RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17439
(576 letters)
>gnl|CDD|240353 PTZ00309, PTZ00309, glucose-6-phosphate 1-dehydrogenase;
Provisional.
Length = 542
Score = 255 bits (654), Expect = 5e-78
Identities = 90/127 (70%), Positives = 105/127 (82%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
GW RVI+EKPFG+D +SS LSN L LF E Q+YRIDHYLGKEMVQNL+ +RF NR+F
Sbjct: 193 GWVRVIVEKPFGRDLESSEELSNQLEPLFDESQLYRIDHYLGKEMVQNLIVLRFANRVFE 252
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
P WNR NIA V ITFKE GT+GRGGYFD +GIIRDVMQNHLLQIL+L+AMEKP ++ +
Sbjct: 253 PLWNRNNIACVQITFKEDIGTEGRGGYFDSYGIIRDVMQNHLLQILALLAMEKPVSLSAE 312
Query: 121 DIRNEKV 127
DIR+EKV
Sbjct: 313 DIRDEKV 319
Score = 211 bits (540), Expect = 2e-61
Identities = 81/142 (57%), Positives = 103/142 (72%), Gaps = 4/142 (2%)
Query: 432 KVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVLKIKNE 491
KVKVLKCI P+++E+ VLGQYT +G + GYL+D+ VP S TPTFA+AVL I N+
Sbjct: 318 KVKVLKCIEPIKMEECVLGQYTASADG---SIPGYLEDEGVPKDSTTPTFAAAVLHINND 374
Query: 492 RWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGK-TKRNELVMRVQPGEAVYVKMMT 550
RW+GVPFIL GKAL ER +IRIQ+ V G T+RNELV+R QP EA+Y+K+
Sbjct: 375 RWEGVPFILEAGKALEERYVEIRIQFKGVDEFRPSGDDTQRNELVIRAQPSEAMYLKITA 434
Query: 551 KTPGMSFDMEETELDLTYGSRY 572
K PG+S D+ +TELDLTY +RY
Sbjct: 435 KVPGLSNDLHQTELDLTYKTRY 456
Score = 99.4 bits (248), Expect = 5e-22
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 364 ALNERKADIRIQYTDVPGDIFEGK-TKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETE 422
AL ER +IRIQ+ V G T+RNELV+R QP EA+Y+K+ K PG+S D+ +TE
Sbjct: 388 ALEERYVEIRIQFKGVDEFRPSGDDTQRNELVIRAQPSEAMYLKITAKVPGLSNDLHQTE 447
Query: 423 LDLTYGSRYKVKV 435
LDLTY +RY V++
Sbjct: 448 LDLTYKTRYNVRL 460
>gnl|CDD|233162 TIGR00871, zwf, glucose-6-phosphate 1-dehydrogenase. This enzyme
(EC 1.1.1.49) acts on glucose 6-phospate and reduces
NADP(+). An alternate name appearing in the literature
for the human enzyme, based on a slower activity with
beta-D-glucose, is glucose 1-dehydrogenase (EC
1.1.1.47), but that name more properly describes a
subfamily of the short chain dehydrogenases/reductases
family. This is a well-studied enzyme family, with
sequences available from well over 50 species. The
trusted cutoff is set above the score for the Drosophila
melanogaster CG7140 gene product, a homolog of unknown
function. G6PD homologs from the bacteria Aquifex
aeolicus and Helicobacter pylori lack several motifs
well conserved most other members, were omitted from the
seed alignment, and score well below the trusted cutoff
[Energy metabolism, Pentose phosphate pathway].
Length = 482
Score = 252 bits (645), Expect = 3e-77
Identities = 78/127 (61%), Positives = 98/127 (77%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
GW+RV++EKPFG D S++ L+ L A+F E+QIYRIDHYLGKE VQNL+ +RF N+IF
Sbjct: 138 GWSRVVVEKPFGHDLASAQELNKQLRAVFKEDQIYRIDHYLGKETVQNLLVLRFANQIFE 197
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
P WNR I V ITF E FG +GRGGY+D+ G +RD++QNHLLQ+L LVAME PA+ D
Sbjct: 198 PLWNRRYIDHVQITFAESFGVEGRGGYYDKSGALRDMVQNHLLQLLCLVAMEPPASFDAD 257
Query: 121 DIRNEKV 127
IR+EKV
Sbjct: 258 SIRDEKV 264
Score = 202 bits (517), Expect = 1e-58
Identities = 68/144 (47%), Positives = 91/144 (63%), Gaps = 3/144 (2%)
Query: 432 KVKVLKCIPPLQLED--VVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVLKIK 489
KVKVLK + P+ +D VV GQY G G + GYL+++ V S T TFA+ L I
Sbjct: 263 KVKVLKALRPIDPDDNNVVRGQYGAGEIG-GVSVPGYLEEEGVDKDSTTETFAALKLYID 321
Query: 490 NERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMM 549
N RW GVPF LR GK L E+ +IRIQ+ DVP +F+ + NELV+R+QP E VY+K
Sbjct: 322 NWRWAGVPFYLRTGKRLPEKVTEIRIQFKDVPLLLFKQNERNNELVIRIQPDEGVYLKFN 381
Query: 550 TKTPGMSFDMEETELDLTYGSRYK 573
K PG++F+ +LD +YGSR+
Sbjct: 382 AKKPGLNFETRPVKLDFSYGSRFG 405
Score = 100 bits (250), Expect = 2e-22
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 364 ALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETEL 423
L E+ +IRIQ+ DVP +F+ + NELV+R+QP E VY+K K PG++F+ +L
Sbjct: 337 RLPEKVTEIRIQFKDVPLLLFKQNERNNELVIRIQPDEGVYLKFNAKKPGLNFETRPVKL 396
Query: 424 DLTYGSRYK 432
D +YGSR+
Sbjct: 397 DFSYGSRFG 405
>gnl|CDD|178154 PLN02539, PLN02539, glucose-6-phosphate 1-dehydrogenase.
Length = 491
Score = 246 bits (629), Expect = 8e-75
Identities = 90/153 (58%), Positives = 118/153 (77%), Gaps = 8/153 (5%)
Query: 2 WTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTP 61
WTR+++EKPFGKD +S+ LS+ +G LF E Q+YRIDHYLGKE+VQNL+ +RF NR F P
Sbjct: 158 WTRIVVEKPFGKDLESAEELSSQIGELFDESQLYRIDHYLGKELVQNLLVLRFANRFFLP 217
Query: 62 TWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDD 121
WNR+NIA+V I F+E FGT+GRGGYFDE+GIIRD++QNHLLQ+L LVAMEKP ++ P+
Sbjct: 218 LWNRDNIANVQIVFREDFGTEGRGGYFDEYGIIRDIIQNHLLQVLCLVAMEKPVSLKPEH 277
Query: 122 IRNEKVH------PCPEDR--IHQHILWRPDPT 146
IR+EKV P ++ + Q+ +R DPT
Sbjct: 278 IRDEKVKVLQSVEPIKDEEVVLGQYEGYRDDPT 310
Score = 201 bits (512), Expect = 7e-58
Identities = 81/145 (55%), Positives = 106/145 (73%), Gaps = 12/145 (8%)
Query: 432 KVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVLKIKNE 491
KVKVL+ + P++ E+VVLGQY G Y DD TVP SNTPTFAS VL+I NE
Sbjct: 282 KVKVLQSVEPIKDEEVVLGQYEG-----------YRDDPTVPDDSNTPTFASVVLRINNE 330
Query: 492 RWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGKTK-RNELVMRVQPGEAVYVKMMT 550
RW+GVPFIL+ GKAL+ RKA+IR+Q+ DVPGDIF+ + + RNE V+R+QP EA+Y+K+
Sbjct: 331 RWEGVPFILKAGKALDSRKAEIRVQFKDVPGDIFKCQKQGRNEFVIRLQPSEAMYMKLTV 390
Query: 551 KTPGMSFDMEETELDLTYGSRYKCV 575
K PG+ ++ELDL+YG RY+ V
Sbjct: 391 KQPGLEMSTVQSELDLSYGQRYQDV 415
Score = 97.9 bits (244), Expect = 1e-21
Identities = 37/70 (52%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Query: 364 ALNERKADIRIQYTDVPGDIFEGKTK-RNELVMRVQPGEAVYVKMMTKTPGMSFDMEETE 422
AL+ RKA+IR+Q+ DVPGDIF+ + + RNE V+R+QP EA+Y+K+ K PG+ ++E
Sbjct: 344 ALDSRKAEIRVQFKDVPGDIFKCQKQGRNEFVIRLQPSEAMYMKLTVKQPGLEMSTVQSE 403
Query: 423 LDLTYGSRYK 432
LDL+YG RY+
Sbjct: 404 LDLSYGQRYQ 413
>gnl|CDD|217228 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal
domain.
Length = 294
Score = 238 bits (610), Expect = 2e-74
Identities = 91/142 (64%), Positives = 108/142 (76%), Gaps = 1/142 (0%)
Query: 432 KVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVLKIKNE 491
KVKVLK + P+ +DVVLGQY +G + GYL+D TVP SNT TFA+ VL I NE
Sbjct: 77 KVKVLKALRPIDEDDVVLGQYGAGEDGGKEKP-GYLEDPTVPADSNTETFAAGVLHIDNE 135
Query: 492 RWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTK 551
RW+GVPF LR GKALNERKA+IRIQ+ DVPGDIF + RNELV+RVQP EA+Y+KM K
Sbjct: 136 RWEGVPFYLRAGKALNERKAEIRIQFKDVPGDIFSEQAPRNELVIRVQPDEAIYLKMNAK 195
Query: 552 TPGMSFDMEETELDLTYGSRYK 573
+PG+SF+ ETELDLTY RYK
Sbjct: 196 SPGLSFNTRETELDLTYSDRYK 217
Score = 163 bits (415), Expect = 4e-46
Identities = 58/78 (74%), Positives = 67/78 (85%)
Query: 50 MTMRFGNRIFTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLV 109
+ +RFGN IF P WNR+NI +V ITFKEPFGT+GRGGYFDEFGIIRD+MQNHLLQIL LV
Sbjct: 1 LVLRFGNEIFNPLWNRDNIDNVQITFKEPFGTEGRGGYFDEFGIIRDMMQNHLLQILCLV 60
Query: 110 AMEKPATIHPDDIRNEKV 127
AMEKP + +DIR+EKV
Sbjct: 61 AMEKPVSFSAEDIRDEKV 78
Score = 120 bits (303), Expect = 2e-30
Identities = 53/92 (57%), Positives = 65/92 (70%), Gaps = 4/92 (4%)
Query: 364 ALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETEL 423
ALNERKA+IRIQ+ DVPGDIF + RNELV+RVQP EA+Y+KM K+PG+SF+ ETEL
Sbjct: 149 ALNERKAEIRIQFKDVPGDIFSEQAPRNELVIRVQPDEAIYLKMNAKSPGLSFNTRETEL 208
Query: 424 DLTYGSRYKVKVLKCIPPLQLEDVVLGQYTGD 455
DLTY RYK + P E ++L GD
Sbjct: 209 DLTYSDRYKDFKI----PEAYERLILDTMCGD 236
>gnl|CDD|235579 PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.
Length = 495
Score = 234 bits (599), Expect = 3e-70
Identities = 78/145 (53%), Positives = 102/145 (70%), Gaps = 6/145 (4%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
GW RV+IEKPFG D S+R L++ +G +F EEQIYRIDHYLGKE VQNL+ +RF N +F
Sbjct: 147 GWRRVVIEKPFGHDLASARELNDQVGEVFKEEQIYRIDHYLGKETVQNLLALRFANALFE 206
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
P WNR I V IT E G +GRGGY+D+ G +RD++QNHLLQ+L+LVAME PA++ D
Sbjct: 207 PLWNRNYIDHVQITVAETVGVEGRGGYYDKSGALRDMVQNHLLQLLALVAMEPPASLDAD 266
Query: 121 DIRNEKV------HPCPEDRIHQHI 139
IR+EKV P + + ++
Sbjct: 267 SIRDEKVKVLRALRPITPEDVKENT 291
Score = 143 bits (363), Expect = 6e-37
Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 10/150 (6%)
Query: 432 KVKVLKCIPPLQLEDV----VLGQYT-GDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVL 486
KVKVL+ + P+ EDV V GQYT G G+ GY +++ V P S T TF + L
Sbjct: 272 KVKVLRALRPITPEDVKENTVRGQYTAGWIGGK--PVPGYREEEGVNPDSTTETFVALKL 329
Query: 487 KIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGKTKR---NELVMRVQPGEA 543
+I N RW GVPF LR GK L ++ +I I + P ++FE + N+LV+R+QP E
Sbjct: 330 EIDNWRWAGVPFYLRTGKRLPKKVTEIVIVFKPPPHNLFEESAEELGPNKLVIRIQPDEG 389
Query: 544 VYVKMMTKTPGMSFDMEETELDLTYGSRYK 573
+ ++ K PG ++ +LD +Y +
Sbjct: 390 ISLRFNAKVPGEGMELRPVKLDFSYSEAFG 419
Score = 58.6 bits (143), Expect = 4e-09
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 365 LNERKADIRIQYTDVPGDIFEGKTKR---NELVMRVQPGEAVYVKMMTKTPGMSFDMEET 421
L ++ +I I + P ++FE + N+LV+R+QP E + ++ K PG ++
Sbjct: 349 LPKKVTEIVIVFKPPPHNLFEESAEELGPNKLVIRIQPDEGISLRFNAKVPGEGMELRPV 408
Query: 422 ELDLTYGSRYKV 433
+LD +Y +
Sbjct: 409 KLDFSYSEAFGE 420
>gnl|CDD|223441 COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate
transport and metabolism].
Length = 483
Score = 228 bits (584), Expect = 2e-68
Identities = 78/143 (54%), Positives = 99/143 (69%), Gaps = 6/143 (4%)
Query: 3 TRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPT 62
R++IEKPFG D S+R L++ + A+F EEQIYRIDHYLGKE VQNL+ +RF N IF P
Sbjct: 139 GRLVIEKPFGHDLASARELNDQISAVFKEEQIYRIDHYLGKETVQNLLALRFANAIFEPL 198
Query: 63 WNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDI 122
WNR I V IT E G +GRGGY+D+ G +RD++QNHLLQ+L LVAME PA+ DDI
Sbjct: 199 WNRNYIDHVQITVAETLGVEGRGGYYDKAGALRDMVQNHLLQLLCLVAMEPPASFSADDI 258
Query: 123 RNEKV------HPCPEDRIHQHI 139
R+EKV P E+ + +
Sbjct: 259 RDEKVKVLKALRPISEENVKEDT 281
Score = 145 bits (367), Expect = 1e-37
Identities = 59/151 (39%), Positives = 84/151 (55%), Gaps = 13/151 (8%)
Query: 432 KVKVLKCIPPLQ----LEDVVLGQYT-GDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVL 486
KVKVLK + P+ ED V GQYT G+ +G+ GYL+++ V SNT TF + L
Sbjct: 262 KVKVLKALRPISEENVKEDTVRGQYTAGEIDGK--KVPGYLEEEGVAKDSNTETFVAIKL 319
Query: 487 KIKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGKTKR----NELVMRVQPGE 542
+I N RW GVPF LR GK L ++ +I I + VP ++F ++ N LV+R+QP E
Sbjct: 320 EIDNWRWAGVPFYLRTGKRLPKKVTEIVIHFKRVPHNLFSDPSRSSLEQNRLVIRIQPDE 379
Query: 543 AVYVKMMTKTPGMSFDMEETELDLTYGSRYK 573
+ +K K PG ++ LDL + K
Sbjct: 380 GISLKFNVKVPG--LGLQTRPLDLDFSYDSK 408
Score = 58.8 bits (143), Expect = 4e-09
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 361 YLSA---LNERKADIRIQYTDVPGDIFEGKTKR----NELVMRVQPGEAVYVKMMTKTPG 413
YL L ++ +I I + VP ++F ++ N LV+R+QP E + +K K PG
Sbjct: 332 YLRTGKRLPKKVTEIVIHFKRVPHNLFSDPSRSSLEQNRLVIRIQPDEGISLKFNVKVPG 391
Query: 414 MSFDMEETELDLTYGSRYK 432
++ LDL + K
Sbjct: 392 --LGLQTRPLDLDFSYDSK 408
>gnl|CDD|237233 PRK12853, PRK12853, glucose-6-phosphate 1-dehydrogenase;
Provisional.
Length = 482
Score = 218 bits (557), Expect = 2e-64
Identities = 68/128 (53%), Positives = 90/128 (70%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
RV++EKPFG D S+R L+ L +F E+QIYRIDH+LGKE VQNL+ +RF N +
Sbjct: 137 EGRRVVLEKPFGHDLASARALNATLAKVFDEDQIYRIDHFLGKETVQNLLALRFANALLE 196
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
P WNR +I V IT E G +GRGG++D G +RD++QNHLLQ+L+LVAME PA+ D
Sbjct: 197 PLWNRNHIDHVQITVAETLGVEGRGGFYDATGALRDMVQNHLLQLLALVAMEPPASFDAD 256
Query: 121 DIRNEKVH 128
+R+EK
Sbjct: 257 AVRDEKAK 264
Score = 135 bits (342), Expect = 3e-34
Identities = 60/142 (42%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 432 KVKVLKCIPPLQLEDV--VLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVLKIK 489
K KVL+ I PL +DV V GQYT G G+ GY ++ V P S T TF + L+I
Sbjct: 262 KAKVLRAIRPLDPDDVHTVRGQYTAGTVG-GEPVPGYREEPGVDPDSRTETFVALKLEID 320
Query: 490 NERWDGVPFILRCGKALNERKADIRIQYTDVPGDIFE--GKTKRNELVMRVQPGEAVYVK 547
N RW GVPF LR GK L ER+ +I I + VP +F G N LV+R+QP E + ++
Sbjct: 321 NWRWAGVPFYLRTGKRLAERRTEIVITFKPVPHALFRGTGVEPPNRLVIRLQPDEGISLE 380
Query: 548 MMTKTPGMSFDMEETELDLTYG 569
+ K PG + ELD Y
Sbjct: 381 LNVKRPGPGMRLRPVELDADYA 402
Score = 53.8 bits (130), Expect = 1e-07
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 364 ALNERKADIRIQYTDVPGDIFE--GKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEET 421
L ER+ +I I + VP +F G N LV+R+QP E + +++ K PG +
Sbjct: 336 RLAERRTEIVITFKPVPHALFRGTGVEPPNRLVIRLQPDEGISLELNVKRPGPGMRLRPV 395
Query: 422 ELDLTYG 428
ELD Y
Sbjct: 396 ELDADYA 402
>gnl|CDD|215191 PLN02333, PLN02333, glucose-6-phosphate 1-dehydrogenase.
Length = 604
Score = 196 bits (499), Expect = 3e-55
Identities = 80/127 (62%), Positives = 99/127 (77%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
GWTRVI+EKPFG+DS+SS L+ L E+QI+RIDHYLGKE+V+NL +RF N IF
Sbjct: 253 GWTRVIVEKPFGRDSESSAALTKSLKQYLEEDQIFRIDHYLGKELVENLSVLRFSNLIFE 312
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
P W+R+ I +V F E FGT+GRGGYFD +GIIRD+MQNHLLQIL+L AME P ++ +
Sbjct: 313 PLWSRQYIRNVQFIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVSLDAE 372
Query: 121 DIRNEKV 127
DIRNEKV
Sbjct: 373 DIRNEKV 379
Score = 160 bits (405), Expect = 3e-42
Identities = 73/147 (49%), Positives = 99/147 (67%), Gaps = 7/147 (4%)
Query: 432 KVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVLKIKNE 491
KVKVL+ + P+QLEDVV+GQY G G Y DDKTVP GS TPTFA+A L I N
Sbjct: 378 KVKVLRSMRPIQLEDVVIGQYKSHTKG-GVTYPAYTDDKTVPKGSLTPTFAAAALFIDNA 436
Query: 492 RWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGKT------KRNELVMRVQPGEAVY 545
RWDGVPF+++ GKAL+ + A+IR+Q+ VPG+++ NELV+RVQP EA+Y
Sbjct: 437 RWDGVPFLMKAGKALHTKSAEIRVQFRHVPGNLYNRNFGTDLDQATNELVIRVQPDEAIY 496
Query: 546 VKMMTKTPGMSFDMEETELDLTYGSRY 572
+K+ K PG+ ++ + L+L Y +RY
Sbjct: 497 LKINNKVPGLGMRLDRSNLNLLYAARY 523
Score = 69.2 bits (169), Expect = 3e-12
Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 364 ALNERKADIRIQYTDVPGDIFEGKT------KRNELVMRVQPGEAVYVKMMTKTPGMSFD 417
AL+ + A+IR+Q+ VPG+++ NELV+RVQP EA+Y+K+ K PG+
Sbjct: 450 ALHTKSAEIRVQFRHVPGNLYNRNFGTDLDQATNELVIRVQPDEAIYLKINNKVPGLGMR 509
Query: 418 MEETELDLTYGSRY 431
++ + L+L Y +RY
Sbjct: 510 LDRSNLNLLYAARY 523
>gnl|CDD|215344 PLN02640, PLN02640, glucose-6-phosphate 1-dehydrogenase.
Length = 573
Score = 189 bits (482), Expect = 4e-53
Identities = 80/127 (62%), Positives = 99/127 (77%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
GWTRVI+EKPFG+DS+SS L+ L EEQI+RIDHYLGKE+V+NL +RF N +F
Sbjct: 224 GWTRVIVEKPFGRDSESSGELTRCLKQYLTEEQIFRIDHYLGKELVENLSVLRFSNLVFE 283
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
P W+R I +V + F E FGT+GRGGYFD +GIIRD+MQNHLLQIL+L AME P ++ +
Sbjct: 284 PLWSRNYIRNVQLIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVSLDAE 343
Query: 121 DIRNEKV 127
DIRNEKV
Sbjct: 344 DIRNEKV 350
Score = 161 bits (408), Expect = 7e-43
Identities = 73/147 (49%), Positives = 102/147 (69%), Gaps = 7/147 (4%)
Query: 432 KVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVLKIKNE 491
KVKVL+ + PLQLEDV++GQY G G G + Y DD TVP S TPTFA+A L I N
Sbjct: 349 KVKVLRSMKPLQLEDVIVGQYKGHSKG-GKSYPAYTDDPTVPKHSLTPTFAAAALFINNA 407
Query: 492 RWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGK------TKRNELVMRVQPGEAVY 545
RWDGVPF+++ GKAL+ R+A+IR+Q+ VPG++++ NELV+RVQP EA+Y
Sbjct: 408 RWDGVPFLMKAGKALHTRRAEIRVQFRHVPGNLYKRNFGTDLDKATNELVLRVQPDEAIY 467
Query: 546 VKMMTKTPGMSFDMEETELDLTYGSRY 572
+K+ K PG+ ++ ++L+L Y +RY
Sbjct: 468 LKINNKVPGLGMRLDRSDLNLLYRARY 494
Score = 68.9 bits (168), Expect = 3e-12
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 28/153 (18%)
Query: 364 ALNERKADIRIQYTDVPGDIFEGK------TKRNELVMRVQPGEAVYVKMMTKTPGMSFD 417
AL+ R+A+IR+Q+ VPG++++ NELV+RVQP EA+Y+K+ K PG+
Sbjct: 421 ALHTRRAEIRVQFRHVPGNLYKRNFGTDLDKATNELVLRVQPDEAIYLKINNKVPGLGMR 480
Query: 418 MEETELDLTYGSRYKVKVLKCIPPLQLEDVVLGQYTGD-----PNGEGDAKYGY------ 466
++ ++L+L Y +RY ++ P E ++L G+ + E DA +
Sbjct: 481 LDRSDLNLLYRARYPREI-----PDAYERLLLDAIEGERRLFIRSDELDAAWALFTPLLK 535
Query: 467 -LDDKTVPP-----GSNTPTFASAVLKIKNERW 493
L++K + P GS P A + N RW
Sbjct: 536 ELEEKKIIPELYPYGSRGPVGAHYLAAKYNVRW 568
>gnl|CDD|237234 PRK12854, PRK12854, glucose-6-phosphate 1-dehydrogenase;
Provisional.
Length = 484
Score = 156 bits (397), Expect = 9e-42
Identities = 57/123 (46%), Positives = 75/123 (60%)
Query: 4 RVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFTPTW 63
RV++EKPFG D S+ L+ + +F E QI+RIDH+LGKE QN++ RF N +F P W
Sbjct: 148 RVVMEKPFGTDLASAEALNAAVHEVFDESQIFRIDHFLGKEAAQNILAFRFANGLFEPIW 207
Query: 64 NRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPDDIR 123
NRE I V I E G R ++D G RD++ HL Q+L+ VAME P + PD I
Sbjct: 208 NREFIDHVQIDVPETLGVDTRAAFYDATGAYRDMVVTHLFQVLAFVAMEPPTALEPDAIS 267
Query: 124 NEK 126
EK
Sbjct: 268 EEK 270
Score = 100 bits (251), Expect = 2e-22
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 15/142 (10%)
Query: 432 KVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVLKIKNE 491
K KV + + PL +VV GQY+G Y D+ V P S T TF + + I N
Sbjct: 270 KNKVFRSMRPLDPAEVVRGQYSG-----------YRDEPGVAPDSTTETFVALKVWIDNW 318
Query: 492 RWDGVPFILRCGKALNERKADIRIQYTDVPGDIFE----GKTKRNELVMRVQPGEAVYVK 547
RW GVPF LR GK + E + I I + + P +F G + L + V +
Sbjct: 319 RWAGVPFYLRTGKRMAEGQRIISIAFREPPYSMFPAGSVGAQGPDHLTFDLADNSKVSLS 378
Query: 548 MMTKTPGMSFDMEETELDLTYG 569
K PG +++ L +
Sbjct: 379 FYGKRPGPGMRLDKLSLQFSLK 400
Score = 32.3 bits (74), Expect = 0.81
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 365 LNERKADIRIQYTDVPGDIFE----GKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEE 420
+ E + I I + + P +F G + L + V + K PG +++
Sbjct: 333 MAEGQRIISIAFREPPYSMFPAGSVGAQGPDHLTFDLADNSKVSLSFYGKRPGPGMRLDK 392
Query: 421 TELDLTYG 428
L +
Sbjct: 393 LSLQFSLK 400
>gnl|CDD|215937 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, NAD binding
domain.
Length = 183
Score = 115 bits (291), Expect = 7e-30
Identities = 33/48 (68%), Positives = 41/48 (85%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQN 48
GWTRV+IEKPFG D +S+R L++ L ++F E+QIYRIDHYLGKE VQN
Sbjct: 136 GWTRVVIEKPFGHDLESARELNDQLASVFDEDQIYRIDHYLGKETVQN 183
>gnl|CDD|147520 pfam05380, Peptidase_A17, Pao retrotransposon peptidase.
Corresponds to Merops family A17. These proteins are
homologous to aspartic proteinases encoded by
retroposons and retroviruses.
Length = 159
Score = 103 bits (258), Expect = 8e-26
Identities = 44/98 (44%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 264 TKRQVLSLIASIDDVNGFLSPVTVYMKMFMQQVWLIKDVSWDSPLPGTLQRKWNRLISEI 323
TKR+VLS +ASI D G L+PVTV K+F+Q++W K + WD +P L ++W ++
Sbjct: 2 TKREVLSQVASIFDPLGLLAPVTVRAKIFLQEIWRQK-LGWDEEIPEELSQRWLAFRKQL 60
Query: 324 HQLSEIKIPRFVLCSDYLSLDLIGFGDASGAAYAAVVY 361
L +I++PR+V S ++ L GF DAS AYAA VY
Sbjct: 61 STLQQIRVPRYVPYSPARNIQLHGFCDASEKAYAAAVY 98
>gnl|CDD|238822 cd01644, RT_pepA17, RT_pepA17: Reverse transcriptase (RTs) in
retrotransposons. This subfamily represents the RT
domain of a multifunctional enzyme. C-terminal to the RT
domain is a domain homologous to aspartic proteinases
(corresponding to Merops family A17) encoded by
retrotransposons and retroviruses. RT catalyzes DNA
replication from an RNA template and is responsible for
the replication of retroelements.
Length = 213
Score = 99.7 bits (249), Expect = 6e-24
Identities = 50/144 (34%), Positives = 66/144 (45%), Gaps = 25/144 (17%)
Query: 126 KVHPCPEDRIHQHILWRPDP-TQEVKEFELKTVTFGLPPSPYQAQRSI------------ 172
KV P EDR LWR D + E+ + V FG +P+ A R++
Sbjct: 74 KVRP--EDRDVLRFLWRKDGDEPKPIEYRMTVVPFGAASAPFLANRALKQHAEDHPHEAA 131
Query: 173 --------YVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDC 224
YVDDI+ +++ A + L +LL GF LRKWAS+ EVL DLP E
Sbjct: 132 AKIIKRNFYVDDILVSTDTLNEAVNVAKRLIALLKKGGFNLRKWASNSQEVLDDLPEERV 191
Query: 225 EKPHMLGSNESIKVLGIRWCPKSD 248
E K LG+RW PK+D
Sbjct: 192 LLDRDSDVTE--KTLGLRWNPKTD 213
>gnl|CDD|215698 pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA
polymerase). A reverse transcriptase gene is usually
indicative of a mobile element such as a retrotransposon
or retrovirus. Reverse transcriptases occur in a variety
of mobile elements, including retrotransposons,
retroviruses, group II introns, bacterial msDNAs,
hepadnaviruses, and caulimoviruses.
Length = 194
Score = 30.4 bits (69), Expect = 2.1
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 18/65 (27%)
Query: 159 FGLPPSPYQAQRSI------------------YVDDIVSGAVSISAAKTLCNELSSLLGA 200
G SP + Y DDI+ + S + + E+ L
Sbjct: 110 QGSVLSPLLFNLFMNELLRPLRKRFPGLTYLRYADDILIFSKSPEELQEILEEVLEFLKE 169
Query: 201 EGFVL 205
G L
Sbjct: 170 LGLKL 174
>gnl|CDD|238771 cd01513, Translation_factor_III, Domain III of Elongation factor
(EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu
and EF-G participate in the elongation phase during
protein biosynthesis on the ribosome. Their functional
cycles depend on GTP binding and its hydrolysis. The
EF-Tu complexed with GTP and aminoacyl-tRNA delivers
tRNA to the ribosome, whereas EF-G stimulates
translocation, a process in which tRNA and mRNA
movements occur in the ribosome. Experimental data
showed that: (1) intrinsic GTPase activity of EF-G is
influenced by excision of its domain III; (2) that EF-G
lacking domain III has a 1,000-fold decreased GTPase
activity on the ribosome and, a slightly decreased
affinity for GTP; and (3) EF-G lacking domain III does
not stimulate translocation, despite the physical
presence of domain IV which is also very important for
translocation. These findings indicate an essential
contribution of domain III to activation of GTP
hydrolysis. Domains III and V of EF-G have the same fold
(although they are not completely superimposable), the
double split beta-alpha-beta fold. This fold is observed
in a large number of ribonucleotide binding proteins and
is also referred to as the ribonucleoprotein (RNP) or
RNA recognition (RRM) motif. This domain III is found
in several elongation factors, as well as in peptide
chain release factors and in GT-1 family of GTPase
(GTPBP1).
Length = 102
Score = 28.1 bits (63), Expect = 4.8
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 369 KADIRIQYTDVPGDIFE------GKTKRNELVMRVQPGEAVYVKMMTKTP 412
K + + VPG I + GKT+ + ++ GE V++ + P
Sbjct: 24 KPVLNVGTAHVPGRIAKLLSKVDGKTEEKKPPEFLKSGERGIVEVELQKP 73
Score = 28.1 bits (63), Expect = 4.8
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 510 KADIRIQYTDVPGDIFE------GKTKRNELVMRVQPGEAVYVKMMTKTP 553
K + + VPG I + GKT+ + ++ GE V++ + P
Sbjct: 24 KPVLNVGTAHVPGRIAKLLSKVDGKTEEKKPPEFLKSGERGIVEVELQKP 73
>gnl|CDD|222768 PHA00002, A, DNA replication initiation protein gpA.
Length = 515
Score = 29.5 bits (66), Expect = 5.4
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 416 FDMEETELDLTYGSRYKVKVLKCIPPLQLEDVVLGQY----TGDPNGEGDAKYGYLDDKT 471
EE LD G Y+ L I + VLGQ T D GDA++ L +KT
Sbjct: 74 RAPEELHLDDEIGEDYRSTTLSLIDEMAECYKVLGQLDINNTIDHRPPGDAEWVLLYEKT 133
Query: 472 V 472
V
Sbjct: 134 V 134
>gnl|CDD|223200 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA
glycosylase [DNA replication, recombination, and
repair].
Length = 285
Score = 28.6 bits (64), Expect = 8.4
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 177 IVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLSDLPVEDCEK 226
I+S VS++AA + L SL G + + + PE L+ E +
Sbjct: 113 ILSQQVSVAAAAKIWARLVSLYGNALEIYHSFPT--PEQLAAADEEALRR 160
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.413
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,021,201
Number of extensions: 2970187
Number of successful extensions: 2199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2168
Number of HSP's successfully gapped: 43
Length of query: 576
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 474
Effective length of database: 6,413,494
Effective search space: 3039996156
Effective search space used: 3039996156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)