Query psy17439
Match_columns 576
No_of_seqs 330 out of 1813
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 22:30:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bh9_A G6PD, glucose-6-phospha 100.0 1.1E-79 3.8E-84 659.8 21.8 267 1-573 137-403 (489)
2 4e9i_A Glucose-6-phosphate 1-d 100.0 2.7E-78 9.1E-83 654.8 16.8 263 1-573 195-457 (541)
3 1dpg_A G6PD, glucose 6-phospha 100.0 2.3E-78 7.7E-83 650.1 16.0 262 1-572 140-407 (485)
4 2bh9_A G6PD, glucose-6-phospha 99.9 3.9E-25 1.3E-29 237.6 4.5 135 362-498 333-481 (489)
5 1dpg_A G6PD, glucose 6-phospha 99.9 2.2E-24 7.4E-29 232.0 3.1 131 362-494 337-482 (485)
6 4e9i_A Glucose-6-phosphate 1-d 99.9 9.8E-24 3.3E-28 228.9 3.8 129 362-492 388-529 (541)
7 1rw3_A POL polyprotein; RNA an 99.8 1.3E-21 4.3E-26 212.8 2.7 294 8-362 42-364 (455)
8 2zd1_A Reverse transcriptase/r 99.6 6E-15 2E-19 164.2 11.8 291 7-362 22-345 (557)
9 2zd1_B P51 RT; P51/P66, hetero 99.6 3.4E-15 1.2E-19 161.1 8.6 290 7-362 20-343 (428)
10 1mu2_A HIV-2 RT; HIV-2 reverse 99.5 9.9E-15 3.4E-19 162.4 10.5 289 8-362 21-343 (555)
11 3fsi_A RT, reverse transcripta 99.5 4.4E-15 1.5E-19 149.2 5.6 171 8-205 38-231 (255)
12 3kyl_A Telomerase reverse tran 59.7 7.5 0.00026 42.3 4.6 83 154-253 303-404 (596)
13 4h3v_A Oxidoreductase domain p 42.6 13 0.00045 37.7 3.1 24 4-27 101-124 (390)
14 3o9z_A Lipopolysaccaride biosy 35.8 22 0.00074 35.6 3.4 24 4-27 98-121 (312)
15 4fb5_A Probable oxidoreductase 35.7 21 0.00072 36.1 3.4 24 4-27 120-143 (393)
16 3oa2_A WBPB; oxidoreductase, s 33.7 24 0.00083 35.4 3.4 24 4-27 99-122 (318)
17 3rc1_A Sugar 3-ketoreductase; 30.2 30 0.001 35.1 3.3 24 4-27 115-138 (350)
18 4had_A Probable oxidoreductase 30.1 21 0.00072 35.9 2.2 23 4-26 112-134 (350)
19 3ohs_X Trans-1,2-dihydrobenzen 29.2 32 0.0011 34.4 3.3 24 4-27 92-115 (334)
20 4ew6_A D-galactose-1-dehydroge 29.0 32 0.0011 34.6 3.3 24 4-27 107-130 (330)
21 3ip3_A Oxidoreductase, putativ 28.7 33 0.0011 34.5 3.3 24 4-27 93-116 (337)
22 3f4l_A Putative oxidoreductase 28.5 33 0.0011 34.5 3.3 24 4-27 91-114 (345)
23 3u3x_A Oxidoreductase; structu 28.0 35 0.0012 34.8 3.4 33 4-39 114-146 (361)
24 3fhl_A Putative oxidoreductase 28.0 33 0.0011 34.8 3.2 24 4-27 91-114 (362)
25 1lc0_A Biliverdin reductase A; 27.9 35 0.0012 33.7 3.3 24 4-27 91-114 (294)
26 1zh8_A Oxidoreductase; TM0312, 27.0 37 0.0013 34.2 3.4 24 4-27 108-131 (340)
27 3evn_A Oxidoreductase, GFO/IDH 26.9 37 0.0013 34.0 3.3 24 4-27 93-116 (329)
28 3e82_A Putative oxidoreductase 26.9 37 0.0013 34.6 3.3 24 4-27 93-116 (364)
29 3i23_A Oxidoreductase, GFO/IDH 26.7 37 0.0013 34.3 3.3 24 4-27 91-114 (349)
30 4gqa_A NAD binding oxidoreduct 26.6 36 0.0012 35.2 3.2 23 4-26 122-144 (412)
31 3gdo_A Uncharacterized oxidore 26.4 37 0.0013 34.5 3.2 24 4-27 91-114 (358)
32 3e9m_A Oxidoreductase, GFO/IDH 25.7 40 0.0014 33.7 3.3 24 4-27 93-116 (330)
33 3dty_A Oxidoreductase, GFO/IDH 25.5 41 0.0014 34.7 3.4 24 4-27 111-134 (398)
34 3mz0_A Inositol 2-dehydrogenas 25.3 41 0.0014 33.8 3.3 24 4-27 92-115 (344)
35 3uuw_A Putative oxidoreductase 25.3 42 0.0014 33.1 3.4 24 4-27 92-115 (308)
36 3e18_A Oxidoreductase; dehydro 25.2 40 0.0014 34.3 3.2 24 4-27 91-114 (359)
37 3kux_A Putative oxidoreductase 25.1 42 0.0014 33.8 3.4 24 4-27 93-116 (352)
38 2p2s_A Putative oxidoreductase 24.1 45 0.0015 33.3 3.4 24 4-27 92-115 (336)
39 3oqb_A Oxidoreductase; structu 23.9 45 0.0015 34.0 3.3 24 4-27 109-132 (383)
40 3db2_A Putative NADPH-dependen 23.3 46 0.0016 33.5 3.3 24 4-27 92-115 (354)
41 3ec7_A Putative dehydrogenase; 23.3 46 0.0016 33.8 3.3 24 4-27 113-136 (357)
42 4hkt_A Inositol 2-dehydrogenas 23.0 49 0.0017 33.0 3.3 24 4-27 89-112 (331)
43 3euw_A MYO-inositol dehydrogen 22.8 54 0.0018 32.8 3.6 24 4-27 91-114 (344)
44 1ydw_A AX110P-like protein; st 22.0 54 0.0018 33.1 3.5 23 4-26 97-119 (362)
45 3m2t_A Probable dehydrogenase; 21.8 52 0.0018 33.4 3.3 24 4-27 94-117 (359)
46 3v5n_A Oxidoreductase; structu 21.7 52 0.0018 34.3 3.3 24 4-27 136-159 (417)
47 3hst_B Protein RV2228C/MT2287; 21.6 44 0.0015 28.7 2.3 12 343-354 2-13 (141)
48 4ekf_A Adenain; alpha and beta 21.5 94 0.0032 29.3 4.5 21 232-252 49-69 (204)
49 2ho3_A Oxidoreductase, GFO/IDH 21.1 56 0.0019 32.4 3.3 24 4-27 88-111 (325)
50 3q2i_A Dehydrogenase; rossmann 21.0 56 0.0019 32.9 3.3 24 4-27 101-124 (354)
51 3btv_A Galactose/lactose metab 20.8 78 0.0027 33.1 4.5 33 3-38 120-152 (438)
52 1tlt_A Putative oxidoreductase 20.4 59 0.002 32.2 3.3 24 4-27 91-114 (319)
53 3moi_A Probable dehydrogenase; 20.1 59 0.002 33.3 3.3 24 4-27 90-113 (387)
No 1
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A*
Probab=100.00 E-value=1.1e-79 Score=659.83 Aligned_cols=267 Identities=73% Similarity=1.248 Sum_probs=253.2
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccCCCCcCeEEEEEeCccc
Q psy17439 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFG 80 (576)
Q Consensus 1 ~~~r~~~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n~~~~~kvriv~d~s~~ 80 (576)
||+|||||||||+|++||++||++|+++|+|+||||||||||||+|||||+|||+|.+|+|+||++||++|+|+++|+.+
T Consensus 137 g~~RvViEKPFG~DL~SA~~Ln~~l~~~F~E~qIyRIDHYLGKE~VQNll~lRFaN~ifeplWNr~~Id~VqIt~aE~~G 216 (489)
T 2bh9_A 137 GWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFG 216 (489)
T ss_dssp SCEEEEECSCSCSSHHHHHHHHHHHTTTSCGGGEEECCGGGGCHHHHHHHHHHHSCGGGSTTCSTTTEEEEEEEEECSCC
T ss_pred CceEEEEeCCCCCchhhHHHHHHHHHhhCCHHHeeecccccchHHHHHHHHHHHhhHHHHhhhcccccceEEEEEecCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCcccchhhHHHHHHHHHHhccCCcccCHHHHhhcccCCCCCCccceEEEeccCCCCCceEEEEeeeccC
Q psy17439 81 TQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRNEKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFG 160 (576)
Q Consensus 81 ~~~rg~sln~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG 160 (576)
++|||.||+.+++++||+||||||+|+.++|++|+.+.++||+.++
T Consensus 217 vegRggYYD~~GalRDmvQNHLlQlL~lvAMEpP~s~~a~~iRdEK---------------------------------- 262 (489)
T 2bh9_A 217 TEGRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNSDDVRDEK---------------------------------- 262 (489)
T ss_dssp CTTCHHHHTTTHHHHHTTTTHHHHHHHHHHCCCCSSSSHHHHHHHH----------------------------------
T ss_pred ccchhhhhhccchHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH----------------------------------
Confidence 9999999999999999999999999999999999998888886444
Q ss_pred CCCCHHhhhcccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCCCCcccCCCCcCCCCccceEee
Q psy17439 161 LPPSPYQAQRSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDCEKPHMLGSNESIKVLG 240 (576)
Q Consensus 161 ~~~SP~ll~~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i~~~d~~~~~~~~~~~~~K~LG 240 (576)
T Consensus 263 -------------------------------------------------------------------------------- 262 (489)
T 2bh9_A 263 -------------------------------------------------------------------------------- 262 (489)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCceeeeeeeccCCCCCchHHHHHhhhhcccccCccchhhhHHHHHHHHHhhhcCCCCCCCCChhHHHHHHHHH
Q psy17439 241 IRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIASIDDVNGFLSPVTVYMKMFMQQVWLIKDVSWDSPLPGTLQRKWNRLI 320 (576)
Q Consensus 241 ~~w~~~~D~l~~~~~~~~~~~~~TKR~~ls~va~~yDPlGl~~p~~~~~K~~lq~l~~~~~~~Wd~~l~~e~~~~w~~~~ 320 (576)
T Consensus 263 -------------------------------------------------------------------------------- 262 (489)
T 2bh9_A 263 -------------------------------------------------------------------------------- 262 (489)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcccceeeeeeeecCCCCcceEEEeecccccceeEEEEeeeccCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCC
Q psy17439 321 SEIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGAAYAAVVYLSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPG 400 (576)
Q Consensus 321 ~~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~ayga~~Ylk~l~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~ 400 (576)
T Consensus 263 -------------------------------------------------------------------------------- 262 (489)
T 2bh9_A 263 -------------------------------------------------------------------------------- 262 (489)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEEeeCCCCCCceeeeeeeccccccccccccccccCCcccceecccccCCCCCCCcccccccCCCCCCCCCCChh
Q psy17439 401 EAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPT 480 (576)
Q Consensus 401 e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~aye~L~~~d~V~Gqy~~~~~deve~~W~yvde~~y~agS~gpT 480 (576)
++||+|+++++..++|+|||+.+..++++.+.||+|+++|+++|.|||
T Consensus 263 --------------------------------vKVLralrp~~~~~~VrGQY~~g~~~~g~~v~gY~~E~~V~~~S~TeT 310 (489)
T 2bh9_A 263 --------------------------------VKVLKCISEVQANNVVLGQYVGNPDGEGEATKGYLDDPTVPRGSTTAT 310 (489)
T ss_dssp --------------------------------HHHHTTBCCCCGGGEEEEEEECCTTSCSTTSSCGGGCTTSCTTCCCCS
T ss_pred --------------------------------HHHHhccCCCCccCeEEecccCCcCCCCCCCCCcccCCCCCCCCCCcc
Confidence 567888888877899999999874333678899999999999999999
Q ss_pred HHHHHhhhcCCccccCceeeecCccCCccccEEEEEecCCCCcCCCCCCCCCEEEEEecCCCcEEEEeeecCCCCCCcee
Q psy17439 481 FASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDME 560 (576)
Q Consensus 481 ~aa~~l~idn~rW~GVPf~lrtGK~l~~~~~~I~i~fk~~~~~~f~~~~~~n~Lv~~i~P~~~i~l~~~~k~pg~~~~~~ 560 (576)
||+++++||||||+||||||||||||++|.+||+|+||++|+.+|+..+.+|+|||+|||+|+|+|++|+|.||.++.++
T Consensus 311 faA~kl~IdN~RW~GVPFylRtGKrL~~r~teI~I~Fk~~p~~~f~~~~~~N~LviriqP~e~i~l~~~~K~PG~~~~~~ 390 (489)
T 2bh9_A 311 FAAVVLYVENERWDGVPFILRCGKALNERKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPE 390 (489)
T ss_dssp EEEEEEEBCSTTTTTCEEEEEEESSCSSCEEEEEEEECCCSSCCSTTCCCCCEEEEEEESSCEEEEEEEEECTTTCCSEE
T ss_pred eEEEEEEEcCcCcCCCCEEEEcCCCCCcceEEEEEEecCCChhhcccCCCCCEEEEEeCCCCeEEEEEeccCCCCCCcce
Confidence 99999999999999999999999999999999999999999999965567999999999999999999999999999999
Q ss_pred EEEEeeecccccC
Q psy17439 561 ETELDLTYGSRYK 573 (576)
Q Consensus 561 ~~~l~~~~~~~~~ 573 (576)
+++|+++|.+.|+
T Consensus 391 ~~~ld~~~~~~~~ 403 (489)
T 2bh9_A 391 ESELDLTYGNRYK 403 (489)
T ss_dssp EEEEEEETTTSSS
T ss_pred eeeEEEechhccc
Confidence 9999999999873
No 2
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway, alpha beta, NAD(P) rossmann-like domain, oxidoreductase; 2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Probab=100.00 E-value=2.7e-78 Score=654.77 Aligned_cols=263 Identities=59% Similarity=1.008 Sum_probs=249.3
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccCCCCcCeEEEEEeCccc
Q psy17439 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFG 80 (576)
Q Consensus 1 ~~~r~~~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n~~~~~kvriv~d~s~~ 80 (576)
||+|||||||||+|++||++||++|+++|+|+||||||||||||+|||||+|||+|.+|+|+||++||++|+|+++|+.+
T Consensus 195 g~~RVVIEKPFG~DL~SA~~Ln~~L~~~F~E~QIyRIDHYLGKE~VQNll~lRFaN~ifeplWNr~~Id~VQIt~aE~~G 274 (541)
T 4e9i_A 195 GWVRLIVEKPFGRDTETSEQLSNQLKPLFNERQVFRIDHYLGKEMVQNIIVTRFANRVFSALWNSNSIACVQITFKEKIG 274 (541)
T ss_dssp CCEEEEECSCCCSSHHHHHHHHHHHTTTSCGGGEEECCGGGGSHHHHTHHHHHHSCHHHHHHCSTTTEEEEEEEEECSCC
T ss_pred CceEEEEeCCCCCchHhHHHHHHHHHhhCCHHHeecccccccHHHHHHHHHHHHhhHhhhhhhcccCccceEEEecCCcC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCcccchhhHHHHHHHHHHhccCCcccCHHHHhhcccCCCCCCccceEEEeccCCCCCceEEEEeeeccC
Q psy17439 81 TQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRNEKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFG 160 (576)
Q Consensus 81 ~~~rg~sln~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG 160 (576)
++|||.||+.+++++||+||||||+|+.++|++|+.+.++||+.++
T Consensus 275 vegRggYYD~~GalRDmvQNHLlQlL~LvAMEpP~s~~a~~iRdEK---------------------------------- 320 (541)
T 4e9i_A 275 TAGRGGYFDSIGIIRDVIQNHLTQILSLLTMEKPRSLSAEDIRDEK---------------------------------- 320 (541)
T ss_dssp CTTCHHHHHHHHHHHHTTTTHHHHHHHHHHCCCCSSSSHHHHHHHH----------------------------------
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH----------------------------------
Confidence 9999999999999999999999999999999999998888886544
Q ss_pred CCCCHHhhhcccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCCCCcccCCCCcCCCCccceEee
Q psy17439 161 LPPSPYQAQRSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDCEKPHMLGSNESIKVLG 240 (576)
Q Consensus 161 ~~~SP~ll~~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i~~~d~~~~~~~~~~~~~K~LG 240 (576)
T Consensus 321 -------------------------------------------------------------------------------- 320 (541)
T 4e9i_A 321 -------------------------------------------------------------------------------- 320 (541)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCceeeeeeeccCCCCCchHHHHHhhhhcccccCccchhhhHHHHHHHHHhhhcCCCCCCCCChhHHHHHHHHH
Q psy17439 241 IRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIASIDDVNGFLSPVTVYMKMFMQQVWLIKDVSWDSPLPGTLQRKWNRLI 320 (576)
Q Consensus 241 ~~w~~~~D~l~~~~~~~~~~~~~TKR~~ls~va~~yDPlGl~~p~~~~~K~~lq~l~~~~~~~Wd~~l~~e~~~~w~~~~ 320 (576)
T Consensus 321 -------------------------------------------------------------------------------- 320 (541)
T 4e9i_A 321 -------------------------------------------------------------------------------- 320 (541)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcccceeeeeeeecCCCCcceEEEeecccccceeEEEEeeeccCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCC
Q psy17439 321 SEIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGAAYAAVVYLSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPG 400 (576)
Q Consensus 321 ~~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~ayga~~Ylk~l~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~ 400 (576)
T Consensus 321 -------------------------------------------------------------------------------- 320 (541)
T 4e9i_A 321 -------------------------------------------------------------------------------- 320 (541)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEEeeCCCCCCceeeeeeeccccccccccccccccCCcccceecccccCCCCCCCcccccccCCCCCCCCCCChh
Q psy17439 401 EAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPT 480 (576)
Q Consensus 401 e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~aye~L~~~d~V~Gqy~~~~~deve~~W~yvde~~y~agS~gpT 480 (576)
++||+|+++++..++|+|||+.+. .+ .+.+|+|+++|+++|.|||
T Consensus 321 --------------------------------vKVLralrpi~~~~vVrGQY~~g~--~g-~v~gY~~e~gV~~~S~TeT 365 (541)
T 4e9i_A 321 --------------------------------VQVLRQVVPANPAECVLGQYTASA--DG-STPGYLDDPSVPKGSHCPT 365 (541)
T ss_dssp --------------------------------HHHHTTBCCCCTTSEEEEEEECCS--SS-SSCCGGGCTTSCTTCCCCS
T ss_pred --------------------------------HHHHHccCCCCccceEEccccCCC--CC-CCCCccCCCCCCCCCCCcc
Confidence 567888888877899999998763 23 6789999999999999999
Q ss_pred HHHHHhhhcCCccccCceeeecCccCCccccEEEEEecCCCCcCCCCCCCCCEEEEEecCCCcEEEEeeecCCCCCCcee
Q psy17439 481 FASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDME 560 (576)
Q Consensus 481 ~aa~~l~idn~rW~GVPf~lrtGK~l~~~~~~I~i~fk~~~~~~f~~~~~~n~Lv~~i~P~~~i~l~~~~k~pg~~~~~~ 560 (576)
||+++++||||||+||||||||||||++|.+||+|+||++|+.+|.. +.+|+|||+|||+|+|+|++|+|.||.++.++
T Consensus 366 faA~kl~IdN~RW~GVPFyLRtGKrL~~r~tEI~I~FK~~p~~~F~~-~~~N~LviriQP~E~i~l~~~~K~PG~~~~~~ 444 (541)
T 4e9i_A 366 FAVLRLHVNNDRWHGVPFIIRAGKALEERLLDIRIQFKDEIRPFGES-TQRNELVIRAQPSEAMYLKLTAKTPGLLNDTH 444 (541)
T ss_dssp EEEEEEEBCSTTTTTCEEEEEEESSBSSCEEEEEEEECCCCTTTGGG-CCCCEEEEEEESSCEEEEEEEEECSSSCCCEE
T ss_pred cEEEEEEEcCcccCCCCEEEEccCCcCcceEEEEEEEecCChhhcCC-CCCCEEEEEECCCCeEEEEEeccCCCCCCcee
Confidence 99999999999999999999999999999999999999999999964 57999999999999999999999999999999
Q ss_pred EEEEeeecccccC
Q psy17439 561 ETELDLTYGSRYK 573 (576)
Q Consensus 561 ~~~l~~~~~~~~~ 573 (576)
+++|+++|.+.|.
T Consensus 445 ~~~Ld~~y~~~~~ 457 (541)
T 4e9i_A 445 QTELDLTYERRYD 457 (541)
T ss_dssp EEEEEEEHHHHCC
T ss_pred eeeeeeecccccC
Confidence 9999999987764
No 3
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5 PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A* 1h9b_A 2dpg_A*
Probab=100.00 E-value=2.3e-78 Score=650.08 Aligned_cols=262 Identities=35% Similarity=0.635 Sum_probs=246.6
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccCCCCcCeEEEEEeCccc
Q psy17439 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWNRENIASVMITFKEPFG 80 (576)
Q Consensus 1 ~~~r~~~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n~~~~~kvriv~d~s~~ 80 (576)
||+|||||||||+|++||++||++|+++|+|+||||||||||||+|||||+|||+|.+|+|+||++||++|+|+++|+.+
T Consensus 140 g~~RvViEKPFG~DL~SA~~Ln~~l~~~F~E~qIyRIDHYLGKE~VQNll~lRFaN~ifeplWNr~~Id~VqIt~aE~~G 219 (485)
T 1dpg_A 140 GYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLG 219 (485)
T ss_dssp SCEEEEECSCCCSSHHHHHHHHHHHTTTCCGGGEEECCGGGGSGGGGGHHHHHHTCHHHHTTSSTTTEEEEEEEEECSCC
T ss_pred CceEEEEeCCCCCchhhHHHHHHHHHhhCCHHHEeeccccccHHHHHHHHHHHHhhHhhhhhhcccCceeEEEEEecCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCcccchhhHHHHHHHHHHhccCCcccCHHHHhhcccCCCCCCccceEEEeccCCCCCceEEEEeeeccC
Q psy17439 81 TQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRNEKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFG 160 (576)
Q Consensus 81 ~~~rg~sln~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG 160 (576)
++|||.||+.+++++||+||||||+|+.++|++|+.+.++||+.+|
T Consensus 220 vegRggYYD~~GalRDmvQNHLlQlL~lvAMEpP~s~~a~~iRdEK---------------------------------- 265 (485)
T 1dpg_A 220 VEERAGYYDTAGALLDMIQNHTMQIVGWLAMEKPESFTDKDIRAAK---------------------------------- 265 (485)
T ss_dssp CTTCHHHHHHHHHHHHTTTTHHHHHHHHHHCCCCSSSSHHHHHHHH----------------------------------
T ss_pred cChhhcchhccchHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999888887554
Q ss_pred CCCCHHhhhcccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCCCCcccCCCCcCCCCccceEee
Q psy17439 161 LPPSPYQAQRSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDCEKPHMLGSNESIKVLG 240 (576)
Q Consensus 161 ~~~SP~ll~~~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i~~~d~~~~~~~~~~~~~K~LG 240 (576)
T Consensus 266 -------------------------------------------------------------------------------- 265 (485)
T 1dpg_A 266 -------------------------------------------------------------------------------- 265 (485)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCceeeeeeeccCCCCCchHHHHHhhhhcccccCccchhhhHHHHHHHHHhhhcCCCCCCCCChhHHHHHHHHH
Q psy17439 241 IRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIASIDDVNGFLSPVTVYMKMFMQQVWLIKDVSWDSPLPGTLQRKWNRLI 320 (576)
Q Consensus 241 ~~w~~~~D~l~~~~~~~~~~~~~TKR~~ls~va~~yDPlGl~~p~~~~~K~~lq~l~~~~~~~Wd~~l~~e~~~~w~~~~ 320 (576)
T Consensus 266 -------------------------------------------------------------------------------- 265 (485)
T 1dpg_A 266 -------------------------------------------------------------------------------- 265 (485)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcccceeeeeeeecCCCCcceEEEeecccccceeEEEEeeeccCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCC
Q psy17439 321 SEIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGAAYAAVVYLSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPG 400 (576)
Q Consensus 321 ~~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~ayga~~Ylk~l~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~ 400 (576)
T Consensus 266 -------------------------------------------------------------------------------- 265 (485)
T 1dpg_A 266 -------------------------------------------------------------------------------- 265 (485)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEEeeCCCCCCceeeeeeeccccccccccccccccCCcc----cceecccccCCCCCCCcccccccCCCCCCCCC
Q psy17439 401 EAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIPPLQL----EDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGS 476 (576)
Q Consensus 401 e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~aye~L~~----~d~V~Gqy~~~~~deve~~W~yvde~~y~agS 476 (576)
++||+|+++++. .++|+|||+.+. ++.+.||+|+++|+++|
T Consensus 266 --------------------------------vKVLralrp~~~~~v~~~~VrGQY~~g~---g~~v~gY~eE~gV~~~S 310 (485)
T 1dpg_A 266 --------------------------------NAAFNALKIYDEAEVNKYFVRAQYGAGD---SADFKPYLEELDVPADS 310 (485)
T ss_dssp --------------------------------HHHHTTBCCCCHHHHHHHEEEEEECCCS---STTCCCGGGSTTCCTTC
T ss_pred --------------------------------HHHHhccCCCChhhhccCeEEeccCCCC---CCCCCCccCCCCCCCCC
Confidence 456667776654 468999998763 57788999999999999
Q ss_pred CChhHHHHHhhhcCCccccCceeeecCccCCccccEEEEEecCCCCcCCCCC--CCCCEEEEEecCCCcEEEEeeecCCC
Q psy17439 477 NTPTFASAVLKIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGK--TKRNELVMRVQPGEAVYVKMMTKTPG 554 (576)
Q Consensus 477 ~gpT~aa~~l~idn~rW~GVPf~lrtGK~l~~~~~~I~i~fk~~~~~~f~~~--~~~n~Lv~~i~P~~~i~l~~~~k~pg 554 (576)
.|||||+++++||||||+||||||||||||++|.+||+|+||++|+. |+.. +.+|+|||+|||+|+|+|++++|.||
T Consensus 311 ~TeTfaA~kl~IdN~RW~GVPFyLRtGKrL~~r~teI~I~Fk~~p~~-f~~~~~~~~N~LviriqP~egi~l~~~~K~PG 389 (485)
T 1dpg_A 311 KNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFN-FGSEQEAQEAVLSIIIDPKGAIELKLNAKSVE 389 (485)
T ss_dssp CCCSEEEEEECBCSGGGTTCCEEEEEESSBSSCEEEEEEEECCCCCC-CCSSSCCCCCEEEEEEESSCEEEEEEEEECSS
T ss_pred CCCceEEEEEEEcCCccCCccEEEEecCCcccceEEEEEEecCCCcC-cCccccCCCCEEEEEECCCCeEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999 9642 57999999999999999999999999
Q ss_pred CCCceeEEEEeeeccccc
Q psy17439 555 MSFDMEETELDLTYGSRY 572 (576)
Q Consensus 555 ~~~~~~~~~l~~~~~~~~ 572 (576)
.++.+++++|+++|.+.|
T Consensus 390 ~~~~~~~~~ld~~~~~~~ 407 (485)
T 1dpg_A 390 DAFNTRTIDLGWTVSDED 407 (485)
T ss_dssp SSCCEEEEEEEEECCHHH
T ss_pred CCCceeeeeEEeeccccc
Confidence 999999999999998876
No 4
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A*
Probab=99.90 E-value=3.9e-25 Score=237.64 Aligned_cols=135 Identities=47% Similarity=0.674 Sum_probs=123.5
Q ss_pred eeeccCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCCCeEEEEEEeeCCCCCCceeeeeeeccccccc-ccccccccc
Q psy17439 362 LSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDLTYGSRY-KVKVLKCIP 440 (576)
Q Consensus 362 lk~l~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~-k~~vl~aye 440 (576)
.|+|+++.+||+|+||++|+.+|.....+|+|||||||+|+|++++++|.||.++.+++++||++|...+ ....++|||
T Consensus 333 GKrL~~r~teI~I~Fk~~p~~~f~~~~~~N~LviriqP~e~i~l~~~~K~PG~~~~~~~~~ld~~~~~~~~~~~~p~aYE 412 (489)
T 2bh9_A 333 GKALNERKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGNRYKNVKLPDAYE 412 (489)
T ss_dssp ESSCSSCEEEEEEEECCCSSCCSTTCCCCCEEEEEEESSCEEEEEEEEECTTTCCSEEEEEEEEETTTSSSSSCCCCHHH
T ss_pred CCCCCcceEEEEEEecCCChhhcccCCCCCEEEEEeCCCCeEEEEEeccCCCCCCcceeeeEEEechhcccCCCCCchHH
Confidence 5779999999999999999999976567999999999999999999999999999999999999999887 567799999
Q ss_pred CCcccceecccccCCCC-CCCcccccccCC------------CCCCCCCCChhHHHHHhhhcCCccccCce
Q psy17439 441 PLQLEDVVLGQYTGDPN-GEGDAKYGYLDD------------KTVPPGSNTPTFASAVLKIKNERWDGVPF 498 (576)
Q Consensus 441 ~L~~~d~V~Gqy~~~~~-deve~~W~yvde------------~~y~agS~gpT~aa~~l~idn~rW~GVPf 498 (576)
+| +.|+++|+.++|.+ ||++++|+++|+ +.|++|||||..|..++..++..|++ |+
T Consensus 413 rL-llD~~~Gd~tlF~r~DEve~aW~ivdpil~~w~~~~~~~~~Y~aGS~GP~~a~~ll~~~g~~W~~-~~ 481 (489)
T 2bh9_A 413 RL-ILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIYGSRGPTEADELMKRVGFQYEG-TY 481 (489)
T ss_dssp HH-HHHHHHTCCTTSCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEETTSSSCHHHHHHHHHHTCCCCS-CC
T ss_pred HH-HHHHHcCChhcCCChHHHHHHHHHHhHHHHHHhhCCCCCCCCCCCCCChHHHHHHHHhcCCcccc-ce
Confidence 97 89999999999955 899999998873 34999999999999999999999987 44
No 5
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5 PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A* 1h9b_A 2dpg_A*
Probab=99.89 E-value=2.2e-24 Score=232.02 Aligned_cols=131 Identities=16% Similarity=0.251 Sum_probs=119.0
Q ss_pred eeeccCceeEEEEEeecCCCCCCCCC--CCCcEEEEEecCCCeEEEEEEeeCCCCCCceeeeeeeccccccccccccccc
Q psy17439 362 LSALNERKADIRIQYTDVPGDIFEGK--TKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCI 439 (576)
Q Consensus 362 lk~l~~~~tEI~I~Fk~~p~~~f~~~--~~~N~Lv~riqP~e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~ay 439 (576)
.|+|+++.+||+|+||++|+. |... ..+|+|||||||+|+|++++++|.||.++.+++++||++|...+....++||
T Consensus 337 GKrL~~r~teI~I~Fk~~p~~-f~~~~~~~~N~LviriqP~egi~l~~~~K~PG~~~~~~~~~ld~~~~~~~~~~~p~AY 415 (485)
T 1dpg_A 337 GKRLAAKQTRVDIVFKAGTFN-FGSEQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNTPEPY 415 (485)
T ss_dssp ESSBSSCEEEEEEEECCCCCC-CCSSSCCCCCEEEEEEESSCEEEEEEEEECSSSSCCEEEEEEEEECCHHHHHHCCCHH
T ss_pred cCCcccceEEEEEEecCCCcC-cCccccCCCCEEEEEECCCCeEEEEEEecCCCCCCceeeeeEEeecccccCCCCCCHH
Confidence 577999999999999999999 9653 4689999999999999999999999999999999999999988777789999
Q ss_pred cCCcccceecccccCCC-CCCCcccccccCC------------CCCCCCCCChhHHHHHhhhcCCccc
Q psy17439 440 PPLQLEDVVLGQYTGDP-NGEGDAKYGYLDD------------KTVPPGSNTPTFASAVLKIKNERWD 494 (576)
Q Consensus 440 e~L~~~d~V~Gqy~~~~-~deve~~W~yvde------------~~y~agS~gpT~aa~~l~idn~rW~ 494 (576)
|+| +.|+++|+.++|. .||++++|+++|+ ..|++|||||..|..++..++..|+
T Consensus 416 ErL-llD~~~Gd~tlF~r~DEve~aW~ivdPil~~w~~~~~~~~~Y~aGs~GP~~a~~ll~~~g~~W~ 482 (485)
T 1dpg_A 416 ERM-IHDTMNGDGSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKSGSMGPEASDKLLAANGDAWV 482 (485)
T ss_dssp HHH-HHHHHHTCCTTSBCHHHHHHHHHHHHHHHHHHHTTCSCCEEECTTBSSCHHHHHHHHTTTCCCS
T ss_pred HHH-HHHHhcCCcccCCChHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCChHHHHHHHHhcCCccC
Confidence 997 8999999999994 4899999998873 3499999999999999999987774
No 6
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway, alpha beta, NAD(P) rossmann-like domain, oxidoreductase; 2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Probab=99.88 E-value=9.8e-24 Score=228.90 Aligned_cols=129 Identities=40% Similarity=0.536 Sum_probs=118.6
Q ss_pred eeeccCceeEEEEEeecCCCCCCCCCCCCcEEEEEecCCCeEEEEEEeeCCCCCCceeeeeeeccccccccccccccccC
Q psy17439 362 LSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIPP 441 (576)
Q Consensus 362 lk~l~~~~tEI~I~Fk~~p~~~f~~~~~~N~Lv~riqP~e~I~l~~~~K~PG~~~~~~~~~Ld~~~~~~~k~~vl~aye~ 441 (576)
.|+|+++.+||+|+||++|+.+|.. ..+|+|||||||+|+|++++++|.||.++.+++++||++|...+....++|||+
T Consensus 388 GKrL~~r~tEI~I~FK~~p~~~F~~-~~~N~LviriQP~E~i~l~~~~K~PG~~~~~~~~~Ld~~y~~~~~~~~pdAYEr 466 (541)
T 4e9i_A 388 GKALEERLLDIRIQFKDEIRPFGES-TQRNELVIRAQPSEAMYLKLTAKTPGLLNDTHQTELDLTYERRYDVTLPDAYES 466 (541)
T ss_dssp ESSBSSCEEEEEEEECCCCTTTGGG-CCCCEEEEEEESSCEEEEEEEEECSSSCCCEEEEEEEEEHHHHCCCCCCCHHHH
T ss_pred cCCcCcceEEEEEEEecCChhhcCC-CCCCEEEEEECCCCeEEEEEeccCCCCCCceeeeeeeeecccccCCCCCCcHHH
Confidence 4789999999999999999999964 468999999999999999999999999999999999999988887778999999
Q ss_pred CcccceecccccCCC-CCCCcccccccCC------------CCCCCCCCChhHHHHHhhhcCCc
Q psy17439 442 LQLEDVVLGQYTGDP-NGEGDAKYGYLDD------------KTVPPGSNTPTFASAVLKIKNER 492 (576)
Q Consensus 442 L~~~d~V~Gqy~~~~-~deve~~W~yvde------------~~y~agS~gpT~aa~~l~idn~r 492 (576)
| +.|+++|+.++|. .||++++|+++|+ +.|++|||||..|..++..++++
T Consensus 467 L-llD~~~Gd~tlF~r~DEve~aW~ivdPiL~~w~~~~~~~~~Y~aGS~GP~~a~~Ll~~~g~~ 529 (541)
T 4e9i_A 467 L-IHEALLGNSTNFVRVDELDAAWRIYTPLLHAIDRGEVKVLPYAAGSCGPEEAQEFIRISGYK 529 (541)
T ss_dssp H-HHHHHTTCGGGSBCHHHHHHHHHHHHHHHHHHHTTCSCEEEEETTBCSCHHHHHHHHHHTCC
T ss_pred H-HHHHHcCCcccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcCHHHHHHHHHhcCcE
Confidence 7 8999999999994 4899999998874 46999999999999999998865
No 7
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=99.82 E-value=1.3e-21 Score=212.81 Aligned_cols=294 Identities=13% Similarity=0.103 Sum_probs=206.5
Q ss_pred ccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccC-CCC-cCeEEEEEeCccccCccc
Q psy17439 8 EKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWN-REN-IASVMITFKEPFGTQGRG 85 (576)
Q Consensus 8 Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n-~~~-~~kvriv~d~s~~~~~rg 85 (576)
.||.-.+.+--+++++++.++.+.+-|..+ .++|..|++= ++. .+|.|+++|.+
T Consensus 42 ~~~~~~~~~~~~~~~~~i~~ll~~G~I~~~-----------------~sp~~spv~~V~Kk~~g~~R~~~D~r------- 97 (455)
T 1rw3_A 42 IKQYPMSQEARLGIKPHIQRLLDQGILVPC-----------------QSPWNTPLLPVKKPGTNDYRPVQDLR------- 97 (455)
T ss_dssp CCCCCCCTTHHHHSHHHHHHHHHTTSEEEE-----------------CCSCBBCEECCCCSSSSCCCCEECTH-------
T ss_pred cCCcCCCHHHHHHHHHHHHHHHhCCCEEec-----------------CCcccCceEEEeccCCCcEEEchhHH-------
Confidence 456666677777777777777777776654 2467788664 333 68999999874
Q ss_pred ccccccCcccchhhHHHHHHHHHHh-ccCCcccCHHHHhh--cccCCCCCCccceEEEeccCCCCCceEEEEeeeccCCC
Q psy17439 86 GYFDEFGIIRDVMQNHLLQILSLVA-MEKPATIHPDDIRN--EKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFGLP 162 (576)
Q Consensus 86 ~sln~~l~~gp~l~~~Ll~iL~r~r-~~~~~~~~~~DI~~--~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG~~ 162 (576)
.||+....++....++.++|.+++ ..++. +.-|++. +||.+.|+|++.+.|.|+.....+...|+|+|+|||++
T Consensus 98 -~LN~~~~~~~~~lp~~~~ll~~l~~~~~~~--s~lDl~~~y~qi~l~~~d~~~taF~~~~p~~~~~g~y~~~~mpfGl~ 174 (455)
T 1rw3_A 98 -EVNKRVEDIHPTVPNPYNLLSGLPPSHQWY--TVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFK 174 (455)
T ss_dssp -HHHHTBCCCCCCCCCHHHHHTTCCTTCCEE--EEEEBTTGGGGSBBCSTTSGGGCEEECTTSSSCCEEEEESBCCSSCT
T ss_pred -HHHhhccCCCCCCCCHHHHhhhhccCCceE--EecchhhhheeEeccccccceeEEeecCCCCCCCceEEEEecCCCCC
Confidence 799999988888889999988875 45544 3459987 59999999999999999865556788999999999999
Q ss_pred CCHHhhhc------------------ccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCCCCccc
Q psy17439 163 PSPYQAQR------------------SIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDC 224 (576)
Q Consensus 163 ~SP~ll~~------------------~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i~~~d~ 224 (576)
+||+.+++ ..||||++..++|++|+.+..+++.+.|++.||.+.. .+ +
T Consensus 175 naP~~fq~~m~~~l~~~~~~~~~~~v~~YvDDili~s~~~~e~~~~l~~v~~~l~~~gl~l~~-----~K---------~ 240 (455)
T 1rw3_A 175 NSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASA-----KK---------A 240 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHTCTTCEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHHTCCBCG-----GG---------C
T ss_pred CcHHHHHHHHHHHHHHhhhhCCCceEEEEcCCEEEecCCHHHHHHHHHHHHHHHHHcCCccCc-----cc---------h
Confidence 99998872 2699999999999999999999999999999997731 11 1
Q ss_pred CCCCcCCCCccceEeeeeeccCCCceeee-e-eeccCCCCCchHHHHHhhhhcccccCccchhhhHHHHHH----HHHhh
Q psy17439 225 EKPHMLGSNESIKVLGIRWCPKSDSFFNS-V-SVELDSPTTTKRQVLSLIASIDDVNGFLSPVTVYMKMFM----QQVWL 298 (576)
Q Consensus 225 ~~~~~~~~~~~~K~LG~~w~~~~D~l~~~-~-~~~~~~~~~TKR~~ls~va~~yDPlGl~~p~~~~~K~~l----q~l~~ 298 (576)
. ...+..++||+.+.......... + .+..-+.+.|++++.+.+.. +|++..++-....+. +.+..
T Consensus 241 ---~--f~~~~~~fLG~~i~~~gi~~~~~kv~~i~~~~~p~t~k~l~~flG~----~~y~r~fi~~~~~~~~pL~~llkk 311 (455)
T 1rw3_A 241 ---Q--ICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGT----AGFCRLWIPGFAEMAAPLYPLTKT 311 (455)
T ss_dssp ---C--CSBSSCEETTEEESSSEECCCTTCCCCCCCCCTTTHHHHHHHTTTT----TCCCSSCCCCCGGGCCTTCC----
T ss_pred ---h--hhccceeEeeeeccCCeeEEChhHhhhhccCCCCCCHHHhhhhccc----chHHHHHHhhhhhhcccHHHHhcC
Confidence 0 01245699999998654333111 1 11223457799999888744 444444433333322 22222
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHHhcccceeeeeeeecCCCCcceEEEeecccccceeEEEEe
Q psy17439 299 IKDVSWDSPLPGTLQRKWNRLISEIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGAAYAAVVYL 362 (576)
Q Consensus 299 ~~~~~Wd~~l~~e~~~~w~~~~~~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~ayga~~Yl 362 (576)
..+..|++. .++.|..+.+.|....-+..|.. ..++++|||||..++|||.+-
T Consensus 312 ~~~~~W~~~----~~~af~~lK~~l~~~pvL~~p~~-------~~~~~l~~DAS~~~~gavL~q 364 (455)
T 1rw3_A 312 GTLFNWGPD----QQKAYQEIKQALLTAPALGLPDL-------TKPFELFVDEKQGYAKGVLTQ 364 (455)
T ss_dssp ----CCCCC----CSSSCCHHHHHTCSSCCSCCSSS-------CCTTSCEEEEEECSSSBEECC
T ss_pred CCCcCchHH----HHHHHHHHHHHhhcCcccccCCC-------CCcEEEEEeccCCcceeEEEE
Confidence 234667765 45566777777766544443332 456889999999999998764
No 8
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.57 E-value=6e-15 Score=164.23 Aligned_cols=291 Identities=15% Similarity=0.075 Sum_probs=189.4
Q ss_pred eccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccC-CCCcC-eEEEEEeCccccCcc
Q psy17439 7 IEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWN-RENIA-SVMITFKEPFGTQGR 84 (576)
Q Consensus 7 ~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n-~~~~~-kvriv~d~s~~~~~r 84 (576)
-.||.-.+.+--+++.+++.++.+...|..++.. ++|..|++- ++.-. |.|+++|.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~i~~ll~~G~I~~v~s~---------------s~~~spv~~V~Kk~g~k~R~~vD~r------ 80 (557)
T 2zd1_A 22 KVKQWPLTEEKIKALVEICTEMEKEGKISKIGPE---------------NPYNTPVFAIKKKDSTKWRKLVDFR------ 80 (557)
T ss_dssp BCCCCCCCHHHHHHHHHHHHHHHHTTSEEECCSC---------------CCCBBCEEEEECSSCSCEEEEECCH------
T ss_pred ccCCcCCCHHHHHHHHHHHHHHHHCCCEEECCCC---------------CCCcCCeEEEECCCCCceEEEEEhH------
Confidence 3577778888888999999998888988887422 578888763 33334 999999974
Q ss_pred cccccccCcc---cchhhHHHHHHHHHHhccCCcccCHHHHhh--cccCCCCCCccceEEEeccCC-CCCceEEEEeeec
Q psy17439 85 GGYFDEFGII---RDVMQNHLLQILSLVAMEKPATIHPDDIRN--EKVHPCPEDRIHQHILWRPDP-TQEVKEFELKTVT 158 (576)
Q Consensus 85 g~sln~~l~~---gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~--~~v~v~~edr~~~rflW~~~~-~~~~~~yr~~rv~ 158 (576)
.||+.... ...-.+++-++ +..++. +.-|++. +||.+.|+|++.+.|.|.+.. ......|+|+|+|
T Consensus 81 --~LN~~t~~~~~~~~plP~i~~l----~~~~~~--s~lDl~~~y~qi~l~~~d~~~taF~~p~~~~~t~~g~y~~~~mP 152 (557)
T 2zd1_A 81 --ELNKRTQDFWEVQLGIPHPAGL----KKKKSV--TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLP 152 (557)
T ss_dssp --HHHHHBCCCCCTTSSCCCGGGS----CCCSEE--EEEECTTGGGGSBCCTTTGGGGCEEECCGGGCSCCEEEEESBCC
T ss_pred --HHhhhccccccccCCCCCchhh----cCCCee--EEehhhhhhheeEcCccccceeEEEeecCCCCCCceEEEEEeeC
Confidence 57766654 11111111121 344444 3458987 699999999999999996533 3577899999999
Q ss_pred cCCCCCHHhhhc------------------ccceeeeccccc-cHHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCC
Q psy17439 159 FGLPPSPYQAQR------------------SIYVDDIVSGAV-SISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDL 219 (576)
Q Consensus 159 FG~~~SP~ll~~------------------~~YVDD~~~~~~-~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i 219 (576)
||+++||..+++ ..||||++..++ +.+|..+..+++.+.|++.||.+. ..+
T Consensus 153 fGl~nap~~fq~~m~~il~~~~~~~~~~~v~~Y~DDIli~s~~~~~eh~~~l~~v~~~l~~~gl~l~-----~~K----- 222 (557)
T 2zd1_A 153 QGWKGSPAIFQSSMTKILEPFAAQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTP-----DKK----- 222 (557)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHTCTTEEEEEETTEEEEEECSCHHHHHHHHHHHHHHHHTTTCCCC-----CSC-----
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhcCCCceEEEEecCEEEecCchHHHHHHHHHHHHHHHHHcCCccC-----hhh-----
Confidence 999999998872 269999999888 699999999999999999999652 111
Q ss_pred CCcccCCCCcCCCCccceEeeeeeccCCCceeeeeeeccCCCCCchHHHHHhhhh-----cccccCccchhhhHHHHHHH
Q psy17439 220 PVEDCEKPHMLGSNESIKVLGIRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIAS-----IDDVNGFLSPVTVYMKMFMQ 294 (576)
Q Consensus 220 ~~~d~~~~~~~~~~~~~K~LG~~w~~~~D~l~~~~~~~~~~~~~TKR~~ls~va~-----~yDPlGl~~p~~~~~K~~lq 294 (576)
+. + ..+.++||+...+.. +.+.-..-..+...|++++.+.+.. -|=| ++. ++-|.+
T Consensus 223 ----c~----f--~~~~~fLG~~i~~~g--i~~~~~k~~~~~~~t~k~lr~flG~~~~yrrfi~-~~~------~~pl~~ 283 (557)
T 2zd1_A 223 ----HQ----K--EPPFLWMGYELHPDK--WTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYP-GIK------VRQLSK 283 (557)
T ss_dssp ----CS----C--CSSEEETTEEECSSC--EEESCCCCCCCSCEEHHHHHHHHHHHHHHTTTST-TCC------CHHHHG
T ss_pred ----cC----C--CCceEEeeEEEccCc--EEEcceecccccCCCHHHHHHHhhHHHhhhhhcc-chh------HHHHHH
Confidence 10 1 124689999987654 2221111111223488888887641 1111 111 122222
Q ss_pred HHhhhcCCCCCCCCChhHHHHHHHHHHHHhcccceeeeeeeecCCCCcceEEEeeccccc-ceeEEEEe
Q psy17439 295 QVWLIKDVSWDSPLPGTLQRKWNRLISEIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGA-AYAAVVYL 362 (576)
Q Consensus 295 ~l~~~~~~~Wd~~l~~e~~~~w~~~~~~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~-ayga~~Yl 362 (576)
.+-...+.+-.-..+++.++.+..+.+.|....-+..| + ....+.+.||||.. ++|+|.+=
T Consensus 284 ll~~~~~~~~~~~Wt~~~~~af~~lK~~L~~~p~L~~p------d-~~~~~~l~~das~~g~~g~vl~q 345 (557)
T 2zd1_A 284 LLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYY------D-PSKDLIAEIQKQGQGQWTYQIYQ 345 (557)
T ss_dssp GGTTCCCTTCEECCCHHHHHHHHHHHHHTSSCCCBCCC------C-TTSCCEEEEEEEETTEEEEEEEE
T ss_pred HhcccCCCCCceecCHHHHHHHHHHHHHHhCccceeec------C-CCCCEEEEEecCCCCcEEEEEec
Confidence 22211111111224567888888888888664332222 1 24568999999997 46888654
No 9
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=99.56 E-value=3.4e-15 Score=161.14 Aligned_cols=290 Identities=15% Similarity=0.062 Sum_probs=183.0
Q ss_pred eccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccC-CCC-cCeEEEEEeCccccCcc
Q psy17439 7 IEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWN-REN-IASVMITFKEPFGTQGR 84 (576)
Q Consensus 7 ~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n-~~~-~~kvriv~d~s~~~~~r 84 (576)
--||.-.+.+--+++.+++.++.+.+.|..++.. ++|..|++- ++. -+|.|+++|.+.--+
T Consensus 20 ~~~~~~~~~~~~~~~~~~i~~ll~~G~I~~v~s~---------------s~~~sPv~~V~Kk~g~k~R~~vD~r~LN~-- 82 (428)
T 2zd1_B 20 KVKQWPLTEEKIKALVEICTEMEKEGKISKIGPE---------------NPYNTPVFAIKKKDSTKWRKLVDFRELNK-- 82 (428)
T ss_dssp BCCCCCCCHHHHHHHHHHHHHHHHTTSEEECCTT---------------CCCBBCEEEECCTTCSSCEEEECTHHHHH--
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHHCCCceECCCC---------------CCccCceeeccCCCCCceEEEEechHhcC--
Confidence 3577777888889999999999999998887532 578888764 222 358999999863211
Q ss_pred cccc---cccCcccchhhHHHHHHHHHHhccCCcccCHHHHhh--cccCCCCCCccceEEEeccCC-CCCceEEEEeeec
Q psy17439 85 GGYF---DEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIRN--EKVHPCPEDRIHQHILWRPDP-TQEVKEFELKTVT 158 (576)
Q Consensus 85 g~sl---n~~l~~gp~l~~~Ll~iL~r~r~~~~~~~~~~DI~~--~~v~v~~edr~~~rflW~~~~-~~~~~~yr~~rv~ 158 (576)
.... |.+.+..+. + ++..++. +.-|++. +||.+.|+|++.+.|.|.+.. ......|+|+|+|
T Consensus 83 ~t~~~~~~~~plP~i~------~----l~~~~~~--s~lDl~~gy~qI~l~~~d~~~taF~~p~~~~~t~~g~y~~~vmP 150 (428)
T 2zd1_B 83 RTQDFWEVQLGIPHPA------G----LKKKKSV--TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLP 150 (428)
T ss_dssp HBCCCCCTTSCCCCCT------T----GGGSSEE--EEEECGGGGGGSBCCTTTGGGGCEEECCGGGCSCCEEEEESBCC
T ss_pred cccccccccCCCCCch------h----ccccceE--EEeeccCceeeEEcCccccceeEEEeecCCCCCCCceEEEEeeC
Confidence 1111 333332222 1 2444544 3458987 699999999999999996633 3567899999999
Q ss_pred cCCCCCHHhhhc------------------ccceeeecccccc-HHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCC
Q psy17439 159 FGLPPSPYQAQR------------------SIYVDDIVSGAVS-ISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDL 219 (576)
Q Consensus 159 FG~~~SP~ll~~------------------~~YVDD~~~~~~~-~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i 219 (576)
||+++||..+++ ..||||++..+++ .+|+.+..+++.+.|++.||.+.. .++
T Consensus 151 fGl~nsPa~fq~~m~~il~~~~~~~~~~~v~vY~DDIlI~s~~~~~eh~~~l~~v~~~l~~~gL~l~~-----~Kc---- 221 (428)
T 2zd1_B 151 QGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPD-----KKH---- 221 (428)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHCTTCEEEEETTEEEEEECSCHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred CCCcchHHHHHHHHHHHHHHHhhcCCCceEEEEecceEEecCCcHHHHHHHHHHHHHHHHHhCCccCh-----hHc----
Confidence 999999998872 2599999998884 799999999999999999996521 111
Q ss_pred CCcccCCCCcCCCCccceEeeeeeccCCCceeeeeeeccCCCCCchHHHHHhhh------hcccccCccchhhhHHHHHH
Q psy17439 220 PVEDCEKPHMLGSNESIKVLGIRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIA------SIDDVNGFLSPVTVYMKMFM 293 (576)
Q Consensus 220 ~~~d~~~~~~~~~~~~~K~LG~~w~~~~D~l~~~~~~~~~~~~~TKR~~ls~va------~~yDPlGl~~p~~~~~K~~l 293 (576)
. . ....++||+...+..-++ .-.......+.|++++.+.+. +++--.+ +.| |.
T Consensus 222 -----~----~--~~~~~fLG~~i~~~~i~~--~~~ki~~~~~~t~k~lr~flG~~~yyrrFi~~~s-~~p-------L~ 280 (428)
T 2zd1_B 222 -----Q----K--EPPFLWMGYELHPDKWTV--QPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIK-VRQ-------LS 280 (428)
T ss_dssp ----------------CTTCCEEECGGGCCC--CCCCCCCCSSEEHHHHHHHHHHHHHHTTTCTTCC-CHH-------HH
T ss_pred -----c----c--cceEEEeccEecCCceEe--cccccccccccCHHHHHHHhhhHHHHHHhcCCcc-HHH-------HH
Confidence 0 0 123478999987543221 100011122458888877663 2221111 223 22
Q ss_pred HHHhhhcCCCCCCCCChhHHHHHHHHHHHHhcccceeeeeeeecCCCCcceEEEeeccccc-ceeEEEEe
Q psy17439 294 QQVWLIKDVSWDSPLPGTLQRKWNRLISEIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGA-AYAAVVYL 362 (576)
Q Consensus 294 q~l~~~~~~~Wd~~l~~e~~~~w~~~~~~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~-ayga~~Yl 362 (576)
+.+-...+++-.-..+++.++.+..+.+.|....-+..| ..+..+.+.||||.. ++|+|.+-
T Consensus 281 ~llkk~~~~~~~~~Wt~~~~~af~~lK~~L~~~p~l~~p-------d~~~~~~l~~das~~g~~g~vl~q 343 (428)
T 2zd1_B 281 KLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYY-------DPSKDLIAEIQKQGQGQWTYQIYQ 343 (428)
T ss_dssp HTTCSCCCTTCEECCCHHHHHHHHHHHHHTTSCCTTCCC-------CTTSCCEEEEEEEETTEEEEEEES
T ss_pred HHHccCCCCCCeecCCHHHHHHHHHHHHHHhcchhcccc-------CCCCCEEEEEecCCCCcEEEEEec
Confidence 222111110011123567888888888887653322222 135679999999995 77888763
No 10
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.54 E-value=9.9e-15 Score=162.38 Aligned_cols=289 Identities=11% Similarity=0.036 Sum_probs=180.9
Q ss_pred ccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccC-CCC-cCeEEEEEeCccccCccc
Q psy17439 8 EKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWN-REN-IASVMITFKEPFGTQGRG 85 (576)
Q Consensus 8 Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n-~~~-~~kvriv~d~s~~~~~rg 85 (576)
.||.-.+.+--+++.+++.++.+...|..+++. ++|..|++= ++. -+|.|+++|.+
T Consensus 21 ~~~~~~~~~~~~~~~~~i~~ll~~G~I~~~~~~---------------s~~~spv~~V~Kk~g~k~R~~vD~r------- 78 (555)
T 1mu2_A 21 LRQWPLTKEKIEALKEICEKMEKEGQLEEAPPT---------------NPYNTPTFAIKKKDKNKWRMLIDFR------- 78 (555)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTSEEECCTT---------------CCCBBCEEECCCCC----CEEECTH-------
T ss_pred cCCcCCCHHHHHHHHHHHHHHHHCCCeEECCCC---------------CCCCCceEEecCCCCCceEEEEehH-------
Confidence 467777888888888888888888888877432 578888764 222 24899999975
Q ss_pred ccccccCccc---chhhHHHHHHHHHHhccCCcccCHHHHhh--cccCCCCCCccceEEEecc-CCCCCceEEEEeeecc
Q psy17439 86 GYFDEFGIIR---DVMQNHLLQILSLVAMEKPATIHPDDIRN--EKVHPCPEDRIHQHILWRP-DPTQEVKEFELKTVTF 159 (576)
Q Consensus 86 ~sln~~l~~g---p~l~~~Ll~iL~r~r~~~~~~~~~~DI~~--~~v~v~~edr~~~rflW~~-~~~~~~~~yr~~rv~F 159 (576)
.||+..... ..-..++-+ ++..++. +.-|++. +||.+.|+|++.+.|.|.+ +..+....|+|+|+||
T Consensus 79 -~LN~~t~~~~~~~~~lP~~~~----l~~~~~~--s~lDl~~~y~qI~l~~~d~~~taF~~p~~~~~~~~g~y~~~~mPf 151 (555)
T 1mu2_A 79 -ELNKVTQDFTEIQLGIPHPAG----LAKKRRI--TVLDVGDAYFSIPLHEDFRPYTAFTLPSVNNAEPGKRYIYKVLPQ 151 (555)
T ss_dssp -HHHHHBCCCCCCCCSCCCGGG----SBCCSEE--EEEECBSSGGGSBCCTTTGGGGCEEC---------CEEEESBCCT
T ss_pred -HhhhhCcccccccCCCCchhh----cCCCceE--EEehhHhcceEEEeccCceeeeEEEeecCCCCCCceEEEEEEeCC
Confidence 455544321 000111111 1444444 3458987 6999999999999999965 3334667999999999
Q ss_pred CCCCCHHhhhc------------------ccceeeeccccc-cHHHHHHHHHHHHHHHhhcCCceeeeeccchhhccCCC
Q psy17439 160 GLPPSPYQAQR------------------SIYVDDIVSGAV-SISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLP 220 (576)
Q Consensus 160 G~~~SP~ll~~------------------~~YVDD~~~~~~-~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~v~~~i~ 220 (576)
|+++||..+++ ..||||++..++ +.+|..+..+++.+.|++.||.+. ..++ .
T Consensus 152 Gl~napa~fq~~m~~il~~~~~~~~~~~v~~Y~DDIli~s~~~~~eh~~~l~~v~~~l~~~gl~l~-----~~K~-~--- 222 (555)
T 1mu2_A 152 GWKGSPAIFQHTMRQVLEPFRKANKDVIIIQYMDDILIASDRTDLEHDRVVLQLKELLNGLGFSTP-----DEKF-Q--- 222 (555)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHCTTSEEEEETTEEEEEECSCHHHHHHHHHHHHHHHHHTTCBCC-----STTE-E---
T ss_pred CCCCcHHHHHHHHHHHHHHHHhhCCCcEEEEEecceEEecCCCHHHHHHHHHHHHHHHHHcCCccC-----HHHh-c---
Confidence 99999998872 259999999888 799999999999999999999652 1111 0
Q ss_pred CcccCCCCcCCCCccceEeeeeeccCCCceeeeeeeccCCCCCchHHHHHhhhhc------ccccCccchhhhHHHHHHH
Q psy17439 221 VEDCEKPHMLGSNESIKVLGIRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIASI------DDVNGFLSPVTVYMKMFMQ 294 (576)
Q Consensus 221 ~~d~~~~~~~~~~~~~K~LG~~w~~~~D~l~~~~~~~~~~~~~TKR~~ls~va~~------yDPlGl~~p~~~~~K~~lq 294 (576)
..+..++||+...+.. +.+.-..-....+.|++++-+.+..+ +--+. ..|+. .
T Consensus 223 -----------~~~~~~fLG~~i~~~g--i~~~~~ki~~i~~~t~k~lr~flG~~~~~rrfi~~~~-~~pL~-------~ 281 (555)
T 1mu2_A 223 -----------KDPPYHWMGYELWPTK--WKLQKIQLPQKEIWTVNDIQKLVGVLNWAAQLYPGIK-TKHLC-------R 281 (555)
T ss_dssp -----------CSSSEEETTEEECSSE--EEECCCCCCCCSSCBHHHHHHHHHHHHHHHHHSTTCC-CHHHH-------T
T ss_pred -----------cCCceeEEeEEEeCCc--eeccccccCcCCCCCHHHHHhHhhhhhhhhhccCccc-hHHHH-------H
Confidence 1235699999987543 32221111112356888877765322 11111 22221 1
Q ss_pred HHhhhcCCCCCCCCChhHHHHHHHHHHHHhcccceeeeeeeecCCCCcceEEEeeccccc-ceeEEEEe
Q psy17439 295 QVWLIKDVSWDSPLPGTLQRKWNRLISEIHQLSEIKIPRFVLCSDYLSLDLIGFGDASGA-AYAAVVYL 362 (576)
Q Consensus 295 ~l~~~~~~~Wd~~l~~e~~~~w~~~~~~l~~~~~i~ipR~l~~~~~~~~~L~~F~DAS~~-ayga~~Yl 362 (576)
.+-..++++-.-..+++.++.+..+.+.|....-+..|. .+..+.++||||.. |+|||.+=
T Consensus 282 llk~~~~~~~~~~wt~~~~~af~~lK~~L~~~p~L~~p~-------~~~~~~l~~das~~ga~g~vl~Q 343 (555)
T 1mu2_A 282 LISGKMTLTEEVQWTELAEAELEENRIILSQEQEGHYYQ-------EEKELEATVQKDQDNQWTYKIHQ 343 (555)
T ss_dssp TSCSSSCTTCBCCCCHHHHHHHHHHHHHHSCCEEEECBC-------TTSCCEEEEEECSSSCEEEEEEE
T ss_pred HhccCCCCCCcccCCHHHHHHHHHHHHHHhhCccccccC-------CCCCEEEEEecCCCCcEEEEEee
Confidence 111110111112235778889999999887643332222 24578999999999 59998764
No 11
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=99.53 E-value=4.4e-15 Score=149.23 Aligned_cols=171 Identities=14% Similarity=0.092 Sum_probs=138.9
Q ss_pred ccCCCCCHHHHHHHHHHHhccCCCcceEeeccchhHHHHHhhhhhhccccccccccC-CCC-cCeEEEEEeCccccCccc
Q psy17439 8 EKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTWN-REN-IASVMITFKEPFGTQGRG 85 (576)
Q Consensus 8 Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridhylgk~~v~~~~~~r~~n~~~~p~~n-~~~-~~kvriv~d~s~~~~~rg 85 (576)
.||.-.+.+--+++.+.+.++.+...|... .++|..|++= ++. .+|.|+++|.+
T Consensus 38 ~~~~~~~~~~~~~~~~~i~~ll~~G~I~~~-----------------~sp~~sp~~~V~Kk~~g~~R~~~D~r------- 93 (255)
T 3fsi_A 38 IKQYPMSQEARLGIKPHIQRLLDQGILVPC-----------------QSPWNTPLLPVKKPGTNDYRPVQDLR------- 93 (255)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHTTSEEEE-----------------CCSCBCCBCCC-------CCCCBCCH-------
T ss_pred CCCccCCHHHHHHHHHHHHHHHhCCeEEec-----------------CCCeECceeEeecCCCCceeEEeEhh-------
Confidence 467777788888888888888777777643 2568888764 222 58999998874
Q ss_pred ccccccCcccchhhHHHHHHHHHHh-ccCCcccCHHHHhh--cccCCCCCCccceEEEeccCCCCCceEEEEeeeccCCC
Q psy17439 86 GYFDEFGIIRDVMQNHLLQILSLVA-MEKPATIHPDDIRN--EKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVTFGLP 162 (576)
Q Consensus 86 ~sln~~l~~gp~l~~~Ll~iL~r~r-~~~~~~~~~~DI~~--~~v~v~~edr~~~rflW~~~~~~~~~~yr~~rv~FG~~ 162 (576)
.||+....++....++-++|.+++ ..++. +.-|++. +||.+.++|++.+.|.|.+..+.....|+|+|+|||++
T Consensus 94 -~LN~~t~~~~~~lp~~~~ll~~l~~~~~~~--s~lDl~~~y~qI~l~~~d~~~taF~~~~~~~t~~g~y~~~~mPfGl~ 170 (255)
T 3fsi_A 94 -EVNKRVEDIHPTVPNPYNLLSGLPPSHQWY--TVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFK 170 (255)
T ss_dssp -HHHTTBCCCCCCSCCHHHHHTTCCTTCCEE--EEEEBTTCGGGSBBCTTTGGGGCEECCCSSSCCSSEEEESBCCTTCT
T ss_pred -hhccccccCCCCCCcHHHHHHHhhcCCcEE--EEccccceeEeeecCccccCceEEEecCCCCCccceEEEEEeCCCCC
Confidence 799999888888888889888776 44544 4569988 59999999999999999876667788999999999999
Q ss_pred CCHHhhhc------------------ccceeeeccccccHHHHHHHHHHHHHHHhhcCCce
Q psy17439 163 PSPYQAQR------------------SIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVL 205 (576)
Q Consensus 163 ~SP~ll~~------------------~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~l 205 (576)
+||+++++ ..||||++..+++.+|+.+..+++.+.|+++||.+
T Consensus 171 ~sP~~fq~~m~~il~~~~~~~~~~~v~~Y~DDili~s~~~eeh~~~l~~v~~~L~~~gl~l 231 (255)
T 3fsi_A 171 NSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRA 231 (255)
T ss_dssp THHHHHHHHHHHHTHHHHHHCTTCEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHHTCCB
T ss_pred CcHHHHHHHHHHHHHHHHHhCcCcEEEEEcCCeEEEeCCHHHHHHHHHHHHHHHHHCCeEE
Confidence 99998873 36999999999999999999999999999999976
No 12
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=59.71 E-value=7.5 Score=42.30 Aligned_cols=83 Identities=14% Similarity=0.026 Sum_probs=59.3
Q ss_pred EeeeccCCCCCHHhhh-------c------------ccceeeeccccccHHHHHHHHHHHHHHHhhcCCceeeeeccchh
Q psy17439 154 LKTVTFGLPPSPYQAQ-------R------------SIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPE 214 (576)
Q Consensus 154 ~~rv~FG~~~SP~ll~-------~------------~~YVDD~~~~~~~~~ea~~~~~~~~~~~~~~gf~lrk~~sN~~~ 214 (576)
-..+|=|...||.|++ + -=|+||.+..+.+.++|.+..+.+... .-.|..|-..|.+.
T Consensus 303 ekGTPQGGVISPLLANIYLheLDkel~~~l~kd~~LVRYADDFVIi~~Ske~Aerfl~~Lkg~---leLNpEKTrInF~~ 379 (596)
T 3kyl_A 303 NHGLLQGDPLSGCLCELYMAFMDRLYFSNLDKDAFIHRTVDDYFFCSPHPHKVYDFELLIKGV---YQVNPTKTRTNLPT 379 (596)
T ss_dssp CSSSCBTCTTHHHHHHHHHHHHHHHHSTTSCTTSEEEECSSEEEEEESCHHHHHHHHHHHHHH---SCEEEEEEEECCTT
T ss_pred CCcccCCcchhHHHHHHHHHHHHHHHHHhhccCceEEEEcCcEEEEECCHHHHHHHHHHhhCc---ceECchhceeeccc
Confidence 3567999999999987 1 139999999999999999988865544 24455555555544
Q ss_pred hccCCCCcccCCCCcCCCCccceEeeeeeccCCCceeee
Q psy17439 215 VLSDLPVEDCEKPHMLGSNESIKVLGIRWCPKSDSFFNS 253 (576)
Q Consensus 215 v~~~i~~~d~~~~~~~~~~~~~K~LG~~w~~~~D~l~~~ 253 (576)
.. +| .....++|+.+|+.|=.+...
T Consensus 380 ~~--lp------------~~~fpwCGLLIDtkTLEI~kD 404 (596)
T 3kyl_A 380 HR--HP------------QDEIPYCGKIFNLTTRQVRTL 404 (596)
T ss_dssp SS--SC------------CSEEEETTEEEETTTCCEEEC
T ss_pred cc--CC------------CceeeeeeEEEECCEEEEEeC
Confidence 20 11 234689999999988666553
No 13
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=42.56 E-value=13 Score=37.68 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.4
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|.+|||++.+++.|++|.+...+
T Consensus 101 hVl~EKPla~t~~ea~~l~~~~~~ 124 (390)
T 4h3v_A 101 HVLCEKPLANTVAEAEAMAAAAAK 124 (390)
T ss_dssp EEEEESSSCSSHHHHHHHHHHHHH
T ss_pred CceeecCcccchhHHHHHHHHHHH
Confidence 488999999999999999766543
No 14
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=35.77 E-value=22 Score=35.64 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=21.1
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.|++|.+.-++
T Consensus 98 hVl~EKPla~~~~ea~~l~~~a~~ 121 (312)
T 3o9z_A 98 NALSEKPLVLWPEEIARLKELEAR 121 (312)
T ss_dssp EEEECSSSCSCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999887664
No 15
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=35.74 E-value=21 Score=36.12 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.2
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|.+|||++.+++.|++|-+.-++
T Consensus 120 hVl~EKPla~~~~ea~~l~~~a~~ 143 (393)
T 4fb5_A 120 HVWCEKPMAPAYADAERMLATAER 143 (393)
T ss_dssp EEEECSCSCSSHHHHHHHHHHHHH
T ss_pred eEEEccCCcccHHHHHHhhhhHHh
Confidence 478999999999999999987763
No 16
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=33.67 E-value=24 Score=35.37 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.1
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|.+|||++.+++.+++|-+.-++
T Consensus 99 hVl~EKPla~~~~ea~~l~~~a~~ 122 (318)
T 3oa2_A 99 DVICEKPLVPTPEMLDQLAVIERE 122 (318)
T ss_dssp EEEECSSCCSCHHHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHHHH
Confidence 488999999999999999987664
No 17
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=30.17 E-value=30 Score=35.13 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.4
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.|++|.+..++
T Consensus 115 ~Vl~EKP~a~~~~ea~~l~~~a~~ 138 (350)
T 3rc1_A 115 HVLAEKPLTTDRPQAERLFAVARE 138 (350)
T ss_dssp EEEEESSSCSSHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999987764
No 18
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=30.06 E-value=21 Score=35.95 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.3
Q ss_pred EEEeccCCCCCHHHHHHHHHHHh
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLG 26 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~ 26 (576)
-|.+|||++.+++.|++|-+.-+
T Consensus 112 hVl~EKPla~~~~ea~~l~~~a~ 134 (350)
T 4had_A 112 HVVCEKPLALKAGDIDAVIAARD 134 (350)
T ss_dssp EEEECSCCCSSGGGGHHHHHHHH
T ss_pred EEEEeCCcccchhhHHHHHHHHH
Confidence 47899999999999999987665
No 19
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=29.15 E-value=32 Score=34.44 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.2
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.|++|.+..++
T Consensus 92 hVl~EKP~a~~~~e~~~l~~~a~~ 115 (334)
T 3ohs_X 92 AVLCEKPMGVNAAEVREMVTEARS 115 (334)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999987763
No 20
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=28.99 E-value=32 Score=34.62 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.8
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|.+|||++.+++.+++|.+..++
T Consensus 107 hVl~EKP~a~~~~e~~~l~~~a~~ 130 (330)
T 4ew6_A 107 HVFLEKPPGATLSEVADLEALANK 130 (330)
T ss_dssp EEEECSSSCSSHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999886653
No 21
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=28.68 E-value=33 Score=34.46 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=21.2
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|.+|||++.+++.|++|.+..++
T Consensus 93 hVl~EKPla~~~~ea~~l~~~a~~ 116 (337)
T 3ip3_A 93 HAFVEKPIATTFEDLEKIRSVYQK 116 (337)
T ss_dssp EEEECSSSCSSHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999987664
No 22
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}
Probab=28.45 E-value=33 Score=34.55 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.3
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.+++|-+..++
T Consensus 91 ~Vl~EKP~a~~~~e~~~l~~~a~~ 114 (345)
T 3f4l_A 91 NVLVEKPFTPTLAQAKELFALAKS 114 (345)
T ss_dssp EEEECSSSCSSHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999887764
No 23
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=28.02 E-value=35 Score=34.81 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=25.7
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhccCCCcceEeecc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDH 39 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~ridh 39 (576)
-|.+|||++.+++.|++|-+..++ .+.++-+.|
T Consensus 114 hVl~EKPla~~~~ea~~l~~~a~~---~g~~l~v~~ 146 (361)
T 3u3x_A 114 DVLVDKPGMTSFDQLAKLRRVQAE---TGRIFSILY 146 (361)
T ss_dssp EEEEESCSCSSHHHHHHHHHHHHT---TCCCEEEEC
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHH---cCCEEEEec
Confidence 488999999999999999987773 344454544
No 24
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=27.99 E-value=33 Score=34.85 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.2
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.|++|.+..++
T Consensus 91 hVl~EKP~a~~~~ea~~l~~~a~~ 114 (362)
T 3fhl_A 91 NVVVEKPFTSTTKQGEELIALAKK 114 (362)
T ss_dssp EEEEESSCCSSHHHHHHHHHHHHH
T ss_pred eEEEecCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999887664
No 25
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=27.94 E-value=35 Score=33.71 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=21.0
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||+..+++.+++|.+..++
T Consensus 91 hVl~EKPla~~~~ea~~l~~~a~~ 114 (294)
T 1lc0_A 91 HVLVEYPMTLSFAAAQELWELAAQ 114 (294)
T ss_dssp EEEEESCSCSCHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHH
Confidence 478899999999999999987764
No 26
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=27.04 E-value=37 Score=34.22 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.2
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|.+|||++.+++.|++|.+.-++
T Consensus 108 hVl~EKPla~~~~ea~~l~~~a~~ 131 (340)
T 1zh8_A 108 HVICEKPISTDVETGKKVVELSEK 131 (340)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999987763
No 27
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=26.91 E-value=37 Score=33.97 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.1
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.+++|.+..++
T Consensus 93 ~Vl~EKP~a~~~~e~~~l~~~a~~ 116 (329)
T 3evn_A 93 HVLVEKPFTLTYDQANELFALAES 116 (329)
T ss_dssp EEEEESSCCSSHHHHHHHHHHHHH
T ss_pred eEEEccCCcCCHHHHHHHHHHHHH
Confidence 488999999999999999887664
No 28
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=26.87 E-value=37 Score=34.62 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.3
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.+++|.+..++
T Consensus 93 ~Vl~EKPla~~~~e~~~l~~~a~~ 116 (364)
T 3e82_A 93 HVVVDKPFTLDMQEARELIALAEE 116 (364)
T ss_dssp EEEECSCSCSSHHHHHHHHHHHHH
T ss_pred cEEEeCCCcCCHHHHHHHHHHHHH
Confidence 488999999999999999987764
No 29
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=26.68 E-value=37 Score=34.25 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.2
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.+++|.+..++
T Consensus 91 ~Vl~EKP~a~~~~e~~~l~~~a~~ 114 (349)
T 3i23_A 91 SVIVEKPFCDTLEHAEELFALGQE 114 (349)
T ss_dssp EEEECSCSCSSHHHHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHHHHH
Confidence 478999999999999999987764
No 30
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=26.61 E-value=36 Score=35.19 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEeccCCCCCHHHHHHHHHHHh
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLG 26 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~ 26 (576)
-|.+|||++.+++.|++|-+.-+
T Consensus 122 hVl~EKP~a~~~~ea~~l~~~a~ 144 (412)
T 4gqa_A 122 HVYCEKPLAVNEQQAQEMAQAAR 144 (412)
T ss_dssp EEEEESCSCSSHHHHHHHHHHHH
T ss_pred CeEeecCCcCCHHHHHHHHHHHH
Confidence 47899999999999999988665
No 31
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=26.40 E-value=37 Score=34.48 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.2
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.|++|.+..++
T Consensus 91 hVl~EKPla~~~~e~~~l~~~a~~ 114 (358)
T 3gdo_A 91 HVVMEKPMTATAEEGETLKRAADE 114 (358)
T ss_dssp EEEEESSCCSSHHHHHHHHHHHHH
T ss_pred eEEEecCCcCCHHHHHHHHHHHHH
Confidence 578999999999999999887764
No 32
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=25.65 E-value=40 Score=33.70 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.3
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.+++|.+..++
T Consensus 93 ~vl~EKP~~~~~~e~~~l~~~a~~ 116 (330)
T 3e9m_A 93 PVLLEKPFTLNAAEAEELFAIAQE 116 (330)
T ss_dssp CEEECSSCCSSHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999987764
No 33
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=25.48 E-value=41 Score=34.71 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.3
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.|++|-+..++
T Consensus 111 hVl~EKPla~~~~ea~~l~~~a~~ 134 (398)
T 3dty_A 111 HVVCEKPLCFTVEQAENLRELSHK 134 (398)
T ss_dssp EEEECSCSCSCHHHHHHHHHHHHH
T ss_pred eEEEeCCCcCCHHHHHHHHHHHHH
Confidence 478999999999999999987764
No 34
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=25.31 E-value=41 Score=33.81 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.1
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.|++|.+..++
T Consensus 92 ~vl~EKP~a~~~~e~~~l~~~a~~ 115 (344)
T 3mz0_A 92 YVFCEKPLATTAEGCMRIVEEEIK 115 (344)
T ss_dssp EEEECSCSCSSHHHHHHHHHHHHH
T ss_pred cEEEcCCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999987653
No 35
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=25.27 E-value=42 Score=33.07 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.1
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.+++|.+..++
T Consensus 92 ~vl~EKP~~~~~~~~~~l~~~a~~ 115 (308)
T 3uuw_A 92 HVYVDKPLASTVSQGEELIELSTK 115 (308)
T ss_dssp EEEECSSSSSSHHHHHHHHHHHHH
T ss_pred cEEEcCCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999987764
No 36
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=25.18 E-value=40 Score=34.26 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.2
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.|++|.+..++
T Consensus 91 hVl~EKP~a~~~~ea~~l~~~a~~ 114 (359)
T 3e18_A 91 HVVCEKPVTMTSEDLLAIMDVAKR 114 (359)
T ss_dssp EEEEESSCCSSHHHHHHHHHHHHH
T ss_pred CEEeeCCCcCCHHHHHHHHHHHHH
Confidence 588999999999999999887664
No 37
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=25.08 E-value=42 Score=33.84 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.3
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.+++|.+..++
T Consensus 93 hV~~EKPla~~~~e~~~l~~~a~~ 116 (352)
T 3kux_A 93 HVVVDKPFTVTLSQANALKEHADD 116 (352)
T ss_dssp EEEECSSCCSCHHHHHHHHHHHHH
T ss_pred cEEEECCCcCCHHHHHHHHHHHHH
Confidence 488999999999999999987764
No 38
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=24.14 E-value=45 Score=33.31 Aligned_cols=24 Identities=8% Similarity=0.081 Sum_probs=20.9
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||+..+++.|++|.+..++
T Consensus 92 hVl~EKP~a~~~~e~~~l~~~a~~ 115 (336)
T 2p2s_A 92 DFFTAKPPLTTLEQLDAVQRRVAE 115 (336)
T ss_dssp EEEECSSCCSCHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHH
Confidence 378899999999999999987764
No 39
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=23.86 E-value=45 Score=33.99 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.3
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.+++|.+..++
T Consensus 109 ~V~~EKP~a~~~~~~~~l~~~a~~ 132 (383)
T 3oqb_A 109 HVYCEKPIATNFEEALEVVKLANS 132 (383)
T ss_dssp EEEECSCSCSSHHHHHHHHHHHHH
T ss_pred eEEEcCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999987764
No 40
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=23.33 E-value=46 Score=33.54 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=21.2
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.+++|.+..++
T Consensus 92 ~vl~EKP~~~~~~~~~~l~~~a~~ 115 (354)
T 3db2_A 92 HIYVEKPISVSLDHAQRIDQVIKE 115 (354)
T ss_dssp EEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EEEEccCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999887764
No 41
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=23.27 E-value=46 Score=33.75 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.1
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.|++|.+..++
T Consensus 113 ~Vl~EKPla~~~~e~~~l~~~a~~ 136 (357)
T 3ec7_A 113 YVFCEKPLAVTAADCQRVIEAEQK 136 (357)
T ss_dssp EEEEESSSCSSHHHHHHHHHHHHH
T ss_pred CEEeecCccCCHHHHHHHHHHHHH
Confidence 588999999999999999987653
No 42
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=23.00 E-value=49 Score=32.96 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.4
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.+++|.+..++
T Consensus 89 ~v~~EKP~~~~~~~~~~l~~~a~~ 112 (331)
T 4hkt_A 89 AIFCEKPIDLDAERVRACLKVVSD 112 (331)
T ss_dssp EEEECSCSCSSHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999987764
No 43
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=22.79 E-value=54 Score=32.84 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.+++|.+..++
T Consensus 91 ~v~~EKP~~~~~~~~~~l~~~a~~ 114 (344)
T 3euw_A 91 PALCEKPIDLDIEMVRACKEKIGD 114 (344)
T ss_dssp CEEECSCSCSCHHHHHHHHHHHGG
T ss_pred cEEEECCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999987763
No 44
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=22.01 E-value=54 Score=33.14 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=20.6
Q ss_pred EEEeccCCCCCHHHHHHHHHHHh
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLG 26 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~ 26 (576)
-|++|||++.+++.+++|.+..+
T Consensus 97 ~V~~EKP~a~~~~e~~~l~~~a~ 119 (362)
T 1ydw_A 97 HILLEKPVAMNVTEFDKIVDACE 119 (362)
T ss_dssp EEEECSSCSSSHHHHHHHHHHHH
T ss_pred eEEEecCCcCCHHHHHHHHHHHH
Confidence 47889999999999999998776
No 45
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=21.83 E-value=52 Score=33.40 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=21.0
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|.+|||++.+++.+++|.+..++
T Consensus 94 hVl~EKPla~~~~e~~~l~~~a~~ 117 (359)
T 3m2t_A 94 NVFVEKPPCATLEELETLIDAARR 117 (359)
T ss_dssp EEEECSCSCSSHHHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHHHH
Confidence 478999999999999999887664
No 46
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=21.73 E-value=52 Score=34.25 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.4
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|.+|||++.+++.|++|.+..++
T Consensus 136 hVl~EKPla~~~~ea~~l~~~a~~ 159 (417)
T 3v5n_A 136 HVICDKPLTSTLADAKKLKKAADE 159 (417)
T ss_dssp EEEEESSSCSSHHHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHHHH
Confidence 488999999999999999987764
No 47
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=21.55 E-value=44 Score=28.66 Aligned_cols=12 Identities=8% Similarity=0.133 Sum_probs=9.9
Q ss_pred ceEEEeeccccc
Q psy17439 343 LDLIGFGDASGA 354 (576)
Q Consensus 343 ~~L~~F~DAS~~ 354 (576)
..+.+|||||-.
T Consensus 2 ~~~~iy~DGs~~ 13 (141)
T 3hst_B 2 VKVVIEADGGSR 13 (141)
T ss_dssp CEEEEEEEEEES
T ss_pred cEEEEEEecCCC
Confidence 468999999865
No 48
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=21.46 E-value=94 Score=29.25 Aligned_cols=21 Identities=14% Similarity=0.529 Sum_probs=15.8
Q ss_pred CCccceEeeeeeccCCCceee
Q psy17439 232 SNESIKVLGIRWCPKSDSFFN 252 (576)
Q Consensus 232 ~~~~~K~LG~~w~~~~D~l~~ 252 (576)
+..-..+|.+-|||.+-++..
T Consensus 49 etGGvHWiA~Aw~P~s~~~Ym 69 (204)
T 4ekf_A 49 ETGGVHWMAFAWNPRSKTCYL 69 (204)
T ss_dssp ---CCCEEEEEEETTTTEEEE
T ss_pred ccCceeEEEeEecCCcceEEE
Confidence 345679999999999998865
No 49
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=21.08 E-value=56 Score=32.44 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.1
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+.+.+++|.+..++
T Consensus 88 ~V~~EKP~~~~~~~~~~l~~~a~~ 111 (325)
T 2ho3_A 88 HVILEKPAVSQPQEWFDLIQTAEK 111 (325)
T ss_dssp EEEEESSCCSSHHHHHHHHHHHHH
T ss_pred cEEEecCCcCCHHHHHHHHHHHHH
Confidence 478899999999999999987764
No 50
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=20.96 E-value=56 Score=32.90 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.3
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.+++|.+..++
T Consensus 101 ~v~~EKP~a~~~~~~~~l~~~a~~ 124 (354)
T 3q2i_A 101 HVMTEKPMATRWEDGLEMVKAADK 124 (354)
T ss_dssp EEEECSSSCSSHHHHHHHHHHHHH
T ss_pred CEEEeCCCcCCHHHHHHHHHHHHH
Confidence 588999999999999999887763
No 51
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=20.81 E-value=78 Score=33.12 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=25.3
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHhccCCCcceEeec
Q psy17439 3 TRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRID 38 (576)
Q Consensus 3 ~r~~~Ekpfg~d~~sa~~l~~~~~~~~~e~~i~rid 38 (576)
.-|++|||++.+++.+++|.+..++ ...++-+.
T Consensus 120 khVl~EKP~a~~~~e~~~l~~~a~~---~g~~~~v~ 152 (438)
T 3btv_A 120 KYLFVEWALACSLDQAESIYKAAAE---RGVQTIIS 152 (438)
T ss_dssp CEEEEESSCCSSHHHHHHHHHHHHT---TTCEEEEE
T ss_pred eeEEecCcccCCHHHHHHHHHHHHH---cCCeEEEe
Confidence 3588999999999999999988763 34444444
No 52
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=20.45 E-value=59 Score=32.15 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=20.9
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||++.+++.+++|.+..++
T Consensus 91 ~v~~eKP~~~~~~~~~~l~~~a~~ 114 (319)
T 1tlt_A 91 HVCVDKPLAENLRDAERLVELAAR 114 (319)
T ss_dssp EEEEESSSCSSHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999987664
No 53
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=20.13 E-value=59 Score=33.31 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEeccCCCCCHHHHHHHHHHHhc
Q psy17439 4 RVIIEKPFGKDSDSSRHLSNHLGA 27 (576)
Q Consensus 4 r~~~Ekpfg~d~~sa~~l~~~~~~ 27 (576)
-|++|||+..+++.+++|.+..++
T Consensus 90 ~Vl~EKP~a~~~~e~~~l~~~a~~ 113 (387)
T 3moi_A 90 HIIVEKPLTLSRDEADRMIEAVER 113 (387)
T ss_dssp EEEECSCCCSCHHHHHHHHHHHHH
T ss_pred ceeeeCCccCCHHHHHHHHHHHHH
Confidence 488999999999999999987764
Done!