RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17439
(576 letters)
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase,
oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism,
glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB:
2bhl_A* 1qki_A*
Length = 489
Score = 281 bits (722), Expect = 1e-88
Identities = 96/127 (75%), Positives = 112/127 (88%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
GW R+I+EKPFG+D SS LSNH+ +LF E+QIYRIDHYLGKEMVQNLM +RF NRIF
Sbjct: 137 GWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFG 196
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
P WNR+NIA V++TFKEPFGT+GRGGYFDEFGIIRDVMQNHLLQ+L LVAMEKPA+ + D
Sbjct: 197 PIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNSD 256
Query: 121 DIRNEKV 127
D+R+EKV
Sbjct: 257 DVRDEKV 263
Score = 247 bits (634), Expect = 9e-76
Identities = 102/142 (71%), Positives = 119/142 (83%)
Query: 432 KVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVLKIKNE 491
KVKVLKCI +Q +VVLGQY G+P+GEG+A GYLDD TVP GS T TFA+ VL ++NE
Sbjct: 262 KVKVLKCISEVQANNVVLGQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENE 321
Query: 492 RWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTK 551
RWDGVPFILRCGKALNERKA++R+Q+ DV GDIF + KRNELV+RVQP EAVY KMMTK
Sbjct: 322 RWDGVPFILRCGKALNERKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTK 381
Query: 552 TPGMSFDMEETELDLTYGSRYK 573
PGM F+ EE+ELDLTYG+RYK
Sbjct: 382 KPGMFFNPEESELDLTYGNRYK 403
Score = 112 bits (283), Expect = 1e-26
Identities = 50/69 (72%), Positives = 59/69 (85%)
Query: 364 ALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETEL 423
ALNERKA++R+Q+ DV GDIF + KRNELV+RVQP EAVY KMMTK PGM F+ EE+EL
Sbjct: 335 ALNERKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESEL 394
Query: 424 DLTYGSRYK 432
DLTYG+RYK
Sbjct: 395 DLTYGNRYK 403
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway,
alpha beta, NAD(P) rossmann-like domain, oxidoreductase;
2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Length = 541
Score = 281 bits (721), Expect = 6e-88
Identities = 81/127 (63%), Positives = 100/127 (78%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
GW R+I+EKPFG+D+++S LSN L LF E Q++RIDHYLGKEMVQN++ RF NR+F+
Sbjct: 195 GWVRLIVEKPFGRDTETSEQLSNQLKPLFNERQVFRIDHYLGKEMVQNIIVTRFANRVFS 254
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
WN +IA V ITFKE GT GRGGYFD GIIRDV+QNHL QILSL+ MEKP ++ +
Sbjct: 255 ALWNSNSIACVQITFKEKIGTAGRGGYFDSIGIIRDVIQNHLTQILSLLTMEKPRSLSAE 314
Query: 121 DIRNEKV 127
DIR+EKV
Sbjct: 315 DIRDEKV 321
Score = 234 bits (600), Expect = 3e-70
Identities = 74/142 (52%), Positives = 92/142 (64%), Gaps = 4/142 (2%)
Query: 432 KVKVLKCIPPLQLEDVVLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVLKIKNE 491
KV+VL+ + P + VLGQYT + GYLDD +VP GS+ PTFA L + N+
Sbjct: 320 KVQVLRQVVPANPAECVLGQYTA---SADGSTPGYLDDPSVPKGSHCPTFAVLRLHVNND 376
Query: 492 RWDGVPFILRCGKALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTK 551
RW GVPFI+R GKAL ER DIRIQ+ D E T+RNELV+R QP EA+Y+K+ K
Sbjct: 377 RWHGVPFIIRAGKALEERLLDIRIQFKDEIRPFGES-TQRNELVIRAQPSEAMYLKLTAK 435
Query: 552 TPGMSFDMEETELDLTYGSRYK 573
TPG+ D +TELDLTY RY
Sbjct: 436 TPGLLNDTHQTELDLTYERRYD 457
Score = 108 bits (272), Expect = 4e-25
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 364 ALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETEL 423
AL ER DIRIQ+ D E T+RNELV+R QP EA+Y+K+ KTPG+ D +TEL
Sbjct: 390 ALEERLLDIRIQFKDEIRPFGES-TQRNELVIRAQPSEAMYLKLTAKTPGLLNDTHQTEL 448
Query: 424 DLTYGSRYKVKV 435
DLTY RY V +
Sbjct: 449 DLTYERRYDVTL 460
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD,
glucose metabolism, oxidoreductase (CHOH(D) - NAD(P));
2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5
PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A*
1h9b_A 2dpg_A*
Length = 485
Score = 255 bits (654), Expect = 1e-78
Identities = 61/145 (42%), Positives = 88/145 (60%), Gaps = 6/145 (4%)
Query: 1 GWTRVIIEKPFGKDSDSSRHLSNHLGALFPEEQIYRIDHYLGKEMVQNLMTMRFGNRIFT 60
G+ R++IEKPFG D++ L N L F + Q++RIDHYLGKEMVQN+ +RFGN IF
Sbjct: 140 GYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNIAALRFGNPIFD 199
Query: 61 PTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIHPD 120
WN++ I +V +T E G + R GY+D G + D++QNH +QI+ +AMEKP +
Sbjct: 200 AAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQIVGWLAMEKPESFTDK 259
Query: 121 DIRNEKV------HPCPEDRIHQHI 139
DIR K E ++++
Sbjct: 260 DIRAAKNAAFNALKIYDEAEVNKYF 284
Score = 182 bits (464), Expect = 3e-51
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 8/147 (5%)
Query: 432 KVKVLKCIPPLQLEDV----VLGQYTGDPNGEGDAKYGYLDDKTVPPGSNTPTFASAVLK 487
K + +V V QY G+ YL++ VP S TF + L+
Sbjct: 265 KNAAFNALKIYDEAEVNKYFVRAQYGA---GDSADFKPYLEELDVPADSKNNTFIAGELQ 321
Query: 488 IKNERWDGVPFILRCGKALNERKADIRIQYTDVPGDIF-EGKTKRNELVMRVQPGEAVYV 546
RW+GVPF +R GK L ++ + I + + E + + L + + P A+ +
Sbjct: 322 FDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFNFGSEQEAQEAVLSIIIDPKGAIEL 381
Query: 547 KMMTKTPGMSFDMEETELDLTYGSRYK 573
K+ K+ +F+ +L T K
Sbjct: 382 KLNAKSVEDAFNTRTIDLGWTVSDEDK 408
Score = 79.9 bits (198), Expect = 4e-16
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 364 ALNERKADIRIQYTDVPGDIF-EGKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETE 422
L ++ + I + + E + + L + + P A+ +K+ K+ +F+ +
Sbjct: 339 RLAAKQTRVDIVFKAGTFNFGSEQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTID 398
Query: 423 LDLTYGSRYKVKV 435
L T K
Sbjct: 399 LGWTVSDEDKKNT 411
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.5 bits (159), Expect = 4e-11
Identities = 83/477 (17%), Positives = 140/477 (29%), Gaps = 182/477 (38%)
Query: 79 FGTQG-RGGYFDEF--------GIIRDVMQNHLLQILSLVAMEKPATIHPDDIRNEKVHP 129
FG QG YF+E ++ D+++ + L+ + EKV
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR---------TTLDAEKVFT 210
Query: 130 CPEDRIHQHILW------RPD-----------P----TQEVKEFELKTVTFGLPPSPYQA 168
+ I + W PD P Q + + G P ++
Sbjct: 211 QGLN-ILE---WLENPSNTPDKDYLLSIPISCPLIGVIQLA-HYVVTAKLLGFTPGELRS 265
Query: 169 QR---SIYVDDIVSGAVSISAAKT----LCN-----ELSSLLGAEGFVLRKWASSHPEVL 216
+ + +V+ AV+I+ + + + +G + S P +L
Sbjct: 266 YLKGATGHSQGLVT-AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 217 SDLPVEDCEKP-HMLGSNESIKVLGIRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIASI 275
D + P ML + + T+ QV +
Sbjct: 325 EDSLENNEGVPSPMLS------ISNL----------------------TQEQVQDY---V 353
Query: 276 DDVNGFLSP---VTVYM----KMFMQQVWLIKDVSWDSPLPGTLQ------RKWNRLISE 322
+ N L V + + K V VS P P +L RK + S
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNL---V-----VS--GP-PQSLYGLNLTLRK-AKAPSG 401
Query: 323 IHQ----LSEIKIPRFVLC---------SDYL--SLDLIGFGDASGAAYAAVVYLSALNE 367
+ Q SE K +F S L + DLI D + ++
Sbjct: 402 LDQSRIPFSERK-LKFSNRFLPVASPFHSHLLVPASDLI-NKDLVK---------NNVSF 450
Query: 368 RKADIRIQ-YTDVPGDIFEGKTKRNELVMRVQPGEAVY--VKMMTKTPGMSFDMEE-TEL 423
DI+I Y D F+G +RV G V + + P E T+
Sbjct: 451 NAKDIQIPVY-----DTFDGSD------LRVLSGSISERIVDCIIRLP---VKWETTTQF 496
Query: 424 DLTYGSRYKVKVLKCIP-------PL--QLED-----VVLGQYTGDPNGEGDAKYGY 466
T+ +L P L + +D V++ G + D YG+
Sbjct: 497 KATH-------ILDFGPGGASGLGVLTHRNKDGTGVRVIVA---GTLDINPDDDYGF 543
Score = 37.3 bits (86), Expect = 0.016
Identities = 25/136 (18%), Positives = 36/136 (26%), Gaps = 44/136 (32%)
Query: 12 GKD----SDSSR--------HLSNHLGALF---------PEEQIYRIDHYLGKEMVQNLM 50
G D S +++ H + G F P GK + +N
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYG--FSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 51 TMRF-----GNRIFTPTWNRENIASVMITFKEPFG----TQGRGGYF-------DEFGII 94
M F G + N S TF+ G TQ F E
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-----FTQPALTLMEKAAF 1744
Query: 95 RDVMQNHLLQILSLVA 110
D+ L+ + A
Sbjct: 1745 EDLKSKGLIPADATFA 1760
Score = 37.3 bits (86), Expect = 0.017
Identities = 83/484 (17%), Positives = 153/484 (31%), Gaps = 199/484 (41%)
Query: 4 RVIIEKPFGKDSDSS--RHLSN---HLGALFP---------EE--QIYRIDHYLGKEMVQ 47
R++ ++PF K S+S+ R + L A+F EE +Y+ H L ++++
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 48 NLMTMRFGNRIFTPT--------------W--------NRENIASVMITFKEPF-G-TQ- 82
I T W +++ + S+ I+ P G Q
Sbjct: 190 F-SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC--PLIGVIQL 246
Query: 83 -------GRGGYFDEFGIIRDVMQ---NHLLQILS--LVAMEK----------------- 113
G+ G +R ++ H +++ +A
Sbjct: 247 AHYVVTAKLLGF--TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 114 ---------------PATIHPDDIRNEKVHPCPEDRIHQHILWRPDPTQEVKEFELKTVT 158
P +I D + N + P P +L + TQE + +
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-------MLSISNLTQEQVQDYVNKTN 357
Query: 159 FGLPPSPYQAQRSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGFVLRKWASSHPEVLS- 217
LP V IS L N GA+ V+ S P+ L
Sbjct: 358 SHLPA---------------GKQVEIS----LVN------GAKNLVV----SGPPQSLYG 388
Query: 218 -DLPVEDCEKPHMLGSNESIKVLGIRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIASID 276
+L + + P G ++S ++ P S +R++
Sbjct: 389 LNLTLRKAKAPS--GLDQS-RI------PFS-----------------ERKL-------K 415
Query: 277 DVNGFLSPVTV-----YMK----MFMQQVWLIKDVSWDSP---LP------GTLQRKWNR 318
N FL PV + + + + +VS+++ +P G+ R +
Sbjct: 416 FSNRFL-PVASPFHSHLLVPASDLINKDLVK-NNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 319 LISE--IHQLSEIKIPRFVLCSDYLS---LDLIGFGDASGAAYAAVVYLSALNERKAD-- 371
ISE + + + + ++ + + + LD G G ASG L L R D
Sbjct: 474 SISERIVDCIIRLPV-KWETTTQFKATHILDF-GPGGASG--------LGVLTHRNKDGT 523
Query: 372 -IRI 374
+R+
Sbjct: 524 GVRV 527
Score = 34.3 bits (78), Expect = 0.14
Identities = 32/191 (16%), Positives = 56/191 (29%), Gaps = 76/191 (39%)
Query: 346 IGFGDASGAA----YAAVVYLSALNERKADIRIQYTDVPGDIFEGKTKRNELVMRVQPGE 401
I FG G Y+A+++ E D +++ + +I E
Sbjct: 1674 IHFGGEKGKRIRENYSAMIF-----ETIVDGKLKTEKIFKEINE---------------- 1712
Query: 402 AVYVKMMTKTPGMSFDMEETELDLTY--------GSRYKVKVLK---CIPP--------- 441
+ +F E+ L T + + LK IP
Sbjct: 1713 --------HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL 1764
Query: 442 ------------LQLEDVV-L----GQYTGD--PNGE-GDAKYGYLDDKTVPPGSNTPTF 481
+ +E +V + G P E G + YG + + PG +F
Sbjct: 1765 GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI---AINPGRVAASF 1821
Query: 482 ASAVLKIKNER 492
+ L+ ER
Sbjct: 1822 SQEALQYVVER 1832
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 7e-06
Identities = 72/519 (13%), Positives = 140/519 (26%), Gaps = 177/519 (34%)
Query: 28 LFPEEQIYRIDHYL-----------------------GK-----EMVQNL-MTMRFGNRI 58
+F + + R+ YL GK ++ + + + +I
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 59 FTPTWNRENIASVMITFKEPFGTQGRGGYFDEFGIIRDVMQNHLLQILSLVAMEKPATIH 118
F W + + + +++Q L QI + T
Sbjct: 185 F---W---------LNL----------KNCNSPETVLEMLQKLLYQI------DPNWTSR 216
Query: 119 PDDIRNEKVHP-CPEDRIHQHILWRPDP-----------TQEVKEFEL--KT-VTFGLPP 163
D N K+ + + + + +P + F L K +T
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT----- 271
Query: 164 SPYQAQRSIYVDDIVSGAVSISAAKTLCNELSSLLGAEGF-VLRKWASSHPEVLSDLPVE 222
R V D +S A + +L + +L E +L K+ P+ DLP E
Sbjct: 272 -----TRFKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQ---DLPRE 321
Query: 223 DC---------------EKPHM----------------------LGSNE----------- 234
+ L E
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 235 ------SIKVLGIRWCPKSDSFFNSVSVELDSPTTTKRQVLSLIASIDDVNGFLSPVTVY 288
+L + W S V +L + ++Q SI +Y
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS---------IY 432
Query: 289 M-------------KMFMQQVWLIKDVSWDSPLPGTLQRKWNRLISEIHQLSEIKIP-RF 334
+ + + + K D +P L + + I H L I+ P R
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG--HHLKNIEHPERM 490
Query: 335 VLCSD-YLSLD-----LIGFGDASGAAYAAVVYLSALNERKADIRIQ---YTDVPGDIFE 385
L +L + A A+ + + L L K I Y + I +
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 386 GKTKRNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELD 424
K E ++ + + + + +M + + F+ ++
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAI-FEEAHKQVQ 588
Score = 41.4 bits (96), Expect = 8e-04
Identities = 37/238 (15%), Positives = 82/238 (34%), Gaps = 50/238 (21%)
Query: 246 KSDSFFNSVSVELDSPTTTKRQVLSLIASIDDVNGFL--------SPVTVYMKMFMQQV- 296
+ V ++ +K ++ +I S D V+G L + + F+++V
Sbjct: 30 VDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV-QKFVEEVL 87
Query: 297 -----WLIKDVSWDSPLPGTLQRKW----NRLISEIHQLSEIKIPRF--------VLCS- 338
+L+ + + P + R + +RL ++ ++ + R L
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 339 ---DYLSLD-LIGFGDASGAAYAAVVYLSALNERKADIRIQYTDV-----PGDIFEGKTK 389
+ +D ++G G A V LS + K D +I + ++ P + E
Sbjct: 148 RPAKNVLIDGVLGSGKTW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE---M 201
Query: 390 RNELVMRVQPGEAVYVKMMTKTPGMSFDMEETELDLTYGSRYKVKVLKCIPPLQLEDV 447
+L+ ++ P + ++ L Y+ C+ L L +V
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE----NCL--LVLLNV 253
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.15
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 21/44 (47%)
Query: 147 QEVKEFE--LKTVTFGLPPSPYQAQRSIYVDDIVSG-AVSISAA 187
Q +K+ + LK +Y DD S A++I A
Sbjct: 20 QALKKLQASLK----------------LYADD--SAPALAIKAT 45
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex,
separation-OF-function helix-hairpin-helix, DNA repair;
HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A*
1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A*
1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A
1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Length = 360
Score = 32.4 bits (73), Expect = 0.44
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 177 IVSGAVSISAAKTLCNELSSLLG-----AEGFVLRKWASSHPEVLSDLPVEDCEKPHMLG 231
I S +I+ + L G + + S + L+ VE + LG
Sbjct: 160 ICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPS--LQALAGPEVEAHLRKLGLG 217
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.413
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,145,871
Number of extensions: 572074
Number of successful extensions: 1091
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1068
Number of HSP's successfully gapped: 19
Length of query: 576
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 477
Effective length of database: 3,937,614
Effective search space: 1878241878
Effective search space used: 1878241878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)