].
Length = 326
Score = 27.7 bits (61), Expect = 0.64
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 13 RIFTPTWNRENIASVMITFKEPFGTQGRGGYFDE 46
RI+ P WN + + F GGY++
Sbjct: 292 RIYDPQWNTFAVFISDGNPRTMFKPTHGGGYWEP 325
>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional.
Length = 370
Score = 26.7 bits (59), Expect = 1.6
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 10 FGN--RIFTPTWNRENIASVMITFKEPFGTQG 39
FG+ + F + EN +V++T+ + G+ G
Sbjct: 187 FGDDGKGFCHSLGYENFYAVLVTYSKALGSMG 218
>gnl|CDD|100096 cd05803, PGM_like4, This PGM-like (phosphoglucomutase-like) domain
is located C-terminal to a mannose-1-phosphate
guanyltransferase domain in a protein of unknown
function that is found in both prokaryotes and
eukaryotes. This domain belongs to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 445
Score = 26.1 bits (58), Expect = 2.5
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 23 NIASVMITFKEPFGTQGRGGYFD-EFGIIRDVMQNHLLQILSLVAMEKPA 71
N+ M G +G GG + RD + L +L L+A
Sbjct: 310 NVVEKMKEVDAVIGGEGNGGVILPDVHYGRDSLVGIAL-VLQLLAASGKP 358
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.141 0.423
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,370,300
Number of extensions: 352732
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 18
Length of query: 83
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 31
Effective length of database: 8,631,194
Effective search space: 267567014
Effective search space used: 267567014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)