RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17432
(83 letters)
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase,
oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism,
glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB:
2bhl_A* 1qki_A*
Length = 489
Score = 179 bits (456), Expect = 2e-56
Identities = 64/83 (77%), Positives = 75/83 (90%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
MVQNLM +RF NRIF P WNR+NIA V++TFKEPFGT+GRGGYFDEFGIIRDVMQNHLLQ
Sbjct: 181 MVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQ 240
Query: 61 ILSLVAMEKPATIHPDDIRNEKI 83
+L LVAMEKPA+ + DD+R+EK+
Sbjct: 241 MLCLVAMEKPASTNSDDVRDEKV 263
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway,
alpha beta, NAD(P) rossmann-like domain, oxidoreductase;
2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Length = 541
Score = 178 bits (455), Expect = 6e-56
Identities = 52/83 (62%), Positives = 64/83 (77%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
MVQN++ RF NR+F+ WN +IA V ITFKE GT GRGGYFD GIIRDV+QNHL Q
Sbjct: 239 MVQNIIVTRFANRVFSALWNSNSIACVQITFKEKIGTAGRGGYFDSIGIIRDVIQNHLTQ 298
Query: 61 ILSLVAMEKPATIHPDDIRNEKI 83
ILSL+ MEKP ++ +DIR+EK+
Sbjct: 299 ILSLLTMEKPRSLSAEDIRDEKV 321
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD,
glucose metabolism, oxidoreductase (CHOH(D) - NAD(P));
2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5
PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A*
1h9b_A 2dpg_A*
Length = 485
Score = 156 bits (398), Expect = 6e-48
Identities = 37/83 (44%), Positives = 52/83 (62%)
Query: 1 MVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQ 60
MVQN+ +RFGN IF WN++ I +V +T E G + R GY+D G + D++QNH +Q
Sbjct: 184 MVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQ 243
Query: 61 ILSLVAMEKPATIHPDDIRNEKI 83
I+ +AMEKP + DIR K
Sbjct: 244 IVGWLAMEKPESFTDKDIRAAKN 266
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.002
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 27/70 (38%)
Query: 35 FGTQG-RGGYFDEF--------GIIRDVMQNHLLQILSLVA------------------M 67
FG QG YF+E ++ D+++ + L+ +
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 68 EKPATIHPDD 77
E P+ D
Sbjct: 220 ENPSNTPDKD 229
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 0.53
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 14/61 (22%)
Query: 13 RIFTPTWNR---------ENIASVMITFKEPFGTQGRGGYFDEFGIIR-DV-MQNHLLQI 61
R TW+ I + EP + FD + + LL +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK---MFDRLSVFPPSAHIPTILLSL 394
Query: 62 L 62
+
Sbjct: 395 I 395
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural
genomics, nysgrc, target 9523C, phosphinate inhibitor,
PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB:
3fdg_A
Length = 364
Score = 25.4 bits (56), Expect = 2.1
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 9 RFGNRIFTPTWNRENIASVMITFKEPFGTQGRGG 42
G R P W+R + + F+ P G
Sbjct: 156 SLGLRSLGPVWSRPTVFGHGVPFRFPGSPDTGEG 189
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET
lactamase, cilastatin, complex (hydrolase-inhibitor),
hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7
PDB: 1itq_A*
Length = 369
Score = 25.0 bits (55), Expect = 3.5
Identities = 5/34 (14%), Positives = 8/34 (23%)
Query: 9 RFGNRIFTPTWNRENIASVMITFKEPFGTQGRGG 42
+ G R T T + + G
Sbjct: 142 QLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQG 175
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 417
Score = 24.9 bits (54), Expect = 3.7
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 9 RFGNRIFTPTWNREN 23
G R+F ++ N
Sbjct: 155 ARGVRMFGFSYVGNN 169
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target
9257A, protein structure initiative; 2.00A {Caulobacter
crescentus}
Length = 417
Score = 24.8 bits (54), Expect = 3.8
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 9 RFGNRIFTPTWNREN 23
+ G R+ P R N
Sbjct: 176 KEGLRMAGPVHFRNN 190
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A
{Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A*
3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Length = 400
Score = 24.4 bits (53), Expect = 5.6
Identities = 6/15 (40%), Positives = 6/15 (40%)
Query: 9 RFGNRIFTPTWNREN 23
G R T T N N
Sbjct: 140 ALGVRYMTLTHNDNN 154
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc,
dipeptide L-Leu-D-Ala, PSI-2, P structure initiative;
HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Length = 318
Score = 24.1 bits (53), Expect = 6.8
Identities = 5/15 (33%), Positives = 5/15 (33%)
Query: 9 RFGNRIFTPTWNREN 23
G TWN N
Sbjct: 124 DGGVLSVGLTWNNAN 138
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 24.0 bits (52), Expect = 6.9
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 48 GII--RDVMQNHLLQILSLVAMEKPATIHPDD 77
GII + ++ N + L+++ + +D
Sbjct: 46 GIISVKRILVNPDEEQLAMLVKRDVPVVKEND 77
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase;
1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*
Length = 320
Score = 23.7 bits (51), Expect = 8.7
Identities = 9/47 (19%), Positives = 13/47 (27%)
Query: 7 TMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDV 53
T+ G + W E I + E + EFG
Sbjct: 221 TLPIGVKWEGKDWEVEQIRNHFKYVSEWAKKNNVPIFLGEFGAYSKA 267
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.141 0.423
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,314,614
Number of extensions: 67011
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 17
Length of query: 83
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 32
Effective length of database: 5,277,822
Effective search space: 168890304
Effective search space used: 168890304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)