Query psy17439
Match_columns 576
No_of_seqs 330 out of 1813
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 22:29:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02333 glucose-6-phosphate 1 100.0 2.9E-76 6.3E-81 644.0 19.6 266 1-573 253-524 (604)
2 PLN02640 glucose-6-phosphate 1 100.0 2.7E-75 5.9E-80 634.3 19.4 266 1-573 224-495 (573)
3 COG0364 Zwf Glucose-6-phosphat 100.0 3.3E-75 7.1E-80 616.4 18.3 263 3-572 139-409 (483)
4 PTZ00309 glucose-6-phosphate 1 100.0 1.2E-74 2.5E-79 630.0 19.7 264 1-573 193-457 (542)
5 PRK05722 glucose-6-phosphate 1 100.0 1.8E-74 4E-79 627.6 20.1 266 1-573 147-419 (495)
6 TIGR00871 zwf glucose-6-phosph 100.0 4.6E-74 1E-78 622.7 20.1 266 1-573 138-405 (482)
7 PLN02539 glucose-6-phosphate 1 100.0 2E-73 4.4E-78 615.8 18.9 256 1-573 157-413 (491)
8 PRK12853 glucose-6-phosphate 1 100.0 3.9E-73 8.6E-78 613.9 19.7 263 1-570 137-403 (482)
9 PRK12854 glucose-6-phosphate 1 100.0 9E-73 1.9E-77 609.8 18.7 253 2-571 146-402 (484)
10 KOG0563|consensus 100.0 6.9E-71 1.5E-75 574.5 17.5 266 1-575 154-421 (499)
11 PF02781 G6PD_C: Glucose-6-pho 100.0 4.5E-52 9.7E-57 425.5 8.6 141 433-574 78-218 (293)
12 cd01644 RT_pepA17 RT_pepA17: R 100.0 6E-38 1.3E-42 310.0 11.2 185 58-248 2-213 (213)
13 PF05380 Peptidase_A17: Pao re 100.0 9.8E-31 2.1E-35 247.6 9.2 115 263-378 1-115 (159)
14 COG0364 Zwf Glucose-6-phosphat 99.9 2.7E-23 5.8E-28 221.5 5.9 132 362-495 336-482 (483)
15 PLN02333 glucose-6-phosphate 1 99.9 1.2E-22 2.7E-27 223.2 6.5 134 362-496 448-600 (604)
16 PF02781 G6PD_C: Glucose-6-pho 99.9 3.8E-23 8.3E-28 212.4 1.3 274 50-494 1-292 (293)
17 PLN02640 glucose-6-phosphate 1 99.9 2.5E-22 5.5E-27 220.0 6.4 133 362-495 419-570 (573)
18 PRK05722 glucose-6-phosphate 1 99.8 7.2E-22 1.6E-26 216.0 6.9 133 362-495 346-494 (495)
19 TIGR00871 zwf glucose-6-phosph 99.8 1.1E-21 2.3E-26 214.0 6.2 133 362-495 335-481 (482)
20 PRK12854 glucose-6-phosphate 1 99.8 2.9E-21 6.3E-26 209.8 7.2 127 362-489 330-470 (484)
21 PTZ00309 glucose-6-phosphate 1 99.8 3.3E-21 7.2E-26 211.3 6.9 129 362-491 386-528 (542)
22 KOG0563|consensus 99.8 1.3E-20 2.9E-25 198.2 6.5 135 360-495 345-498 (499)
23 PLN02539 glucose-6-phosphate 1 99.8 1.1E-20 2.4E-25 205.6 6.2 132 362-494 342-488 (491)
24 PRK12853 glucose-6-phosphate 1 99.8 1.9E-20 4.2E-25 203.8 7.2 131 362-495 334-479 (482)
25 cd03715 RT_ZFREV_like RT_ZFREV 99.2 1E-10 2.3E-15 115.4 10.0 165 8-205 4-191 (210)
26 cd01645 RT_Rtv RT_Rtv: Reverse 98.9 5.5E-09 1.2E-13 103.6 8.5 166 9-206 5-196 (213)
27 cd01647 RT_LTR RT_LTR: Reverse 98.9 7.1E-09 1.5E-13 96.9 8.4 133 57-205 9-158 (177)
28 cd03714 RT_DIRS1 RT_DIRS1: Rev 98.6 1.2E-07 2.5E-12 85.3 7.1 79 121-205 2-99 (119)
29 cd00304 RT_like RT_like: Rever 97.4 0.00018 4E-09 61.6 4.4 53 157-210 12-82 (98)
30 PF00078 RVT_1: Reverse transc 97.2 0.00044 9.5E-09 66.9 5.6 91 115-205 64-193 (214)
31 cd03487 RT_Bac_retron_II RT_Ba 95.5 0.027 5.8E-07 55.8 6.1 74 156-246 103-198 (214)
32 cd01648 TERT TERT: Telomerase 94.9 0.033 7.2E-07 50.1 4.5 50 156-205 19-91 (119)
33 cd01646 RT_Bac_retron_I RT_Bac 93.7 0.067 1.5E-06 50.3 3.8 53 153-205 50-120 (158)
34 cd01651 RT_G2_intron RT_G2_int 91.6 0.22 4.7E-06 48.8 4.4 51 155-205 125-204 (226)
35 cd01650 RT_nLTR_like RT_nLTR: 89.3 0.53 1.1E-05 46.0 4.8 50 156-205 106-180 (220)
36 PF14251 DUF4346: Domain of un 65.2 5.5 0.00012 35.9 2.6 40 16-55 72-113 (119)
37 PF07727 RVT_2: Reverse transc 59.0 3.5 7.6E-05 42.0 0.3 49 149-197 112-192 (246)
38 cd01709 RT_like_1 RT_like_1: A 33.1 45 0.00098 35.7 3.7 53 153-206 80-150 (346)
39 PF00075 RNase_H: RNase H; In 31.2 30 0.00066 30.6 1.8 18 344-361 3-26 (132)
40 KOG1005|consensus 27.1 37 0.0008 40.2 1.9 59 151-209 629-710 (888)
41 COG0673 MviM Predicted dehydro 26.3 59 0.0013 33.8 3.2 24 4-27 93-116 (342)
42 PRK11579 putative oxidoreducta 26.1 59 0.0013 34.4 3.2 24 4-27 90-113 (346)
43 PRK10206 putative oxidoreducta 24.6 64 0.0014 34.3 3.1 24 4-27 90-113 (344)
44 COG5649 Uncharacterized conser 22.4 1.4E+02 0.0031 26.9 4.2 51 489-542 49-110 (132)
45 PRK14634 hypothetical protein; 22.1 95 0.0021 29.4 3.4 37 3-40 38-76 (155)
No 1
>PLN02333 glucose-6-phosphate 1-dehydrogenase
Probab=100.00 E-value=2.9e-76 Score=643.97 Aligned_cols=266 Identities=56% Similarity=1.024 Sum_probs=251.3
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccCCCCcCeEEEEEeCccc
Q psy17439 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFG 80 (576)
Q Consensus 1 ~~~r~~~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n~~~~~kvriv~d~s~~ 80 (576)
||+|||||||||+|++||++||+.|+++|+|+||||||||||||+||||++|||+|.+|+|+||++||++|+|+++|+.+
T Consensus 253 gw~RIVvEKPFG~Dl~SA~~Ln~~L~~~f~E~QIyRIDHYLGKE~VQNll~lRFaN~ifeplWNr~~I~~VqIt~~E~~G 332 (604)
T PLN02333 253 GWTRVIVEKPFGRDSESSAALTKSLKQYLEEDQIFRIDHYLGKELVENLSVLRFSNLIFEPLWSRQYIRNVQFIFSEDFG 332 (604)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHhhCCHHHccccCccccHHHHHHHHHHHHhhHhhhhhhccccceeEEEEEecCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCcccchhhHHHHHHHHHHhccCCcccCHHHHhhcccCCCCCCccceEEEeccCCCCCceEEEEeeeccC
Q psy17439 81 TQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRNEKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFG 160 (576)
Q Consensus 81 ~~~rg~sln~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG 160 (576)
++|||.||+.+|+++|++||||+|||+.++|++|..+.++||+.++
T Consensus 333 vEgRggYYD~~GaiRDmvQNHLLQlLaLvAME~P~s~~aedIRdEK---------------------------------- 378 (604)
T PLN02333 333 TEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEK---------------------------------- 378 (604)
T ss_pred cChhhhhhhccchHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHH----------------------------------
Confidence 9999999999999999999999999999999999988888886444
Q ss_pred CCCCHHhhhcccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCCCCcccCCCCcCCCCccceEee
Q psy17439 161 LPPSPYQAQRSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDCEKPHMLGSNESIKVLG 240 (576)
Q Consensus 161 ~~~SP~ll~~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i~~~d~~~~~~~~~~~~~K~LG 240 (576)
T Consensus 379 -------------------------------------------------------------------------------- 378 (604)
T PLN02333 379 -------------------------------------------------------------------------------- 378 (604)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCceeeeeeeccCCCCCchHHHHHhhhhcccccCccchhhhHHHHHHHHHhhhcCCCCCCCCChhHHHHHHHHH
Q psy17439 241 IRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIASIDDVNGFLSPVTVYMKMFMQQVWLIKDVSWDSPLPGTLQRKWNRLI 320 (576)
Q Consensus 241 ~~w~~~~D~l~~~~~~~~~~~~~TKR~~ls~va~~yDPlGl~~p~~~~~K~~lq~l~~~~~~~Wd~~l~~e~~~~w~~~~ 320 (576)
T Consensus 379 -------------------------------------------------------------------------------- 378 (604)
T PLN02333 379 -------------------------------------------------------------------------------- 378 (604)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcccceeeeeeeecCCCCcceEEEeecccccceeEEEEeeeccCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCC
Q psy17439 321 SEIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGAAYAAVVYLSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPG 400 (576)
Q Consensus 321 ~~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~ayga~~Ylk~l~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~ 400 (576)
T Consensus 379 -------------------------------------------------------------------------------- 378 (604)
T PLN02333 379 -------------------------------------------------------------------------------- 378 (604)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEEeeCCCCCCceeeeeeeccccccccccccccccCCcccceecccccCCCCCCCcccccccCCCCCCCCCCChh
Q psy17439 401 EAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPT 480 (576)
Q Consensus 401 e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~aye~L~~~d~V~Gqy~~~~~deve~~W~yvde~~y~agS~gpT 480 (576)
++||++++++..+++|+|||..+.. .++.+.||+|+++|+++|.|||
T Consensus 379 --------------------------------vKVLrsirpi~~~~vVrGQY~~g~~-~g~~~~GY~de~~V~~dS~TeT 425 (604)
T PLN02333 379 --------------------------------VKVLRSMRPIQLEDVVIGQYKSHTK-GGVTYPAYTDDKTVPKGSLTPT 425 (604)
T ss_pred --------------------------------HHHHhccCCCCccceEEecccCCCc-CCccCCCcccCCCCCCCCCCcc
Confidence 5567888888888999999987754 4678899999999999999999
Q ss_pred HHHHHhhhcCCccccCceeeecCccCCccccEEEEEecCCCCcCCCCC------CCCCEEEEEecCCCcEEEEeeecCCC
Q psy17439 481 FASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGK------TKRNELVMRVQPGEAVYVKMMTKTPG 554 (576)
Q Consensus 481 ~aa~~l~idn~rW~GVPf~lrtGK~l~~~~~~I~i~fk~~~~~~f~~~------~~~n~Lv~~i~P~~~i~l~~~~k~pg 554 (576)
||+++++||||||+||||||||||+|++|.+||+|+||++|+.+|.+. ..+|+|||+|||+|+|+|++|+|.||
T Consensus 426 FaA~~l~IDN~RW~GVPF~LRtGK~L~~r~tEI~I~FK~vp~~lf~~~~~~~~~~~~N~LViriQP~e~I~l~~~~K~PG 505 (604)
T PLN02333 426 FAAAALFIDNARWDGVPFLMKAGKALHTKSAEIRVQFRHVPGNLYNRNFGTDLDQATNELVIRVQPDEAIYLKINNKVPG 505 (604)
T ss_pred eeeEEEEEcCcccCCCCEEEEccCCCCcCceEEEEEecCCChhhcccccccccCCCCCEEEEEECCCCeEEEEEecCCCC
Confidence 999999999999999999999999999999999999999999999531 25899999999999999999999999
Q ss_pred CCCceeEEEEeeecccccC
Q psy17439 555 MSFDMEETELDLTYGSRYK 573 (576)
Q Consensus 555 ~~~~~~~~~l~~~~~~~~~ 573 (576)
.++++++++|+++|.+.|+
T Consensus 506 ~~~~l~~~~L~~~y~~~~~ 524 (604)
T PLN02333 506 LGMRLDRSNLNLLYAARYS 524 (604)
T ss_pred CCCceeEEEEEeechhhcC
Confidence 9999999999999998775
No 2
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=100.00 E-value=2.7e-75 Score=634.28 Aligned_cols=266 Identities=56% Similarity=1.030 Sum_probs=250.1
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccCCCCcCeEEEEEeCccc
Q psy17439 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFG 80 (576)
Q Consensus 1 ~~~r~~~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n~~~~~kvriv~d~s~~ 80 (576)
||+|||||||||+|++||++||+.|+++|+|+||||||||||||+||||++|||+|.+|+|+||++||++|+|++.|+.+
T Consensus 224 g~~RIVvEKPFG~DL~SA~~Ln~~L~~~f~EeQIyRIDHYLGKE~VQNil~lRFaN~ifeplWNr~~Id~VqIt~~E~~G 303 (573)
T PLN02640 224 GWTRVIVEKPFGRDSESSGELTRCLKQYLTEEQIFRIDHYLGKELVENLSVLRFSNLVFEPLWSRNYIRNVQLIFSEDFG 303 (573)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhCCHHHccCcCccccHHHHHHHHHHHHhhhhhhhhhcccccceEEEEEecCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCcccchhhHHHHHHHHHHhccCCcccCHHHHhhcccCCCCCCccceEEEeccCCCCCceEEEEeeeccC
Q psy17439 81 TQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRNEKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFG 160 (576)
Q Consensus 81 ~~~rg~sln~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG 160 (576)
++|||.|||.+|+++||+||||+|+|+..+|+.|..+.++||+.++
T Consensus 304 VegR~~YYD~~GalRDMvQNHLlQlLaLvAMEpP~~~~a~~IRdEK---------------------------------- 349 (573)
T PLN02640 304 TEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEK---------------------------------- 349 (573)
T ss_pred cChhhhhhhccchHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHH----------------------------------
Confidence 9999999999999999999999999999999999988888886444
Q ss_pred CCCCHHhhhcccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCCCCcccCCCCcCCCCccceEee
Q psy17439 161 LPPSPYQAQRSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDCEKPHMLGSNESIKVLG 240 (576)
Q Consensus 161 ~~~SP~ll~~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i~~~d~~~~~~~~~~~~~K~LG 240 (576)
T Consensus 350 -------------------------------------------------------------------------------- 349 (573)
T PLN02640 350 -------------------------------------------------------------------------------- 349 (573)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCceeeeeeeccCCCCCchHHHHHhhhhcccccCccchhhhHHHHHHHHHhhhcCCCCCCCCChhHHHHHHHHH
Q psy17439 241 IRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIASIDDVNGFLSPVTVYMKMFMQQVWLIKDVSWDSPLPGTLQRKWNRLI 320 (576)
Q Consensus 241 ~~w~~~~D~l~~~~~~~~~~~~~TKR~~ls~va~~yDPlGl~~p~~~~~K~~lq~l~~~~~~~Wd~~l~~e~~~~w~~~~ 320 (576)
T Consensus 350 -------------------------------------------------------------------------------- 349 (573)
T PLN02640 350 -------------------------------------------------------------------------------- 349 (573)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcccceeeeeeeecCCCCcceEEEeecccccceeEEEEeeeccCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCC
Q psy17439 321 SEIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGAAYAAVVYLSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPG 400 (576)
Q Consensus 321 ~~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~ayga~~Ylk~l~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~ 400 (576)
T Consensus 350 -------------------------------------------------------------------------------- 349 (573)
T PLN02640 350 -------------------------------------------------------------------------------- 349 (573)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEEeeCCCCCCceeeeeeeccccccccccccccccCCcccceecccccCCCCCCCcccccccCCCCCCCCCCChh
Q psy17439 401 EAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPT 480 (576)
Q Consensus 401 e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~aye~L~~~d~V~Gqy~~~~~deve~~W~yvde~~y~agS~gpT 480 (576)
++||++++++...++|+|||+.+.. .++.+.||+++++|+++|.|||
T Consensus 350 --------------------------------vkVLrairp~~~~~~VrGQY~~g~~-~g~~v~gY~eE~gV~~dS~TET 396 (573)
T PLN02640 350 --------------------------------VKVLRSMKPLQLEDVIVGQYKGHSK-GGKSYPAYTDDPTVPKHSLTPT 396 (573)
T ss_pred --------------------------------HHHHhccCCCChhceEEecccCCCC-CCCcCCCcccCCCCCCCCCCcc
Confidence 5567788887778999999987754 5667889999999999999999
Q ss_pred HHHHHhhhcCCccccCceeeecCccCCccccEEEEEecCCCCcCCCC------CCCCCEEEEEecCCCcEEEEeeecCCC
Q psy17439 481 FASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEG------KTKRNELVMRVQPGEAVYVKMMTKTPG 554 (576)
Q Consensus 481 ~aa~~l~idn~rW~GVPf~lrtGK~l~~~~~~I~i~fk~~~~~~f~~------~~~~n~Lv~~i~P~~~i~l~~~~k~pg 554 (576)
||+.+++||||||+||||||||||+|++|.+||+|+||++|+.+|.+ .+.+|+|||+|||+|+|.|++++|.||
T Consensus 397 FaA~kl~IDN~RW~GVPFyLRTGKrL~~r~teI~I~FK~~p~~lF~~~~~~~~~~~~N~LviriqP~e~I~l~~~~K~PG 476 (573)
T PLN02640 397 FAAAALFINNARWDGVPFLMKAGKALHTRRAEIRVQFRHVPGNLYKRNFGTDLDKATNELVLRVQPDEAIYLKINNKVPG 476 (573)
T ss_pred eeEEEEEEcCcccCCCCEEEEccCCCCcCeeEEEEEeccCChhhcccccccccCCCCCEEEEEECCCCcEEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999952 135899999999999999999999999
Q ss_pred CCCceeEEEEeeecccccC
Q psy17439 555 MSFDMEETELDLTYGSRYK 573 (576)
Q Consensus 555 ~~~~~~~~~l~~~~~~~~~ 573 (576)
.++.+++++|+++|.+.|+
T Consensus 477 ~~~~l~~~~L~~~~~~~~~ 495 (573)
T PLN02640 477 LGMRLDRSDLNLLYRARYP 495 (573)
T ss_pred CCCceEEEeeeeechhhcC
Confidence 9999999999999987765
No 3
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-75 Score=616.43 Aligned_cols=263 Identities=50% Similarity=0.888 Sum_probs=244.3
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccCCCCcCeEEEEEeCccccC
Q psy17439 3 TRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGTQ 82 (576)
Q Consensus 3 ~r~~~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n~~~~~kvriv~d~s~~~~ 82 (576)
+|||||||||+||+||++||+.|+.+|+|+||||||||||||+||||+++||||.+|+|+||++||++|+|++.|+.|++
T Consensus 139 ~RlviEKPfG~dL~SA~~Ln~~i~~~F~E~qIyRIDHYLGKetVQNllalRFaN~~fE~lWNr~~Id~VqIt~aE~~GvE 218 (483)
T COG0364 139 GRLVIEKPFGHDLASARELNDQISAVFKEEQIYRIDHYLGKETVQNLLALRFANAIFEPLWNRNYIDHVQITVAETLGVE 218 (483)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHhCChhheEeeccccCHHHHHHHHHHHHhhhhhhhhhccccceeEEEEEeeecccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCcccchhhHHHHHHHHHHhccCCcccCHHHHhhcccCCCCCCccceEEEeccCCCCCceEEEEeeeccCCC
Q psy17439 83 GRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRNEKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFGLP 162 (576)
Q Consensus 83 ~rg~sln~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG~~ 162 (576)
|||.||+..++.|||+||||+|+|++.+|+.|..+.+++|++++
T Consensus 219 gRggYYD~~GalRDMvQNHlLQlL~LvAME~P~~~~ad~irdEK------------------------------------ 262 (483)
T COG0364 219 GRGGYYDKAGALRDMVQNHLLQLLCLVAMEPPASFSADDIRDEK------------------------------------ 262 (483)
T ss_pred ccccchhccchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH------------------------------------
Confidence 99999999999999999999999999999999999888887555
Q ss_pred CCHHhhhcccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCCCCcccCCCCcCCCCccceEeeee
Q psy17439 163 PSPYQAQRSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDCEKPHMLGSNESIKVLGIR 242 (576)
Q Consensus 163 ~SP~ll~~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i~~~d~~~~~~~~~~~~~K~LG~~ 242 (576)
T Consensus 263 -------------------------------------------------------------------------------- 262 (483)
T COG0364 263 -------------------------------------------------------------------------------- 262 (483)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCceeeeeeeccCCCCCchHHHHHhhhhcccccCccchhhhHHHHHHHHHhhhcCCCCCCCCChhHHHHHHHHHHH
Q psy17439 243 WCPKSDSFFNSVSVELDSPTTTKRQVLSLIASIDDVNGFLSPVTVYMKMFMQQVWLIKDVSWDSPLPGTLQRKWNRLISE 322 (576)
Q Consensus 243 w~~~~D~l~~~~~~~~~~~~~TKR~~ls~va~~yDPlGl~~p~~~~~K~~lq~l~~~~~~~Wd~~l~~e~~~~w~~~~~~ 322 (576)
T Consensus 263 -------------------------------------------------------------------------------- 262 (483)
T COG0364 263 -------------------------------------------------------------------------------- 262 (483)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcccceeeeeeeecCCCCcceEEEeecccccceeEEEEeeeccCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCCCe
Q psy17439 323 IHQLSEIKIPRFVLCSDYLSLDLIGFGDASGAAYAAVVYLSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEA 402 (576)
Q Consensus 323 l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~ayga~~Ylk~l~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~e~ 402 (576)
T Consensus 263 -------------------------------------------------------------------------------- 262 (483)
T COG0364 263 -------------------------------------------------------------------------------- 262 (483)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEEeeCCCCCCceeeeeeeccccccccccccccccCCc----ccceecccccCCCCCCCcccccccCCCCCCCCCCC
Q psy17439 403 VYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIPPLQ----LEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNT 478 (576)
Q Consensus 403 I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~aye~L~----~~d~V~Gqy~~~~~deve~~W~yvde~~y~agS~g 478 (576)
+++|+|+++++ .+++|||||+.+.. .+..+.||++|++++++|.|
T Consensus 263 ------------------------------vKvLkal~p~~~~~~~~~~VrGQY~ag~~-~g~~v~gY~eE~gv~~dS~t 311 (483)
T COG0364 263 ------------------------------VKVLKALRPISEENVKEDTVRGQYTAGEI-DGKKVPGYLEEEGVAKDSNT 311 (483)
T ss_pred ------------------------------HHHHHhcCCCChhhhhhceeecceecccc-CCcccCccccCCCCCCCCCc
Confidence 33444555543 36789999998755 56678999999999999999
Q ss_pred hhHHHHHhhhcCCccccCceeeecCccCCccccEEEEEecCCCCcCCCCC----CCCCEEEEEecCCCcEEEEeeecCCC
Q psy17439 479 PTFASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGK----TKRNELVMRVQPGEAVYVKMMTKTPG 554 (576)
Q Consensus 479 pT~aa~~l~idn~rW~GVPf~lrtGK~l~~~~~~I~i~fk~~~~~~f~~~----~~~n~Lv~~i~P~~~i~l~~~~k~pg 554 (576)
|||||.+++||||||+||||||||||||++|.|||+|+||++|+++|... +.+|.|||||||+|+|+|++++|.||
T Consensus 312 ETFvA~k~~IdnwRW~GVPFylRtGKrl~~k~teI~i~FK~~p~~lF~~~~~~~~~~N~LviriQPdegI~l~~~~K~PG 391 (483)
T COG0364 312 ETFVAIKLEIDNWRWAGVPFYLRTGKRLPKKVTEIVIHFKRVPHNLFSDPSRSSLEQNRLVIRIQPDEGISLKFNVKVPG 391 (483)
T ss_pred ceeEEEEEEecCCccCCCCEEEEcCCCCCCCeeEEEEEECCCChhhcCCcccCcccCcEEEEEECCCCceEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999742 25899999999999999999999999
Q ss_pred CCCceeEEEEeeeccccc
Q psy17439 555 MSFDMEETELDLTYGSRY 572 (576)
Q Consensus 555 ~~~~~~~~~l~~~~~~~~ 572 (576)
.++...+++|++.|...+
T Consensus 392 ~~~~~~~l~l~f~~~~~~ 409 (483)
T COG0364 392 LGLQTRPLDLDFSYDSKF 409 (483)
T ss_pred Cccccceeeeeccccccc
Confidence 999999999999998774
No 4
>PTZ00309 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-74 Score=629.95 Aligned_cols=264 Identities=64% Similarity=1.088 Sum_probs=248.3
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccCCCCcCeEEEEEeCccc
Q psy17439 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFG 80 (576)
Q Consensus 1 ~~~r~~~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n~~~~~kvriv~d~s~~ 80 (576)
||+|||||||||+|++||++||+.|+++|+|+||||||||||||+||||++|||+|++|+|+||++||++|+|++.|+.+
T Consensus 193 G~~RiViEKPFG~Dl~SA~~Ln~~l~~~f~E~qIyRIDHYLGKE~VQNil~lRFaN~ifeplWNr~~I~~VqIt~~E~~G 272 (542)
T PTZ00309 193 GWVRVIVEKPFGRDLESSEELSNQLEPLFDESQLYRIDHYLGKEMVQNLIVLRFANRVFEPLWNRNNIACVQITFKEDIG 272 (542)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhCCHhHccccCccccHHHHHHHHHHHHhhHhhhhhhcccccceeEEEEecCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCcccchhhHHHHHHHHHHhccCCcccCHHHHhhcccCCCCCCccceEEEeccCCCCCceEEEEeeeccC
Q psy17439 81 TQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRNEKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFG 160 (576)
Q Consensus 81 ~~~rg~sln~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG 160 (576)
++|||.||+.+|+++||+||||+|+|+.++|++|..+.++||+.++
T Consensus 273 vegRg~yYD~~GalRDmvQNHLlQlLalvAMEpP~~~~a~~irdeK---------------------------------- 318 (542)
T PTZ00309 273 TEGRGGYFDSYGIIRDVMQNHLLQILALLAMEKPVSLSAEDIRDEK---------------------------------- 318 (542)
T ss_pred cChhhhhhhccchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH----------------------------------
Confidence 9999999999999999999999999999999999988888886554
Q ss_pred CCCCHHhhhcccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCCCCcccCCCCcCCCCccceEee
Q psy17439 161 LPPSPYQAQRSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDCEKPHMLGSNESIKVLG 240 (576)
Q Consensus 161 ~~~SP~ll~~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i~~~d~~~~~~~~~~~~~K~LG 240 (576)
T Consensus 319 -------------------------------------------------------------------------------- 318 (542)
T PTZ00309 319 -------------------------------------------------------------------------------- 318 (542)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCceeeeeeeccCCCCCchHHHHHhhhhcccccCccchhhhHHHHHHHHHhhhcCCCCCCCCChhHHHHHHHHH
Q psy17439 241 IRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIASIDDVNGFLSPVTVYMKMFMQQVWLIKDVSWDSPLPGTLQRKWNRLI 320 (576)
Q Consensus 241 ~~w~~~~D~l~~~~~~~~~~~~~TKR~~ls~va~~yDPlGl~~p~~~~~K~~lq~l~~~~~~~Wd~~l~~e~~~~w~~~~ 320 (576)
T Consensus 319 -------------------------------------------------------------------------------- 318 (542)
T PTZ00309 319 -------------------------------------------------------------------------------- 318 (542)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcccceeeeeeeecCCCCcceEEEeecccccceeEEEEeeeccCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCC
Q psy17439 321 SEIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGAAYAAVVYLSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPG 400 (576)
Q Consensus 321 ~~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~ayga~~Ylk~l~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~ 400 (576)
T Consensus 319 -------------------------------------------------------------------------------- 318 (542)
T PTZ00309 319 -------------------------------------------------------------------------------- 318 (542)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEEeeCCCCCCceeeeeeeccccccccccccccccCCcccceecccccCCCCCCCcccccccCCCCCCCCCCChh
Q psy17439 401 EAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPT 480 (576)
Q Consensus 401 e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~aye~L~~~d~V~Gqy~~~~~deve~~W~yvde~~y~agS~gpT 480 (576)
+++|++++++...++|+|||+++. + ..+.+|+++++|+++|.|||
T Consensus 319 --------------------------------vkVLrslrpi~~~~~VrGQY~~~~--~-~~v~gY~~e~gV~~dS~TeT 363 (542)
T PTZ00309 319 --------------------------------VKVLKCIEPIKMEECVLGQYTASA--D-GSIPGYLEDEGVPKDSTTPT 363 (542)
T ss_pred --------------------------------HHHHhCcCCCCccceEEecccCCC--C-CCCCCcccCCCCCCCCCccc
Confidence 556777888777899999996554 2 27889999999999999999
Q ss_pred HHHHHhhhcCCccccCceeeecCccCCccccEEEEEecCCCCcCCCC-CCCCCEEEEEecCCCcEEEEeeecCCCCCCce
Q psy17439 481 FASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEG-KTKRNELVMRVQPGEAVYVKMMTKTPGMSFDM 559 (576)
Q Consensus 481 ~aa~~l~idn~rW~GVPf~lrtGK~l~~~~~~I~i~fk~~~~~~f~~-~~~~n~Lv~~i~P~~~i~l~~~~k~pg~~~~~ 559 (576)
||+.+++||||||+||||||||||+|++|.+||+|+||++|+.+|.+ .+.+|+|||+|||+|+|.|++++|.||.++.+
T Consensus 364 FaA~kl~IdN~RW~GVPFylRtGK~L~~r~teI~I~FK~~p~~~f~~~~~~~N~Lvi~iqP~e~i~l~~~~K~PG~~~~l 443 (542)
T PTZ00309 364 FAAAVLHINNDRWEGVPFILEAGKALEERYVEIRIQFKGVDEFRPSGDDTQRNELVIRAQPSEAMYLKITAKVPGLSNDL 443 (542)
T ss_pred eeEEEEEecCcccCCceEEEEeccCcCCCeeEEEEEEecCChhhccCCCCCCCEEEEEECCCCeEEEEEeccCCCCCCce
Confidence 99999999999999999999999999999999999999999999953 35699999999999999999999999999999
Q ss_pred eEEEEeeecccccC
Q psy17439 560 EETELDLTYGSRYK 573 (576)
Q Consensus 560 ~~~~l~~~~~~~~~ 573 (576)
++++|+++|.+.|+
T Consensus 444 ~~~~l~~~~~~~~~ 457 (542)
T PTZ00309 444 HQTELDLTYKTRYN 457 (542)
T ss_pred eEeeEEEEchhccC
Confidence 99999999988774
No 5
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=100.00 E-value=1.8e-74 Score=627.61 Aligned_cols=266 Identities=48% Similarity=0.874 Sum_probs=247.6
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccCCCCcCeEEEEEeCccc
Q psy17439 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFG 80 (576)
Q Consensus 1 ~~~r~~~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n~~~~~kvriv~d~s~~ 80 (576)
||+|||||||||+|++||++||+.|+++|+|+||||||||||||+||||++|||+|.+|+|+||++||++|+|+++|+.+
T Consensus 147 g~~RIVIEKPFG~DL~SA~~Ln~~l~~~f~E~qIyRIDHyLGKe~VqNil~lRFaN~~feplWNr~~I~~VqIt~~E~~G 226 (495)
T PRK05722 147 GWRRVVIEKPFGHDLASARELNDQVGEVFKEEQIYRIDHYLGKETVQNLLALRFANALFEPLWNRNYIDHVQITVAETVG 226 (495)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcCCHhHeeccCccccHHHHHHHHHHHHhhHhhHhhhcccccceeEEEEecCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCcccchhhHHHHHHHHHHhccCCcccCHHHHhhcccCCCCCCccceEEEeccCCCCCceEEEEeeeccC
Q psy17439 81 TQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRNEKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFG 160 (576)
Q Consensus 81 ~~~rg~sln~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG 160 (576)
++|||.||+.+|+++||+||||+|+|+.++|++|..+.++||+.++
T Consensus 227 vegR~~yYd~~GalRDmvQNHLlQlLalvAME~P~~~~~~~ir~eK---------------------------------- 272 (495)
T PRK05722 227 VEGRGGYYDKSGALRDMVQNHLLQLLALVAMEPPASLDADSIRDEK---------------------------------- 272 (495)
T ss_pred cChhhhhhhccchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH----------------------------------
Confidence 9999999999999999999999999999999999988888886554
Q ss_pred CCCCHHhhhcccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCCCCcccCCCCcCCCCccceEee
Q psy17439 161 LPPSPYQAQRSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDCEKPHMLGSNESIKVLG 240 (576)
Q Consensus 161 ~~~SP~ll~~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i~~~d~~~~~~~~~~~~~K~LG 240 (576)
T Consensus 273 -------------------------------------------------------------------------------- 272 (495)
T PRK05722 273 -------------------------------------------------------------------------------- 272 (495)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCceeeeeeeccCCCCCchHHHHHhhhhcccccCccchhhhHHHHHHHHHhhhcCCCCCCCCChhHHHHHHHHH
Q psy17439 241 IRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIASIDDVNGFLSPVTVYMKMFMQQVWLIKDVSWDSPLPGTLQRKWNRLI 320 (576)
Q Consensus 241 ~~w~~~~D~l~~~~~~~~~~~~~TKR~~ls~va~~yDPlGl~~p~~~~~K~~lq~l~~~~~~~Wd~~l~~e~~~~w~~~~ 320 (576)
T Consensus 273 -------------------------------------------------------------------------------- 272 (495)
T PRK05722 273 -------------------------------------------------------------------------------- 272 (495)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcccceeeeeeeecCCCCcceEEEeecccccceeEEEEeeeccCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCC
Q psy17439 321 SEIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGAAYAAVVYLSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPG 400 (576)
Q Consensus 321 ~~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~ayga~~Ylk~l~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~ 400 (576)
T Consensus 273 -------------------------------------------------------------------------------- 272 (495)
T PRK05722 273 -------------------------------------------------------------------------------- 272 (495)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEEeeCCCCCCceeeeeeeccccccccccccccccCCcccc----eecccccCCCCCCCcccccccCCCCCCCCC
Q psy17439 401 EAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIPPLQLED----VVLGQYTGDPNGEGDAKYGYLDDKTVPPGS 476 (576)
Q Consensus 401 e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~aye~L~~~d----~V~Gqy~~~~~deve~~W~yvde~~y~agS 476 (576)
+++|+|++++..++ +|+|||+.+.. .++.+.+|+++++|+++|
T Consensus 273 --------------------------------~kvL~sir~~~~~~~~~~~VrGQY~~g~~-~g~~~~gY~~e~~V~~~S 319 (495)
T PRK05722 273 --------------------------------VKVLRALRPITPEDVKENTVRGQYTAGWI-GGKPVPGYREEEGVNPDS 319 (495)
T ss_pred --------------------------------HHHHhcCCCCChhhhhcceeeccccCCCC-CCCCCCCccCCCCCCCCC
Confidence 34555666655544 89999987654 566788999999999999
Q ss_pred CChhHHHHHhhhcCCccccCceeeecCccCCccccEEEEEecCCCCcCCCC---CCCCCEEEEEecCCCcEEEEeeecCC
Q psy17439 477 NTPTFASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEG---KTKRNELVMRVQPGEAVYVKMMTKTP 553 (576)
Q Consensus 477 ~gpT~aa~~l~idn~rW~GVPf~lrtGK~l~~~~~~I~i~fk~~~~~~f~~---~~~~n~Lv~~i~P~~~i~l~~~~k~p 553 (576)
.|||||+.+++||||||+||||||||||+|++|.+||+|+||++|+.+|.. .+.+|+|||+|||+|+|+|++|+|.|
T Consensus 320 ~TeTfaa~kl~Idn~RW~GVPF~lrtGK~L~~~~teI~i~Fk~~p~~~f~~~~~~~~~N~Lvi~iqP~e~i~l~~~~K~p 399 (495)
T PRK05722 320 TTETFVALKLEIDNWRWAGVPFYLRTGKRLPKKVTEIVIVFKPPPHNLFEESAEELGPNKLVIRIQPDEGISLRFNAKVP 399 (495)
T ss_pred CCcceeEEEEEEcCCccCCceEEEEecCCCCCceEEEEEEEeCCChhhccccccCCCCCEEEEEECCCCceEEEEEecCC
Confidence 999999999999999999999999999999999999999999999999964 24689999999999999999999999
Q ss_pred CCCCceeEEEEeeecccccC
Q psy17439 554 GMSFDMEETELDLTYGSRYK 573 (576)
Q Consensus 554 g~~~~~~~~~l~~~~~~~~~ 573 (576)
|.++.+++++|+++|.+.|+
T Consensus 400 G~~~~~~~~~l~~~~~~~~~ 419 (495)
T PRK05722 400 GEGMELRPVKLDFSYSEAFG 419 (495)
T ss_pred CCCCceEEEEEEeECccccC
Confidence 99999999999999988875
No 6
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=100.00 E-value=4.6e-74 Score=622.70 Aligned_cols=266 Identities=53% Similarity=0.941 Sum_probs=249.1
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccCCCCcCeEEEEEeCccc
Q psy17439 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFG 80 (576)
Q Consensus 1 ~~~r~~~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n~~~~~kvriv~d~s~~ 80 (576)
||+|||||||||+|++||++||+.|+++|+|+||||||||||||+||||++|||+|.+|+|+||++||++|+|+++|+.+
T Consensus 138 g~~RIVvEKPFG~DL~SA~~Ln~~l~~~f~E~qIyRIDHyLGKe~VqNil~lRFaN~~fe~lWNr~~I~~VqIt~~E~~G 217 (482)
T TIGR00871 138 GWSRVVVEKPFGHDLASAQELNKQLRAVFKEDQIYRIDHYLGKETVQNLLVLRFANQIFEPLWNRRYIDHVQITFAESFG 217 (482)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcCCHhHeeecccccchHHHHHHHHHHHhhHhhhhhhcccccceeEEEEecCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCcccchhhHHHHHHHHHHhccCCcccCHHHHhhcccCCCCCCccceEEEeccCCCCCceEEEEeeeccC
Q psy17439 81 TQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRNEKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFG 160 (576)
Q Consensus 81 ~~~rg~sln~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG 160 (576)
++|||.|||.+|+++||+||||+|+|+.++|+.|..+.++||+.++
T Consensus 218 vegR~~yyD~~GalRDmvQNHLlQlL~lvAMe~P~~~~a~~ir~eK---------------------------------- 263 (482)
T TIGR00871 218 VEGRGGYYDKSGALRDMVQNHLLQLLCLVAMEPPASFDADSIRDEK---------------------------------- 263 (482)
T ss_pred cChhhhhhhccchHHHHHHhHHHHHHHHHHcCCCCCCCHHHHHHHH----------------------------------
Confidence 9999999999999999999999999999999999988888886554
Q ss_pred CCCCHHhhhcccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCCCCcccCCCCcCCCCccceEee
Q psy17439 161 LPPSPYQAQRSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDCEKPHMLGSNESIKVLG 240 (576)
Q Consensus 161 ~~~SP~ll~~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i~~~d~~~~~~~~~~~~~K~LG 240 (576)
T Consensus 264 -------------------------------------------------------------------------------- 263 (482)
T TIGR00871 264 -------------------------------------------------------------------------------- 263 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCceeeeeeeccCCCCCchHHHHHhhhhcccccCccchhhhHHHHHHHHHhhhcCCCCCCCCChhHHHHHHHHH
Q psy17439 241 IRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIASIDDVNGFLSPVTVYMKMFMQQVWLIKDVSWDSPLPGTLQRKWNRLI 320 (576)
Q Consensus 241 ~~w~~~~D~l~~~~~~~~~~~~~TKR~~ls~va~~yDPlGl~~p~~~~~K~~lq~l~~~~~~~Wd~~l~~e~~~~w~~~~ 320 (576)
T Consensus 264 -------------------------------------------------------------------------------- 263 (482)
T TIGR00871 264 -------------------------------------------------------------------------------- 263 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcccceeeeeeeecCCCCcceEEEeecccccceeEEEEeeeccCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCC
Q psy17439 321 SEIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGAAYAAVVYLSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPG 400 (576)
Q Consensus 321 ~~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~ayga~~Ylk~l~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~ 400 (576)
T Consensus 264 -------------------------------------------------------------------------------- 263 (482)
T TIGR00871 264 -------------------------------------------------------------------------------- 263 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEEeeCCCCCCceeeeeeeccccccccccccccccCCccc--ceecccccCCCCCCCcccccccCCCCCCCCCCC
Q psy17439 401 EAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIPPLQLE--DVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNT 478 (576)
Q Consensus 401 e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~aye~L~~~--d~V~Gqy~~~~~deve~~W~yvde~~y~agS~g 478 (576)
++||+++++++.. ++|+|||+.+.. .++.+.+|+|+++|+++|.|
T Consensus 264 --------------------------------~kVL~~~r~~~~~~~~~vrGQY~~g~~-~g~~~~gY~~e~~V~~~S~T 310 (482)
T TIGR00871 264 --------------------------------VKVLKALRPIDPDDNNVVRGQYGAGEI-GGVSVPGYLEEEGVDKDSTT 310 (482)
T ss_pred --------------------------------HHHHhcCCCCCcccCceEeccccCCCC-CCcCCCCccCCCCCCCCCCC
Confidence 4456666666554 899999987653 45678899999999999999
Q ss_pred hhHHHHHhhhcCCccccCceeeecCccCCccccEEEEEecCCCCcCCCCCCCCCEEEEEecCCCcEEEEeeecCCCCCCc
Q psy17439 479 PTFASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTKTPGMSFD 558 (576)
Q Consensus 479 pT~aa~~l~idn~rW~GVPf~lrtGK~l~~~~~~I~i~fk~~~~~~f~~~~~~n~Lv~~i~P~~~i~l~~~~k~pg~~~~ 558 (576)
||||+.+++||||||+|||||+||||+|++|.+||+|+||++|+.+|...+.+|+|||+|||+|+|+|++|+|+||.++.
T Consensus 311 eTfaa~~l~Idn~RW~GVPF~lrtGK~L~~~~~eI~i~fk~~p~~~f~~~~~~n~Lvi~iqP~e~i~l~~~~k~pG~~~~ 390 (482)
T TIGR00871 311 ETFAALKLYIDNWRWAGVPFYLRTGKRLPEKVTEIRIQFKDVPLLLFKQNERNNELVIRIQPDEGVYLKFNAKKPGLNFE 390 (482)
T ss_pred cceEEEEEEEcCcccCCceEEEEeccccCCCeEEEEeeecCCChhhccCCCCCCEEEEEECCCCeEEEEEeccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999655569999999999999999999999999999
Q ss_pred eeEEEEeeecccccC
Q psy17439 559 MEETELDLTYGSRYK 573 (576)
Q Consensus 559 ~~~~~l~~~~~~~~~ 573 (576)
+++++|+++|.+.|+
T Consensus 391 ~~~~~l~~~~~~~~~ 405 (482)
T TIGR00871 391 TRPVKLDFSYGSRFG 405 (482)
T ss_pred eeEEEEEeechhccC
Confidence 999999999988764
No 7
>PLN02539 glucose-6-phosphate 1-dehydrogenase
Probab=100.00 E-value=2e-73 Score=615.80 Aligned_cols=256 Identities=63% Similarity=1.145 Sum_probs=242.3
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccCCCCcCeEEEEEeCccc
Q psy17439 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFG 80 (576)
Q Consensus 1 ~~~r~~~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n~~~~~kvriv~d~s~~ 80 (576)
||+|||||||||+|++||++||+.|+++|+|+||||||||||||+||||++|||+|.+|+|+||++||++|+|+++|..+
T Consensus 157 ~~~RiviEKPFG~Dl~SA~~Ln~~l~~~f~E~qIyRIDHYLGKe~VqNil~lRFaN~ifeplWNr~~I~~VqIt~~E~~G 236 (491)
T PLN02539 157 LWTRIVVEKPFGKDLESAEELSSQIGELFDESQLYRIDHYLGKELVQNLLVLRFANRFFLPLWNRDNIANVQIVFREDFG 236 (491)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhCCHHHeeccCccccHHHHHHHHHHHHhhHHHHhhhcccccceEEEEEecCCC
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCcccchhhHHHHHHHHHHhccCCcccCHHHHhhcccCCCCCCccceEEEeccCCCCCceEEEEeeeccC
Q psy17439 81 TQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRNEKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFG 160 (576)
Q Consensus 81 ~~~rg~sln~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG 160 (576)
++|||.||+.+|+++||+||||+|+|+.++|+.|..+.++||+.++
T Consensus 237 vegR~~yYD~~GalRDmvQNHLlQlLalvAMEpP~~~~~~~ir~eK---------------------------------- 282 (491)
T PLN02539 237 TEGRGGYFDEYGIIRDIIQNHLLQVLCLVAMEKPVSLKPEHIRDEK---------------------------------- 282 (491)
T ss_pred cChhhhhhhccchHHHHHHHHHHHHHHHHHhCCcCCCCHHHHHHHH----------------------------------
Confidence 9999999999999999999999999999999999988888886444
Q ss_pred CCCCHHhhhcccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCCCCcccCCCCcCCCCccceEee
Q psy17439 161 LPPSPYQAQRSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDCEKPHMLGSNESIKVLG 240 (576)
Q Consensus 161 ~~~SP~ll~~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i~~~d~~~~~~~~~~~~~K~LG 240 (576)
T Consensus 283 -------------------------------------------------------------------------------- 282 (491)
T PLN02539 283 -------------------------------------------------------------------------------- 282 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCceeeeeeeccCCCCCchHHHHHhhhhcccccCccchhhhHHHHHHHHHhhhcCCCCCCCCChhHHHHHHHHH
Q psy17439 241 IRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIASIDDVNGFLSPVTVYMKMFMQQVWLIKDVSWDSPLPGTLQRKWNRLI 320 (576)
Q Consensus 241 ~~w~~~~D~l~~~~~~~~~~~~~TKR~~ls~va~~yDPlGl~~p~~~~~K~~lq~l~~~~~~~Wd~~l~~e~~~~w~~~~ 320 (576)
T Consensus 283 -------------------------------------------------------------------------------- 282 (491)
T PLN02539 283 -------------------------------------------------------------------------------- 282 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcccceeeeeeeecCCCCcceEEEeecccccceeEEEEeeeccCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCC
Q psy17439 321 SEIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGAAYAAVVYLSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPG 400 (576)
Q Consensus 321 ~~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~ayga~~Ylk~l~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~ 400 (576)
T Consensus 283 -------------------------------------------------------------------------------- 282 (491)
T PLN02539 283 -------------------------------------------------------------------------------- 282 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEEeeCCCCCCceeeeeeeccccccccccccccccCCcccceecccccCCCCCCCcccccccCCCCCCCCCCChh
Q psy17439 401 EAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPT 480 (576)
Q Consensus 401 e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~aye~L~~~d~V~Gqy~~~~~deve~~W~yvde~~y~agS~gpT 480 (576)
+++|+++++++..++|+||| .+|+++++|+++|.|||
T Consensus 283 --------------------------------~kVL~s~rp~~~~~~VrGQY-----------~gY~ee~gV~~dS~TeT 319 (491)
T PLN02539 283 --------------------------------VKVLQSVEPIKDEEVVLGQY-----------EGYRDDPTVPDDSNTPT 319 (491)
T ss_pred --------------------------------HHHHhccCCCCccceeeecC-----------ccccccCCCCCCCCcch
Confidence 55677788777789999999 37999999999999999
Q ss_pred HHHHHhhhcCCccccCceeeecCccCCccccEEEEEecCCCCcCCCCC-CCCCEEEEEecCCCcEEEEeeecCCCCCCce
Q psy17439 481 FASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGK-TKRNELVMRVQPGEAVYVKMMTKTPGMSFDM 559 (576)
Q Consensus 481 ~aa~~l~idn~rW~GVPf~lrtGK~l~~~~~~I~i~fk~~~~~~f~~~-~~~n~Lv~~i~P~~~i~l~~~~k~pg~~~~~ 559 (576)
||+.+++||||||+||||||||||+|++|.+||+|+||++|+.+|... ..+|+|||+|||+|+|.|++++|+||.++.+
T Consensus 320 faa~kl~Idn~RW~GVPFylrtGK~L~~~~teI~I~Fk~~p~~~f~~~~~~~N~Lvi~iqP~e~i~l~~~~k~pG~~~~~ 399 (491)
T PLN02539 320 FASVVLRINNERWEGVPFILKAGKALDSRKAEIRVQFKDVPGDIFKCQKQGRNEFVIRLQPSEAMYMKLTVKQPGLEMST 399 (491)
T ss_pred heeEEEEecCcccCCCCEEEEccCCCCcCeeEEEEEeccCChhhcccCCCCCCEEEEEECCCCcEEEEEeccCCCCCCce
Confidence 999999999999999999999999999999999999999999999643 3689999999999999999999999999999
Q ss_pred eEEEEeeecccccC
Q psy17439 560 EETELDLTYGSRYK 573 (576)
Q Consensus 560 ~~~~l~~~~~~~~~ 573 (576)
++++|+++|.+.|.
T Consensus 400 ~~~~l~~~~~~~~~ 413 (491)
T PLN02539 400 VQSELDLSYGQRYQ 413 (491)
T ss_pred eEeeeeeechhhcC
Confidence 99999999987764
No 8
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-73 Score=613.94 Aligned_cols=263 Identities=48% Similarity=0.843 Sum_probs=245.0
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccCCCCcCeEEEEEeCccc
Q psy17439 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFG 80 (576)
Q Consensus 1 ~~~r~~~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n~~~~~kvriv~d~s~~ 80 (576)
||+|||||||||+|++||++||+.|+++|+|+||||||||||||+||||++|||+|++|+|+||++||++|+|+++|+.+
T Consensus 137 ~~~RiviEKPFG~Dl~SA~~Ln~~l~~~f~E~qIyRIDHYLGKe~VqNil~lRFaN~~feplWNr~~I~~VqIt~~E~~G 216 (482)
T PRK12853 137 EGRRVVLEKPFGHDLASARALNATLAKVFDEDQIYRIDHFLGKETVQNLLALRFANALLEPLWNRNHIDHVQITVAETLG 216 (482)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCHHHeeccCccccHHHHHHHHHHHHhhHhhhhhhcccccceeEEEEecCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCcccchhhHHHHHHHHHHhccCCcccCHHHHhhcccCCCCCCccceEEEeccCCCCCceEEEEeeeccC
Q psy17439 81 TQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRNEKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFG 160 (576)
Q Consensus 81 ~~~rg~sln~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG 160 (576)
++|||.||+.+|+++||+||||+|||+.++|++|..+.+.||+.++
T Consensus 217 vegR~~yyD~~GalRDmvQNHLlQlLalvAME~P~~~~~~~ir~eK---------------------------------- 262 (482)
T PRK12853 217 VEGRGGFYDATGALRDMVQNHLLQLLALVAMEPPASFDADAVRDEK---------------------------------- 262 (482)
T ss_pred cChhhhhhcccchHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHH----------------------------------
Confidence 9999999999999999999999999999999999988888886554
Q ss_pred CCCCHHhhhcccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCCCCcccCCCCcCCCCccceEee
Q psy17439 161 LPPSPYQAQRSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDCEKPHMLGSNESIKVLG 240 (576)
Q Consensus 161 ~~~SP~ll~~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i~~~d~~~~~~~~~~~~~K~LG 240 (576)
T Consensus 263 -------------------------------------------------------------------------------- 262 (482)
T PRK12853 263 -------------------------------------------------------------------------------- 262 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCceeeeeeeccCCCCCchHHHHHhhhhcccccCccchhhhHHHHHHHHHhhhcCCCCCCCCChhHHHHHHHHH
Q psy17439 241 IRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIASIDDVNGFLSPVTVYMKMFMQQVWLIKDVSWDSPLPGTLQRKWNRLI 320 (576)
Q Consensus 241 ~~w~~~~D~l~~~~~~~~~~~~~TKR~~ls~va~~yDPlGl~~p~~~~~K~~lq~l~~~~~~~Wd~~l~~e~~~~w~~~~ 320 (576)
T Consensus 263 -------------------------------------------------------------------------------- 262 (482)
T PRK12853 263 -------------------------------------------------------------------------------- 262 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcccceeeeeeeecCCCCcceEEEeecccccceeEEEEeeeccCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCC
Q psy17439 321 SEIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGAAYAAVVYLSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPG 400 (576)
Q Consensus 321 ~~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~ayga~~Ylk~l~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~ 400 (576)
T Consensus 263 -------------------------------------------------------------------------------- 262 (482)
T PRK12853 263 -------------------------------------------------------------------------------- 262 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEEeeCCCCCCceeeeeeeccccccccccccccccCCcccce--ecccccCCCCCCCcccccccCCCCCCCCCCC
Q psy17439 401 EAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIPPLQLEDV--VLGQYTGDPNGEGDAKYGYLDDKTVPPGSNT 478 (576)
Q Consensus 401 e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~aye~L~~~d~--V~Gqy~~~~~deve~~W~yvde~~y~agS~g 478 (576)
+++|+++++++.+++ |+|||+.+.. .++.+.+|+|+++|+++|.|
T Consensus 263 --------------------------------~kvL~s~r~~~~~~v~~vrGQY~~g~~-~g~~~~gY~~e~gV~~~S~T 309 (482)
T PRK12853 263 --------------------------------AKVLRAIRPLDPDDVHTVRGQYTAGTV-GGEPVPGYREEPGVDPDSRT 309 (482)
T ss_pred --------------------------------HHHHhcCCCCCcccccEEEecCcCCCC-CCCCCCCcccCCCCCCCCCC
Confidence 445666666655555 9999987653 56678899999999999999
Q ss_pred hhHHHHHhhhcCCccccCceeeecCccCCccccEEEEEecCCCCcCCCCC--CCCCEEEEEecCCCcEEEEeeecCCCCC
Q psy17439 479 PTFASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGK--TKRNELVMRVQPGEAVYVKMMTKTPGMS 556 (576)
Q Consensus 479 pT~aa~~l~idn~rW~GVPf~lrtGK~l~~~~~~I~i~fk~~~~~~f~~~--~~~n~Lv~~i~P~~~i~l~~~~k~pg~~ 556 (576)
||||+.++++|||||+|||||+||||+|++|.+||+|+||++|+.+|+.. +.+|+|||+|||+|+|++++|+|.||.+
T Consensus 310 eTfaa~~l~Idn~RW~GVPF~lrtGK~L~~~~~eI~i~fk~~p~~~f~~~~~~~~n~Lvi~iqP~e~i~l~~~~k~pg~~ 389 (482)
T PRK12853 310 ETFVALKLEIDNWRWAGVPFYLRTGKRLAERRTEIVITFKPVPHALFRGTGVEPPNRLVIRLQPDEGISLELNVKRPGPG 389 (482)
T ss_pred cceEEEEEEEcCcccCCCcEEEEccCCCCCceEEEEEEEcCCChhhccCccCCCCCEEEEEECCCCcEEEEEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999643 3589999999999999999999999999
Q ss_pred CceeEEEEeeeccc
Q psy17439 557 FDMEETELDLTYGS 570 (576)
Q Consensus 557 ~~~~~~~l~~~~~~ 570 (576)
+.+++++|+++|.+
T Consensus 390 ~~~~~~~l~~~~~~ 403 (482)
T PRK12853 390 MRLRPVELDADYAD 403 (482)
T ss_pred CceEEEeEEeEccC
Confidence 99999999999985
No 9
>PRK12854 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=100.00 E-value=9e-73 Score=609.83 Aligned_cols=253 Identities=39% Similarity=0.702 Sum_probs=240.2
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccCCCCcCeEEEEEeCcccc
Q psy17439 2 WTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFGT 81 (576)
Q Consensus 2 ~~r~~~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n~~~~~kvriv~d~s~~~ 81 (576)
++|||||||||+|++||++||+.|+++|+|+||||||||||||+||||++|||+|.+|+|+||++||++|+|+++|+.++
T Consensus 146 ~~RiViEKPFG~Dl~SA~~Ln~~l~~~f~E~qIyRIDHYLGKe~VqNll~lRFaN~~feplWNr~~I~~VqIt~~E~~Gv 225 (484)
T PRK12854 146 GSRVVMEKPFGTDLASAEALNAAVHEVFDESQIFRIDHFLGKEAAQNILAFRFANGLFEPIWNREFIDHVQIDVPETLGV 225 (484)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCHHHeeccCccccHHHHHHHHHHHHhHHHHHhhhcccccceeEEEEecCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCcccchhhHHHHHHHHHHhccCCcccCHHHHhhcccCCCCCCccceEEEeccCCCCCceEEEEeeeccCC
Q psy17439 82 QGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRNEKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFGL 161 (576)
Q Consensus 82 ~~rg~sln~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG~ 161 (576)
+|||.||+.+|+++||+||||+|+|+.++|+.|..+.++||+.++
T Consensus 226 egR~~yYD~~GalRDmvQNHLlQlLalvAMEpP~~~~a~~ir~eK----------------------------------- 270 (484)
T PRK12854 226 DTRAAFYDATGAYRDMVVTHLFQVLAFVAMEPPTALEPDAISEEK----------------------------------- 270 (484)
T ss_pred CchhhhhcccccHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH-----------------------------------
Confidence 999999999999999999999999999999999988888886443
Q ss_pred CCCHHhhhcccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCCCCcccCCCCcCCCCccceEeee
Q psy17439 162 PPSPYQAQRSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDCEKPHMLGSNESIKVLGI 241 (576)
Q Consensus 162 ~~SP~ll~~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i~~~d~~~~~~~~~~~~~K~LG~ 241 (576)
T Consensus 271 -------------------------------------------------------------------------------- 270 (484)
T PRK12854 271 -------------------------------------------------------------------------------- 270 (484)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCCceeeeeeeccCCCCCchHHHHHhhhhcccccCccchhhhHHHHHHHHHhhhcCCCCCCCCChhHHHHHHHHHH
Q psy17439 242 RWCPKSDSFFNSVSVELDSPTTTKRQVLSLIASIDDVNGFLSPVTVYMKMFMQQVWLIKDVSWDSPLPGTLQRKWNRLIS 321 (576)
Q Consensus 242 ~w~~~~D~l~~~~~~~~~~~~~TKR~~ls~va~~yDPlGl~~p~~~~~K~~lq~l~~~~~~~Wd~~l~~e~~~~w~~~~~ 321 (576)
T Consensus 271 -------------------------------------------------------------------------------- 270 (484)
T PRK12854 271 -------------------------------------------------------------------------------- 270 (484)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcccceeeeeeeecCCCCcceEEEeecccccceeEEEEeeeccCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCCC
Q psy17439 322 EIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGAAYAAVVYLSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGE 401 (576)
Q Consensus 322 ~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~ayga~~Ylk~l~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~e 401 (576)
T Consensus 271 -------------------------------------------------------------------------------- 270 (484)
T PRK12854 271 -------------------------------------------------------------------------------- 270 (484)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEEeeCCCCCCceeeeeeeccccccccccccccccCCcccceecccccCCCCCCCcccccccCCCCCCCCCCChhH
Q psy17439 402 AVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPTF 481 (576)
Q Consensus 402 ~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~aye~L~~~d~V~Gqy~~~~~deve~~W~yvde~~y~agS~gpT~ 481 (576)
+++|+|+++++..++|+|||+ +|+++++|+++|.||||
T Consensus 271 -------------------------------~kvLrslrp~~~~~~VrGQY~-----------gY~~e~gV~~~S~TeTf 308 (484)
T PRK12854 271 -------------------------------NKVFRSMRPLDPAEVVRGQYS-----------GYRDEPGVAPDSTTETF 308 (484)
T ss_pred -------------------------------HHHHHcCcCCCccceEeeccc-----------ccccCCCCCCCCCCcce
Confidence 556778888777899999996 79999999999999999
Q ss_pred HHHHhhhcCCccccCceeeecCccCCccccEEEEEecCCCCcCCCCC----CCCCEEEEEecCCCcEEEEeeecCCCCCC
Q psy17439 482 ASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGK----TKRNELVMRVQPGEAVYVKMMTKTPGMSF 557 (576)
Q Consensus 482 aa~~l~idn~rW~GVPf~lrtGK~l~~~~~~I~i~fk~~~~~~f~~~----~~~n~Lv~~i~P~~~i~l~~~~k~pg~~~ 557 (576)
|+.+++||||||+||||||||||+|++|.+||+|+||++|+.+|+.. ..+|+|||+|||+|+|.+++|+|.||.++
T Consensus 309 aa~kl~Idn~RW~GVPFylrtGK~L~~~~teI~I~Fk~~p~~~f~~~~~~~~~~N~Lvi~iqP~e~i~l~~~~K~pg~~~ 388 (484)
T PRK12854 309 VALKVWIDNWRWAGVPFYLRTGKRMAEGQRIISIAFREPPYSMFPAGSVGAQGPDHLTFDLADNSKVSLSFYGKRPGPGM 388 (484)
T ss_pred eEEEEEEcCCccCCceEEEEecCccCCceEEEEEEecCCChhhcccccccCCCCCEEEEEECCCCeEEEEEEecCCCCCC
Confidence 99999999999999999999999999999999999999999999641 36899999999999999999999999999
Q ss_pred ceeEEEEeeecccc
Q psy17439 558 DMEETELDLTYGSR 571 (576)
Q Consensus 558 ~~~~~~l~~~~~~~ 571 (576)
.+++++|+++|.+.
T Consensus 389 ~l~~~~l~~~~~~~ 402 (484)
T PRK12854 389 RLDKLSLQFSLKDT 402 (484)
T ss_pred ceeEEEEEeecccc
Confidence 99999999999877
No 10
>KOG0563|consensus
Probab=100.00 E-value=6.9e-71 Score=574.48 Aligned_cols=266 Identities=68% Similarity=1.140 Sum_probs=251.0
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccCCCCcCeEEEEEeCccc
Q psy17439 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFG 80 (576)
Q Consensus 1 ~~~r~~~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n~~~~~kvriv~d~s~~ 80 (576)
||||||||||||+|++||++|.++|+.+|+|+||||||||||||+|||++++||+|.+|+|+||++||.+|+|+|.|..+
T Consensus 154 GwtRvIVEKPFG~d~~Sa~~L~~~l~~~f~E~qiyRIDHYLGKemV~nl~~lRf~N~i~~~lWNR~~I~sV~I~fkE~fG 233 (499)
T KOG0563|consen 154 GWTRVIVEKPFGRDLESAQELSSELGKLFDEEQIYRIDHYLGKELVQNLLVLRFANRIFEPLWNRDYIESVQIVFKEDFG 233 (499)
T ss_pred CceEEEEecCCCCchHhHHHHHHHHHhhcCchheeeehhhhhHHHHhhhhhheecchhhcccccccceeEEEEEEeccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCcccchhhHHHHHHHHHHhccCCcccCHHHHhhcccCCCCCCccceEEEeccCCCCCceEEEEeeeccC
Q psy17439 81 TQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRNEKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFG 160 (576)
Q Consensus 81 ~~~rg~sln~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG 160 (576)
++|||.|++.++.+||++||||+|||..++|++|....++||+.++
T Consensus 234 tEGRggYfD~~GIIRDvvQNHLlQiL~LvAME~P~s~~aedir~eK---------------------------------- 279 (499)
T KOG0563|consen 234 TEGRGGYFDEYGIIRDVVQNHLLQILTLVAMEKPKSLDAEDIRDEK---------------------------------- 279 (499)
T ss_pred ccCccccccccccHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHH----------------------------------
Confidence 9999999999999999999999999999999999988888887554
Q ss_pred CCCCHHhhhcccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCCCCcccCCCCcCCCCccceEee
Q psy17439 161 LPPSPYQAQRSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDCEKPHMLGSNESIKVLG 240 (576)
Q Consensus 161 ~~~SP~ll~~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i~~~d~~~~~~~~~~~~~K~LG 240 (576)
T Consensus 280 -------------------------------------------------------------------------------- 279 (499)
T KOG0563|consen 280 -------------------------------------------------------------------------------- 279 (499)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCceeeeeeeccCCCCCchHHHHHhhhhcccccCccchhhhHHHHHHHHHhhhcCCCCCCCCChhHHHHHHHHH
Q psy17439 241 IRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIASIDDVNGFLSPVTVYMKMFMQQVWLIKDVSWDSPLPGTLQRKWNRLI 320 (576)
Q Consensus 241 ~~w~~~~D~l~~~~~~~~~~~~~TKR~~ls~va~~yDPlGl~~p~~~~~K~~lq~l~~~~~~~Wd~~l~~e~~~~w~~~~ 320 (576)
T Consensus 280 -------------------------------------------------------------------------------- 279 (499)
T KOG0563|consen 280 -------------------------------------------------------------------------------- 279 (499)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcccceeeeeeeecCCCCcceEEEeecccccceeEEEEeeeccCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCC
Q psy17439 321 SEIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGAAYAAVVYLSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPG 400 (576)
Q Consensus 321 ~~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~ayga~~Ylk~l~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~ 400 (576)
T Consensus 280 -------------------------------------------------------------------------------- 279 (499)
T KOG0563|consen 280 -------------------------------------------------------------------------------- 279 (499)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEEeeCCCCCCceeeeeeeccccccccccccccccCCcccceecccccCCCCCCCcccccccCCCCCCCCCCChh
Q psy17439 401 EAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPT 480 (576)
Q Consensus 401 e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~aye~L~~~d~V~Gqy~~~~~deve~~W~yvde~~y~agS~gpT 480 (576)
+++|+++++++.+|+|.|||....... ..||+|.++||.||.|||
T Consensus 280 --------------------------------VkvLks~~~v~~~dvVlGQY~~~~~g~---~~gy~dd~~V~~dS~tpT 324 (499)
T KOG0563|consen 280 --------------------------------VKVLKSIRPVDLEDVVLGQYKSSSDGK---VPGYLDDKTVPKDSLTPT 324 (499)
T ss_pred --------------------------------HHHHHhhcCCchhheEEeeeccccccC---CCccccCCCCCCCCCCcc
Confidence 456777888888999999998765422 349999999999999999
Q ss_pred HHHHHhhhcCCccccCceeeecCccCCccccEEEEEecCCCCcCCCCC--CCCCEEEEEecCCCcEEEEeeecCCCCCCc
Q psy17439 481 FASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGK--TKRNELVMRVQPGEAVYVKMMTKTPGMSFD 558 (576)
Q Consensus 481 ~aa~~l~idn~rW~GVPf~lrtGK~l~~~~~~I~i~fk~~~~~~f~~~--~~~n~Lv~~i~P~~~i~l~~~~k~pg~~~~ 558 (576)
||++.++|||.||.||||++++||+|+++..||+|+||..+..+|... +.+|+|||||||+|+|++++|+|+||+++.
T Consensus 325 faa~~l~Idn~RW~GVPFil~aGKal~e~~~eiriqFk~v~g~lf~~~~~~~~neLVirvqP~eavylk~~~k~Pgl~~~ 404 (499)
T KOG0563|consen 325 FAAVALHIDNERWEGVPFILRAGKALNERKAEIRIQFKAVPGGLFSDVRDCKRNELVIRVQPDEAVYLKINIKQPGLGMQ 404 (499)
T ss_pred eeeEEEeecCccccCCCEEEEcccccccceeEEEEEeeccCCccccCccccccceEEEEecCChheeeEeecCCCCccCC
Confidence 999999999999999999999999999999999999999999999743 588999999999999999999999999999
Q ss_pred eeEEEEeeecccccCcC
Q psy17439 559 MEETELDLTYGSRYKCV 575 (576)
Q Consensus 559 ~~~~~l~~~~~~~~~~~ 575 (576)
+...+||+.|+++|+++
T Consensus 405 ~~~~eldl~y~~ry~d~ 421 (499)
T KOG0563|consen 405 PDESELDLLYSDRYKDV 421 (499)
T ss_pred cchhhcCCchhhhcCCc
Confidence 99999999999999853
No 11
>PF02781 G6PD_C: Glucose-6-phosphate dehydrogenase, C-terminal domain; InterPro: IPR022675 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the C-terminal domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 1QKI_E 2BH9_A 2BHL_A 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A ....
Probab=100.00 E-value=4.5e-52 Score=425.53 Aligned_cols=141 Identities=43% Similarity=0.777 Sum_probs=107.5
Q ss_pred ccccccccCCcccceecccccCCCCCCCcccccccCCCCCCCCCCChhHHHHHhhhcCCccccCceeeecCccCCccccE
Q psy17439 433 VKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVLKIKNERWDGVPFILRCGKALNERKAD 512 (576)
Q Consensus 433 ~~vl~aye~L~~~d~V~Gqy~~~~~deve~~W~yvde~~y~agS~gpT~aa~~l~idn~rW~GVPf~lrtGK~l~~~~~~ 512 (576)
+++|+++++++.+++|+|||+.+.. .++...+|+++++|+++|.|||||++++++||+||+|||||+||||+|++|.+|
T Consensus 78 ~kvL~~l~~~~~~~~V~GQY~~~~~-~~~~~~gY~~e~gV~~~S~TeTf~a~~l~Idn~RW~gVPF~lrtGK~L~~k~te 156 (293)
T PF02781_consen 78 VKVLRSLRPIDPEDVVRGQYTAGEI-GGEEVPGYREEEGVPPDSTTETFAAVKLFIDNWRWAGVPFYLRTGKRLAEKSTE 156 (293)
T ss_dssp HHHHTTB----CCCEEEEEEEEESS-STGGSS-GGGSTTS-TT----SEEEEEEEB-STTTTT-EEEEEEESSBSS-EEE
T ss_pred HHHHHhhCCCccccccccccccCcc-CCccCccccccCCCCCCCCCCccEEEEEEEeCCcccCCeeeEEcccccccceEE
Confidence 4467777777778999999987654 445578999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcCCCCCCCCCEEEEEecCCCcEEEEeeecCCCCCCceeEEEEeeecccccCc
Q psy17439 513 IRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDLTYGSRYKC 574 (576)
Q Consensus 513 I~i~fk~~~~~~f~~~~~~n~Lv~~i~P~~~i~l~~~~k~pg~~~~~~~~~l~~~~~~~~~~ 574 (576)
|+|+||++|+.+|+..+.+|+|+|+|||+++|.|++|+|+||.++.+++++|+++|.+.|++
T Consensus 157 I~I~Fk~~~~~~f~~~~~~N~Lvi~iqP~e~i~l~~~~K~Pg~~~~~~~~~L~~~~~~~~~~ 218 (293)
T PF02781_consen 157 IRIVFKPPPHNLFGENCPPNRLVIRIQPDEGISLRFNIKKPGLSFELEPVELDFSYSDSFEG 218 (293)
T ss_dssp EEEEE---STTTSCCS----EEEEEEESS-EEEEEEEEE-SSSS-SEEEEEEEEEHHHHTCC
T ss_pred EEEEEccCChhhccccccCCEEEEecCCccchhhhhccCCCCCCCcceEEEEeeeecccccc
Confidence 99999999999997667899999999999999999999999999999999999999887653
No 12
>cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons. This subfamily represents the RT domain of a multifunctional enzyme. C-terminal to the RT domain is a domain homologous to aspartic proteinases (corresponding to Merops family A17) encoded by retrotransposons and retroviruses. RT catalyzes DNA replication from an RNA template and is responsible for the replication of retroelements.
Probab=100.00 E-value=6e-38 Score=310.04 Aligned_cols=185 Identities=32% Similarity=0.515 Sum_probs=164.8
Q ss_pred cccc---ccCCCC-cCeEEEEEeCccccCcccccccccCcccchhhHHHHHHHHHHhccCCcccCHHHHhh--cccCCCC
Q psy17439 58 IFTP---TWNREN-IASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRN--EKVHPCP 131 (576)
Q Consensus 58 ~~~p---~~n~~~-~~kvriv~d~s~~~~~rg~sln~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~--~~v~v~~ 131 (576)
||.| |.++++ ++|+|+|+|+|++.. |.+||+.++.||..+++|.++|++||..+++ +++||++ +||.+.|
T Consensus 2 ~y~ph~~V~~~~~~~~k~R~V~D~s~~~~--g~sLN~~l~~gp~~~~~l~~iL~~~R~~~~~--~~~Di~~af~qI~i~~ 77 (213)
T cd01644 2 WYLPHHAVIKPSKTTTKLRVVFDASARYN--GVSLNDMLLKGPDLLNSLFGVLLRFRQGKIA--VSADIEKMFHQVKVRP 77 (213)
T ss_pred cccCCceecCCCCCCCccEEEEecccccC--CchhhHHhccCCccccchhhhheeeecCcee--EehhHHHhhhheecCc
Confidence 5555 668877 999999999999884 6799999999999999999999999988876 4689999 5899999
Q ss_pred CCccceEEEeccCCCCCc-eEEEEeeeccCCCCCHHhhhc--------------------ccceeeeccccccHHHHHHH
Q psy17439 132 EDRIHQHILWRPDPTQEV-KEFELKTVTFGLPPSPYQAQR--------------------SIYVDDIVSGAVSISAAKTL 190 (576)
Q Consensus 132 edr~~~rflW~~~~~~~~-~~yr~~rv~FG~~~SP~ll~~--------------------~~YVDD~~~~~~~~~ea~~~ 190 (576)
+||++++|+|+.+.+... ..|+|+|||||+++||+++++ ++||||++.+++|++|+.+.
T Consensus 78 ~d~~~~~F~w~~~~~~~~~~~Y~~~~~pFG~~~AP~~~~~~~~~~~~~~~~~~~~~~i~~~~YvDDili~~~s~~e~~~~ 157 (213)
T cd01644 78 EDRDVLRFLWRKDGDEPKPIEYRMTVVPFGAASAPFLANRALKQHAEDHPHEAAAKIIKRNFYVDDILVSTDTLNEAVNV 157 (213)
T ss_pred ccCceEEEEEeCCCCCCcceEEEEEEEccCCccchHHHHHHHHHHHhhcchhhHHHHHHHeeecccceecCCCHHHHHHH
Confidence 999999999999887766 999999999999999999871 49999999999999999999
Q ss_pred HHHHHHHHhhcCCceeeeeccchhhccCCCCcccCCCCcCCCCccceEeeeeeccCCC
Q psy17439 191 CNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDCEKPHMLGSNESIKVLGIRWCPKSD 248 (576)
Q Consensus 191 ~~~~~~~~~~~gf~lrk~~sN~~~v~~~i~~~d~~~~~~~~~~~~~K~LG~~w~~~~D 248 (576)
.+++.++|+++||+++||+||+.++++.++++.- ......+..+|+||+.|++.+|
T Consensus 158 ~~~v~~~L~~~Gf~l~kw~sn~~~~l~~~~~~~~--~~~~~~~~~~k~LGl~W~~~~D 213 (213)
T cd01644 158 AKRLIALLKKGGFNLRKWASNSQEVLDDLPEERV--LLDRDSDVTEKTLGLRWNPKTD 213 (213)
T ss_pred HHHHHHHHHhCCccchhcccCchhhhhccccccc--ccccccccchhcccceeeccCC
Confidence 9999999999999999999999999999998731 1112355678999999999987
No 13
>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family.
Probab=99.97 E-value=9.8e-31 Score=247.55 Aligned_cols=115 Identities=42% Similarity=0.798 Sum_probs=106.4
Q ss_pred CchHHHHHhhhhcccccCccchhhhHHHHHHHHHhhhcCCCCCCCCChhHHHHHHHHHHHHhcccceeeeeeeecCCCCc
Q psy17439 263 TTKRQVLSLIASIDDVNGFLSPVTVYMKMFMQQVWLIKDVSWDSPLPGTLQRKWNRLISEIHQLSEIKIPRFVLCSDYLS 342 (576)
Q Consensus 263 ~TKR~~ls~va~~yDPlGl~~p~~~~~K~~lq~l~~~~~~~Wd~~l~~e~~~~w~~~~~~l~~~~~i~ipR~l~~~~~~~ 342 (576)
+|||+++|.+|++|||+|+++|+++++|+++|++|+. +++||++||+++.++|.+|.+++..+++++|||++...+..+
T Consensus 1 pTKR~ils~ia~~yDPlGl~~p~~i~~K~llq~lw~~-~l~WD~~lp~el~~~w~~~~~~l~~~~~i~iPR~i~~~~~~~ 79 (159)
T PF05380_consen 1 PTKRQILSFIASIYDPLGLLAPIIIRAKLLLQKLWQS-KLDWDDPLPDELRKEWKKWLKELESLSPIRIPRCIPISDYRS 79 (159)
T ss_pred CChHHHHHHHHHHcCcchhhHHHHHHHHHHHHhhhcc-ccchhhhhhHHHHHHHHHHHHHHhhcccccCCcccccccccc
Confidence 6999999999999999999999999999999999995 899999999999999999999999999999999877677788
Q ss_pred ceEEEeecccccceeEEEEeeeccCceeEEEEEeec
Q psy17439 343 LDLIGFGDASGAAYAAVVYLSALNERKADIRIQYTD 378 (576)
Q Consensus 343 ~~L~~F~DAS~~ayga~~Ylk~l~~~~tEI~I~Fk~ 378 (576)
.+||+|||||+.|||||+|+|.-..+..++++.+.+
T Consensus 80 ~~L~~F~DAS~~aygavvYlr~~~~~~~~~~ll~aK 115 (159)
T PF05380_consen 80 VELHVFCDASESAYGAVVYLRSYSDGSVQVRLLFAK 115 (159)
T ss_pred eeeeEeecccccceeeEeEeeeccCCceeeeeeeec
Confidence 999999999999999999999966666777776644
No 14
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=2.7e-23 Score=221.51 Aligned_cols=132 Identities=27% Similarity=0.493 Sum_probs=120.8
Q ss_pred eeeccCceeEEEEEeecCCCCCCCCCC----CCcEEEEEecCCCeEEEEEEeeCCCCCCceeeeeeeccccccccccccc
Q psy17439 362 LSALNERKADIRIQYTDVPGDIFEGKT----KRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLK 437 (576)
Q Consensus 362 lk~l~~~~tEI~I~Fk~~p~~~f~~~~----~~N~Lv~riqP~e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~ 437 (576)
.|+|+++.|||+|+||++|+.+|.... .+|.|||||||+|+|++++++|.||.++...+++|++.|...+ ...++
T Consensus 336 GKrl~~k~teI~i~FK~~p~~lF~~~~~~~~~~N~LviriQPdegI~l~~~~K~PG~~~~~~~l~l~f~~~~~~-~~~~~ 414 (483)
T COG0364 336 GKRLPKKVTEIVIHFKRVPHNLFSDPSRSSLEQNRLVIRIQPDEGISLKFNVKVPGLGLQTRPLDLDFSYDSKF-MRIPE 414 (483)
T ss_pred CCCCCCCeeEEEEEECCCChhhcCCcccCcccCcEEEEEECCCCceEEEEeccCCCCccccceeeeeccccccc-ccCch
Confidence 478999999999999999999998532 4799999999999999999999999999999999999998776 56899
Q ss_pred cccCCcccceecccccCC-CCCCCcccccccCC----------CCCCCCCCChhHHHHHhhhcCCcccc
Q psy17439 438 CIPPLQLEDVVLGQYTGD-PNGEGDAKYGYLDD----------KTVPPGSNTPTFASAVLKIKNERWDG 495 (576)
Q Consensus 438 aye~L~~~d~V~Gqy~~~-~~deve~~W~yvde----------~~y~agS~gpT~aa~~l~idn~rW~G 495 (576)
|||+| +.|+++|+.++| ++||+|++|+++|+ +.|++|||||..|..++..++..|+.
T Consensus 415 AYErL-llD~i~Gd~tlF~r~DEve~aWk~vdpIl~~w~~~~~~~Y~aGswGP~~a~~li~~~g~~W~~ 482 (483)
T COG0364 415 AYERL-LLDAIRGDQTLFVRRDEVEAAWKIVDPILEAWKNDPPPPYEAGSWGPKAADELLERDGREWRR 482 (483)
T ss_pred HHHHH-HHHHHcCCccccCcHHHHHHHHHhhhHHHhhcccCCCCCcCCCCcChHHHHHHhhccCCCCCC
Confidence 99997 899999999999 55899999999884 68999999999999999999999975
No 15
>PLN02333 glucose-6-phosphate 1-dehydrogenase
Probab=99.86 E-value=1.2e-22 Score=223.22 Aligned_cols=134 Identities=32% Similarity=0.562 Sum_probs=122.0
Q ss_pred eeeccCceeEEEEEeecCCCCCCCCC------CCCcEEEEEecCCCeEEEEEEeeCCCCCCceeeeeeeccccccccccc
Q psy17439 362 LSALNERKADIRIQYTDVPGDIFEGK------TKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKV 435 (576)
Q Consensus 362 lk~l~~~~tEI~I~Fk~~p~~~f~~~------~~~N~Lv~riqP~e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~v 435 (576)
.|+|+++.+||+|+||++|+.+|.+. ..+|+|||||||+|+|++++++|.||+++.+++++|+++|...++...
T Consensus 448 GK~L~~r~tEI~I~FK~vp~~lf~~~~~~~~~~~~N~LViriQP~e~I~l~~~~K~PG~~~~l~~~~L~~~y~~~~~~~~ 527 (604)
T PLN02333 448 GKALHTKSAEIRVQFRHVPGNLYNRNFGTDLDQATNELVIRVQPDEAIYLKINNKVPGLGMRLDRSNLNLLYAARYSKEI 527 (604)
T ss_pred cCCCCcCceEEEEEecCCChhhcccccccccCCCCCEEEEEECCCCeEEEEEecCCCCCCCceeEEEEEeechhhcCCCC
Confidence 57899999999999999999999641 258999999999999999999999999999999999999998876677
Q ss_pred cccccCCcccceecccccCC-CCCCCcccccccCC------------CCCCCCCCChhHHHHHhhhcCCccccC
Q psy17439 436 LKCIPPLQLEDVVLGQYTGD-PNGEGDAKYGYLDD------------KTVPPGSNTPTFASAVLKIKNERWDGV 496 (576)
Q Consensus 436 l~aye~L~~~d~V~Gqy~~~-~~deve~~W~yvde------------~~y~agS~gpT~aa~~l~idn~rW~GV 496 (576)
++|||+| +.|+++|+.++| +.||++++|+++++ ..|++|||||..|..++..++.+|...
T Consensus 528 pdAYErL-LlD~i~Gd~tlFvR~DEve~aWri~~PIL~~~~~~~~~p~~Y~~GS~GP~~A~~l~~~~g~~W~~~ 600 (604)
T PLN02333 528 PDAYERL-LLDAIEGERRLFIRSDELDAAWALFTPLLKELEEKKIIPEYYPYGSRGPVGAHYLAARYKVRWGDL 600 (604)
T ss_pred CCcHHHH-HHHHHcCCccccCCcHHHHHHHHHhHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHcCCeeCcc
Confidence 8999998 899999999999 55899999998773 459999999999999999999999874
No 16
>PF02781 G6PD_C: Glucose-6-phosphate dehydrogenase, C-terminal domain; InterPro: IPR022675 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the C-terminal domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 1QKI_E 2BH9_A 2BHL_A 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A ....
Probab=99.86 E-value=3.8e-23 Score=212.35 Aligned_cols=274 Identities=35% Similarity=0.617 Sum_probs=183.9
Q ss_pred hhhhccccccccccCCCCcCeEEEEEeCccccCcccccccccCcccchhhHHHHHHHHHHhccCCcccCHHHHhhcccCC
Q psy17439 50 MTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRNEKVHP 129 (576)
Q Consensus 50 ~~~r~~n~~~~p~~n~~~~~kvriv~d~s~~~~~rg~sln~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~~~v~v 129 (576)
|++||+|++|+|+||++||++|+|+++|+.+++|||.||+.+|+++||+||||||||+..+|+.|..+.++||+.+++.+
T Consensus 1 l~~RFaN~~fe~lWN~~~I~~VqIt~~E~~Gve~R~~yYD~~GaiRDmvQNHllQlL~lvaMe~P~~~~~~~ir~eK~kv 80 (293)
T PF02781_consen 1 LALRFANPIFEPLWNRNYIDSVQITLAETLGVEGRGGYYDQSGAIRDMVQNHLLQLLALVAMEPPASLDAEDIRDEKVKV 80 (293)
T ss_dssp HHHHHS-HHHHTTSSTTTEEEEEEEEEESS-STSTHHHHHHHHHHHHTTTTHHHHHHHHHH----SSSSHHHHHHHHHHH
T ss_pred CcEeechHhhHhhhCccceeEEEEEEEcCcccccccccccccchHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998876543
Q ss_pred CCCCccceEEEeccCCCCCceEEEEeeeccCCCCCHHhhhcccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeee
Q psy17439 130 CPEDRIHQHILWRPDPTQEVKEFELKTVTFGLPPSPYQAQRSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWA 209 (576)
Q Consensus 130 ~~edr~~~rflW~~~~~~~~~~yr~~rv~FG~~~SP~ll~~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~ 209 (576)
-.. ++-+ ++ +++ -+-+|.
T Consensus 81 L~~----l~~~---~~-~~~------------------------------------------------------V~GQY~ 98 (293)
T PF02781_consen 81 LRS----LRPI---DP-EDV------------------------------------------------------VRGQYT 98 (293)
T ss_dssp HTT----B-------C-CCE------------------------------------------------------EEEEEE
T ss_pred HHh----hCCC---cc-ccc------------------------------------------------------cccccc
Confidence 100 0000 00 000 000111
Q ss_pred c---cchhhccCCCCcccCCCCcCCCCccceEeeeeeccCCCce-eeeeeeccCCCCCchHHHHHhhhhcccccCccchh
Q psy17439 210 S---SHPEVLSDLPVEDCEKPHMLGSNESIKVLGIRWCPKSDSF-FNSVSVELDSPTTTKRQVLSLIASIDDVNGFLSPV 285 (576)
Q Consensus 210 s---N~~~v~~~i~~~d~~~~~~~~~~~~~K~LG~~w~~~~D~l-~~~~~~~~~~~~~TKR~~ls~va~~yDPlGl~~p~ 285 (576)
. +...+ ++.+++ -|+.=|+.|.|+ .+++.+.
T Consensus 99 ~~~~~~~~~-----~gY~~e------------~gV~~~S~TeTf~a~~l~Id---------------------------- 133 (293)
T PF02781_consen 99 AGEIGGEEV-----PGYREE------------EGVPPDSTTETFAAVKLFID---------------------------- 133 (293)
T ss_dssp EESSSTGGS-----S-GGGS------------TTS-TT----SEEEEEEEB-----------------------------
T ss_pred cCccCCccC-----cccccc------------CCCCCCCCCCccEEEEEEEe----------------------------
Confidence 0 00000 000000 011224556676 3433322
Q ss_pred hhHHHHHHHHHhhhcCCCCCCCCChhHHHHHHHHHHHHhcccceeeeeeeecCCCCcceEEEeecccccceeEEEEeeec
Q psy17439 286 TVYMKMFMQQVWLIKDVSWDSPLPGTLQRKWNRLISEIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGAAYAAVVYLSAL 365 (576)
Q Consensus 286 ~~~~K~~lq~l~~~~~~~Wd~~l~~e~~~~w~~~~~~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~ayga~~Ylk~l 365 (576)
+-.|... |=.+ .=.|+|
T Consensus 134 ---------------n~RW~gV------------------------PF~l------------------------rtGK~L 150 (293)
T PF02781_consen 134 ---------------NWRWAGV------------------------PFYL------------------------RTGKRL 150 (293)
T ss_dssp ---------------STTTTT-------------------------EEEE------------------------EEESSB
T ss_pred ---------------CCcccCC------------------------eeeE------------------------Eccccc
Confidence 1122221 1111 125789
Q ss_pred cCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCCCeEEEEEEeeCCCCCCceeeeeeeccccccc-cccccccccCCcc
Q psy17439 366 NERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDLTYGSRY-KVKVLKCIPPLQL 444 (576)
Q Consensus 366 ~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~-k~~vl~aye~L~~ 444 (576)
+++.+||+|+||++|+.+|.....+|+|+|+|||+++|.+++++|.||.++.+++++|+++|...+ +...++|||+| +
T Consensus 151 ~~k~teI~I~Fk~~~~~~f~~~~~~N~Lvi~iqP~e~i~l~~~~K~Pg~~~~~~~~~L~~~~~~~~~~~~~pdaYErL-l 229 (293)
T PF02781_consen 151 AEKSTEIRIVFKPPPHNLFGENCPPNRLVIRIQPDEGISLRFNIKKPGLSFELEPVELDFSYSDSFEGANSPDAYERL-L 229 (293)
T ss_dssp SS-EEEEEEEE---STTTSCCS----EEEEEEESS-EEEEEEEEE-SSSS-SEEEEEEEEEHHHHTCCCHS--HHHHH-H
T ss_pred ccceEEEEEEEccCChhhccccccCCEEEEecCCccchhhhhccCCCCCCCcceEEEEeeeeccccccccCCchHHHH-H
Confidence 999999999999999999987778999999999999999999999999999999999999998874 46789999997 8
Q ss_pred cceecccccCCCC-CCCcccccccCC------------CCCCCCCCChhHHHHHhhhcCCccc
Q psy17439 445 EDVVLGQYTGDPN-GEGDAKYGYLDD------------KTVPPGSNTPTFASAVLKIKNERWD 494 (576)
Q Consensus 445 ~d~V~Gqy~~~~~-deve~~W~yvde------------~~y~agS~gpT~aa~~l~idn~rW~ 494 (576)
.|+++|+.++|.+ ||++++|+++|+ +.|++|||||..|..++..+++.|.
T Consensus 230 ~d~i~Gd~tlF~r~DEve~sWrivdpIl~~w~~~~~~~~~Y~~GS~GP~~a~~ll~~~g~~W~ 292 (293)
T PF02781_consen 230 LDAIRGDQTLFVRWDEVEASWRIVDPILDAWEEDKPPPEPYPAGSWGPKEADELLARDGRKWR 292 (293)
T ss_dssp HHHHHT-GGGSB-HHHHHHHHHHHHHHHHHHHTT-S-EEEEETTSSS-HHHHHHHHHHT---S
T ss_pred HHHHcCCcccCCCcHHHhccHHHHHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHHHhcCCEec
Confidence 9999999999955 899999998884 5699999999999999999999996
No 17
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=99.86 E-value=2.5e-22 Score=220.03 Aligned_cols=133 Identities=34% Similarity=0.583 Sum_probs=120.9
Q ss_pred eeeccCceeEEEEEeecCCCCCCCCC------CCCcEEEEEecCCCeEEEEEEeeCCCCCCceeeeeeeccccccccccc
Q psy17439 362 LSALNERKADIRIQYTDVPGDIFEGK------TKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKV 435 (576)
Q Consensus 362 lk~l~~~~tEI~I~Fk~~p~~~f~~~------~~~N~Lv~riqP~e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~v 435 (576)
.|+|+++.+||+|+||++|+.+|.+. ..+|+|||||||+|+|.+++++|.||.++.+++++|+++|...++...
T Consensus 419 GKrL~~r~teI~I~FK~~p~~lF~~~~~~~~~~~~N~LviriqP~e~I~l~~~~K~PG~~~~l~~~~L~~~~~~~~~~~~ 498 (573)
T PLN02640 419 GKALHTRRAEIRVQFRHVPGNLYKRNFGTDLDKATNELVLRVQPDEAIYLKINNKVPGLGMRLDRSDLNLLYRARYPREI 498 (573)
T ss_pred cCCCCcCeeEEEEEeccCChhhcccccccccCCCCCEEEEEECCCCcEEEEEeccCCCCCCceEEEeeeeechhhcCCCC
Confidence 47899999999999999999999632 258999999999999999999999999999999999999988776667
Q ss_pred cccccCCcccceecccccCC-CCCCCcccccccCC------------CCCCCCCCChhHHHHHhhhcCCcccc
Q psy17439 436 LKCIPPLQLEDVVLGQYTGD-PNGEGDAKYGYLDD------------KTVPPGSNTPTFASAVLKIKNERWDG 495 (576)
Q Consensus 436 l~aye~L~~~d~V~Gqy~~~-~~deve~~W~yvde------------~~y~agS~gpT~aa~~l~idn~rW~G 495 (576)
++|||+| +.|+++|+.++| +.||++++|+++|+ ..|++|||||..|..++..++++|+.
T Consensus 499 pdAYErL-LlDai~Gd~tlF~r~DEve~aWrivdPIL~~w~~~~~~~~~Y~aGS~GP~~A~~ll~~~g~~W~~ 570 (573)
T PLN02640 499 PDAYERL-LLDAIEGERRLFIRSDELDAAWALFTPLLKELEEKKIIPELYPYGSRGPVGAHYLAAKYNVRWGD 570 (573)
T ss_pred CccHHHH-HHHHHcCCccccCChHHHHHHHHHhHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHhcCCccCC
Confidence 8999998 899999999999 55899999998874 36999999999999999999999975
No 18
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=99.85 E-value=7.2e-22 Score=216.00 Aligned_cols=133 Identities=27% Similarity=0.472 Sum_probs=121.2
Q ss_pred eeeccCceeEEEEEeecCCCCCCCC---CCCCcEEEEEecCCCeEEEEEEeeCCCCCCceeeeeeecccccccccccccc
Q psy17439 362 LSALNERKADIRIQYTDVPGDIFEG---KTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKC 438 (576)
Q Consensus 362 lk~l~~~~tEI~I~Fk~~p~~~f~~---~~~~N~Lv~riqP~e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~a 438 (576)
.|+|+++.+||+|+||++|+.+|.. ...+|+|||||||+|+|++++++|.||.++.+++++|+++|...++...++|
T Consensus 346 GK~L~~~~teI~i~Fk~~p~~~f~~~~~~~~~N~Lvi~iqP~e~i~l~~~~K~pG~~~~~~~~~l~~~~~~~~~~~~~~a 425 (495)
T PRK05722 346 GKRLPKKVTEIVIVFKPPPHNLFEESAEELGPNKLVIRIQPDEGISLRFNAKVPGEGMELRPVKLDFSYSEAFGEASPEA 425 (495)
T ss_pred cCCCCCceEEEEEEEeCCChhhccccccCCCCCEEEEEECCCCceEEEEEecCCCCCCceEEEEEEeECccccCCCCCCc
Confidence 4679999999999999999999964 2368999999999999999999999999999999999999998876667999
Q ss_pred ccCCcccceecccccCC-CCCCCcccccccCC------------CCCCCCCCChhHHHHHhhhcCCcccc
Q psy17439 439 IPPLQLEDVVLGQYTGD-PNGEGDAKYGYLDD------------KTVPPGSNTPTFASAVLKIKNERWDG 495 (576)
Q Consensus 439 ye~L~~~d~V~Gqy~~~-~~deve~~W~yvde------------~~y~agS~gpT~aa~~l~idn~rW~G 495 (576)
||+| +.|+++|+.++| +.||++++|+++|+ ..|++|||||..|..++..++..|+.
T Consensus 426 YErL-l~d~~~Gd~tlF~r~deve~~W~ivdpil~~w~~~~~~~~~Y~~GS~GP~~a~~l~~~~~~~W~~ 494 (495)
T PRK05722 426 YERL-LLDVMLGDQTLFVRRDEVEAAWKWVDPILEAWEADGGPPPPYPAGTWGPEAADALLARDGRSWRE 494 (495)
T ss_pred HHHH-HHHHHcCCccccCCcHHHHHHHHHhHHHHHHHHhCCCCCceeCCCCCChHHHHHHHHhCCCccCC
Confidence 9997 899999999999 45899999998883 56999999999999999999999973
No 19
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=99.84 E-value=1.1e-21 Score=214.03 Aligned_cols=133 Identities=34% Similarity=0.570 Sum_probs=120.8
Q ss_pred eeeccCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCCCeEEEEEEeeCCCCCCceeeeeeeccccccccccccccccC
Q psy17439 362 LSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIPP 441 (576)
Q Consensus 362 lk~l~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~aye~ 441 (576)
.|+|+++.+||+|+||++|+.+|.....+|+|||||||+++|++++++|.||.++.+++++|+++|...++...++||++
T Consensus 335 GK~L~~~~~eI~i~fk~~p~~~f~~~~~~n~Lvi~iqP~e~i~l~~~~k~pG~~~~~~~~~l~~~~~~~~~~~~~~aYer 414 (482)
T TIGR00871 335 GKRLPEKVTEIRIQFKDVPLLLFKQNERNNELVIRIQPDEGVYLKFNAKKPGLNFETRPVKLDFSYGSRFGELLPEAYER 414 (482)
T ss_pred ccccCCCeEEEEeeecCCChhhccCCCCCCEEEEEECCCCeEEEEEeccCCCCCCceeEEEEEeechhccCCCCCCcHHH
Confidence 47799999999999999999999754468999999999999999999999999999999999999988776557899999
Q ss_pred CcccceecccccCC-CCCCCcccccccCC-------------CCCCCCCCChhHHHHHhhhcCCcccc
Q psy17439 442 LQLEDVVLGQYTGD-PNGEGDAKYGYLDD-------------KTVPPGSNTPTFASAVLKIKNERWDG 495 (576)
Q Consensus 442 L~~~d~V~Gqy~~~-~~deve~~W~yvde-------------~~y~agS~gpT~aa~~l~idn~rW~G 495 (576)
| +.|+++|+.++| +.||++++|+++|+ +.|++|||||..|..++..++.+|..
T Consensus 415 L-l~d~~~Gd~tlF~r~deve~~W~ivdpil~~~~~~~~~~~~~Y~~GS~GP~~a~~l~~~~g~~w~~ 481 (482)
T TIGR00871 415 L-LLDALLGDQTLFVRDDEVEEAWRIVTPILEAWAANKGPSPPNYPAGSWGPKEADELIKKDGRSWRK 481 (482)
T ss_pred H-HHHHHCCCccccCChHHHHHHHHHhHHHHHHHhhcCCCCCeeeCCCCCChHHHHHHHHhCCCCCCC
Confidence 7 899999999999 45899999998772 36999999999999999999999984
No 20
>PRK12854 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=99.83 E-value=2.9e-21 Score=209.79 Aligned_cols=127 Identities=18% Similarity=0.235 Sum_probs=114.2
Q ss_pred eeeccCceeEEEEEeecCCCCCCCCC----CCCcEEEEEecCCCeEEEEEEeeCCCCCCceeeeeeecccccc-cccccc
Q psy17439 362 LSALNERKADIRIQYTDVPGDIFEGK----TKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDLTYGSR-YKVKVL 436 (576)
Q Consensus 362 lk~l~~~~tEI~I~Fk~~p~~~f~~~----~~~N~Lv~riqP~e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~-~k~~vl 436 (576)
.|+|+++.+||+|+||++|+.+|... ..+|+|||||||+|+|.+++++|.||.++.+++++|+++|... ++...+
T Consensus 330 GK~L~~~~teI~I~Fk~~p~~~f~~~~~~~~~~N~Lvi~iqP~e~i~l~~~~K~pg~~~~l~~~~l~~~~~~~~~~~~~~ 409 (484)
T PRK12854 330 GKRMAEGQRIISIAFREPPYSMFPAGSVGAQGPDHLTFDLADNSKVSLSFYGKRPGPGMRLDKLSLQFSLKDTGPKGDVL 409 (484)
T ss_pred cCccCCceEEEEEEecCCChhhcccccccCCCCCEEEEEECCCCeEEEEEEecCCCCCCceeEEEEEeeccccccCCCCC
Confidence 47799999999999999999999652 3689999999999999999999999999999999999999877 544568
Q ss_pred ccccCCcccceecccccCC-CCCCCcccccccCC--------CCCCCCCCChhHHHHHhhhc
Q psy17439 437 KCIPPLQLEDVVLGQYTGD-PNGEGDAKYGYLDD--------KTVPPGSNTPTFASAVLKIK 489 (576)
Q Consensus 437 ~aye~L~~~d~V~Gqy~~~-~~deve~~W~yvde--------~~y~agS~gpT~aa~~l~id 489 (576)
+||++| +.|++.|+.++| +.||++++|+++|+ ..|++|||||..|..++..+
T Consensus 410 ~aYErL-l~D~~~Gd~tlF~r~Deve~sW~ivdpil~~~~~~~~Y~~Gs~GP~~a~~l~~~~ 470 (484)
T PRK12854 410 EAYERL-ILDALRGDHTLFTTADGIESLWEVSQPLLEDPPPVKPYAPGSWGPNAIHQLAAPD 470 (484)
T ss_pred CcHHHH-HHHHHcCCccccCChHHHHHHHHhhhHHhhCCCCCCCCCCCCCCHHHHHHHHhcC
Confidence 999997 899999999999 45899999999884 46999999999999999865
No 21
>PTZ00309 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=99.83 E-value=3.3e-21 Score=211.32 Aligned_cols=129 Identities=40% Similarity=0.568 Sum_probs=117.1
Q ss_pred eeeccCceeEEEEEeecCCCCCCCC-CCCCcEEEEEecCCCeEEEEEEeeCCCCCCceeeeeeecccccccccccccccc
Q psy17439 362 LSALNERKADIRIQYTDVPGDIFEG-KTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIP 440 (576)
Q Consensus 362 lk~l~~~~tEI~I~Fk~~p~~~f~~-~~~~N~Lv~riqP~e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~aye 440 (576)
.|+|+++.+||+|+||++|+.+|.+ ...+|+|||||||+|+|++++++|.||+++.+++++|+++|...++...++|||
T Consensus 386 GK~L~~r~teI~I~FK~~p~~~f~~~~~~~N~Lvi~iqP~e~i~l~~~~K~PG~~~~l~~~~l~~~~~~~~~~~~~daYE 465 (542)
T PTZ00309 386 GKALEERYVEIRIQFKGVDEFRPSGDDTQRNELVIRAQPSEAMYLKITAKVPGLSNDLHQTELDLTYKTRYNVRLPDAYE 465 (542)
T ss_pred ccCcCCCeeEEEEEEecCChhhccCCCCCCCEEEEEECCCCeEEEEEeccCCCCCCceeEeeEEEEchhccCCCCCchHH
Confidence 5789999999999999999999965 346899999999999999999999999999999999999999887656789999
Q ss_pred CCcccceecccccCC-CCCCCcccccccCC------------CCCCCCCCChhHHHHHhhhcCC
Q psy17439 441 PLQLEDVVLGQYTGD-PNGEGDAKYGYLDD------------KTVPPGSNTPTFASAVLKIKNE 491 (576)
Q Consensus 441 ~L~~~d~V~Gqy~~~-~~deve~~W~yvde------------~~y~agS~gpT~aa~~l~idn~ 491 (576)
+| +.|+++|+.++| +.||++++|+++|+ ..|++|||||..|..++..+++
T Consensus 466 rL-LlD~~~Gd~tlF~r~DEve~aW~ivdpIL~~w~~~~~~~~~Y~aGS~GP~~a~~l~~~~g~ 528 (542)
T PTZ00309 466 RL-ILDALLGDSTNFVRKDELDVAWRIFTPLLHQIDRGEVKPEPYPFGSRGPKEADELIKKNGF 528 (542)
T ss_pred HH-HHHHHcCCccccCChHHHHHHHHHhHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHhcCC
Confidence 97 899999999999 45899999998883 3699999999999999988876
No 22
>KOG0563|consensus
Probab=99.81 E-value=1.3e-20 Score=198.17 Aligned_cols=135 Identities=41% Similarity=0.646 Sum_probs=123.4
Q ss_pred EEeeeccCceeEEEEEeecCCCCCCCCC--CCCcEEEEEecCCCeEEEEEEeeCCCCCCceeeeeeecccccccc-cccc
Q psy17439 360 VYLSALNERKADIRIQYTDVPGDIFEGK--TKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDLTYGSRYK-VKVL 436 (576)
Q Consensus 360 ~Ylk~l~~~~tEI~I~Fk~~p~~~f~~~--~~~N~Lv~riqP~e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k-~~vl 436 (576)
.-.|+|+++++|||||||.+|+.+|... ..+|+|||||||+|+|++++++|.||+++.+...+||+.|.+++| ....
T Consensus 345 ~aGKal~e~~~eiriqFk~v~g~lf~~~~~~~~neLVirvqP~eavylk~~~k~Pgl~~~~~~~eldl~y~~ry~d~~~p 424 (499)
T KOG0563|consen 345 RAGKALNERKAEIRIQFKAVPGGLFSDVRDCKRNELVIRVQPDEAVYLKINIKQPGLGMQPDESELDLLYSDRYKDVEIP 424 (499)
T ss_pred EcccccccceeEEEEEeeccCCccccCccccccceEEEEecCChheeeEeecCCCCccCCcchhhcCCchhhhcCCccCc
Confidence 3468999999999999999999999854 478999999999999999999999999999999999999999998 8899
Q ss_pred ccccCCcccceecccccCC-CCCCCcccccccC------------CCCCCCCCCChhHHHHHhhh---cCCcccc
Q psy17439 437 KCIPPLQLEDVVLGQYTGD-PNGEGDAKYGYLD------------DKTVPPGSNTPTFASAVLKI---KNERWDG 495 (576)
Q Consensus 437 ~aye~L~~~d~V~Gqy~~~-~~deve~~W~yvd------------e~~y~agS~gpT~aa~~l~i---dn~rW~G 495 (576)
+|||+| +.|+++|+.+.| +.||++++|+..+ +..|+.||.||+.|..++.. .+..|.+
T Consensus 425 daYE~L-i~d~i~G~~~~FvrsDEl~~aW~iftPlL~~i~~~~~~p~~Y~~GsrGP~~a~e~~~k~~~~~~~w~~ 498 (499)
T KOG0563|consen 425 DAYERL-ILDAIRGDQTHFVRSDELEAAWKIFTPLLEEIEKKKPKPEPYPYGSRGPKEADELMKKHGTHGYKWPD 498 (499)
T ss_pred chHHHH-HHHHHcCCccceeehHHHHHHHHhccHHHHHhhccCCCCcccCCCCCCchhHHHHHHhccCCCccCCC
Confidence 999997 899999999999 5589999999877 35799999999999999988 6777766
No 23
>PLN02539 glucose-6-phosphate 1-dehydrogenase
Probab=99.81 E-value=1.1e-20 Score=205.60 Aligned_cols=132 Identities=36% Similarity=0.578 Sum_probs=117.6
Q ss_pred eeeccCceeEEEEEeecCCCCCCCCC-CCCcEEEEEecCCCeEEEEEEeeCCCCCCceeeeeeecccccccc-ccccccc
Q psy17439 362 LSALNERKADIRIQYTDVPGDIFEGK-TKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDLTYGSRYK-VKVLKCI 439 (576)
Q Consensus 362 lk~l~~~~tEI~I~Fk~~p~~~f~~~-~~~N~Lv~riqP~e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k-~~vl~ay 439 (576)
.|+|+++.+||+|+||++|+.+|... ..+|+|||||||+|+|.+++++|.||+++.+++++|+++|...+. ...++||
T Consensus 342 GK~L~~~~teI~I~Fk~~p~~~f~~~~~~~N~Lvi~iqP~e~i~l~~~~k~pG~~~~~~~~~l~~~~~~~~~~~~~~~aY 421 (491)
T PLN02539 342 GKALDSRKAEIRVQFKDVPGDIFKCQKQGRNEFVIRLQPSEAMYMKLTVKQPGLEMSTVQSELDLSYGQRYQDVVIPEAY 421 (491)
T ss_pred cCCCCcCeeEEEEEeccCChhhcccCCCCCCEEEEEECCCCcEEEEEeccCCCCCCceeEeeeeeechhhcCCCCCCCcH
Confidence 47899999999999999999999643 368999999999999999999999999999999999999987763 4568999
Q ss_pred cCCcccceecccccCCC-CCCCcccccccCC------------CCCCCCCCChhHHHHHhhhcCCccc
Q psy17439 440 PPLQLEDVVLGQYTGDP-NGEGDAKYGYLDD------------KTVPPGSNTPTFASAVLKIKNERWD 494 (576)
Q Consensus 440 e~L~~~d~V~Gqy~~~~-~deve~~W~yvde------------~~y~agS~gpT~aa~~l~idn~rW~ 494 (576)
++| +.|+++|+.++|. .||++++|+++++ ..|++|||||..|..++..++++-.
T Consensus 422 ErL-l~d~~~Gd~tlF~r~deve~aW~i~~pil~~w~~~~~~~~~Y~~GS~GP~~a~~l~~~~g~~~~ 488 (491)
T PLN02539 422 ERL-ILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDAGKVKPIPYKQGSRGPAEADELLEKAGYVQT 488 (491)
T ss_pred HHH-HHHHHCCCccccCChHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHhcCCccC
Confidence 997 8999999999994 5899999998773 4699999999999999998887643
No 24
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=99.81 E-value=1.9e-20 Score=203.81 Aligned_cols=131 Identities=31% Similarity=0.490 Sum_probs=118.2
Q ss_pred eeeccCceeEEEEEeecCCCCCCCCC--CCCcEEEEEecCCCeEEEEEEeeCCCCCCceeeeeeeccccccccccccccc
Q psy17439 362 LSALNERKADIRIQYTDVPGDIFEGK--TKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCI 439 (576)
Q Consensus 362 lk~l~~~~tEI~I~Fk~~p~~~f~~~--~~~N~Lv~riqP~e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~ay 439 (576)
.|+|+++.+||+|+||++|+.+|... ..+|+|||||||+|+|++++++|.||.++.+++++|+++|.. ....++||
T Consensus 334 GK~L~~~~~eI~i~fk~~p~~~f~~~~~~~~n~Lvi~iqP~e~i~l~~~~k~pg~~~~~~~~~l~~~~~~--~~~~~~aY 411 (482)
T PRK12853 334 GKRLAERRTEIVITFKPVPHALFRGTGVEPPNRLVIRLQPDEGISLELNVKRPGPGMRLRPVELDADYAD--DERPLEAY 411 (482)
T ss_pred cCCCCCceEEEEEEEcCCChhhccCccCCCCCEEEEEECCCCcEEEEEEecCCCCCCceEEEeEEeEccC--CCCCCCcH
Confidence 47899999999999999999999653 358999999999999999999999999999999999999985 34568999
Q ss_pred cCCcccceecccccCC-CCCCCcccccccCC------------CCCCCCCCChhHHHHHhhhcCCcccc
Q psy17439 440 PPLQLEDVVLGQYTGD-PNGEGDAKYGYLDD------------KTVPPGSNTPTFASAVLKIKNERWDG 495 (576)
Q Consensus 440 e~L~~~d~V~Gqy~~~-~~deve~~W~yvde------------~~y~agS~gpT~aa~~l~idn~rW~G 495 (576)
++| +.|+++|+.++| +.||++++|+++|+ ..|++|||||..|..++..++..|+.
T Consensus 412 erL-l~d~~~Gd~tlF~r~deve~~W~i~dpil~~~~~~~~~~~~Y~~GS~GP~~a~~l~~~~~~~W~~ 479 (482)
T PRK12853 412 ERL-LLDVLRGDPTLFVRADEVEAAWRIVDPVLDAWAADPVPPHEYPAGSWGPAAADALLARDGRGWRE 479 (482)
T ss_pred HHH-HHHHHcCCccccCCcHHHHHHHHHhHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHhcCCccCC
Confidence 997 899999999999 45799999998773 46999999999999999999999983
No 25
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs. Phylogenetic analysis suggests that ZFERV belongs to a distinct group of retroviruses.
Probab=99.17 E-value=1e-10 Score=115.44 Aligned_cols=165 Identities=15% Similarity=0.185 Sum_probs=122.4
Q ss_pred ccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccC-CCCcC-eEEEEEeCccccCccc
Q psy17439 8 EKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWN-RENIA-SVMITFKEPFGTQGRG 85 (576)
Q Consensus 8 Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n-~~~~~-kvriv~d~s~~~~~rg 85 (576)
-||+-...+-.+++.+++.+......|... ..+|..|++- ++.-+ +.|++.|.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~ll~~G~I~~~-----------------~s~~~sp~~~V~Kk~g~~~R~~vD~r~------ 60 (210)
T cd03715 4 QKQYPLPREAREGITPHIQELLEAGILVPC-----------------QSPWNTPILPVKKPGGNDYRMVQDLRL------ 60 (210)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHCCCeECC-----------------CCCCCCceEEEEeCCCCcceEEEEhhh------
Confidence 367777888888888888877777776532 3567777663 33344 9999999863
Q ss_pred ccccccCcccchhhHHHHHHHHHHh-ccCCcccCHHHHhh--cccCCCCCCccceEEEeccCCCCCceEEEEeeeccCCC
Q psy17439 86 GYFDEFGIIRDVMQNHLLQILSLVA-MEKPATIHPDDIRN--EKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFGLP 162 (576)
Q Consensus 86 ~sln~~l~~gp~l~~~Ll~iL~r~r-~~~~~~~~~~DI~~--~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG~~ 162 (576)
||.....-.....++-.+|.... ..++. ..-|++. +++.+.|++|..+.|-|.. ..|+|+++|||.+
T Consensus 61 --lN~~~~~~~~~~p~~~~~l~~l~~~~~~~--s~lDl~~af~~i~l~~~~~~~taf~~~~------~~y~~~~lp~Gl~ 130 (210)
T cd03715 61 --VNQAVLPIHPAVPNPYTLLSLLPPKHQWY--TVLDLANAFFSLPLAPDSQPLFAFEWEG------QQYTFTRLPQGFK 130 (210)
T ss_pred --hhhcccccCcCCCcHHHHHHHhccCCeEE--EEeeccCeEEEEEcccccEEeEEEEECC------eeEEEEEEecccc
Confidence 45443322222234444544443 23443 3448988 4899999999999999863 6799999999999
Q ss_pred CCHHhhhc------------------ccceeeeccccccHHHHHHHHHHHHHHHhhcCCce
Q psy17439 163 PSPYQAQR------------------SIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVL 205 (576)
Q Consensus 163 ~SP~ll~~------------------~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~l 205 (576)
.||.++++ ..|+||++..++|.+|..+..+++...|++.||.+
T Consensus 131 ~sp~~f~~~~~~~l~~~~~~~~~~~~~~Y~DDili~s~~~~e~~~~l~~v~~~l~~~gl~l 191 (210)
T cd03715 131 NSPTLFHEALARDLAPFPLEHEGTILLQYVDDLLLAADSEEDCLKGTDALLTHLGELGYKV 191 (210)
T ss_pred CcHHHHHHHHHHHHHHHHhhCCCeEEEEECCcEEEecCCHHHHHHHHHHHHHHHHHCCCCc
Confidence 99987762 36999999999999999999999999999999966
No 26
>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs). RTs catalyze the conversion of single-stranded RNA into double-stranded viral DNA for integration into host chromosomes. Proteins in this subfamily contain long terminal repeats (LTRs) and are multifunctional enzymes with RNA-directed DNA polymerase, DNA directed DNA polymerase, and ribonuclease hybrid (RNase H) activities. The viral RNA genome enters the cytoplasm as part of a nucleoprotein complex, and the process of reverse transcription generates in the cytoplasm forming a linear DNA duplex via an intricate series of steps. This duplex DNA is colinear with its RNA template, but contains terminal duplications known as LTRs that are not present in viral RNA. It has been proposed that two specialized template switches, known as strand-transfer reactions or "jumps", are required to generate the LTRs.
Probab=98.87 E-value=5.5e-09 Score=103.61 Aligned_cols=166 Identities=16% Similarity=0.131 Sum_probs=117.3
Q ss_pred cCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccC-CCCcCeEEEEEeCccccCccccc
Q psy17439 9 KPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWN-RENIASVMITFKEPFGTQGRGGY 87 (576)
Q Consensus 9 kpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n-~~~~~kvriv~d~s~~~~~rg~s 87 (576)
|.+-...+.-+++.+++.+..+...|... ..+|-.|+|- ++.-.+.|++.|.+ .
T Consensus 5 ~~~p~~~~~~~~~~~~i~~ll~~g~I~~~-----------------~s~~~sp~~~v~K~~g~~R~~~D~r--------~ 59 (213)
T cd01645 5 KQWPLTEEKLEALTELVTEQLKEGHIEPS-----------------TSPWNTPVFVIKKKSGKWRLLHDLR--------A 59 (213)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCceecC-----------------CCCCcCcEEEEEcCCCCeEEEechH--------H
Confidence 44455556666677766666666655532 1457777764 56678999998875 3
Q ss_pred ccccCcccc----hhhHHHHHHHHHHhccCCcccCHHHHhh--cccCCCCCCccceEEEeccCCC-CCceEEEEeeeccC
Q psy17439 88 FDEFGIIRD----VMQNHLLQILSLVAMEKPATIHPDDIRN--EKVHPCPEDRIHQHILWRPDPT-QEVKEFELKTVTFG 160 (576)
Q Consensus 88 ln~~l~~gp----~l~~~Ll~iL~r~r~~~~~~~~~~DI~~--~~v~v~~edr~~~rflW~~~~~-~~~~~yr~~rv~FG 160 (576)
||.....-. .+. +...| ...++. +.-|+++ +++.+.|+|+..+.|.|..... ..-..|+|+++|||
T Consensus 60 lN~~~~~~~~~~~~~p--~~~~l---~~~~~~--s~lDl~~af~~i~l~~~~~~~taf~~~~~~~~~~~~~~~~~~lP~G 132 (213)
T cd01645 60 VNAQTQDMGALQPGLP--HPAAL---PKGWPL--IVLDLKDCFFSIPLHPDDRERFAFTVPSINNKGPAKRYQWKVLPQG 132 (213)
T ss_pred HhhhcccccccCCCCC--ChHHc---CCCceE--EEEEccCcEEEeeeccCCcceeEEEeccccCCCCCceEEEEEeCCC
Confidence 444432210 111 11111 223333 4569988 4899999999999999964222 24678999999999
Q ss_pred CCCCHHhhhc------------------ccceeeeccccccHHHHHHHHHHHHHHHhhcCCcee
Q psy17439 161 LPPSPYQAQR------------------SIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLR 206 (576)
Q Consensus 161 ~~~SP~ll~~------------------~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lr 206 (576)
.+.||.++++ ..||||++..+.+.+|+.+..+.+.+.+++.||.+.
T Consensus 133 l~~SP~~f~~~m~~~l~~~~~~~~~~~~~~Y~DDili~s~~~~~~~~~l~~v~~~l~~~gl~ln 196 (213)
T cd01645 133 MKNSPTICQSFVAQALEPFRKQYPDIVIYHYMDDILIASDLEGQLREIYEELRQTLLRWGLTIP 196 (213)
T ss_pred CcChHHHHHHHHHHHHHHHHHHCCCeEEEEEcCCEEEEcCCHHHHHHHHHHHHHHHHHCCCEeC
Confidence 9999998761 379999999999999999999999999999999763
No 27
>cd01647 RT_LTR RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of retroelements. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs are present in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and Caulimoviruses.
Probab=98.86 E-value=7.1e-09 Score=96.91 Aligned_cols=133 Identities=18% Similarity=0.185 Sum_probs=106.6
Q ss_pred cccccccC-CCCcCeEEEEEeCccccCcccccccccCcccchhhHHHHHHHHHHhccCCcccCHHHHhh--cccCCCCCC
Q psy17439 57 RIFTPTWN-RENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRN--EKVHPCPED 133 (576)
Q Consensus 57 ~~~~p~~n-~~~~~kvriv~d~s~~~~~rg~sln~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~--~~v~v~~ed 133 (576)
.+..|++- ++.-.|.|++.|. | .||++....+..+..+-.++..++...++ ..-|+.+ .++.+.+++
T Consensus 9 ~~~~p~~~v~k~~~k~R~~~D~------r--~ln~~~~~~~~~~p~i~~~~~~~~~~~~~--~~~D~~~~~~~i~l~~~~ 78 (177)
T cd01647 9 PYASPVVVVKKKDGKLRLCVDY------R--KLNKVTIKDRYPLPTIDELLEELAGAKVF--SKLDLRSGYHQIPLAEES 78 (177)
T ss_pred CCCCceEEEECCCCCEEEEEcC------H--HHhcccCCCCCCCCCHHHHHHHhhcCcEE--EecccccCcceeeeccCC
Confidence 34455443 4555599999984 3 68888777777777777887777655544 4468887 478899999
Q ss_pred ccceEEEeccCCCCCceEEEEeeeccCCCCCHHhhh--------------cccceeeeccccccHHHHHHHHHHHHHHHh
Q psy17439 134 RIHQHILWRPDPTQEVKEFELKTVTFGLPPSPYQAQ--------------RSIYVDDIVSGAVSISAAKTLCNELSSLLG 199 (576)
Q Consensus 134 r~~~rflW~~~~~~~~~~yr~~rv~FG~~~SP~ll~--------------~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~ 199 (576)
+.++.|.|.. ..|+++++|||++.||..++ -..||||++..+++.+|+....+.+...++
T Consensus 79 ~~~~~~~~~~------~~~~~~~~p~G~~~s~~~~~~~~~~~l~~~~~~~~~~y~DDi~i~~~~~~~~~~~~~~~~~~l~ 152 (177)
T cd01647 79 RPKTAFRTPF------GLYEYTRMPFGLKNAPATFQRLMNKILGDLLGDFVEVYLDDILVYSKTEEEHLEHLREVLERLR 152 (177)
T ss_pred hhhceeecCC------CccEEEEecCCCccHHHHHHHHHHhhhccccccccEEEecCccccCCCHHHHHHHHHHHHHHHH
Confidence 9999998854 45899999999999998775 258999999999999999999999999999
Q ss_pred hcCCce
Q psy17439 200 AEGFVL 205 (576)
Q Consensus 200 ~~gf~l 205 (576)
+.||.+
T Consensus 153 ~~~~~~ 158 (177)
T cd01647 153 EAGLKL 158 (177)
T ss_pred HcCCEe
Confidence 999865
No 28
>cd03714 RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons. Members of the subfamily include the Dictyostelium DIRS-1, Volvox carteri kangaroo, and Panagrellus redivivus PAT elements. These elements differ from LTR and conventional non-LTR retrotransposons. They contain split direct repeat (SDR) termini, and have been proposed to integrate via double-stranded closed-circle DNA intermediates assisted by an encoded recombinase which is similar to gamma-site-specific integrase.
Probab=98.58 E-value=1.2e-07 Score=85.27 Aligned_cols=79 Identities=27% Similarity=0.487 Sum_probs=64.8
Q ss_pred HHhh--cccCCCCCCccceEEEeccCCCCCceEEEEeeeccCCCCCHHhhhc----------------ccceeeeccccc
Q psy17439 121 DIRN--EKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFGLPPSPYQAQR----------------SIYVDDIVSGAV 182 (576)
Q Consensus 121 DI~~--~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG~~~SP~ll~~----------------~~YVDD~~~~~~ 182 (576)
|+.. +||.+.|+++..+.|.|.. ..|+|+++|||.+.||..+++ ..|+||++..+.
T Consensus 2 D~~~ay~~i~l~~~~~~~~af~~~~------~~~~~~~mp~Gl~~sp~~f~~~~~~i~~~~~~~~~~v~~Y~DDili~~~ 75 (119)
T cd03714 2 DLKDAYFHIPILPRSRDLLGFAWQG------ETYQFKALPFGLSLAPRVFTKVVEALLAPLRLLGVRIFSYLDDLLIIAS 75 (119)
T ss_pred chhhceEEEecCCCCcceeeEEECC------CcEEEEecCCcccchHHHHHHHHHHHHHHhhcCCeEEEEEecCeEEEeC
Confidence 5665 4899999999999999853 469999999999999987762 369999999888
Q ss_pred cHHHHHHHHHHHHH-HHhhcCCce
Q psy17439 183 SISAAKTLCNELSS-LLGAEGFVL 205 (576)
Q Consensus 183 ~~~ea~~~~~~~~~-~~~~~gf~l 205 (576)
|+++..+....+++ ++++.||.+
T Consensus 76 ~~~~~~~~~~~l~~~~l~~~gl~l 99 (119)
T cd03714 76 SIKTSEAVLRHLRATLLANLGFTL 99 (119)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcc
Confidence 77666666666666 689999965
No 29
>cd00304 RT_like RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=97.40 E-value=0.00018 Score=61.60 Aligned_cols=53 Identities=32% Similarity=0.294 Sum_probs=46.0
Q ss_pred eccCCCCCHHhhh------------------cccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeeec
Q psy17439 157 VTFGLPPSPYQAQ------------------RSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWAS 210 (576)
Q Consensus 157 v~FG~~~SP~ll~------------------~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~s 210 (576)
+|+|.+.||++++ ...||||++..+.+. ++.+....+.+.+++.|+++...-+
T Consensus 12 lPqG~~~Sp~l~~~~~~~l~~~~~~~~~~~~~~~Y~DD~~i~~~~~-~~~~~~~~l~~~l~~~gl~ln~~Kt 82 (98)
T cd00304 12 LPQGSPLSPALANLYMEKLEAPILKQLLDITLIRYVDDLVVIAKSE-QQAVKKRELEEFLARLGLNLSDEKT 82 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHhcCCceEEEeeCcEEEEeCcH-HHHHHHHHHHHHHHHcCcEEChhee
Confidence 8999999999886 257999999999888 8999999999999999998754433
No 30
>PF00078 RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR000477 The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons. The enzyme catalysing polymerisation is an RNA-directed DNA-polymerase, or reverse trancriptase (RT) (2.7.7.49 from EC). Reverse transcriptase occurs in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. Retroviral reverse transcriptase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The discovery of retroelements in the prokaryotes raises intriguing questions concerning their roles in bacteria and the origin and evolution of reverse transcriptases and whether the bacterial reverse transcriptases are older than eukaryotic reverse transcriptases [].; GO: 0003723 RNA binding, 0003964 RNA-directed DNA polymerase activity, 0006278 RNA-dependent DNA replication; PDB: 1MU2_B 3RWE_C 3DU6_B 3DU5_A 3KYL_A 2WOM_B 1DTQ_A 2OPS_A 3FFI_A 1VRU_B ....
Probab=97.24 E-value=0.00044 Score=66.90 Aligned_cols=91 Identities=19% Similarity=0.119 Sum_probs=72.0
Q ss_pred cccCHHHHhhc--ccCCCCCCccceEEEeccC-----------------CCC-CceEEEEeeeccCCCCCHHhhh-----
Q psy17439 115 ATIHPDDIRNE--KVHPCPEDRIHQHILWRPD-----------------PTQ-EVKEFELKTVTFGLPPSPYQAQ----- 169 (576)
Q Consensus 115 ~~~~~~DI~~~--~v~v~~edr~~~rflW~~~-----------------~~~-~~~~yr~~rv~FG~~~SP~ll~----- 169 (576)
..++..||+++ .|..++-.+..+++.+.+. .+. .........+|+|..+||++++
T Consensus 64 ~~~~~~Di~~~f~sI~~~~l~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~glpqG~~~S~~l~~~~l~~ 143 (214)
T PF00078_consen 64 LYFLKLDISKAFDSIPHHRLLRKLKRFGVPKKLIRLIQNLLSDRTAKVYLDGDLSPYFQKRGLPQGSPLSPLLFNIYLDD 143 (214)
T ss_dssp SEEEEEECCCCGGGSBBHTTTGGGGEEEEECCSCHHHHHHHHHHHH-EECGCSSSEEEEESBS-TTSTCHHHHHHHHHHH
T ss_pred cccceeccccccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccc
Confidence 34456799885 5666677777888776643 011 1678899999999999999876
Q ss_pred --------------cccceeeeccccccHHHHHHHHHHHHHHHhhcCCce
Q psy17439 170 --------------RSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVL 205 (576)
Q Consensus 170 --------------~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~l 205 (576)
...||||++..+.+.+++.+..+.+.+.+++.|+.+
T Consensus 144 l~~~~~~~~~~~~~~~rY~DD~~i~~~~~~~~~~~~~~i~~~~~~~gl~l 193 (214)
T PF00078_consen 144 LDRELQQELNPDISYLRYADDILIISKSKEELQKILEKISQWLEELGLKL 193 (214)
T ss_dssp HHHHHHHHS-TTSEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHTTSBC
T ss_pred ccccccccccccccceEeccccEEEECCHHHHHHHHHHHHHHHHHCCCEE
Confidence 158999999999999999999999999999999865
No 31
>cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=95.48 E-value=0.027 Score=55.81 Aligned_cols=74 Identities=24% Similarity=0.313 Sum_probs=58.0
Q ss_pred eeccCCCCCHHhhh--------------------cccceeeeccccccHH--HHHHHHHHHHHHHhhcCCceeeeeccch
Q psy17439 156 TVTFGLPPSPYQAQ--------------------RSIYVDDIVSGAVSIS--AAKTLCNELSSLLGAEGFVLRKWASSHP 213 (576)
Q Consensus 156 rv~FG~~~SP~ll~--------------------~~~YVDD~~~~~~~~~--ea~~~~~~~~~~~~~~gf~lrk~~sN~~ 213 (576)
.+|-|...||+|++ ..-||||++..+++.+ ++.++...+...+++.|+.+. .
T Consensus 103 GlpQG~~lSp~Lanl~l~~~d~~l~~~~~~~~~~~~RYaDD~~i~~~~~~~~~~~~~~~~i~~~l~~~gL~ln-----~- 176 (214)
T cd03487 103 HLPQGAPTSPALSNLVFRKLDERLSKLAKSNGLTYTRYADDITFSSNKKLKEALDKLLEIIRSILSEEGFKIN-----K- 176 (214)
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeccEEEEccccchhHHHHHHHHHHHHHHHCCceeC-----C-
Confidence 78999999999876 2589999999999988 899999999999999998762 1
Q ss_pred hhccCCCCcccCCCCcCCCCccceEeeeeeccC
Q psy17439 214 EVLSDLPVEDCEKPHMLGSNESIKVLGIRWCPK 246 (576)
Q Consensus 214 ~v~~~i~~~d~~~~~~~~~~~~~K~LG~~w~~~ 246 (576)
.|+.+........+||+.-+..
T Consensus 177 -----------~Kt~i~~~~~~~~~~G~~i~~~ 198 (214)
T cd03487 177 -----------SKTRISSKGSRQIVTGLVVNNG 198 (214)
T ss_pred -----------CceEEccCCCCcEEEEEEEeCC
Confidence 1222333344568999997654
No 32
>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT). Telomerase is a ribonucleoprotein (RNP) that synthesizes telomeric DNA repeats. The telomerase RNA subunit provides the template for synthesis of these repeats. The catalytic subunit of RNP is known as telomerase reverse transcriptase (TERT). The reverse transcriptase (RT) domain is located in the C-terminal region of the TERT polypeptide. Single amino acid substitutions in this region lead to telomere shortening and senescence. Telomerase is an enzyme that, in certain cells, maintains the physical ends of chromosomes (telomeres) during replication. In somatic cells, replication of the lagging strand requires the continual presence of an RNA primer approximately 200 nucleotides upstream, which is complementary to the template strand. Since there is a region of DNA less than 200 base pairs from the end of the chromosome where this is not possible, the chromosome is continually shortened. However, a surplus of repetitive DNA at
Probab=94.94 E-value=0.033 Score=50.11 Aligned_cols=50 Identities=20% Similarity=0.111 Sum_probs=43.3
Q ss_pred eeccCCCCCHHhhh----------------------cccceeeeccccccHHHHHHHHHHHHHHH-hhcCCce
Q psy17439 156 TVTFGLPPSPYQAQ----------------------RSIYVDDIVSGAVSISAAKTLCNELSSLL-GAEGFVL 205 (576)
Q Consensus 156 rv~FG~~~SP~ll~----------------------~~~YVDD~~~~~~~~~ea~~~~~~~~~~~-~~~gf~l 205 (576)
.+|=|...||.|++ ...|+||++..+.+.+++.+..+.++..+ ++.|+.+
T Consensus 19 GlpQG~~lSp~L~nl~l~~l~~~~~~~~~~~~~~~~~~rYaDD~li~~~~~~~~~~~~~~l~~~l~~~~gl~i 91 (119)
T cd01648 19 GIPQGSPLSSLLCSLYYADLENKYLSFLDVIDKDSLLLRLVDDFLLITTSLDKAIKFLNLLLRGFINQYKTFV 91 (119)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhcccCCCCceEEEEeCcEEEEeCCHHHHHHHHHHHHHhhHHhhCeEE
Confidence 37899999998864 14799999999999999999999999988 8889854
No 33
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=93.72 E-value=0.067 Score=50.34 Aligned_cols=53 Identities=30% Similarity=0.329 Sum_probs=47.4
Q ss_pred EEeeeccCCCCCHHhhh------------------cccceeeeccccccHHHHHHHHHHHHHHHhhcCCce
Q psy17439 153 ELKTVTFGLPPSPYQAQ------------------RSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVL 205 (576)
Q Consensus 153 r~~rv~FG~~~SP~ll~------------------~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~l 205 (576)
....+|-|...||.+++ ..-||||++..+++.+.+.+..+.+...+++.|+++
T Consensus 50 ~~~GlpqG~~lS~~L~~~~l~~~d~~i~~~~~~~~~~RY~DD~~i~~~~~~~~~~~~~~i~~~l~~~gL~l 120 (158)
T cd01646 50 QTNGLPIGPLTSRFLANIYLNDVDHELKSKLKGVDYVRYVDDIRIFADSKEEAEEILEELKEFLAELGLSL 120 (158)
T ss_pred CCceEccCcchHHHHHHHHHHHHHHHHHhccCCceEEEecCcEEEEcCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 34568999999999886 258999999999999999999999999999999977
No 34
>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).
Probab=91.61 E-value=0.22 Score=48.80 Aligned_cols=51 Identities=27% Similarity=0.300 Sum_probs=44.3
Q ss_pred eeeccCCCCCHHhhh-----------c------------------ccceeeeccccccHHHHHHHHHHHHHHHhhcCCce
Q psy17439 155 KTVTFGLPPSPYQAQ-----------R------------------SIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVL 205 (576)
Q Consensus 155 ~rv~FG~~~SP~ll~-----------~------------------~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~l 205 (576)
..+|-|...||+|++ + .-|+||++..+++.+++.+..+.+...+++.|+.+
T Consensus 125 ~GlpqG~~lSp~L~~~~l~~ld~~l~~~~~~~~~~~~~~~~~~~~~rY~DD~~i~~~~~~~~~~~~~~i~~~~~~~gl~l 204 (226)
T cd01651 125 KGTPQGGVISPLLANIYLHELDKFVEEKLKEYYDTSDPKFRRLRYVRYADDFVIGVRGPKEAEEIKELIREFLEELGLEL 204 (226)
T ss_pred CCcCCCccHHHHHHHHHHHHHHHHHHHhhhhcccccccccCceEEEEecCceEEecCCHHHHHHHHHHHHHHHHHcCCee
Confidence 458999999999865 1 24999999999999999999999999999999865
No 35
>cd01650 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities.
Probab=89.31 E-value=0.53 Score=45.98 Aligned_cols=50 Identities=28% Similarity=0.286 Sum_probs=43.5
Q ss_pred eeccCCCCCHHhhh------------------------cccceeeeccccccHH-HHHHHHHHHHHHHhhcCCce
Q psy17439 156 TVTFGLPPSPYQAQ------------------------RSIYVDDIVSGAVSIS-AAKTLCNELSSLLGAEGFVL 205 (576)
Q Consensus 156 rv~FG~~~SP~ll~------------------------~~~YVDD~~~~~~~~~-ea~~~~~~~~~~~~~~gf~l 205 (576)
.+|-|...||++++ ...|+||++..+.+.+ .+.+..+.+...+.+.|+.+
T Consensus 106 GipQG~~lSp~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~yaDD~~i~~~~~~~~~~~~~~~~~~~~~~~gl~i 180 (220)
T cd01650 106 GVRQGDPLSPLLFNLALDDLLRLLNKEEEIKLGGPGITHLAYADDIVLFSEGKSRKLQELLQRLQEWSKESGLKI 180 (220)
T ss_pred CCccCCcccHHHHHHHHHHHHHHHHhhccccCCCCccceEEeccceeeeccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 88999999998765 1369999999888888 99999999999999999855
No 36
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=65.24 E-value=5.5 Score=35.91 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhccCCCcceEeecc--chhHHHHHhhhhhhcc
Q psy17439 16 DSSRHLSNHLGALFPEEQIYRIDH--YLGKEMVQNLMTMRFG 55 (576)
Q Consensus 16 ~sa~~l~~~~~~~~~e~~i~ridh--ylgk~~v~~~~~~r~~ 55 (576)
.||++|...|-+.-...-|-++|| |||+|....=++|+++
T Consensus 72 rTAKeL~~~I~e~~~~~~vs~ldHA~YLGrEL~KAE~AL~~G 113 (119)
T PF14251_consen 72 RTAKELYITIIEEQRPCLVSRLDHAAYLGRELQKAEIALRSG 113 (119)
T ss_pred CCHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHcC
Confidence 589999999987766777889999 7999999999999876
No 37
>PF07727 RVT_2: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR013103 A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. This entry includes reverse transcriptases not recognised by IPR000477 from INTERPRO [].
Probab=59.00 E-value=3.5 Score=42.00 Aligned_cols=49 Identities=29% Similarity=0.319 Sum_probs=38.4
Q ss_pred ceEEEEeeeccCCCCCHHhhh--------------------------------cccceeeeccccccHHHHHHHHHHHHH
Q psy17439 149 VKEFELKTVTFGLPPSPYQAQ--------------------------------RSIYVDDIVSGAVSISAAKTLCNELSS 196 (576)
Q Consensus 149 ~~~yr~~rv~FG~~~SP~ll~--------------------------------~~~YVDD~~~~~~~~~ea~~~~~~~~~ 196 (576)
=.++++.+--+|++-||.+-. =.+||||++..+.+.+++.++.++++.
T Consensus 112 ~~v~~L~kaLYGLKQa~r~W~~~l~~~L~~~GF~~~~~D~clfi~~~~~~~~ii~vYVDDili~~~~~~~i~~~~~~l~~ 191 (246)
T PF07727_consen 112 GKVCRLKKALYGLKQAPRLWYKTLDKFLKKLGFKQSKADPCLFIKKSGDGFIIILVYVDDILIAGPSEEEIEEFKKELKK 191 (246)
T ss_pred cccccccccceecccccchhhhhcccccchhhhhcccccccccccccccccccccccccccccccccccceecccccccc
Confidence 457888999999999997532 049999999999999888777666544
Q ss_pred H
Q psy17439 197 L 197 (576)
Q Consensus 197 ~ 197 (576)
-
T Consensus 192 ~ 192 (246)
T PF07727_consen 192 K 192 (246)
T ss_pred c
Confidence 3
No 38
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs). An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=33.11 E-value=45 Score=35.74 Aligned_cols=53 Identities=9% Similarity=0.015 Sum_probs=43.8
Q ss_pred EEeeeccCCCCCHHhhh-----------c-------ccceeeeccccccHHHHHHHHHHHHHHHhhcCCcee
Q psy17439 153 ELKTVTFGLPPSPYQAQ-----------R-------SIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLR 206 (576)
Q Consensus 153 r~~rv~FG~~~SP~ll~-----------~-------~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lr 206 (576)
|=.-+|-|-..||.|++ + .=|.||++.- .+.++|.+..+.+.+.++..|..+.
T Consensus 80 r~rGtPqGgviSplLaNiyL~~lD~~v~~~~~g~~l~RYaDD~vi~-~~~~~a~~aw~~i~~fl~~lGLelN 150 (346)
T cd01709 80 RKRGTPMSHALSDVFGELVLFCLDFAVNQATDGGLLYRLHDDLWFW-GQPETCAKAWKAIQEFAKVMGLELN 150 (346)
T ss_pred cCCccCCCchhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCeEEEE-cCHHHHHHHHHHHHHHHHHcCceec
Confidence 33578999999999887 1 3699999987 4468888888899999999998774
No 39
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=31.16 E-value=30 Score=30.59 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=12.5
Q ss_pred eEEEeecccc------cceeEEEE
Q psy17439 344 DLIGFGDASG------AAYAAVVY 361 (576)
Q Consensus 344 ~L~~F~DAS~------~ayga~~Y 361 (576)
++.+|||||- .++|.|+|
T Consensus 3 ~~~iytDgS~~~~~~~~~~g~v~~ 26 (132)
T PF00075_consen 3 AIIIYTDGSCRPNPGKGGAGYVVW 26 (132)
T ss_dssp SEEEEEEEEECTTTTEEEEEEEEE
T ss_pred cEEEEEeCCccCCCCceEEEEEEE
Confidence 5889999993 35666443
No 40
>KOG1005|consensus
Probab=27.09 E-value=37 Score=40.21 Aligned_cols=59 Identities=22% Similarity=0.108 Sum_probs=42.7
Q ss_pred EEEEeeeccCCCCCHHhhh---------------c------ccceeeeccccccHHHHHHHHHHHHHHHhhcCC--ceee
Q psy17439 151 EFELKTVTFGLPPSPYQAQ---------------R------SIYVDDIVSGAVSISAAKTLCNELSSLLGAEGF--VLRK 207 (576)
Q Consensus 151 ~yr~~rv~FG~~~SP~ll~---------------~------~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf--~lrk 207 (576)
-.+-+.+|=|...|-.|.. + --||||.++-+-+.++|.+..+.++..+.+++| |.+|
T Consensus 629 yvq~~GIpQGs~LSslLc~lyy~dle~~y~~~~~~~g~~vLlR~vDDFLfITt~~~~a~kfl~~l~~Gf~~yn~~tn~~K 708 (888)
T KOG1005|consen 629 YVQKKGIPQGSILSSLLCHLYYGDLEDKYFSFEKEDGSIVLLRYVDDFLFITTENDQAKKFLKLLSRGFNKYNFFTNEPK 708 (888)
T ss_pred EEEecCccCCCchhHHHHHHHHHhHHHHHhhcccCCCcEEEEEeecceEEEecCHHHHHHHHHHHhccccccceeccCcc
Confidence 3445667778777776543 1 269999999999999999999988776666654 4445
Q ss_pred ee
Q psy17439 208 WA 209 (576)
Q Consensus 208 ~~ 209 (576)
.+
T Consensus 709 ~~ 710 (888)
T KOG1005|consen 709 TV 710 (888)
T ss_pred cc
Confidence 44
No 41
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=26.32 E-value=59 Score=33.81 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.5
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|.+|||++.+++.|++|-+.-++
T Consensus 93 hVl~EKPla~t~~ea~~l~~~a~~ 116 (342)
T COG0673 93 HVLCEKPLALTLEEAEELVELARK 116 (342)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999988876654
No 42
>PRK11579 putative oxidoreductase; Provisional
Probab=26.06 E-value=59 Score=34.39 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=20.7
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|.+|||++.+++.|++|.+.-++
T Consensus 90 hVl~EKPla~t~~ea~~l~~~a~~ 113 (346)
T PRK11579 90 HVVVDKPFTVTLSQARELDALAKS 113 (346)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHH
Confidence 377899999999999999887663
No 43
>PRK10206 putative oxidoreductase; Provisional
Probab=24.56 E-value=64 Score=34.33 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.8
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|.+|||+..+++.|++|-+.-++
T Consensus 90 hVl~EKPla~~~~ea~~l~~~a~~ 113 (344)
T PRK10206 90 NVLVEKPFTPTLAEAKELFALAKS 113 (344)
T ss_pred cEEEecCCcCCHHHHHHHHHHHHH
Confidence 478899999999999999887663
No 44
>COG5649 Uncharacterized conserved protein [Function unknown]
Probab=22.35 E-value=1.4e+02 Score=26.91 Aligned_cols=51 Identities=18% Similarity=0.520 Sum_probs=29.4
Q ss_pred cCCccccCcee-----eecCccCCccccEEEEEecCC-----CCcCCCCCCCCCE-EEEEecCCC
Q psy17439 489 KNERWDGVPFI-----LRCGKALNERKADIRIQYTDV-----PGDIFEGKTKRNE-LVMRVQPGE 542 (576)
Q Consensus 489 dn~rW~GVPf~-----lrtGK~l~~~~~~I~i~fk~~-----~~~~f~~~~~~n~-Lv~~i~P~~ 542 (576)
..+.|+|+|++ +.||... ...|.+.|-+- |..+|+.....|. =-|.++-++
T Consensus 49 e~vKWrg~Pvweh~g~ictge~y---k~vvK~tFakGAsL~dPa~lfnssl~gntrRaiDfhegd 110 (132)
T COG5649 49 EAVKWRGSPVWEHDGWICTGECY---KGVVKVTFAKGASLADPAPLFNSSLEGNTRRAIDFHEGD 110 (132)
T ss_pred heeeecCcccccCCceEEeeeee---eeEEEEEEecccccCCCCccccccCCCCceeeEeeccCc
Confidence 35689999998 5666554 35777887532 3345654333333 235554443
No 45
>PRK14634 hypothetical protein; Provisional
Probab=22.07 E-value=95 Score=29.42 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=32.0
Q ss_pred eEEEeccCCC--CCHHHHHHHHHHHhccCCCcceEeeccc
Q psy17439 3 TRVIIEKPFG--KDSDSSRHLSNHLGALFPEEQIYRIDHY 40 (576)
Q Consensus 3 ~r~~~Ekpfg--~d~~sa~~l~~~~~~~~~e~~i~ridhy 40 (576)
-||.|+||-| .+++...++++.|...++++..+ -++|
T Consensus 38 lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~d~i-~~~Y 76 (155)
T PRK14634 38 LQVQIRRSSGSDVSLDDCAGFSGPMGEALEASQLL-TEAY 76 (155)
T ss_pred EEEEEECCCCCcccHHHHHHHHHHHHHHhcccccC-CCCe
Confidence 6999999999 99999999999999999988764 3444
Done!