BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17439
(576 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QKI|A Chain A, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|B Chain B, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|C Chain C, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|D Chain D, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|E Chain E, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|F Chain F, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|G Chain G, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|H Chain H, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
Length = 514
Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 103/144 (71%), Positives = 120/144 (83%)
Query: 432 KVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVLKIKNE 491
KVKVLKCI +Q +VVLGQY G+P+GEG+A GYLDD TVP GS T TFA+ VL ++NE
Sbjct: 287 KVKVLKCISEVQANNVVLGQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENE 346
Query: 492 RWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTK 551
RWDGVPFILRCGKALNERKA++R+Q+ DV GDIF + KRNELV+RVQP EAVY KMMTK
Sbjct: 347 RWDGVPFILRCGKALNERKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTK 406
Query: 552 TPGMSFDMEETELDLTYGSRYKCV 575
PGM F+ EE+ELDLTYG+RYK V
Sbjct: 407 KPGMFFNPEESELDLTYGNRYKNV 430
Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 96/127 (75%), Positives = 112/127 (88%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
GW R+I+EKPFG+D SS LSNH+ +LF E+QIYRIDHYLGKEMVQNLM +RF NRIF
Sbjct: 162 GWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFG 221
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
P WNR+NIA V++TFKEPFGT+GRGGYFDEFGIIRDVMQNHLLQ+L LVAMEKPA+ + D
Sbjct: 222 PIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNSD 281
Query: 121 DIRNEKV 127
D+R+EKV
Sbjct: 282 DVRDEKV 288
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 65/89 (73%), Gaps = 4/89 (4%)
Query: 366 NERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDL 425
NERKA++R+Q+ DV GDIF + KRNELV+RVQP EAVY KMMTK PGM F+ EE+ELDL
Sbjct: 362 NERKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDL 421
Query: 426 TYGSRYKVKVLKCIPPLQLEDVVLGQYTG 454
TYG+RYK L P E ++L + G
Sbjct: 422 TYGNRYKNVKL----PDAYERLILDVFCG 446
>pdb|2BH9|A Chain A, X-Ray Structure Of A Deletion Variant Of Human Glucose 6-
Phosphate Dehydrogenase Complexed With Structural And
Coenzyme Nadp
pdb|2BHL|A Chain A, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
pdb|2BHL|B Chain B, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
Length = 489
Score = 219 bits (557), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 103/144 (71%), Positives = 120/144 (83%)
Query: 432 KVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVLKIKNE 491
KVKVLKCI +Q +VVLGQY G+P+GEG+A GYLDD TVP GS T TFA+ VL ++NE
Sbjct: 262 KVKVLKCISEVQANNVVLGQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENE 321
Query: 492 RWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTK 551
RWDGVPFILRCGKALNERKA++R+Q+ DV GDIF + KRNELV+RVQP EAVY KMMTK
Sbjct: 322 RWDGVPFILRCGKALNERKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTK 381
Query: 552 TPGMSFDMEETELDLTYGSRYKCV 575
PGM F+ EE+ELDLTYG+RYK V
Sbjct: 382 KPGMFFNPEESELDLTYGNRYKNV 405
Score = 215 bits (548), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 96/127 (75%), Positives = 112/127 (88%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
GW R+I+EKPFG+D SS LSNH+ +LF E+QIYRIDHYLGKEMVQNLM +RF NRIF
Sbjct: 137 GWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFG 196
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
P WNR+NIA V++TFKEPFGT+GRGGYFDEFGIIRDVMQNHLLQ+L LVAMEKPA+ + D
Sbjct: 197 PIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNSD 256
Query: 121 DIRNEKV 127
D+R+EKV
Sbjct: 257 DVRDEKV 263
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 65/89 (73%), Gaps = 4/89 (4%)
Query: 366 NERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDL 425
NERKA++R+Q+ DV GDIF + KRNELV+RVQP EAVY KMMTK PGM F+ EE+ELDL
Sbjct: 337 NERKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDL 396
Query: 426 TYGSRYKVKVLKCIPPLQLEDVVLGQYTG 454
TYG+RYK L P E ++L + G
Sbjct: 397 TYGNRYKNVKL----PDAYERLILDVFCG 421
>pdb|4E9I|A Chain A, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|B Chain B, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|C Chain C, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|D Chain D, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4EM5|A Chain A, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|B Chain B, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|C Chain C, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|D Chain D, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
Length = 541
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 81/128 (63%), Positives = 100/128 (78%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
GW R+I+EKPFG+D+++S LSN L LF E Q++RIDHYLGKEMVQN++ RF NR+F+
Sbjct: 195 GWVRLIVEKPFGRDTETSEQLSNQLKPLFNERQVFRIDHYLGKEMVQNIIVTRFANRVFS 254
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
WN +IA V ITFKE GT GRGGYFD GIIRDV+QNHL QILSL+ MEKP ++ +
Sbjct: 255 ALWNSNSIACVQITFKEKIGTAGRGGYFDSIGIIRDVIQNHLTQILSLLTMEKPRSLSAE 314
Query: 121 DIRNEKVH 128
DIR+EKV
Sbjct: 315 DIRDEKVQ 322
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 96/143 (67%), Gaps = 8/143 (5%)
Query: 432 KVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVLKIKNE 491
KV+VL+ + P + VLGQYT +G + GYLDD +VP GS+ PTFA L + N+
Sbjct: 320 KVQVLRQVVPANPAECVLGQYTASADG---STPGYLDDPSVPKGSHCPTFAVLRLHVNND 376
Query: 492 RWDGVPFILRCGKALNERKADIRIQYTDVPGDI--FEGKTKRNELVMRVQPGEAVYVKMM 549
RW GVPFI+R GKAL ER DIRIQ+ D +I F T+RNELV+R QP EA+Y+K+
Sbjct: 377 RWHGVPFIIRAGKALEERLLDIRIQFKD---EIRPFGESTQRNELVIRAQPSEAMYLKLT 433
Query: 550 TKTPGMSFDMEETELDLTYGSRY 572
KTPG+ D +TELDLTY RY
Sbjct: 434 AKTPGLLNDTHQTELDLTYERRY 456
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 6/89 (6%)
Query: 367 ERKADIRIQYTDVPGDI--FEGKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELD 424
ER DIRIQ+ D +I F T+RNELV+R QP EA+Y+K+ KTPG+ D +TELD
Sbjct: 393 ERLLDIRIQFKD---EIRPFGESTQRNELVIRAQPSEAMYLKLTAKTPGLLNDTHQTELD 449
Query: 425 LTYGSRYKVKVLKCIPPLQLEDVVLGQYT 453
LTY RY V + L + + +LG T
Sbjct: 450 LTYERRYDVTLPDAYESL-IHEALLGNST 477
>pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With
Substrate
pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
pdb|1H9B|A Chain A, Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 83/126 (65%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
G+ R++IEKPFG D++ L N L F + Q++RIDHYLGKEMVQN+ +RFGN IF
Sbjct: 140 GYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNIAALRFGNPIFD 199
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
WN++ I +V +T E G + R GY+D G + D++QNH +QI+ +AMEKP +
Sbjct: 200 AAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQIVGWLAMEKPESFTDK 259
Query: 121 DIRNEK 126
DIR K
Sbjct: 260 DIRAAK 265
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 466 YLDDKTVPPGSNTPTFASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIF 525
YL++ VP S TF + L+ RW+GVPF +R GK L ++ + I + + F
Sbjct: 300 YLEELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFN-F 358
Query: 526 EGKTKRNELVMR--VQPGEAVYVKMMTKTPGMSFDMEETELDLT 567
+ + E V+ + P A+ +K+ K+ +F+ +L T
Sbjct: 359 GSEQEACEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWT 402
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
pdb|1DPG|B Chain B, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
Length = 485
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 83/126 (65%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
G+ R++IEKPFG D++ L N L F + Q++RIDHYLGKEMVQN+ +RFGN IF
Sbjct: 140 GYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNIAALRFGNPIFD 199
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
WN++ I +V +T E G + R GY+D G + D++QNH +QI+ +AMEKP +
Sbjct: 200 AAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQIVGWLAMEKPESFTDK 259
Query: 121 DIRNEK 126
DIR K
Sbjct: 260 DIRAAK 265
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 466 YLDDKTVPPGSNTPTFASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIF 525
YL++ VP S TF + L+ RW+GVPF +R GK L ++ + I + + F
Sbjct: 300 YLEELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFN-F 358
Query: 526 EGKTKRNELVMR--VQPGEAVYVKMMTKTPGMSFDMEETELDLT 567
+ + E V+ + P A+ +K+ K+ +F+ +L T
Sbjct: 359 GSEQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWT 402
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1H94|A Chain A, Complex Of Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From L.Mesenteroides With Coenzyme Nad
Length = 485
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 83/126 (65%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
G+ R++IEKPFG D++ L N L F + Q++RIDHYLGKEMVQN+ +RFGN IF
Sbjct: 140 GYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNIAALRFGNPIFD 199
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
WN++ I +V +T E G + R GY+D G + D++QNH +QI+ +AMEKP +
Sbjct: 200 AAWNKDYIKNVQVTLCEVLGVEERAGYYDTAGALLDMIQNHTMQIVGWLAMEKPESFTDK 259
Query: 121 DIRNEK 126
DIR K
Sbjct: 260 DIRAAK 265
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 466 YLDDKTVPPGSNTPTFASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIF 525
YL++ VP S TF + L+ RW+GVPF +R GK L ++ + I + + F
Sbjct: 300 YLEELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFN-F 358
Query: 526 EGKTKRNELVMR--VQPGEAVYVKMMTKTPGMSFDMEETELDLT 567
+ + E V+ + P A+ +K+ K+ +F+ +L T
Sbjct: 359 GSEQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWT 402
>pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
Length = 485
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 83/126 (65%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
G+ R++IEKPFG D++ L N L F + Q++RI+HYLGKEMVQN+ +RFGN IF
Sbjct: 140 GYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRINHYLGKEMVQNIAALRFGNPIFD 199
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
WN++ I +V +T E G + R GY+D G + D++QNH +QI+ +AMEKP +
Sbjct: 200 AAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQIVGWLAMEKPESFTDK 259
Query: 121 DIRNEK 126
DIR K
Sbjct: 260 DIRAAK 265
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 466 YLDDKTVPPGSNTPTFASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIF 525
YL++ VP S TF + L+ RW+GVPF +R GK L ++ + I + + F
Sbjct: 300 YLEELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFN-F 358
Query: 526 EGKTKRNELVMR--VQPGEAVYVKMMTKTPGMSFDMEETELDLT 567
+ + E V+ + P A+ +K+ K+ +F+ +L T
Sbjct: 359 GSEQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWT 402
>pdb|2DPG|A Chain A, Complex Of Inactive Mutant (H240->n) Of Glucose
6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides
With Nadp+
Length = 485
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 83/126 (65%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
G+ R++IEKPFG D++ L N L F + Q++RIDHYLGKEMVQN+ +RFGN IF
Sbjct: 140 GYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNIAALRFGNPIFD 199
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
WN++ I +V +T E G + R GY+D G + D++QN+ +QI+ +AMEKP +
Sbjct: 200 AAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNNTMQIVGWLAMEKPESFTDK 259
Query: 121 DIRNEK 126
DIR K
Sbjct: 260 DIRAAK 265
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 466 YLDDKTVPPGSNTPTFASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIF 525
YL++ VP S TF + L+ RW+GVPF +R GK L ++ + I + + F
Sbjct: 300 YLEELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFN-F 358
Query: 526 EGKTKRNELVMR--VQPGEAVYVKMMTKTPGMSFDMEETELDLT 567
+ + E V+ + P A+ +K+ K+ +F+ +L T
Sbjct: 359 GSEQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWT 402
>pdb|1Q5D|A Chain A, Epothilone B-Bound Cytochrome P450epok
pdb|1Q5E|A Chain A, Substrate-Free Cytochrome P450epok
Length = 419
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 159 FGLPPSPYQAQRSIYVDDIVSGAVSISAA---KTLCNELSSLLGAEGF-VLRKWASSHP- 213
FGLPP + R + S A+ + A +T+ L + G E F V+R +A P
Sbjct: 96 FGLPPEDHARVRKLVNPSFTSRAIDLLRAEIQRTVDQLLDARSGQEEFDVVRDYAEGIPM 155
Query: 214 ---EVLSDLPVEDCEKPHMLGSNESIKVLGIRWCPKSD 248
L +P E EK GS + + LG+ P+ D
Sbjct: 156 RAISALLKVPAECDEKFRRFGSA-TARALGVGLVPRVD 192
>pdb|1PKF|A Chain A, Crystal Structure Of Epothilone D-Bound Cytochrome
P450epok
Length = 419
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 159 FGLPPSPYQAQRSIYVDDIVSGAVSISAA---KTLCNELSSLLGAEGF-VLRKWASSHP- 213
FGLPP + R + S A+ + A +T+ L + G E F V+R +A P
Sbjct: 96 FGLPPEDHARVRKLVNPSFTSRAIDLLRAEIQRTVDQLLDARSGQEEFDVVRDYAEGIPM 155
Query: 214 ---EVLSDLPVEDCEKPHMLGSNESIKVLGIRWCPKSD 248
L +P E EK GS + + LG+ P+ D
Sbjct: 156 RAISALLKVPAECDEKFRRFGSA-TARALGVGLVPRVD 192
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 423 LDLTYGSRYKVKVL-KCIPPLQLEDVVLGQYTGDP----NGEGDAKYGYL---DDKTVPP 474
LDL++ + +L + +P L + DV + T P G G+ + YL + KT+PP
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 475 GSNTPTFASAVLKIKNERWDGVP 497
G TPT L + N + +P
Sbjct: 142 GLLTPTPKLEKLSLANNQLTELP 164
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 423 LDLTYGSRYKVKVL-KCIPPLQLEDVVLGQYTGDP----NGEGDAKYGYL---DDKTVPP 474
LDL++ + +L + +P L + DV + T P G G+ + YL + KT+PP
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 475 GSNTPTFASAVLKIKNERWDGVP 497
G TPT L + N + +P
Sbjct: 142 GLLTPTPKLEKLSLANNQLTELP 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,529,716
Number of Sequences: 62578
Number of extensions: 735757
Number of successful extensions: 1469
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1448
Number of HSP's gapped (non-prelim): 31
length of query: 576
length of database: 14,973,337
effective HSP length: 104
effective length of query: 472
effective length of database: 8,465,225
effective search space: 3995586200
effective search space used: 3995586200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)