BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17441
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 115/267 (43%), Positives = 175/267 (65%), Gaps = 11/267 (4%)
Query: 16 VTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGD--LSPAAVSYTSGFYHIP 73
+ +AT + PN I ALSVC+ LIS +VYA++VSHP T + +P VSYT+GFY IP
Sbjct: 38 IQLNATSVTHKPNAIQMALSVCEDLISSQVYAILVSHPPTPNDHFTPTPVSYTAGFYRIP 97
Query: 74 VIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALL 133
V+G+++R S +SDK+IH+SFLRTVPPYSHQ+ VW E+++ +N+ +I + S D +GRA
Sbjct: 98 VLGLTTRMSIYSDKSIHLSFLRTVPPYSHQSSVWFEMMRVYNWNHIILLVSDDHEGRAAQ 157
Query: 134 GRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEII 193
R +T + +E + E V++F+PG L E + +ARV ++ AS+ DA +
Sbjct: 158 KRLETLLEERES------KAEKVLQFDPGTKNVTALLMEARELEARVIILSASEDDAATV 211
Query: 194 FKDAQYLNMTETGYVWIVTEQALTA---KNVPVGIIGLKLVNATNEDAHIRDSIYVLTSA 250
++ A LNMT +GYVW+V E+ ++ + P GIIGL+L+N NE AHI D++ V+ A
Sbjct: 212 YRAAAMLNMTGSGYVWLVGEREISGNALRYAPDGIIGLQLINGKNESAHISDAVGVVAQA 271
Query: 251 LKEMNQSAVITEAPQDCDNSGSIWETG 277
+ E+ + IT+ P+ C + +IW+TG
Sbjct: 272 VHELLEKENITDPPRGCVGNTNIWKTG 298
>pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 383
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 178/288 (61%), Gaps = 20/288 (6%)
Query: 10 QYVNKGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPL--TGDLSPAAVSYTS 67
++ + + AT + PN I ALSVC+ LIS +VYA++VSHP T L+P +SYT+
Sbjct: 30 RHFTRKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPPAPTDHLTPTPISYTA 89
Query: 68 GFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDT 127
GFY IPVIG+++R S +SDK+IH+SFLRTVPPYSHQA VW E+++ FN+ VI I S D
Sbjct: 90 GFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDH 149
Query: 128 DGRALLGRFQTTSQNQED---------------DVEIKVQVEAVIEFEPGLTTFKDQLYE 172
+GRA + +T + +E D + + + V++FEPG L E
Sbjct: 150 EGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLE 209
Query: 173 MKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTA---KNVPVGIIGLK 229
K +ARV ++ AS+ DA ++K A L+MT GYVW+V E+ ++ + P GIIGL+
Sbjct: 210 AKELEARVIILSASEDDATAVYKSAAMLDMTGAGYVWLVGEREISGSALRYAPDGIIGLQ 269
Query: 230 LVNATNEDAHIRDSIYVLTSALKEMNQSAVITEAPQDCDNSGSIWETG 277
L+N NE AHI D++ V+ A+ E+ + IT+ P+ C + +IW+TG
Sbjct: 270 LINGKNESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTG 317
>pdb|3QEK|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
pdb|3QEK|B Chain B, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
Length = 384
Score = 232 bits (591), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 120/288 (41%), Positives = 175/288 (60%), Gaps = 20/288 (6%)
Query: 10 QYVNKGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPL--TGDLSPAAVSYTS 67
++ + + AT + PN I ALSVC+ LIS +VYA++VSHP T L+P +SYT+
Sbjct: 31 RHFTRKIQLQATSVTHRPNAIQXALSVCEDLISSQVYAILVSHPPAPTDHLTPTPISYTA 90
Query: 68 GFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDT 127
GFY IPVIG+++R S +SDK+IH+SFLRTVPPYSHQA VW E + FN+ VI I S D
Sbjct: 91 GFYRIPVIGLTTRXSIYSDKSIHLSFLRTVPPYSHQALVWFEXXRLFNWNHVILIVSDDH 150
Query: 128 DGRALLGRFQTTSQNQED---------------DVEIKVQVEAVIEFEPGLTTFKDQLYE 172
+GRA + +T + +E D + + + V++FEPG L E
Sbjct: 151 EGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLE 210
Query: 173 MKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTA---KNVPVGIIGLK 229
K +ARV ++ AS+ DA ++K A L+ T GYVW+V E+ ++ + P GIIGL+
Sbjct: 211 AKELEARVIILSASEDDATAVYKSAAXLDXTGAGYVWLVGEREISGSALRYAPDGIIGLQ 270
Query: 230 LVNATNEDAHIRDSIYVLTSALKEMNQSAVITEAPQDCDNSGSIWETG 277
L+N NE AHI D++ V+ A+ E+ + IT+ P+ C + +IW+TG
Sbjct: 271 LINGKNESAHISDAVAVVAQAIHELFEXENITDPPRGCVGNTNIWKTG 318
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 14/106 (13%)
Query: 366 VLGMVWAGFAMIIVASYTANL--AAFLVLERP------------KTKLTGINDARLRNTM 411
++G + +G A +IVA T N A ++ +P T++TGIND RLRN
Sbjct: 109 MMGELLSGQADMIVAPLTINTERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPS 168
Query: 412 ENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457
+ ATVK S+VD+YFRRQVELS MYR ME +NY++A +AI V+
Sbjct: 169 DKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVR 214
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 14/106 (13%)
Query: 366 VLGMVWAGFAMIIVASYTAN--------------LAAFLVLERPKTKLTGINDARLRNTM 411
++G + +G A +IVA T N +L + T++TGIND RLRN
Sbjct: 109 MMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPS 168
Query: 412 ENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457
+ ATVK S+VD+YFRRQVELS MYR ME +NY++A +AI V+
Sbjct: 169 DKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVR 214
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 17/163 (10%)
Query: 278 KPSRSSTLV-SFLQPFSNTLWIXXXXXXXXXXXXXXXXDRFSPF---------GRFRLSN 327
KP +S V SFL P + +W+ RFSP+ GR +
Sbjct: 497 KPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGR-ETQS 555
Query: 328 SDNTEEDALNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLA 387
S++T E + +++WF+ G + G + +PRS S R++G VW F +II++SYTANLA
Sbjct: 556 SESTNE--FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLA 612
Query: 388 AFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRR 430
AFL +ER ++ I A + + T+ + +FRR
Sbjct: 613 AFLTVER---MVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRR 652
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 113/255 (44%), Gaps = 13/255 (5%)
Query: 24 QMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSA 83
+ DP I+T +C + ++ V+ + + + + S P++GI S
Sbjct: 45 ETDPKSIIT--RICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSM 102
Query: 84 -FSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQN 142
+DK+ F + P QA V + +++ +++ + + + + + ++T +N
Sbjct: 103 IMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIEN 162
Query: 143 QEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNM 202
E++ + + + G + ++QL K Q+ + L+Y +K++A IF+ A + +
Sbjct: 163 SFVGWELEEVLLLDMSLDDGDSKIQNQL---KKLQSPIILLYCTKEEATYIFEVANSVGL 219
Query: 203 TETGYVWIVT-----EQALTAKNVPVGIIGLKLVN-ATNEDAHIRDSIYVLTSALKEM-N 255
T GY WIV + P G+I + A +RD I ++T+A +M +
Sbjct: 220 TGYGYTWIVPSLVAGDTDTVPSEFPTGLISVSYDEWDYGLPARVRDGIAIITTAASDMLS 279
Query: 256 QSAVITEAPQDCDNS 270
+ + I E C N+
Sbjct: 280 EHSFIPEPKSSCYNT 294
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 113/255 (44%), Gaps = 13/255 (5%)
Query: 24 QMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSA 83
+ DP I+T +C + ++ V+ + + + + S P++GI S
Sbjct: 44 ETDPKSIIT--RICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSM 101
Query: 84 -FSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQN 142
+DK+ F + P QA V + +++ +++ + + + + + ++T +N
Sbjct: 102 IMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIEN 161
Query: 143 QEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNM 202
E++ + + + G + ++QL K Q+ + L+Y +K++A IF+ A + +
Sbjct: 162 SFVGWELEEVLLLDMSLDDGDSKIQNQL---KKLQSPIILLYCTKEEATYIFEVANSVGL 218
Query: 203 TETGYVWIVT-----EQALTAKNVPVGIIGLKLVN-ATNEDAHIRDSIYVLTSALKEM-N 255
T GY WIV + P G+I + A +RD I ++T+A +M +
Sbjct: 219 TGYGYTWIVPSLVAGDTDTVPSEFPTGLISVSYDEWDYGLPARVRDGIAIITTAASDMLS 278
Query: 256 QSAVITEAPQDCDNS 270
+ + I E C N+
Sbjct: 279 EHSFIPEPKSSCYNT 293
>pdb|2NR1|A Chain A, Transmembrane Segment 2 Of Nmda Receptor Nr1, Nmr, 10
Structures
Length = 27
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/23 (86%), Positives = 22/23 (95%)
Query: 334 DALNLSSAIWFAWGVLLNSGIGE 356
DAL LSSA+WF+WGVLLNSGIGE
Sbjct: 5 DALTLSSAMWFSWGVLLNSGIGE 27
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 31 LTALSVCKFLISERVYAVIVSHPL------TGDLSPAAVSYTS--GFYHIPVIGISSRDS 82
LT + +++ + YA+ + PL G S ++ + + IP I +S +
Sbjct: 93 LTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSA 152
Query: 83 AFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQ 141
SDK+ + F RTVPP +QA E+L+ FN+ V + S G + F+ ++
Sbjct: 153 KLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEAR 211
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 31 LTALSVCKFLISERVYAVIVSHPL------TGDLSPAAVSYTS--GFYHIPVIGISSRDS 82
LT + +++ + YA+ + PL G S ++ + + IP I +S +
Sbjct: 92 LTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSA 151
Query: 83 AFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQ 141
SDK+ + F RTVPP +QA E+L+ FN+ V + S G + F+ ++
Sbjct: 152 KLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEAR 210
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 53 PLTGDLSPAAVSYT------SGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADV 106
P+ G + P + S ++IP I S+ SDK + F+R VP + QA
Sbjct: 129 PIVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSMDLSDKTLFKYFMRVVPSDAQQARA 188
Query: 107 WVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQ 143
V+++K +N+ V +H+ G + + F+ S +
Sbjct: 189 MVDIVKRYNWTYVSAVHTEGNYGESGMEAFKDMSAKE 225
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 53 PLTGDLSPAAVSYT------SGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADV 106
P+ G + P + S + IP I S+ SDK ++ FLR VP + QA
Sbjct: 123 PIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARA 182
Query: 107 WVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQ 143
++++K +N+ V +H+ G + + F+ + +
Sbjct: 183 MLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQE 219
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 53 PLTGDLSPAAVSYT------SGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADV 106
P+ G + P + S + IP I S+ SDK ++ FLR VP + QA
Sbjct: 128 PIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARA 187
Query: 107 WVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQ 143
++++K +N+ V +H+ G + + F+ + +
Sbjct: 188 MLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQE 224
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 11/210 (5%)
Query: 8 DIQYVNKGVTFSATGIQMDPNPI-LTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYT 66
D + + +TF IQ D + + T F+ E+V VI + +G V+
Sbjct: 80 DTYALEQSLTFVQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGA---SGSSVSIMVANI 136
Query: 67 SGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSD 126
+ IP I +S SD + F R VPP S QA V+++K + V + S
Sbjct: 137 LRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEG 196
Query: 127 TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFK---DQLYEMKNAQARVYLM 183
+ G + F S+ + + I V E + F QL + N++A V +
Sbjct: 197 SYGEKGVESFTQISK-EAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVV--I 253
Query: 184 YASKQDAEIIFKDAQYLNMTETGYVWIVTE 213
+A+ +D + I A+ + ++W+ ++
Sbjct: 254 FANDEDIKQILAAAKRADQV-GHFLWVGSD 282
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 4/135 (2%)
Query: 8 DIQYVNKGVTFSATGIQMDPNPI-LTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYT 66
D + + +TF IQ D + + T F+ E+V VI + +G V+
Sbjct: 80 DTYALEQSLTFVQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGA---SGSSVSIMVANI 136
Query: 67 SGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSD 126
+ IP I +S SD + F R VPP S QA V+++K + V + S
Sbjct: 137 LRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEG 196
Query: 127 TDGRALLGRFQTTSQ 141
+ G + F S+
Sbjct: 197 SYGEKGVESFTQISK 211
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 366 VLGMVWAGFAMIIVASYTANLA--------------AFLVLERPK-TKLTGINDARLRNT 410
++G + +G A + V S++ N A + +L R + T+L+GI+D +L +
Sbjct: 108 LVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGTELSGIHDPKLHHP 167
Query: 411 MENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457
+ TV+ S+ + Y R+ M+ M N D + +K
Sbjct: 168 SQGFRFGTVRESSAEDYVRQS--FPEMHEYMRRYNVPATPDGVQYLK 212
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 19/106 (17%)
Query: 14 KGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIP 73
KG+ I+ PN ++ VC + S I++ L G +++
Sbjct: 71 KGLKAFYDAIKYGPNHLMVFGGVCPSVTS------IIAESLQG-------------WNLV 111
Query: 74 VIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKV 119
+ ++ +DK + F RTVP + ++LLKH+ + +V
Sbjct: 112 QLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRV 157
>pdb|2UVH|A Chain A, Structure Of A Periplasmic Oligogalacturonide Binding
Protein From Yersinia Enterocolitica In Complex With
Saturated Digalacturonic Acid
pdb|2UVI|A Chain A, Structure Of A Periplasmic Oligogalacturonide Binding
Protein From Yersinia Enterocolitica In Complex With
4,5- Unsaturated Digalacturonic Acid
pdb|2UVJ|A Chain A, Structure Of A Periplasmic Oligogalacturonide Binding
Protein From Yersinia Enterocolitica In Complex With
Trigalacturonic Acid
Length = 408
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 67/176 (38%), Gaps = 26/176 (14%)
Query: 30 ILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNI 89
+L A V K + ++ Y V++ H T L SY + Y+IP I +++ A+S
Sbjct: 144 LLAAGKVFKEKLGDQYYPVVLEHQDTLAL---IRSYMTQKYNIPTIDEANKKFAYS---- 196
Query: 90 HVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEI 149
+ WVE + M + S T A G+ S E I
Sbjct: 197 --------------PEQWVEFFTMYKTMVDNHVMPS-TKYYASFGK----SNMYEMKPWI 237
Query: 150 KVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTET 205
+ + +T + D L + Y M +DA + FK AQ L++ ++
Sbjct: 238 NGEWAGTYMWNSTITKYSDNLTKPAKLVLGPYPMLPGAKDAGLFFKPAQMLSIGKS 293
>pdb|2UVG|A Chain A, Structure Of A Periplasmic Oligogalacturonide Binding
Protein From Yersinia Enterocolitica
Length = 408
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 67/176 (38%), Gaps = 26/176 (14%)
Query: 30 ILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNI 89
+L A V K + ++ Y V++ H T L SY + Y+IP I +++ A+S
Sbjct: 144 LLAAGQVFKEKLGDQYYPVVLEHQDTLAL---IRSYMTQKYNIPTIDEANKKFAYS---- 196
Query: 90 HVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEI 149
+ WVE + M + S T A G+ S E I
Sbjct: 197 --------------PEQWVEFFTMYKTMVDNHVMPS-TKYYASFGK----SNMYEMKPWI 237
Query: 150 KVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTET 205
+ + +T + D L + Y M +DA + FK AQ L++ ++
Sbjct: 238 NGEWAGTYMWNSTITKYSDNLTKPAKLVLGPYPMLPGAKDAGLFFKPAQMLSIGKS 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,399,062
Number of Sequences: 62578
Number of extensions: 471845
Number of successful extensions: 1025
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 996
Number of HSP's gapped (non-prelim): 24
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)