Query psy17441
Match_columns 458
No_of_seqs 270 out of 2429
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 22:33:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 4.7E-56 1.6E-60 485.1 30.1 427 2-457 24-685 (823)
2 3qek_A NMDA glutamate receptor 100.0 9.1E-39 3.1E-43 318.2 27.8 273 2-277 25-318 (384)
3 3sm9_A Mglur3, metabotropic gl 100.0 2.6E-35 9E-40 301.2 25.8 243 2-257 51-385 (479)
4 3qel_B Glutamate [NMDA] recept 100.0 9.6E-35 3.3E-39 286.7 28.3 254 14-277 32-302 (364)
5 2e4u_A Metabotropic glutamate 100.0 5.3E-34 1.8E-38 297.2 26.0 243 2-257 52-386 (555)
6 3ks9_A Mglur1, metabotropic gl 100.0 3.1E-34 1.1E-38 294.6 23.8 221 2-233 59-318 (496)
7 3mq4_A Mglur7, metabotropic gl 100.0 1.1E-34 3.9E-39 297.0 13.5 221 2-233 54-309 (481)
8 3o21_A Glutamate receptor 3; p 100.0 9.5E-33 3.2E-37 275.2 26.4 257 2-277 27-323 (389)
9 4f11_A Gamma-aminobutyric acid 100.0 4.1E-33 1.4E-37 281.8 23.7 242 2-257 44-334 (433)
10 1jdp_A NPR-C, atrial natriuret 100.0 4.2E-33 1.4E-37 282.4 22.6 244 2-257 37-335 (441)
11 3om0_A Glutamate receptor, ion 100.0 7.5E-33 2.6E-37 276.3 23.0 259 2-277 29-324 (393)
12 1dp4_A Atrial natriuretic pept 100.0 5.6E-33 1.9E-37 280.8 20.0 244 2-257 31-338 (435)
13 4gpa_A Glutamate receptor 4; P 100.0 5.1E-32 1.7E-36 269.2 25.9 239 2-259 27-299 (389)
14 3h6g_A Glutamate receptor, ion 100.0 1.1E-31 3.6E-36 268.1 23.7 257 2-277 30-325 (395)
15 3hsy_A Glutamate receptor 2; l 100.0 4.3E-30 1.5E-34 254.8 23.7 231 2-257 24-293 (376)
16 3saj_A Glutamate receptor 1; r 100.0 2.9E-29 9.8E-34 249.6 21.4 243 2-270 32-312 (384)
17 3i45_A Twin-arginine transloca 99.9 2.2E-26 7.4E-31 228.9 18.0 241 2-255 32-304 (387)
18 4f06_A Extracellular ligand-bi 99.9 2E-25 6.9E-30 220.8 22.8 237 2-254 33-302 (371)
19 3h5l_A Putative branched-chain 99.9 2.8E-25 9.5E-30 223.3 19.2 238 2-255 42-323 (419)
20 3i09_A Periplasmic branched-ch 99.9 1.3E-24 4.3E-29 215.1 22.6 239 2-255 33-298 (375)
21 3n0w_A ABC branched chain amin 99.9 9.7E-25 3.3E-29 216.4 21.0 239 2-255 35-301 (379)
22 3ipc_A ABC transporter, substr 99.9 1.6E-24 5.3E-29 212.8 19.3 238 2-255 30-294 (356)
23 3n0x_A Possible substrate bind 99.9 3.5E-24 1.2E-28 212.0 20.7 240 2-255 32-303 (374)
24 4eyg_A Twin-arginine transloca 99.9 5.2E-24 1.8E-28 209.9 21.6 231 12-255 41-300 (368)
25 1usg_A Leucine-specific bindin 99.9 4.2E-24 1.4E-28 208.7 20.3 237 2-254 30-294 (346)
26 3hut_A Putative branched-chain 99.9 1.4E-23 4.9E-28 206.0 22.5 237 2-255 32-297 (358)
27 3td9_A Branched chain amino ac 99.9 1.6E-23 5.4E-28 206.5 21.8 233 2-255 44-308 (366)
28 4gnr_A ABC transporter substra 99.9 7.9E-24 2.7E-28 207.6 19.0 232 2-253 35-299 (353)
29 3lop_A Substrate binding perip 99.9 8.1E-24 2.8E-28 208.5 18.7 236 2-255 33-304 (364)
30 4evq_A Putative ABC transporte 99.9 2.4E-23 8.4E-28 205.6 21.7 236 2-255 44-308 (375)
31 3lkb_A Probable branched-chain 99.9 4.1E-23 1.4E-27 205.5 19.2 238 2-256 35-306 (392)
32 3eaf_A ABC transporter, substr 99.9 8.3E-23 2.8E-27 203.3 20.0 235 2-254 32-307 (391)
33 3sg0_A Extracellular ligand-bi 99.9 1.4E-21 4.8E-26 193.6 20.8 230 14-256 59-327 (386)
34 3snr_A Extracellular ligand-bi 99.9 1.8E-20 6.2E-25 183.8 23.6 226 14-255 39-302 (362)
35 1pea_A Amidase operon; gene re 99.9 2.3E-20 8E-25 185.2 21.1 237 2-255 35-304 (385)
36 2h4a_A YRAM (HI1655); perplasm 99.7 8.6E-18 2.9E-22 162.4 13.4 220 15-256 30-279 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 99.7 3E-16 1E-20 152.1 14.4 218 14-252 31-278 (327)
38 2ih3_C Voltage-gated potassium 98.5 1.2E-07 4.2E-12 77.1 6.3 78 303-392 39-116 (122)
39 2k1e_A Water soluble analogue 98.5 7.9E-08 2.7E-12 75.8 3.9 79 303-393 18-96 (103)
40 2a9h_A Voltage-gated potassium 98.4 4.8E-07 1.7E-11 76.6 6.6 80 303-394 62-141 (155)
41 3eff_K Voltage-gated potassium 98.3 6.7E-07 2.3E-11 74.6 6.1 75 304-390 19-93 (139)
42 4h33_A LMO2059 protein; bilaye 98.3 9.2E-07 3.2E-11 73.4 6.1 56 337-392 43-98 (137)
43 3ldc_A Calcium-gated potassium 98.1 7.1E-06 2.4E-10 61.4 6.4 53 337-389 28-80 (82)
44 3ouf_A Potassium channel prote 98.0 3.7E-06 1.3E-10 65.2 4.4 59 337-395 32-90 (97)
45 2q67_A Potassium channel prote 98.0 8E-06 2.8E-10 65.3 6.0 57 337-393 49-105 (114)
46 3gbv_A Putative LACI-family tr 97.9 0.001 3.4E-08 62.4 18.9 216 15-251 40-269 (304)
47 3brs_A Periplasmic binding pro 97.8 0.0038 1.3E-07 58.0 22.5 217 15-252 37-262 (289)
48 3vou_A ION transport 2 domain 97.8 2.6E-05 9E-10 65.5 6.7 55 337-391 52-106 (148)
49 1orq_C Potassium channel; volt 97.8 2.3E-05 8E-10 70.8 5.7 57 335-391 163-219 (223)
50 3o74_A Fructose transport syst 97.8 0.0058 2E-07 56.1 22.0 215 14-252 31-250 (272)
51 2h3h_A Sugar ABC transporter, 97.7 0.0025 8.4E-08 60.2 19.5 216 15-252 30-254 (313)
52 3ksm_A ABC-type sugar transpor 97.6 0.0021 7.3E-08 59.1 16.9 217 15-251 30-258 (276)
53 3pjs_K KCSA, voltage-gated pot 97.6 1.2E-05 4.1E-10 69.0 1.0 58 334-391 64-121 (166)
54 3rot_A ABC sugar transporter, 97.6 0.0038 1.3E-07 58.4 17.7 221 15-252 33-263 (297)
55 3hcw_A Maltose operon transcri 97.5 0.024 8.2E-07 52.8 22.8 215 14-252 41-263 (295)
56 2rjo_A Twin-arginine transloca 97.5 0.006 2E-07 58.1 18.7 186 15-214 35-232 (332)
57 1dbq_A Purine repressor; trans 97.5 0.0072 2.5E-07 56.0 18.5 216 15-252 37-258 (289)
58 3brq_A HTH-type transcriptiona 97.5 0.0093 3.2E-07 55.4 19.3 215 15-252 51-271 (296)
59 2iks_A DNA-binding transcripti 97.5 0.017 5.9E-07 53.6 21.0 212 15-251 50-267 (293)
60 2rgy_A Transcriptional regulat 97.4 0.031 1E-06 51.9 22.2 198 36-253 59-261 (290)
61 2qh8_A Uncharacterized protein 97.4 0.003 1E-07 59.4 15.1 170 14-202 40-217 (302)
62 3beh_A MLL3241 protein; transm 97.4 0.00018 6.2E-09 69.7 6.5 79 302-392 138-216 (355)
63 3c3k_A Alanine racemase; struc 97.4 0.016 5.6E-07 53.6 19.8 211 14-251 37-254 (285)
64 1xl4_A Inward rectifier potass 97.4 0.00025 8.5E-09 66.7 7.0 59 335-393 80-138 (301)
65 1p7b_A Integral membrane chann 97.4 0.0002 6.7E-09 68.2 6.3 60 335-394 94-153 (333)
66 3egc_A Putative ribose operon 97.4 0.016 5.4E-07 53.8 19.2 216 14-252 37-257 (291)
67 2h0a_A TTHA0807, transcription 97.4 0.0028 9.4E-08 58.5 13.8 192 37-251 48-248 (276)
68 3k4h_A Putative transcriptiona 97.3 0.016 5.5E-07 53.7 18.5 216 15-252 43-263 (292)
69 2fn9_A Ribose ABC transporter, 97.3 0.018 6.1E-07 53.4 18.7 214 15-251 32-262 (290)
70 3dbi_A Sugar-binding transcrip 97.3 0.024 8.1E-07 54.0 19.9 215 15-251 93-312 (338)
71 3bbl_A Regulatory protein of L 97.3 0.017 5.7E-07 53.6 18.2 195 37-251 57-258 (287)
72 2qu7_A Putative transcriptiona 97.3 0.0036 1.2E-07 58.2 13.5 213 14-251 36-257 (288)
73 3um7_A Potassium channel subfa 97.3 0.00048 1.6E-08 64.6 7.2 58 334-391 112-169 (309)
74 3g1w_A Sugar ABC transporter; 97.2 0.027 9.4E-07 52.5 19.6 217 15-251 34-258 (305)
75 1tjy_A Sugar transport protein 97.2 0.03 1E-06 52.8 19.8 184 15-214 33-223 (316)
76 2qks_A KIR3.1-prokaryotic KIR 97.2 0.00055 1.9E-08 64.9 7.2 59 336-394 77-135 (321)
77 2r9r_B Paddle chimera voltage 97.2 0.00055 1.9E-08 69.6 7.6 56 336-391 374-429 (514)
78 3k9c_A Transcriptional regulat 97.2 0.11 3.7E-06 48.1 23.1 213 14-252 40-256 (289)
79 2o20_A Catabolite control prot 97.2 0.021 7.1E-07 54.2 18.4 214 15-251 93-309 (332)
80 3l6u_A ABC-type sugar transpor 97.2 0.015 5.1E-07 54.0 16.9 213 15-251 38-265 (293)
81 2x7x_A Sensor protein; transfe 97.2 0.027 9.1E-07 53.3 18.8 180 15-214 36-223 (325)
82 2fep_A Catabolite control prot 97.2 0.047 1.6E-06 50.6 20.0 215 14-251 45-265 (289)
83 2vk2_A YTFQ, ABC transporter p 97.1 0.036 1.2E-06 51.9 19.2 220 15-252 32-264 (306)
84 3h75_A Periplasmic sugar-bindi 97.1 0.036 1.2E-06 53.0 19.6 222 15-251 34-277 (350)
85 3lft_A Uncharacterized protein 97.1 0.017 6E-07 53.8 16.6 167 17-202 36-210 (295)
86 1qpz_A PURA, protein (purine n 97.1 0.048 1.6E-06 51.9 19.8 216 15-252 88-309 (340)
87 2hsg_A Glucose-resistance amyl 97.1 0.045 1.5E-06 51.9 19.4 199 33-251 105-309 (332)
88 3o1i_D Periplasmic protein TOR 97.1 0.01 3.5E-07 55.4 14.6 176 15-203 35-218 (304)
89 2ioy_A Periplasmic sugar-bindi 97.1 0.065 2.2E-06 49.4 19.9 180 15-214 31-217 (283)
90 2fvy_A D-galactose-binding per 97.1 0.039 1.3E-06 51.5 18.5 176 15-201 32-226 (309)
91 3l49_A ABC sugar (ribose) tran 97.0 0.039 1.3E-06 51.0 18.0 213 15-252 35-264 (291)
92 3d02_A Putative LACI-type tran 96.9 0.02 6.7E-07 53.4 15.2 184 15-214 34-224 (303)
93 3gyb_A Transcriptional regulat 96.9 0.013 4.6E-07 53.9 13.8 210 14-251 34-246 (280)
94 3jy6_A Transcriptional regulat 96.9 0.11 3.7E-06 47.6 19.9 209 14-251 36-251 (276)
95 3ukm_A Potassium channel subfa 96.9 0.00048 1.7E-08 63.6 3.5 70 336-405 200-276 (280)
96 3clk_A Transcription regulator 96.8 0.0082 2.8E-07 55.8 11.4 197 35-252 56-256 (290)
97 4gx0_A TRKA domain protein; me 96.8 0.00092 3.2E-08 69.0 5.2 56 336-391 50-106 (565)
98 3lkv_A Uncharacterized conserv 96.8 0.039 1.3E-06 51.8 15.9 161 8-187 35-203 (302)
99 3qk7_A Transcriptional regulat 96.7 0.16 5.3E-06 47.1 19.6 214 14-251 39-258 (294)
100 3d8u_A PURR transcriptional re 96.7 0.025 8.4E-07 51.9 13.9 214 15-251 33-251 (275)
101 3kke_A LACI family transcripti 96.7 0.068 2.3E-06 49.9 17.0 212 15-251 45-267 (303)
102 3h5o_A Transcriptional regulat 96.7 0.14 4.8E-06 48.6 19.3 214 15-251 92-309 (339)
103 8abp_A L-arabinose-binding pro 96.7 0.064 2.2E-06 49.9 16.6 223 15-251 32-271 (306)
104 3e61_A Putative transcriptiona 96.7 0.12 4.1E-06 47.3 18.1 206 15-252 38-248 (277)
105 1jx6_A LUXP protein; protein-l 96.6 0.056 1.9E-06 51.3 16.2 187 15-213 74-267 (342)
106 3huu_A Transcription regulator 96.6 0.11 3.9E-06 48.3 18.0 195 33-251 72-272 (305)
107 3gv0_A Transcriptional regulat 96.5 0.02 6.9E-07 53.1 11.9 215 14-251 39-258 (288)
108 3m9w_A D-xylose-binding peripl 96.5 0.13 4.6E-06 48.0 17.4 184 15-213 32-222 (313)
109 3kjx_A Transcriptional regulat 96.5 0.12 4.2E-06 49.1 17.3 215 15-252 98-318 (344)
110 1lnq_A MTHK channels, potassiu 96.4 0.00012 4E-09 70.5 -4.4 59 337-395 45-103 (336)
111 1jye_A Lactose operon represso 96.4 0.22 7.4E-06 47.5 18.8 196 34-251 108-308 (349)
112 3bil_A Probable LACI-family tr 96.4 0.063 2.2E-06 51.3 14.8 196 34-251 112-311 (348)
113 3tb6_A Arabinose metabolism tr 96.4 0.049 1.7E-06 50.4 13.7 218 14-251 44-271 (298)
114 3ctp_A Periplasmic binding pro 96.4 0.11 3.7E-06 49.2 16.3 209 15-252 90-302 (330)
115 3g85_A Transcriptional regulat 96.4 0.038 1.3E-06 51.0 12.8 193 37-251 61-260 (289)
116 3jvd_A Transcriptional regulat 96.3 0.39 1.3E-05 45.4 19.9 189 34-252 109-302 (333)
117 3e3m_A Transcriptional regulat 96.3 0.15 5E-06 48.8 16.6 199 34-252 116-321 (355)
118 2dri_A D-ribose-binding protei 96.3 0.49 1.7E-05 43.0 19.6 180 15-214 31-216 (271)
119 4fe7_A Xylose operon regulator 96.2 0.23 7.7E-06 48.7 17.9 158 39-212 71-237 (412)
120 3cs3_A Sugar-binding transcrip 96.2 0.098 3.3E-06 47.9 14.3 150 44-212 57-211 (277)
121 1byk_A Protein (trehalose oper 96.1 0.13 4.6E-06 46.3 14.7 205 15-251 32-239 (255)
122 3ukm_A Potassium channel subfa 96.1 0.0046 1.6E-07 57.0 4.5 59 333-391 89-147 (280)
123 1gud_A ALBP, D-allose-binding 95.9 0.82 2.8E-05 41.9 19.5 209 26-251 42-264 (288)
124 3hs3_A Ribose operon repressor 95.8 0.29 9.9E-06 44.8 15.8 202 15-251 40-248 (277)
125 3um7_A Potassium channel subfa 95.8 0.0066 2.2E-07 56.9 4.4 54 337-390 224-283 (309)
126 3h5t_A Transcriptional regulat 95.7 0.098 3.4E-06 50.3 12.7 214 15-251 101-336 (366)
127 3miz_A Putative transcriptiona 95.6 0.12 4E-06 48.0 12.3 214 15-251 44-268 (301)
128 3sya_A G protein-activated inw 95.5 0.025 8.6E-07 53.6 7.1 61 335-395 89-151 (340)
129 2fqx_A Membrane lipoprotein TM 95.1 0.93 3.2E-05 42.5 16.8 162 35-213 53-222 (318)
130 3uug_A Multiple sugar-binding 94.6 0.41 1.4E-05 44.9 12.9 177 15-207 33-233 (330)
131 3ixl_A Amdase, arylmalonate de 93.6 0.75 2.6E-05 41.4 11.9 125 35-196 57-199 (240)
132 3spc_A Inward-rectifier K+ cha 93.4 0.064 2.2E-06 50.9 4.5 61 335-395 92-154 (343)
133 2rc8_A Glutamate [NMDA] recept 93.3 0.14 4.8E-06 47.5 6.8 68 388-458 146-213 (294)
134 3rvy_A ION transport protein; 92.5 0.082 2.8E-06 49.1 3.9 60 335-394 178-243 (285)
135 1yae_A Glutamate receptor, ion 92.1 0.2 6.8E-06 46.8 6.0 64 391-457 147-216 (312)
136 2hqb_A Transcriptional activat 90.1 11 0.00038 34.5 17.1 147 35-201 54-204 (296)
137 1pb7_A N-methyl-D-aspartate re 88.5 0.86 2.9E-05 42.0 7.0 62 397-458 154-215 (292)
138 3qi7_A Putative transcriptiona 88.1 14 0.00049 35.1 15.1 182 33-231 76-272 (371)
139 2nr1_A NR1 M2, M2; receptor, s 87.8 0.092 3.1E-06 28.9 -0.2 21 333-353 4-24 (27)
140 2xed_A Putative maleate isomer 85.8 5 0.00017 36.7 10.4 79 104-189 134-220 (273)
141 2q5c_A NTRC family transcripti 85.1 17 0.0006 31.1 15.3 85 97-203 77-162 (196)
142 3g3k_A Glutamate receptor, ion 84.9 2.4 8.1E-05 37.8 7.7 72 381-457 105-182 (259)
143 2dgd_A 223AA long hypothetical 82.8 14 0.00049 32.2 11.8 79 104-189 96-183 (223)
144 3s99_A Basic membrane lipoprot 82.0 35 0.0012 32.3 19.5 150 34-202 76-230 (356)
145 2l82_A Designed protein OR32; 78.7 19 0.00065 27.2 11.4 104 93-213 4-111 (162)
146 3g1w_A Sugar ABC transporter; 76.8 8.8 0.0003 34.9 8.7 81 117-203 5-88 (305)
147 3m9w_A D-xylose-binding peripl 76.6 11 0.00038 34.5 9.4 80 117-203 3-85 (313)
148 3dbi_A Sugar-binding transcrip 75.8 15 0.00051 34.1 10.2 85 111-202 56-144 (338)
149 3ox4_A Alcohol dehydrogenase 2 74.3 6.6 0.00022 37.8 7.2 90 105-198 20-111 (383)
150 3gbv_A Putative LACI-family tr 73.9 20 0.00068 32.3 10.3 85 115-203 7-96 (304)
151 1ii5_A SLR1257 protein; membra 73.7 3.4 0.00012 35.7 4.8 57 387-457 96-152 (233)
152 3l49_A ABC sugar (ribose) tran 72.7 22 0.00074 31.9 10.2 80 117-203 6-88 (291)
153 3jy6_A Transcriptional regulat 72.4 20 0.00068 32.0 9.8 78 117-203 8-87 (276)
154 2pju_A Propionate catabolism o 71.4 52 0.0018 28.8 12.0 86 97-203 89-174 (225)
155 3h75_A Periplasmic sugar-bindi 71.3 20 0.00068 33.4 9.8 81 116-203 3-88 (350)
156 4dz1_A DALS D-alanine transpor 70.6 4 0.00014 36.3 4.6 65 387-457 117-181 (259)
157 3k4u_A Binding component of AB 70.5 2.8 9.5E-05 36.9 3.4 66 382-457 88-153 (245)
158 3h7m_A Sensor protein; histidi 70.0 3.4 0.00012 35.7 3.8 53 393-457 103-155 (234)
159 3o74_A Fructose transport syst 68.1 11 0.00039 33.4 7.1 80 117-203 3-84 (272)
160 3mpk_A Virulence sensor protei 67.9 2.9 0.0001 37.5 3.0 54 392-457 124-177 (267)
161 3l6u_A ABC-type sugar transpor 67.3 23 0.00079 31.7 9.1 82 115-203 7-91 (293)
162 3hv1_A Polar amino acid ABC up 67.0 3 0.0001 37.3 2.8 63 387-457 109-172 (268)
163 3del_B Arginine binding protei 66.0 4.3 0.00015 35.4 3.7 48 397-457 108-155 (242)
164 4f3p_A Glutamine-binding perip 66.0 2.6 9E-05 37.2 2.2 58 387-457 111-168 (249)
165 1mkz_A Molybdenum cofactor bio 65.9 25 0.00084 29.4 8.2 63 117-185 11-77 (172)
166 3uug_A Multiple sugar-binding 65.7 27 0.00091 32.0 9.4 80 117-203 4-86 (330)
167 4i62_A Amino acid ABC transpor 65.7 3.8 0.00013 36.4 3.3 59 387-457 130-188 (269)
168 3kbr_A Cyclohexadienyl dehydra 65.5 2.7 9.1E-05 36.7 2.1 61 387-457 103-163 (239)
169 2pyy_A Ionotropic glutamate re 64.9 6.1 0.00021 33.8 4.4 47 397-457 102-148 (228)
170 3bfj_A 1,3-propanediol oxidore 64.6 13 0.00045 35.7 7.1 86 106-197 23-114 (387)
171 8abp_A L-arabinose-binding pro 64.4 31 0.0011 31.1 9.4 79 117-203 3-84 (306)
172 3d02_A Putative LACI-type tran 64.2 28 0.00095 31.4 9.0 81 117-203 5-88 (303)
173 3tb6_A Arabinose metabolism tr 63.6 33 0.0011 30.7 9.4 80 117-203 16-101 (298)
174 2l69_A Rossmann 2X3 fold prote 62.9 41 0.0014 24.6 7.5 38 92-129 27-64 (134)
175 2zsk_A PH1733, 226AA long hypo 62.8 20 0.00069 31.3 7.4 43 31-77 60-102 (226)
176 3h5o_A Transcriptional regulat 62.3 30 0.001 31.9 9.1 85 111-203 57-143 (339)
177 4h5g_A Amino acid ABC superfam 62.2 5.4 0.00018 35.1 3.6 65 381-457 97-161 (243)
178 4dik_A Flavoprotein; TM0755, e 62.1 51 0.0017 31.8 10.7 93 117-218 266-366 (410)
179 2a5s_A N-methyl-D-aspartate re 62.0 10 0.00034 34.4 5.5 75 380-458 127-204 (284)
180 4gvo_A LMO2349 protein; struct 61.8 13 0.00044 32.5 6.1 44 381-430 92-135 (243)
181 1jye_A Lactose operon represso 61.3 26 0.00091 32.6 8.5 81 115-202 60-143 (349)
182 3kke_A LACI family transcripti 61.2 29 0.001 31.4 8.6 86 110-203 9-96 (303)
183 3rot_A ABC sugar transporter, 61.2 22 0.00075 32.1 7.7 80 117-203 4-88 (297)
184 3hl0_A Maleylacetate reductase 61.1 14 0.00048 35.0 6.4 81 106-194 24-106 (353)
185 3e3m_A Transcriptional regulat 60.9 49 0.0017 30.8 10.3 85 111-203 65-151 (355)
186 3k9c_A Transcriptional regulat 60.8 33 0.0011 30.8 8.9 83 111-203 7-90 (289)
187 3tql_A Arginine-binding protei 60.6 7.6 0.00026 33.1 4.2 54 392-457 94-148 (227)
188 1rrm_A Lactaldehyde reductase; 60.3 14 0.00047 35.5 6.3 87 106-198 21-111 (386)
189 3uhj_A Probable glycerol dehyd 60.1 18 0.00062 34.7 7.1 73 106-188 43-117 (387)
190 3ce9_A Glycerol dehydrogenase; 59.9 23 0.00078 33.5 7.7 97 107-215 25-123 (354)
191 1wdn_A GLNBP, glutamine bindin 59.9 7.1 0.00024 33.3 3.8 50 396-457 98-147 (226)
192 3bil_A Probable LACI-family tr 59.8 35 0.0012 31.8 9.0 79 117-203 67-147 (348)
193 1tjy_A Sugar transport protein 59.8 14 0.00049 33.9 6.2 80 117-202 4-86 (316)
194 1jx6_A LUXP protein; protein-l 59.7 40 0.0014 31.0 9.4 81 117-202 44-129 (342)
195 3qax_A Probable ABC transporte 59.7 6.3 0.00022 34.8 3.6 52 393-457 125-176 (268)
196 2fn9_A Ribose ABC transporter, 59.6 42 0.0014 29.9 9.3 80 117-203 3-85 (290)
197 3jzd_A Iron-containing alcohol 59.4 14 0.00048 35.1 6.1 95 106-214 26-123 (358)
198 3qk7_A Transcriptional regulat 59.4 40 0.0014 30.3 9.2 79 116-203 6-90 (294)
199 2fep_A Catabolite control prot 58.0 50 0.0017 29.5 9.5 79 117-203 17-97 (289)
200 1vlj_A NADH-dependent butanol 57.9 23 0.0008 34.2 7.5 86 106-196 33-122 (407)
201 3ksm_A ABC-type sugar transpor 57.7 23 0.0008 31.3 7.1 80 118-203 2-86 (276)
202 1mqi_A Glutamate receptor 2; G 57.2 24 0.00081 31.0 7.0 70 382-456 106-181 (263)
203 2y7i_A STM4351; arginine-bindi 56.9 7.5 0.00025 33.4 3.5 47 399-457 104-150 (229)
204 3p6l_A Sugar phosphate isomera 56.8 66 0.0023 28.3 10.0 93 105-203 25-130 (262)
205 2iks_A DNA-binding transcripti 56.8 32 0.0011 30.9 8.0 85 111-202 15-101 (293)
206 2fvy_A D-galactose-binding per 56.8 68 0.0023 28.7 10.3 81 117-203 3-86 (309)
207 2fqx_A Membrane lipoprotein TM 56.7 58 0.002 29.9 9.9 63 117-187 5-72 (318)
208 2eq5_A 228AA long hypothetical 56.2 18 0.00062 31.6 5.9 116 36-188 67-185 (228)
209 2iee_A ORF2, probable ABC tran 55.9 7 0.00024 35.0 3.2 62 382-457 107-170 (271)
210 3kzg_A Arginine 3RD transport 55.6 8.7 0.0003 33.3 3.7 48 398-457 101-148 (237)
211 2o20_A Catabolite control prot 55.6 53 0.0018 30.1 9.5 83 112-202 59-143 (332)
212 3brq_A HTH-type transcriptiona 54.5 72 0.0025 28.3 10.0 85 111-203 14-103 (296)
213 3lmz_A Putative sugar isomeras 53.9 94 0.0032 27.2 10.5 94 105-203 33-128 (257)
214 3egc_A Putative ribose operon 53.0 28 0.00097 31.2 6.9 81 115-203 7-89 (291)
215 3kjx_A Transcriptional regulat 52.7 85 0.0029 28.8 10.5 79 117-203 69-149 (344)
216 2q88_A EHUB, putative ABC tran 52.3 14 0.00049 32.3 4.7 68 382-457 96-163 (257)
217 1o2d_A Alcohol dehydrogenase, 52.0 36 0.0012 32.3 7.7 86 106-197 31-120 (371)
218 3gv0_A Transcriptional regulat 51.8 59 0.002 29.0 8.9 81 115-203 7-91 (288)
219 2rjo_A Twin-arginine transloca 51.7 55 0.0019 29.9 8.9 79 117-202 6-89 (332)
220 3huu_A Transcription regulator 51.6 24 0.00081 32.0 6.2 86 110-203 16-108 (305)
221 2h3h_A Sugar ABC transporter, 51.4 42 0.0014 30.5 7.9 80 118-203 3-84 (313)
222 3k4h_A Putative transcriptiona 50.3 35 0.0012 30.4 7.1 81 115-203 7-94 (292)
223 2dwu_A Glutamate racemase; iso 49.8 50 0.0017 29.9 7.9 43 31-76 56-98 (276)
224 3s81_A Putative aspartate race 49.5 24 0.00081 32.0 5.6 46 28-77 83-128 (268)
225 4eq9_A ABC transporter substra 49.3 34 0.0012 29.3 6.7 61 387-457 96-159 (246)
226 2fp4_A Succinyl-COA ligase [GD 49.2 1.6E+02 0.0054 27.0 13.4 145 28-199 79-234 (305)
227 3hs3_A Ribose operon repressor 48.5 48 0.0016 29.4 7.7 69 111-185 5-75 (277)
228 1y5e_A Molybdenum cofactor bio 48.4 59 0.002 26.9 7.6 67 114-186 11-81 (169)
229 2vha_A Periplasmic binding tra 48.2 11 0.00038 33.8 3.3 53 397-457 120-172 (287)
230 2gzm_A Glutamate racemase; enz 48.2 22 0.00075 32.1 5.2 43 31-77 52-95 (267)
231 3e61_A Putative transcriptiona 46.9 57 0.002 28.7 7.9 78 116-203 8-88 (277)
232 2rgy_A Transcriptional regulat 46.3 77 0.0026 28.2 8.8 80 116-203 8-92 (290)
233 2ioy_A Periplasmic sugar-bindi 46.3 83 0.0028 27.9 9.0 80 117-203 2-84 (283)
234 2is8_A Molybdopterin biosynthe 46.1 60 0.0021 26.7 7.2 63 118-186 3-71 (164)
235 2x7x_A Sensor protein; transfe 45.1 1.2E+02 0.0043 27.4 10.2 81 116-203 6-89 (325)
236 3rfq_A Pterin-4-alpha-carbinol 45.0 54 0.0018 27.7 6.8 63 117-185 31-97 (185)
237 2yln_A Putative ABC transporte 44.8 17 0.0006 32.6 4.0 48 396-457 153-200 (283)
238 3jvd_A Transcriptional regulat 44.7 28 0.00094 32.2 5.5 68 111-186 59-128 (333)
239 2l69_A Rossmann 2X3 fold prote 44.6 89 0.003 22.8 6.8 69 93-174 53-121 (134)
240 2yjp_A Putative ABC transporte 44.4 14 0.00049 33.4 3.4 48 398-457 155-202 (291)
241 1jq5_A Glycerol dehydrogenase; 43.8 53 0.0018 31.1 7.4 80 107-195 23-106 (370)
242 3clk_A Transcription regulator 43.7 45 0.0015 29.8 6.7 79 117-202 9-89 (290)
243 3d8u_A PURR transcriptional re 43.4 77 0.0026 27.8 8.2 79 117-203 4-84 (275)
244 2g2c_A Putative molybdenum cof 43.2 72 0.0025 26.3 7.3 62 118-185 7-77 (167)
245 2dri_A D-ribose-binding protei 43.2 86 0.003 27.5 8.5 80 117-203 2-84 (271)
246 2yxb_A Coenzyme B12-dependent 42.4 1.4E+02 0.0047 24.3 10.8 87 117-214 19-109 (161)
247 2vk2_A YTFQ, ABC transporter p 42.1 91 0.0031 28.0 8.6 80 117-203 3-85 (306)
248 3brs_A Periplasmic binding pro 41.9 30 0.001 30.9 5.2 79 117-202 6-91 (289)
249 2v3u_A Glutamate receptor delt 41.9 49 0.0017 28.7 6.6 59 396-457 114-185 (265)
250 1dbq_A Purine repressor; trans 41.0 1.6E+02 0.0055 25.8 10.1 64 117-187 8-73 (289)
251 1lst_A Lysine, arginine, ornit 40.6 61 0.0021 27.5 6.9 48 400-457 104-151 (239)
252 2pjk_A 178AA long hypothetical 40.5 76 0.0026 26.5 7.1 66 114-185 13-89 (178)
253 3fni_A Putative diflavin flavo 40.5 1.4E+02 0.0049 24.0 8.8 89 117-216 5-99 (159)
254 3hcw_A Maltose operon transcri 40.4 49 0.0017 29.7 6.4 79 117-203 8-93 (295)
255 2bon_A Lipid kinase; DAG kinas 40.2 90 0.0031 28.9 8.3 76 117-200 30-105 (332)
256 1y80_A Predicted cobalamin bin 39.7 1.7E+02 0.006 24.7 10.5 89 117-215 89-181 (210)
257 1jfl_A Aspartate racemase; alp 39.2 18 0.00062 31.7 3.1 46 28-77 58-103 (228)
258 1xt8_A Putative amino-acid tra 39.0 18 0.00063 32.5 3.2 48 398-457 144-191 (292)
259 1zuw_A Glutamate racemase 1; ( 38.7 33 0.0011 31.0 4.8 44 31-77 52-96 (272)
260 3okf_A 3-dehydroquinate syntha 38.1 86 0.0029 30.0 7.8 93 110-213 56-158 (390)
261 3miz_A Putative transcriptiona 37.9 33 0.0011 30.9 4.8 85 109-202 6-93 (301)
262 3umf_A Adenylate kinase; rossm 37.6 10 0.00036 33.2 1.2 38 38-78 24-61 (217)
263 3ojc_A Putative aspartate/glut 37.5 20 0.00068 31.6 3.0 43 30-76 62-104 (231)
264 3c3k_A Alanine racemase; struc 37.3 1.8E+02 0.0061 25.6 9.7 78 116-202 8-87 (285)
265 1gud_A ALBP, D-allose-binding 37.1 1.1E+02 0.0039 27.0 8.3 80 117-202 2-85 (288)
266 3bbl_A Regulatory protein of L 34.9 88 0.003 27.7 7.2 79 117-203 5-89 (287)
267 2hsg_A Glucose-resistance amyl 34.8 98 0.0033 28.2 7.7 79 116-202 60-140 (332)
268 3h5t_A Transcriptional regulat 34.3 1.3E+02 0.0044 27.8 8.5 77 117-203 69-153 (366)
269 3ezx_A MMCP 1, monomethylamine 34.1 2.2E+02 0.0077 24.4 10.0 89 117-215 93-187 (215)
270 2pvu_A ARTJ; basic amino acid 33.7 43 0.0015 29.5 4.8 50 397-457 137-186 (272)
271 3pzy_A MOG; ssgcid, seattle st 33.5 54 0.0018 27.1 4.9 62 117-185 8-74 (164)
272 3iwt_A 178AA long hypothetical 33.3 1.1E+02 0.0038 25.3 7.0 62 118-185 17-89 (178)
273 2qv7_A Diacylglycerol kinase D 32.8 1.8E+02 0.0062 26.8 9.1 82 110-199 18-102 (337)
274 1ccw_A Protein (glutamate muta 32.2 1.8E+02 0.0063 22.8 10.2 86 118-214 5-94 (137)
275 3iv7_A Alcohol dehydrogenase I 31.9 43 0.0015 31.8 4.5 94 105-214 26-122 (364)
276 3to5_A CHEY homolog; alpha(5)b 31.9 1.8E+02 0.0063 22.7 8.8 48 166-213 46-95 (134)
277 2hqb_A Transcriptional activat 31.8 71 0.0024 28.9 6.0 64 117-187 6-73 (296)
278 2h0a_A TTHA0807, transcription 31.5 65 0.0022 28.3 5.6 76 119-202 2-79 (276)
279 3lft_A Uncharacterized protein 31.4 1.1E+02 0.0037 27.4 7.2 65 117-186 3-71 (295)
280 3hly_A Flavodoxin-like domain; 31.3 1.8E+02 0.0061 23.4 7.9 87 118-215 2-93 (161)
281 3g85_A Transcriptional regulat 30.9 53 0.0018 29.2 4.9 81 114-202 9-92 (289)
282 3tsm_A IGPS, indole-3-glycerol 30.3 1.5E+02 0.0052 26.7 7.7 113 105-233 82-200 (272)
283 2jfq_A Glutamate racemase; cel 30.2 37 0.0012 31.0 3.6 44 31-77 71-114 (286)
284 4dxw_A Navrh, ION transport pr 30.2 1E+02 0.0035 26.6 6.5 53 335-387 163-220 (229)
285 3kbq_A Protein TA0487; structu 29.4 1.3E+02 0.0045 25.0 6.6 61 118-185 5-70 (172)
286 3sr0_A Adenylate kinase; phosp 28.9 27 0.00093 30.1 2.4 31 45-78 2-32 (206)
287 3guv_A Site-specific recombina 28.5 1.1E+02 0.0039 24.8 6.2 38 165-202 61-106 (167)
288 2qu7_A Putative transcriptiona 28.4 1.3E+02 0.0045 26.5 7.2 65 116-187 8-73 (288)
289 2dfa_A Hypothetical UPF0271 pr 27.7 2.9E+02 0.0099 24.4 8.7 92 46-146 139-246 (250)
290 2v25_A Major cell-binding fact 27.5 89 0.003 26.7 5.7 54 396-457 137-190 (259)
291 1jlj_A Gephyrin; globular alph 27.0 1.8E+02 0.006 24.5 7.2 67 114-186 12-87 (189)
292 1i4n_A Indole-3-glycerol phosp 25.9 2.7E+02 0.0093 24.6 8.5 112 105-233 64-182 (251)
293 1oj7_A Hypothetical oxidoreduc 25.7 1.1E+02 0.0037 29.4 6.3 81 107-196 43-127 (408)
294 1byk_A Protein (trehalose oper 25.6 1.6E+02 0.0056 25.2 7.2 63 117-186 3-67 (255)
295 3lkv_A Uncharacterized conserv 25.5 1.2E+02 0.0042 27.3 6.5 68 117-186 9-78 (302)
296 3hzh_A Chemotaxis response reg 25.4 2.4E+02 0.0082 21.9 8.9 34 168-201 72-109 (157)
297 3grc_A Sensor protein, kinase; 25.2 2.2E+02 0.0075 21.4 8.8 69 133-214 19-89 (140)
298 1qpz_A PURA, protein (purine n 25.2 3.8E+02 0.013 24.2 11.5 69 112-187 54-124 (340)
299 1sg6_A Pentafunctional AROM po 25.1 4.4E+02 0.015 24.9 11.4 94 110-214 30-141 (393)
300 3o1i_D Periplasmic protein TOR 25.1 1.3E+02 0.0043 26.8 6.4 79 117-203 6-89 (304)
301 3ctp_A Periplasmic binding pro 25.1 1.7E+02 0.0058 26.5 7.4 65 115-187 59-125 (330)
302 3i42_A Response regulator rece 25.0 2.1E+02 0.0071 21.1 10.7 69 133-214 16-86 (127)
303 1usg_A Leucine-specific bindin 24.5 2.4E+02 0.0083 25.3 8.5 79 118-202 4-94 (346)
304 3s99_A Basic membrane lipoprot 24.4 2E+02 0.0068 26.9 7.7 89 116-214 26-118 (356)
305 2lpm_A Two-component response 24.3 1.5E+02 0.0052 22.8 5.8 67 121-202 12-80 (123)
306 2q9u_A A-type flavoprotein; fl 23.8 4.5E+02 0.016 24.6 12.2 88 116-214 256-351 (414)
307 3zy2_A Putative GDP-fucose pro 23.8 3.7E+02 0.013 25.1 9.1 90 95-201 259-348 (362)
308 3f6c_A Positive transcription 23.6 2.3E+02 0.0078 21.0 9.0 68 133-214 14-83 (134)
309 3gyb_A Transcriptional regulat 23.6 1E+02 0.0035 27.0 5.4 64 117-189 6-71 (280)
310 3gt7_A Sensor protein; structu 23.5 2.6E+02 0.0088 21.6 9.7 68 133-213 20-89 (154)
311 1j3m_A The conserved hypotheti 23.5 2.5E+02 0.0087 21.6 8.0 72 129-213 12-85 (129)
312 1uuy_A CNX1, molybdopterin bio 23.5 1.1E+02 0.0039 25.0 5.2 36 151-186 44-80 (167)
313 2csu_A 457AA long hypothetical 23.5 3.8E+02 0.013 26.0 9.8 147 28-201 72-227 (457)
314 3gl9_A Response regulator; bet 23.4 2.2E+02 0.0077 20.9 8.8 49 165-213 34-84 (122)
315 3i6v_A Periplasmic His/Glu/Gln 23.3 53 0.0018 28.1 3.3 41 402-457 102-142 (232)
316 1xw8_A UPF0271 protein YBGL; N 23.2 1.5E+02 0.005 26.3 5.9 84 62-147 143-242 (252)
317 3kht_A Response regulator; PSI 22.7 2.5E+02 0.0086 21.2 8.7 71 133-214 18-90 (144)
318 2pbq_A Molybdenum cofactor bio 22.6 2.4E+02 0.008 23.4 7.1 61 118-185 7-76 (178)
319 2qip_A Protein of unknown func 22.6 70 0.0024 26.2 3.7 22 163-184 118-140 (165)
320 3ksx_A Nitrate transport prote 22.1 1.3E+02 0.0045 27.2 6.0 29 396-430 120-148 (324)
321 3t6k_A Response regulator rece 21.8 2.6E+02 0.0089 21.0 9.7 49 165-213 36-86 (136)
322 3bvp_A INT, TP901-1 integrase; 21.7 90 0.0031 24.6 4.1 80 101-183 24-108 (138)
323 3kto_A Response regulator rece 21.5 2.3E+02 0.008 21.2 6.6 66 133-213 19-88 (136)
324 1ta9_A Glycerol dehydrogenase; 21.5 1.1E+02 0.0036 30.0 5.3 95 106-214 81-179 (450)
325 3lua_A Response regulator rece 21.4 2.6E+02 0.009 21.0 7.1 50 165-214 37-90 (140)
326 3rqi_A Response regulator prot 21.4 3.2E+02 0.011 22.0 7.9 37 165-201 39-77 (184)
327 3mhy_A PII-like protein PZ; PI 20.8 2.8E+02 0.0094 21.0 7.8 78 133-213 13-96 (112)
328 3hv2_A Response regulator/HD d 20.7 2.9E+02 0.0099 21.2 9.7 66 133-213 27-94 (153)
329 3uif_A Sulfonate ABC transport 20.5 2E+02 0.007 26.3 7.0 29 396-430 108-136 (348)
330 3dmy_A Protein FDRA; predicted 20.4 6.1E+02 0.021 24.8 12.2 142 29-200 45-197 (480)
331 4a29_A Engineered retro-aldol 20.3 1.6E+02 0.0054 26.3 5.6 85 107-204 69-156 (258)
332 3eod_A Protein HNR; response r 20.2 2.7E+02 0.0091 20.5 8.0 37 165-201 39-77 (130)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=4.7e-56 Score=485.09 Aligned_cols=427 Identities=21% Similarity=0.393 Sum_probs=333.9
Q ss_pred cccccccccccccceEEEEeeeeeCC-CHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDP-NPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
+||||+++ ++|+++..|+.+ ++.+++..+|+ +.+++|.|||| |.+|. ++.+++++++.++||+|++..
T Consensus 24 veeiN~~~------~~l~~~~~D~~~~~~~~a~~~~~~-l~~~~V~aiiG--~~~S~-~~~a~~~i~~~~~iP~is~~~- 92 (823)
T 3kg2_A 24 MVQFSTSE------FRLTPHIDNLEVANSFAVTNAFCS-QFSRGVYAIFG--FYDKK-SVNTITSFCGTLHVSFITPSF- 92 (823)
T ss_dssp HHHTCCSS------CEEEEEEEEECTTCHHHHHHHHHH-HHHTTCSEEEE--CCCTT-THHHHHHHHHHTTCEEEECSC-
T ss_pred HHHHhcCC------eEEEEEEEEcCCCChHHHHHHHHH-HHhcCcEEEEc--CCChh-HHHHHHHHhhcCCCceeeccc-
Confidence 68999443 889999999998 77676666665 55789999999 99996 999999999999999999833
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE 160 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~ 160 (458)
+.. ..++|+||+.|+ ++.++++++++|||+||++|| |++||....+.+.+.+++.| +|+.....++
T Consensus 93 -~~~---~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~~~~g------~~v~~~~~~~ 158 (823)
T 3kg2_A 93 -PTD---GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKK------WQVTAINVGN 158 (823)
T ss_dssp -CCS---SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHHHHTT------CEEEEEECSS
T ss_pred -CCC---CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHhhccC------CceEEEEeec
Confidence 322 346899999998 889999999999999999999 77899999999999999988 4555555555
Q ss_pred CC----cccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccCC---C---CCeeEEEEe
Q psy17441 161 PG----LTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKN---V---PVGIIGLKL 230 (458)
Q Consensus 161 ~~----~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~~---~---~~g~~g~~~ 230 (458)
.+ ..|+..++++|+++++|+|+++++..++..++++|+++|+++++|+||.++.+....+ + ..|++++++
T Consensus 159 ~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (823)
T 3kg2_A 159 INNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGAEVSGFQI 238 (823)
T ss_dssp CCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCCSSSSSSBCEEEEEES
T ss_pred CCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccchHHhhcCCCCceEeee
Confidence 44 7889999999999999999999999999999999999999998999999996543322 2 345888887
Q ss_pred cCCC----------------------------chhHHHHHHHHHHHHHHHHHhhcC------------------------
Q psy17441 231 VNAT----------------------------NEDAHIRDSIYVLTSALKEMNQSA------------------------ 258 (458)
Q Consensus 231 ~~~~----------------------------~~~~~~yDAv~~la~Al~~~~~~~------------------------ 258 (458)
+.++ .+++++||||+++|+|++++..++
T Consensus 239 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~ 318 (823)
T 3kg2_A 239 VDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGV 318 (823)
T ss_dssp SCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCCCTTCSSCCCCTHHH
T ss_pred ecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccCCCCCcccchH
Confidence 6653 137899999999999999865310
Q ss_pred ---------c---ccC-----------------------------------------------------------CCc-c
Q psy17441 259 ---------V---ITE-----------------------------------------------------------APQ-D 266 (458)
Q Consensus 259 ---------~---~~~-----------------------------------------------------------~~~-~ 266 (458)
+ .++ +|. .
T Consensus 319 ~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~~~~~~~~~~~~~~~l~v~~~~~~P~~~ 398 (823)
T 3kg2_A 319 EIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTEDDTSGLEQKTVVVTTILESPYVM 398 (823)
T ss_dssp HHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEEEECCCCCSSCCCCCEEEEECCCTTTSE
T ss_pred HHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCCceeccCcccccCCCEEEEEEecCCCcEE
Confidence 0 000 000 0
Q ss_pred c-------CCCC-------------------------cc-------------cccC------------------------
Q psy17441 267 C-------DNSG-------------------------SI-------------WETG------------------------ 277 (458)
Q Consensus 267 c-------~~~~-------------------------~~-------------W~~g------------------------ 277 (458)
. .+++ .. |++.
T Consensus 399 ~~~~~~~~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~ 478 (823)
T 3kg2_A 399 MKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREE 478 (823)
T ss_dssp ECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHT
T ss_pred EecCccccCCCCceEEEHHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhhee
Confidence 0 0000 01 3332
Q ss_pred ------------------Ccc-CCCCcceeeecCChhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC------Ccc
Q psy17441 278 ------------------KPS-RSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFRLSNSD------NTE 332 (458)
Q Consensus 278 ------------------~~~-~~~~~~~fl~pf~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 332 (458)
+|. ..+++|.|++||++++|++++++++++++++|+++|++|++|+..+... ...
T Consensus 479 ~~dfs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~ 558 (823)
T 3kg2_A 479 VIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSES 558 (823)
T ss_dssp TEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------
T ss_pred eEEeccchhhCCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccc
Confidence 333 3467999999999999999999999999999999999999987553211 123
Q ss_pred ccccccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcccceeEEeeeccCCCCCCChhhhhhcCCCC
Q psy17441 333 EDALNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLTGINDARLRNTME 412 (458)
Q Consensus 333 ~~~~~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yta~l~s~lt~~~~~~~i~~~~dL~~~~~~~ 412 (458)
...+++.+++|++++++++|| .+..|++.++|++.++|||+++|++++|||+|+|+||++++.++|++++||+ .++
T Consensus 559 ~~~~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~---~~~ 634 (823)
T 3kg2_A 559 TNEFGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLS---KQT 634 (823)
T ss_dssp CHHHHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHH---HCC
T ss_pred cccccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHh---hCC
Confidence 456788999999999999999 6889999999999999999999999999999999999999999999999998 355
Q ss_pred ceEEEEeCCChHHHHHhhchh--hHHHHHHHHHcC----CCCHHHHHHHhh
Q psy17441 413 NLTCATVKGSAVDMYFRRQVE--LSNMYRTMEANN----YDTAEDAIADVK 457 (458)
Q Consensus 413 ~~~~g~~~~s~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~gi~~v~ 457 (458)
.+++|++.+++...||++++. |++||+.|+... +++.+||+++++
T Consensus 635 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (823)
T 3kg2_A 635 EIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVR 685 (823)
T ss_dssp SSEEECBSSSHHHHHHHHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHH
T ss_pred CeeEEEEeCCcHHHHHHhccchHHHHHHHHHHhcCCccccCCHHHHHHHHh
Confidence 799999999999999998753 899999998764 579999999995
No 2
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=9.1e-39 Score=318.20 Aligned_cols=273 Identities=44% Similarity=0.771 Sum_probs=228.6
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeC---CCCCCCchHHHHHhhcccCCcEEeee
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSH---PLTGDLSPAAVSYTSGFYHIPVIGIS 78 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~---~~~s~~~~~~~~~i~~~~~iP~Is~~ 78 (458)
+|+||+++ +. ++++|.++..|+.+++.+++..+|++|++++|.||||+. |.||. ++.+++++++.+++|+|+++
T Consensus 25 v~~iN~~~-~~-~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~~~~~s~-~~~a~~~~~~~~~iP~is~~ 101 (384)
T 3qek_A 25 VNQANKRH-FT-RKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPPAPTDHL-TPTPISYTAGFYRIPVIGLT 101 (384)
T ss_dssp HHHHHHHS-CC-SSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC---------CCHHHHHHHHTTTCCEEESS
T ss_pred HHHHhccc-cC-CceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCCCCccch-hHHHHHHHHhcCCCCEEecc
Confidence 68999554 44 799999999999999999998999988888999999931 34664 78999999999999999999
Q ss_pred cCCCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcc-----------
Q psy17441 79 SRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDV----------- 147 (458)
Q Consensus 79 a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v----------- 147 (458)
++++.++++..||++||+.|++..++.++++++++|||+||++||+|++||++..+.|++.+++.|+.+
T Consensus 102 ~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~~~~v 181 (384)
T 3qek_A 102 TRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQL 181 (384)
T ss_dssp CCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHC--------------CCS
T ss_pred cCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHHHHHHHHHhccCcccccccccccee
Confidence 999999999889999999999999999999999999999999999999999999999999999988522
Q ss_pred eeeE----EEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC---C
Q psy17441 148 EIKV----QVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK---N 220 (458)
Q Consensus 148 ~~~~----~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~---~ 220 (458)
.+.. .......++.+..|+...+++|+++++|+|+++++..++..++++|+++|+++++++||.++.+.... .
T Consensus 182 ~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~ 261 (384)
T 3qek_A 182 SYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSAAMLDMTGAGYVWLVGEREISGSALRY 261 (384)
T ss_dssp CCCCCCCCEEEEEEEECTTCSCCHHHHHHHHTSSCCEEEEECCHHHHHHHHHHHHHTTCSSTTCEEECCSGGGSGGGGSS
T ss_pred eeccccCcccceecccCCchhhHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHcCCccCCeEEEEeccccccccccc
Confidence 1100 00122233456789999999999999999999999999999999999999998889999999986543 3
Q ss_pred CCCeeEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCcccCCCcccCCCCcccccC
Q psy17441 221 VPVGIIGLKLVNATNEDAHIRDSIYVLTSALKEMNQSAVITEAPQDCDNSGSIWETG 277 (458)
Q Consensus 221 ~~~g~~g~~~~~~~~~~~~~yDAv~~la~Al~~~~~~~~~~~~~~~c~~~~~~W~~g 277 (458)
..+|++|++++.++..++++||||+++|+|+++++++..+..++..|.+...+|+.|
T Consensus 262 ~~~g~lg~~~~~~~~~~~~~YdAV~~~a~Al~~~~~~~~~~~~~~~c~~~~~~~~~~ 318 (384)
T 3qek_A 262 APDGIIGLQLINGKNESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTG 318 (384)
T ss_dssp CCTTCEEEEETTTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCSCCTTCCCCCTTH
T ss_pred cCCccEEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCCccccH
Confidence 489999999999998999999999999999999998877777778897654456544
No 3
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=301.25 Aligned_cols=243 Identities=20% Similarity=0.306 Sum_probs=210.7
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhhc------------------------CCeEEEEEeCCCCCC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLIS------------------------ERVYAVIVSHPLTGD 57 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~------------------------~~V~aiIG~~~~~s~ 57 (458)
+||||+++++| ||++|+++..|+.+++..++..+.+.+.. ++|+|||| |.+|.
T Consensus 51 ieeIN~~~~lL-pg~~L~~~i~D~~~~~~~a~~~~~~ll~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG--~~~S~ 127 (479)
T 3sm9_A 51 IDEINKDDYLL-PGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIG--GSYSS 127 (479)
T ss_dssp HHHHHHCSSSS-TTCCEEEEEEECTTCHHHHHHHHHHHHHTCC-----------------------CEEEEEC--CSSHH
T ss_pred HHHHhCCCccC-CCCeEeEEEEecCCChHHHHHHHHHHHhCCCccCCCCCCccCCCCccccccCCCceEEEEC--CCCcH
Confidence 79999888777 99999999999999987766665544322 47999999 88886
Q ss_pred CchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHH
Q psy17441 58 LSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQ 137 (458)
Q Consensus 58 ~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~ 137 (458)
.+.+++++++.+++|+|+++++++.|+++..||++||+.|++..++.++++++++|||+||++|++||+||+...+.|+
T Consensus 128 -~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~ 206 (479)
T 3sm9_A 128 -VSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFE 206 (479)
T ss_dssp -HHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHH
Confidence 9999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCcceeeEEEEEEEEeCC--CcccHHHHH-HHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeecc
Q psy17441 138 TTSQNQEDDVEIKVQVEAVIEFEP--GLTTFKDQL-YEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQ 214 (458)
Q Consensus 138 ~~l~~~gi~v~~~~~v~~~~~~~~--~~~d~~~~l-~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~ 214 (458)
+.+++.| +|++....++. +..|+...+ +.|+++++|+|+++++..++..++++++++|++ ++||.++.
T Consensus 207 ~~~~~~G------i~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~ 277 (479)
T 3sm9_A 207 QEARLRN------ISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAASRANAS---FTWVASDG 277 (479)
T ss_dssp HHHHTTT------CEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTCC---CEEEECTT
T ss_pred HHHHHCC------ceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEEEcChHHHHHHHHHHHHhCCE---EEEEEech
Confidence 9999988 45566666654 356888888 668889999999999999999999999999997 89999999
Q ss_pred cccc-------CCCCCeeEEEEecCCC-----------------------------------------------------
Q psy17441 215 ALTA-------KNVPVGIIGLKLVNAT----------------------------------------------------- 234 (458)
Q Consensus 215 ~~~~-------~~~~~g~~g~~~~~~~----------------------------------------------------- 234 (458)
|... ....+|++++.++..+
T Consensus 278 w~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~ 357 (479)
T 3sm9_A 278 WGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSS 357 (479)
T ss_dssp TTTCHHHHTTCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTT
T ss_pred hhcCccccccccccCceEEEEEeccCCCcchhhHhhccCcCcCCCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccC
Confidence 8653 2357899999876543
Q ss_pred -----chhHHHHHHHHHHHHHHHHHhhc
Q psy17441 235 -----NEDAHIRDSIYVLTSALKEMNQS 257 (458)
Q Consensus 235 -----~~~~~~yDAv~~la~Al~~~~~~ 257 (458)
.....+||||+++|+||++|+.+
T Consensus 358 ~~~~~~~~~~vy~AVyavA~ALh~m~~~ 385 (479)
T 3sm9_A 358 NYEQESKIMFVVNAVYAMAHALHKMQRT 385 (479)
T ss_dssp TCCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHh
Confidence 01257999999999999999874
No 4
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=9.6e-35 Score=286.68 Aligned_cols=254 Identities=21% Similarity=0.361 Sum_probs=206.0
Q ss_pred cceEEEEe-eeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHH--HHHhhcccCCcEEeeecCCC-CCCCCcc
Q psy17441 14 KGVTFSAT-GIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAA--VSYTSGFYHIPVIGISSRDS-AFSDKNI 89 (458)
Q Consensus 14 ~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~--~~~i~~~~~iP~Is~~a~~~-~ls~~~~ 89 (458)
+..+|..+ ...+.+|+.+.+..+|+.+..++|.|||| ||.++. .+.+ ++.+++.++||+||++++++ .|+++.+
T Consensus 32 ~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIg-g~~s~~-~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~ 109 (364)
T 3qel_B 32 LSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVF-ADDTDQ-EAIAQILDFISAQTLTPILGIHGGSSMIMADKDE 109 (364)
T ss_dssp CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEE-EESSCC-THHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCT
T ss_pred CCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEe-cCCCCc-hHHHHHHHHHHhccCCCEEEeecCCCCcCCCccc
Confidence 45667666 55578899999999999887788999997 255443 4555 99999999999999999998 8999999
Q ss_pred ccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhcc--C--CcceeeEEEEEEEEeCCCccc
Q psy17441 90 HVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQ--E--DDVEIKVQVEAVIEFEPGLTT 165 (458)
Q Consensus 90 ~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~--g--i~v~~~~~v~~~~~~~~~~~d 165 (458)
||+|||+.|++..|+.++++++++|||+||++||+|+ .| .+.|.+.+++. | +|+. +........+..+
T Consensus 110 ~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~-~g---~~~~~~~l~~~~~~~~ici~----~~~~i~~~~~~~~ 181 (364)
T 3qel_B 110 SSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF-PG---YQDFVNKIRSTIENSFVGWE----LEEVLLLDMSLDD 181 (364)
T ss_dssp TCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC-TT---HHHHHHHHHHHHHTCSSCCE----EEEEEEECTTSCS
T ss_pred CceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC-cc---HHHHHHHHHHHhhccccceE----EEEEEccCCCccc
Confidence 9999999999999999999999999999999999985 44 34455555443 3 3542 2223334445567
Q ss_pred HHHHH-HHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC-----CCCCeeEEEEecCCC-chhH
Q psy17441 166 FKDQL-YEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK-----NVPVGIIGLKLVNAT-NEDA 238 (458)
Q Consensus 166 ~~~~l-~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~-----~~~~g~~g~~~~~~~-~~~~ 238 (458)
++..+ ++|+++++++||++|+.+++..++++|.++||++++|+||.++.+.... .+.+|++|+++..+. ...+
T Consensus 182 ~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI~t~~~~~~~~~~~~~~~~g~~~~~~~~W~~~~~~ 261 (364)
T 3qel_B 182 GDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPSEFPTGLISVSYDEWDYGLPA 261 (364)
T ss_dssp SSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEECHHHHCSTTCCCTTSCTTCEECCBCTTTSCHHH
T ss_pred HHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEecccccCcccccccCCCceEEEeeccchhhHHH
Confidence 88888 6899999999999999999999999999999999999999999874332 367999999988743 5788
Q ss_pred HHHHHHHHHHHHHHHHhhc-CcccCCCcccCCCC-cccccC
Q psy17441 239 HIRDSIYVLTSALKEMNQS-AVITEAPQDCDNSG-SIWETG 277 (458)
Q Consensus 239 ~~yDAv~~la~Al~~~~~~-~~~~~~~~~c~~~~-~~W~~g 277 (458)
++||||+++|+|++++.++ ..++.++.+|.+.. .+|..|
T Consensus 262 ~~yDaV~~~A~A~~~~~~~~~~i~~~~~~C~~~~~~~~~~G 302 (364)
T 3qel_B 262 RVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQS 302 (364)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCCCCCSCSTTTTTGGGGCC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccCCH
Confidence 9999999999999999876 35666778998764 357777
No 5
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=5.3e-34 Score=297.24 Aligned_cols=243 Identities=20% Similarity=0.311 Sum_probs=208.0
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhh------------------------cCCeEEEEEeCCCCCC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLI------------------------SERVYAVIVSHPLTGD 57 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~------------------------~~~V~aiIG~~~~~s~ 57 (458)
+||||+++++| ||++|+++..|+.+++..++..+.+.+. +++|.|||| |.+|.
T Consensus 52 ieeIN~~~~ll-pg~~L~~~i~D~~~~~~~a~~~a~~~l~~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG--~~~S~ 128 (555)
T 2e4u_A 52 IDEINKDNYLL-PGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIG--GSYSS 128 (555)
T ss_dssp HHHHHHCTTSS-TTCCEEEEEEECTTCHHHHHHHHHHHHHTTC--------------------CCCCEEEEEE--CSSHH
T ss_pred HHHHhCCCCCC-CCCeEEEEEEECCCChHHHHHHHHHHHhCcCcccCCCCcccCCCccccccccCCceEEEEC--CCCcH
Confidence 78999777777 9999999999999888776665444331 468999999 88886
Q ss_pred CchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHH
Q psy17441 58 LSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQ 137 (458)
Q Consensus 58 ~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~ 137 (458)
++.+++++++.+++|+|+++++++.|+++..||+|||+.|++..|+.++++++++|||+||++|++|++||....+.|+
T Consensus 129 -~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~ 207 (555)
T 2e4u_A 129 -VSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFE 207 (555)
T ss_dssp -HHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHH
T ss_pred -HHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHH
Confidence 8999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCcceeeEEEEEEEEeCC--CcccHHHHHHHHHh-ccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeecc
Q psy17441 138 TTSQNQEDDVEIKVQVEAVIEFEP--GLTTFKDQLYEMKN-AQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQ 214 (458)
Q Consensus 138 ~~l~~~gi~v~~~~~v~~~~~~~~--~~~d~~~~l~~ik~-~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~ 214 (458)
+.+++.| +|++....++. +..++...+++|++ +++|+|++++...++..++++++++|+ +++||.++.
T Consensus 208 ~~~~~~g------i~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~ 278 (555)
T 2e4u_A 208 QEARLRN------ICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAANRVNA---SFTWVASDG 278 (555)
T ss_dssp HHHHTTT------CEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTC---CCEEEECTT
T ss_pred HHHHHCC------ccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEEEEcCHHHHHHHHHHHHHhcC---CeEEEEecc
Confidence 9999988 45566666654 56789999999975 799999999999999999999999998 399999998
Q ss_pred ccccCC-------CCCeeEEEEecC--------------C----------------------------------------
Q psy17441 215 ALTAKN-------VPVGIIGLKLVN--------------A---------------------------------------- 233 (458)
Q Consensus 215 ~~~~~~-------~~~g~~g~~~~~--------------~---------------------------------------- 233 (458)
|..... ..+|++++.++. +
T Consensus 279 ~~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~ 358 (555)
T 2e4u_A 279 WGAQESIVKGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSS 358 (555)
T ss_dssp TTTCGGGTTTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTT
T ss_pred ccccchhhccchhhcceEEEEEeccCCCCcHHHHHhhCCcccCCCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccc
Confidence 865421 257888887631 1
Q ss_pred ----CchhHHHHHHHHHHHHHHHHHhhc
Q psy17441 234 ----TNEDAHIRDSIYVLTSALKEMNQS 257 (458)
Q Consensus 234 ----~~~~~~~yDAv~~la~Al~~~~~~ 257 (458)
..+++.+||||+++|+||+++..+
T Consensus 359 ~~~~~~~~~~~YdAVya~A~AL~~~~~~ 386 (555)
T 2e4u_A 359 NYEQESKIMFVVNAVYAMAHALHKMQRT 386 (555)
T ss_dssp TCCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHHHHHhh
Confidence 013568999999999999999753
No 6
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=3.1e-34 Score=294.56 Aligned_cols=221 Identities=19% Similarity=0.267 Sum_probs=190.7
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHh----------------------------hcCCeEEEEEeCC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFL----------------------------ISERVYAVIVSHP 53 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l----------------------------~~~~V~aiIG~~~ 53 (458)
|||||+++++| ||++|+|+..|+.+++..++..+.+.+ .+++|.|||| |
T Consensus 59 ieeIN~~~~lL-pn~tLg~~i~D~~~~~~~a~~~a~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG--~ 135 (496)
T 3ks9_A 59 LDKINADPVLL-PNITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIG--P 135 (496)
T ss_dssp HHHHHTCSSSS-TTCCEEEEEEECTTCHHHHHHHHHHHHSTTC--------------------------CCEEEEEC--C
T ss_pred HHHHhCCCCCC-CCceEeEEEEEcCCCcHHHHHHHHHHHHhhhccccccCCCCccccCcccccccccCCCceEEEEC--C
Confidence 79999888877 999999999999888876666544433 2578999999 8
Q ss_pred CCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHH
Q psy17441 54 LTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALL 133 (458)
Q Consensus 54 ~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~ 133 (458)
.+|. .+.+++++++.+++|+|+++++++.++++..||++||+.|++..|+.++++++++|||+||++|++||+||+...
T Consensus 136 ~~S~-~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~ 214 (496)
T 3ks9_A 136 GSSS-VAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGM 214 (496)
T ss_dssp SSHH-HHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CccH-HHHHHHHHHhhcceeEECCCcCCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHH
Confidence 8886 999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCcceeeEEEEEEEEeC--CCcccHHHHHHHHHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceEE
Q psy17441 134 GRFQTTSQNQEDDVEIKVQVEAVIEFE--PGLTTFKDQLYEMKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYVW 209 (458)
Q Consensus 134 ~~l~~~l~~~gi~v~~~~~v~~~~~~~--~~~~d~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~w 209 (458)
+.++++++++| +|++....++ .+..|+...+++|+++ ++++|++++...++..++++++++|+++ .+.|
T Consensus 215 ~~~~~~~~~~G------i~v~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k~~~ 287 (496)
T 3ks9_A 215 DAFKELAAQEG------LSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSL 287 (496)
T ss_dssp HHHHHHHHHTT------CEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-CCEE
T ss_pred HHHHHHHHHcC------ceEEEEEEECCCCCHHHHHHHHHHHHhccCceEEEEEecChHHHHHHHHHHHHhCCCC-cEEE
Confidence 99999999988 4555555554 4567899999999984 8999999999999999999999999986 2589
Q ss_pred EeeccccccC-------CCCCeeEEEEecCC
Q psy17441 210 IVTEQALTAK-------NVPVGIIGLKLVNA 233 (458)
Q Consensus 210 i~t~~~~~~~-------~~~~g~~g~~~~~~ 233 (458)
|.++.|.... ....|.+++.++..
T Consensus 288 i~s~~w~~~~~~~~~~~~~~~G~l~~~~~~~ 318 (496)
T 3ks9_A 288 IGSDGWADRDEVIEGYEVEANGGITIKLQSP 318 (496)
T ss_dssp EECTTTTTCHHHHTTCHHHHTTCEEEEECCC
T ss_pred EEechhccccccccccccccCceEEEeccCC
Confidence 9999886432 12688898887654
No 7
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=1.1e-34 Score=296.99 Aligned_cols=221 Identities=19% Similarity=0.287 Sum_probs=165.0
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhhc----------------------CCeEEEEEeCCCCCCCc
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLIS----------------------ERVYAVIVSHPLTGDLS 59 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~----------------------~~V~aiIG~~~~~s~~~ 59 (458)
+||||+++++| ||++|+++..|+.+++..+...+.+.+.. ++|.|||| +.+|. .
T Consensus 54 ieeIN~~~~lL-pn~~L~~~i~D~~~~~~~a~~~a~~ll~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG--~~~S~-~ 129 (481)
T 3mq4_A 54 LDQINSDPNLL-PNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIG--ASGSS-V 129 (481)
T ss_dssp HHHHTTCSSSS-SSCCEEEEEEECTTCHHHHHHHHGGGGGGGSCCCC--------------CCCCEEEEEC--CSSHH-H
T ss_pred HHHHhCCCCcC-CCceEEEEEEeCCCChHHHHHHHHHHHhCCcccCCCCcccCCCCCcccccCCCcEEEEc--CCCcH-H
Confidence 78999888877 99999999999988887666654443321 68999999 88886 8
Q ss_pred hHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHh
Q psy17441 60 PAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTT 139 (458)
Q Consensus 60 ~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~ 139 (458)
+.+++++++.+++|+|+++++++.|+++..||++||+.|++..++.++++++++|||+||++|++||+||+...+.+++.
T Consensus 130 s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~ 209 (481)
T 3mq4_A 130 SIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQI 209 (481)
T ss_dssp HHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchHHHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc-cCCcceeeEEEEEEEEeCCC--cc--cHHHHHHHHH-hccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeec
Q psy17441 140 SQN-QEDDVEIKVQVEAVIEFEPG--LT--TFKDQLYEMK-NAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTE 213 (458)
Q Consensus 140 l~~-~gi~v~~~~~v~~~~~~~~~--~~--d~~~~l~~ik-~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~ 213 (458)
+++ .| +|++....++.+ .. |+...+++++ ++++|+|++++...++..++++++++|+++ +++||.++
T Consensus 210 ~~~~~G------i~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~ 282 (481)
T 3mq4_A 210 SKEAGG------LSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVG-HFLWVGSD 282 (481)
T ss_dssp C---CC------CEECCCCCCCCC------CCSHHHHCCCCC----CEEECCCSSHHHHHC-----------CCCEEEC-
T ss_pred HHHhCC------EEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEEEEEEEChHHHHHHHHHHHHccCCc-ceEEEEEC
Confidence 885 56 555554444432 23 7888999988 589999999999999999999999999985 37999999
Q ss_pred cccccC-------CCCCeeEEEEecCC
Q psy17441 214 QALTAK-------NVPVGIIGLKLVNA 233 (458)
Q Consensus 214 ~~~~~~-------~~~~g~~g~~~~~~ 233 (458)
.|.... ...+|.+++.++..
T Consensus 283 ~w~~~~~~~~~~~~~~~G~l~~~~~~~ 309 (481)
T 3mq4_A 283 SWGSKINPLHQHEDIAEGAITIQPKRA 309 (481)
T ss_dssp ----------------CCCEEEEECCC
T ss_pred ccccccccccccchhhccEEEEecCcC
Confidence 986432 24789999887643
No 8
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=9.5e-33 Score=275.24 Aligned_cols=257 Identities=18% Similarity=0.265 Sum_probs=205.7
Q ss_pred cccccccccccccceEEEEeeeeeCC-CHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDP-NPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
+||||++++++++|++|+++..|+.+ ++.+++..+|+. ++++|.|||| |.+|. ++.+++++++.++||+|+++.
T Consensus 27 v~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~l-i~~~V~aiiG--~~~S~-~~~a~~~i~~~~~iP~Is~s~- 101 (389)
T 3o21_A 27 VQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQ-FSRGVYAIFG--FYDQM-SMNTLTSFCGALHTSFVTPSF- 101 (389)
T ss_dssp HHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHH-HTTTCSCEEE--CCCTT-THHHHHHHHHHHTCCEEECSC-
T ss_pred HHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHH-HhcCcEEEEe--CCChh-HHHHHHHHhccCCCceeecCC-
Confidence 78999777762499999999999988 888877777764 4779999999 99996 999999999999999998864
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE 160 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~ 160 (458)
+.+ ++. +|.||+.|+ |+.++++++++|||+||++|| |++||....+.+.+.+++.| +|+.....++
T Consensus 102 -~~~-~~~--~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~~~g------~~v~~~~~~~ 167 (389)
T 3o21_A 102 -PTD-ADV--QFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIMEAAVQNN------WQVTARSVGN 167 (389)
T ss_dssp -CCS-SCC--SSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHHHHHHTT------CEEEEEECTT
T ss_pred -CCc-cCC--ceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHHHhhcCC------CeEEEEEecC
Confidence 434 333 556777776 899999999999999999999 77899999999999999988 4445444443
Q ss_pred C-CcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccCCC------CCeeEEEEecCC
Q psy17441 161 P-GLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKNV------PVGIIGLKLVNA 233 (458)
Q Consensus 161 ~-~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~~~------~~g~~g~~~~~~ 233 (458)
. +..|+..+|++|+++++|+|++.++..++..++++++++|+++++|+||+++.+..+.++ ..|+++++.+.+
T Consensus 168 ~~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (389)
T 3o21_A 168 IKDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILLERVMHGGANITGFQIVNN 247 (389)
T ss_dssp CCCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCCCHHHHHTTCEEEEEESCCT
T ss_pred CCCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCcccccHHHHhcCCcceEEEEEecC
Confidence 3 445899999999999999999999999999999999999999989999999876554432 578888876553
Q ss_pred C----------------------------chhHHHHHHHHHHHHHHHHHhhcC-cc--cCCCcccCCC-CcccccC
Q psy17441 234 T----------------------------NEDAHIRDSIYVLTSALKEMNQSA-VI--TEAPQDCDNS-GSIWETG 277 (458)
Q Consensus 234 ~----------------------------~~~~~~yDAv~~la~Al~~~~~~~-~~--~~~~~~c~~~-~~~W~~g 277 (458)
+ .+++++||||+++|+|++++..++ .+ .+.+.+|.+. ..+|+.|
T Consensus 248 ~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (389)
T 3o21_A 248 ENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQG 323 (389)
T ss_dssp TCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CCSCSSSCCCTTTT
T ss_pred CChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCcCCCCCCCCCCCc
Confidence 2 247899999999999999998653 22 1334577532 2346555
No 9
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=4.1e-33 Score=281.77 Aligned_cols=242 Identities=14% Similarity=0.173 Sum_probs=211.7
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhhc-CCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLIS-ERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
+|+||++ |++ +|++|+++..|+.+++.+++..+++.+.+ ++|.+||| |.+|. .+.+++++++.++||+|+++++
T Consensus 44 v~~iN~~-g~l-~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~aviG--~~~S~-~~~a~~~~~~~~~ip~is~~~~ 118 (433)
T 4f11_A 44 IEQIRNE-SLL-RPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFG--GVCPS-VTSIIAESLQGWNLVQLSFAAT 118 (433)
T ss_dssp HHHHHHT-TTT-TTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSEEEE--CCSHH-HHHHHHHTHHHHTCEEEESSCC
T ss_pred HHHHhcc-CCC-CCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEEC--CCcch-HHHHHHHHHHhcCceEEEcccC
Confidence 6899966 777 89999999999999998877776665544 49999999 99986 9999999999999999999999
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE 160 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~ 160 (458)
++.++++..||++||+.|++..++.+++++++++||++|++||++++||....+.+++.+++.| +++.....++
T Consensus 119 ~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~~~~~~~~~~g------~~v~~~~~~~ 192 (433)
T 4f11_A 119 TPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGED------IEISDTESFS 192 (433)
T ss_dssp CGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHSSSSS------CEEEEEEEES
T ss_pred CccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhHHHHHHHHHHHHHcC------ceEEEEeccC
Confidence 9999998889999999999999999999999999999999999999999999999999999988 4555555555
Q ss_pred CCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeecc----ccc-------cC--------CC
Q psy17441 161 PGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQ----ALT-------AK--------NV 221 (458)
Q Consensus 161 ~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~----~~~-------~~--------~~ 221 (458)
.|+...+++|+++++|+|+++++..++..++++++++|+++++++||.++. |.. .. ..
T Consensus 193 ---~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (433)
T 4f11_A 193 ---NDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAA 269 (433)
T ss_dssp ---SCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEESCSCTTTTTCC------CCSCHHHHHHH
T ss_pred ---cCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEcCcchHhHhcccccCCCCCCCCHHHHHHH
Confidence 388999999999999999999999999999999999999988899999998 531 00 23
Q ss_pred CCeeEEEEecCCC-----------------------------chhHHHHHHHHHHHHHHHHHhhc
Q psy17441 222 PVGIIGLKLVNAT-----------------------------NEDAHIRDSIYVLTSALKEMNQS 257 (458)
Q Consensus 222 ~~g~~g~~~~~~~-----------------------------~~~~~~yDAv~~la~Al~~~~~~ 257 (458)
.+|++++.++.+. .+++++||||+++|+||+++..+
T Consensus 270 ~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~~~~~~~a~~~YDAv~~la~Al~~a~~~ 334 (433)
T 4f11_A 270 MEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGVGPSKFHGYAYDGIWVIAKTLQRAMET 334 (433)
T ss_dssp HTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTTSCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCCCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 7899999875431 24678999999999999998764
No 10
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=4.2e-33 Score=282.38 Aligned_cols=244 Identities=16% Similarity=0.212 Sum_probs=201.3
Q ss_pred ccccccccc----ccccceEEEEeeeeeCCCHHHHHHHHHHHhh---cCCeEEEEEeCCCCCCCchHHHHHhhcccCCcE
Q psy17441 2 FQHINFDIQ----YVNKGVTFSATGIQMDPNPILTALSVCKFLI---SERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPV 74 (458)
Q Consensus 2 v~eIN~~~~----~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~ 74 (458)
+|+||++++ ++ +|++|+++..|+.+++. ++..+.+.+. +++|.|||| |.||. ++.+++++++.+++|+
T Consensus 37 v~eiN~~~~~~~~ll-~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~v~aiiG--~~~S~-~~~~v~~~~~~~~ip~ 111 (441)
T 1jdp_A 37 LRSVEGNGTGRRLLP-PGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAKPDLILG--PVCEY-AAAPVARLASHWDLPM 111 (441)
T ss_dssp HHHHCC-----CCSC-TTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCCCSEEEC--CCSHH-HHHHHHHHHHHHTCCE
T ss_pred HHHHHhCCCcccccC-CCcEEEEEEecCCCchh-HHHHHHHHHHhhccCCceEEEC--CCchh-hHHHHHHHHhhcCCcE
Confidence 689997776 56 99999999999988875 4444444332 349999999 99986 8999999999999999
Q ss_pred EeeecCCCCCCCCc-cccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhH---HHHHHHHhhhccCCcceee
Q psy17441 75 IGISSRDSAFSDKN-IHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRA---LLGRFQTTSQNQEDDVEIK 150 (458)
Q Consensus 75 Is~~a~~~~ls~~~-~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~---~~~~l~~~l~~~gi~v~~~ 150 (458)
|+++++++.++++. .|||+||+.|++..++.++++++++|||+||++|++|++||+. ..+.+++.+++.|+
T Consensus 112 is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~----- 186 (441)
T 1jdp_A 112 LSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGL----- 186 (441)
T ss_dssp EESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECCSSSCHHHHHHHHHHHHHHHHTC-----
T ss_pred EcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcCCcccchHHHHHHHHHHHHhcCc-----
Confidence 99999999999887 7999999999999999999999999999999999999999999 99999999999884
Q ss_pred EEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeec----------cccccCC
Q psy17441 151 VQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTE----------QALTAKN 220 (458)
Q Consensus 151 ~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~----------~~~~~~~ 220 (458)
|+.....++.+..|+...+++|+ +++|+|+++++..++..++++++++|++++.++||.++ .|.....
T Consensus 187 -~v~~~~~~~~~~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~~~v~i~~~~~~~~~~~~~~w~~~~~ 264 (441)
T 1jdp_A 187 -HTSIYSFDETKDLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDK 264 (441)
T ss_dssp -EEEEEEECTTSCCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTTTCEEEEECSSCCCSTTTCTTCCSST
T ss_pred -EEEEEEecCCcccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccccCCCCccCCc
Confidence 44444555555678999999999 89999999999999999999999999998889999988 4432211
Q ss_pred -------CCCeeEEEEecCCC---------------------------chhHHHHHHHHHHHHHHHHHhhc
Q psy17441 221 -------VPVGIIGLKLVNAT---------------------------NEDAHIRDSIYVLTSALKEMNQS 257 (458)
Q Consensus 221 -------~~~g~~g~~~~~~~---------------------------~~~~~~yDAv~~la~Al~~~~~~ 257 (458)
...++.|+..+.+. .+++++||||+++|+||+++.++
T Consensus 265 ~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~YdAv~~~A~Al~~~~~~ 335 (441)
T 1jdp_A 265 HDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRA 335 (441)
T ss_dssp THHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 14556665543221 23578999999999999999754
No 11
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=7.5e-33 Score=276.33 Aligned_cols=259 Identities=20% Similarity=0.283 Sum_probs=204.4
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHH-HHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPIL-TALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~-~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
+||||++++++ +|++|+++..|+.+++.. ....+|+ +.+++|.|||| |.+|+.++.+++++++.++||+|+++++
T Consensus 29 v~eiN~~ggil-~g~~l~~~~~D~~~~~~~~~~~~~~~-l~~~~V~aiiG--~~~S~~~~~a~~~i~~~~~ip~is~~a~ 104 (393)
T 3om0_A 29 REQINGIIEVP-AKARVEVDIFELQRDSQYETTDTMCQ-ILPKGVVSVLG--PSSSPASASTVSHICGEKEIPHIKVGPE 104 (393)
T ss_dssp HHHHHHSCCSS-CCCEEEEEEEECCSSCHHHHHHHHHH-HGGGCCSCEEC--CSSCHHHHHHHHHHHHHHTCCEEECSCC
T ss_pred HHHHhcCcccc-cCcEEEEEEEecCCCchhHHHHHHHH-HHhcCcEEEEC--CCCchhHHHHHHHHHhccCCCeEeccCC
Confidence 68999777766 899999999999887644 4455555 55789999999 9888414469999999999999999886
Q ss_pred CCCCCCCccccce--eecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEE
Q psy17441 81 DSAFSDKNIHVSF--LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIE 158 (458)
Q Consensus 81 ~~~ls~~~~~p~~--~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~ 158 (458)
+ +++..||+| ||+.|++..|+.++++++++|||++|++||++++||....+.+ +.+.+.|+++ ... .
T Consensus 105 ~---~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~-~~~~~~g~~v------~~~-~ 173 (393)
T 3om0_A 105 E---TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV-RGFLISKETL------SVR-M 173 (393)
T ss_dssp C---CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH-HHHHHSSSCE------EEE-E
T ss_pred c---CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH-HhhhccCCeE------EEE-e
Confidence 4 345668998 9999999999999999999999999999999999998765555 4466677443 222 2
Q ss_pred eCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccCC------CCCeeEEEEecC
Q psy17441 159 FEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKN------VPVGIIGLKLVN 232 (458)
Q Consensus 159 ~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~~------~~~g~~g~~~~~ 232 (458)
+ ++..|++.++++|+++++|+|+++++..++..++++++++|+++++++|+.+++.....+ ...|++|+....
T Consensus 174 ~-~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~g~~~~~ 252 (393)
T 3om0_A 174 L-DDSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILHLDGIVEDSSNILGFSMFN 252 (393)
T ss_dssp C-C-CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGGCCCTTTCCSSCSEEEEECCC
T ss_pred c-CCCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccccccchhhhhccCCcEEEEEEec
Confidence 3 356799999999999999999999999999999999999999998899999987544322 256788887655
Q ss_pred CC----------------------------chhHHHHHHHHHHHHHHHHHhhcCcccCCCcccCCCCcccccC
Q psy17441 233 AT----------------------------NEDAHIRDSIYVLTSALKEMNQSAVITEAPQDCDNSGSIWETG 277 (458)
Q Consensus 233 ~~----------------------------~~~~~~yDAv~~la~Al~~~~~~~~~~~~~~~c~~~~~~W~~g 277 (458)
+. .+++++||||+++++|++++.....+..+..+|... ..|..|
T Consensus 253 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~~~c~~~-~~~~~g 324 (393)
T 3om0_A 253 TSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQEIGVKPLACTSA-NIWPHG 324 (393)
T ss_dssp TTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTSCCCCCCCCTTCC-CCCTTH
T ss_pred CCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhcccCcCCCcCCCCC-CcccCc
Confidence 43 146799999999999999997665555666788643 235544
No 12
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=5.6e-33 Score=280.83 Aligned_cols=244 Identities=11% Similarity=0.061 Sum_probs=205.6
Q ss_pred cccccccccccccceEEEEeeeee-----CCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEe
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQM-----DPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIG 76 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~-----~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is 76 (458)
+|+||++++++ +|++|+++..|+ .|++..++..+++.+.+++|.|||| |.||. ++.+++++++.+++|+|+
T Consensus 31 v~~iN~~ggil-~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~aviG--~~~S~-~~~av~~~~~~~~ip~is 106 (435)
T 1dp4_A 31 LARVKARPDLL-PGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVFLG--PGCVY-SAAPVGRFTAHWRVPLLT 106 (435)
T ss_dssp HHHHHTCTTSS-TTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSEEEC--CCSHH-HHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhCCCCC-CCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceEEEC--CCChH-HHHHHHHHHHhcCCcEEc
Confidence 68999777766 999999998888 4555566667677676789999999 98886 899999999999999999
Q ss_pred eecCCCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEE------EecCcchhHHHHHHHHhhhc-cCCccee
Q psy17441 77 ISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFI------HSSDTDGRALLGRFQTTSQN-QEDDVEI 149 (458)
Q Consensus 77 ~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii------~~~d~~g~~~~~~l~~~l~~-~gi~v~~ 149 (458)
++++++.++++..||++||+.|++..++.++++++++|||+||++| +++++|| ...+.+.+.+++ .|+
T Consensus 107 ~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~~~~~g-~~~~~~~~~~~~~~g~---- 181 (435)
T 1dp4_A 107 AGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCF-FIVEGLYMRVRERLNI---- 181 (435)
T ss_dssp SCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSSCCHHH-HHHHHHHHHHHHHHCC----
T ss_pred ccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCCcchHH-HHHHHHHHHHHhhcCe----
Confidence 9999999999888999999999999999999999999999999999 7788889 556778888877 774
Q ss_pred eEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC----------
Q psy17441 150 KVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK---------- 219 (458)
Q Consensus 150 ~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~---------- 219 (458)
|+......+.+..|+...+++|++ ++|+|++++...++..++++++++|+.+++++||.++.+....
T Consensus 182 --~v~~~~~~~~~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~g~l~~ 258 (435)
T 1dp4_A 182 --TVNHQEFVEGDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQK 258 (435)
T ss_dssp --EEEEEEECTTCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTTTCEEEEECTTCTTSCSSCTTSCBC
T ss_pred --EEEEEEEecCchhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCCCEEEEEEecccccccccccccccC
Confidence 444444444567889999999999 9999999999999999999999999988789999999875431
Q ss_pred -------------CCCCeeEEEEecCCC-----------------------------chhHHHHHHHHHHHHHHHHHhhc
Q psy17441 220 -------------NVPVGIIGLKLVNAT-----------------------------NEDAHIRDSIYVLTSALKEMNQS 257 (458)
Q Consensus 220 -------------~~~~g~~g~~~~~~~-----------------------------~~~~~~yDAv~~la~Al~~~~~~ 257 (458)
...+|++++.+..+. .+++++||||+++|+||+++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~ 338 (435)
T 1dp4_A 259 PWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQ 338 (435)
T ss_dssp TTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 125788877764432 13568999999999999999654
No 13
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=5.1e-32 Score=269.22 Aligned_cols=239 Identities=15% Similarity=0.212 Sum_probs=199.3
Q ss_pred cccccccccccccceEEEEeeee-eCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQ-MDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
|||||+++++++++++|.+.+.+ +.+++..++..+|+.+ +++|.|||| |.+|. ++.+++++++.++||+|+++++
T Consensus 27 v~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~V~aiiG--~~~S~-~~~~v~~i~~~~~ip~is~~~~ 102 (389)
T 4gpa_A 27 IFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQY-SRGVFAIFG--LYDKR-SVHTLTSFCSALHISLITPSFP 102 (389)
T ss_dssp HHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHH-HTTCSEEEE--CCCTT-THHHHHHHHHHTTCEEEECSCC
T ss_pred HHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHH-hcCCEEEEe--CCccH-HHHHHHHHHHHhCCCceecccc
Confidence 78999888888789999988544 4567778888888754 899999999 99996 9999999999999999998775
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE 160 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~ 160 (458)
.+ ++..|++++|+. +++++++++++|||++|++||+++.++. ..+.+.+.+++.| +++......+
T Consensus 103 ~~---~~~~~~~~~~~~-----~~~a~~~l~~~~~w~~vaii~~~d~~~~-~~~~~~~~~~~~g------~~v~~~~~~~ 167 (389)
T 4gpa_A 103 TE---GESQFVLQLRPS-----LRGALLSLLDHYEWNCFVFLYDTDRGYS-ILQAIMEKAGQNG------WHVSAICVEN 167 (389)
T ss_dssp CS---SCCSSEEECSCC-----CHHHHHHHHHHTTCCEEEEEECSTTCSH-HHHHHHHHHHTTT------CEEEEEECTT
T ss_pred cc---ccccCCccccCC-----HHHHHHHHHHHcCCcEEEEEEecchhhH-HHHHHHHHHHhcC------ceEEEEeecC
Confidence 54 455566666543 4579999999999999999998887665 4567778888887 4555555566
Q ss_pred CCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccCCC------CCeeEEEEecCCC
Q psy17441 161 PGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKNV------PVGIIGLKLVNAT 234 (458)
Q Consensus 161 ~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~~~------~~g~~g~~~~~~~ 234 (458)
....+++..+++++++++++|++.++..++..++++|+++|+++++++|+.++.+...... ..|+.+++...+.
T Consensus 168 ~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 247 (389)
T 4gpa_A 168 FNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISLERFIHGGANVTGFQLVDFN 247 (389)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGSCCHHHHHHBCEEEEEECSCTT
T ss_pred CcchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccchhhhhhhhcccceEEEEeecCC
Confidence 6788999999999999999999999999999999999999999999999999988766543 5788888876654
Q ss_pred ---------------------------chhHHHHHHHHHHHHHHHHHhhcCc
Q psy17441 235 ---------------------------NEDAHIRDSIYVLTSALKEMNQSAV 259 (458)
Q Consensus 235 ---------------------------~~~~~~yDAv~~la~Al~~~~~~~~ 259 (458)
.+++++||||+++|+||+++.+++.
T Consensus 248 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~ 299 (389)
T 4gpa_A 248 TPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKI 299 (389)
T ss_dssp SHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1478999999999999999998753
No 14
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=1.1e-31 Score=268.14 Aligned_cols=257 Identities=20% Similarity=0.294 Sum_probs=210.1
Q ss_pred cccccccccccccceEEEEeeeeeC-CCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMD-PNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
+||||++++++ +|++|+++..+.. .++......+|+. ++++|.|||| |.+|. ++.+++++++.++||+|+++++
T Consensus 30 v~eiN~~ggil-~~~~l~~~~~~~~~~d~~~~~~~a~~l-~~~~V~aiiG--~~~S~-~~~a~~~~~~~~~ip~is~~~~ 104 (395)
T 3h6g_A 30 VNTINRNRTLL-PNTTLTYDTQKINLYDSFEASKKACDQ-LSLGVAAIFG--PSHSS-SANAVQSICNALGVPHIQTRWK 104 (395)
T ss_dssp HHHHHHCSSSS-SSEEEEEEEEEEETTCHHHHHHHHHHH-HHHCCSCEEC--CSSHH-HHHHHHHHHHHTTCCEEECSCC
T ss_pred HHHHhcCcccc-CCceEEEEEeecCCcChHHHHHHHHHh-hhcCcEEEEC--CCChh-HHHHHHHHHhcCCCCeEeeccC
Confidence 78999777776 8999999976665 4776767777764 4789999999 99986 9999999999999999999999
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE 160 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~ 160 (458)
++.++++. +|+||+.|++..++.+++++++++||+||++|| |++||....+.+++.+++.|+ ++.... ++
T Consensus 105 ~~~l~~~~--~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~~~~~~g~------~v~~~~-~~ 174 (395)
T 3h6g_A 105 HQVSDNKD--SFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIKAPSRYNL------RLKIRQ-LP 174 (395)
T ss_dssp CCCTTCCC--CSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHTGGGTSSC------EEEEEE-CC
T ss_pred cccccccC--ceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHHhhhcCCc------eEEEEE-eC
Confidence 99998764 789999999999999999999999999999998 567999999999999999884 444443 67
Q ss_pred CCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccCCC----CCe--eEEEEecCCC
Q psy17441 161 PGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKNV----PVG--IIGLKLVNAT 234 (458)
Q Consensus 161 ~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~~~----~~g--~~g~~~~~~~ 234 (458)
.+..|+..++++|+++++|+|++++...++..++++++++|++.+.++|++++......+. ..| +.+++...+.
T Consensus 175 ~~~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 254 (395)
T 3h6g_A 175 ADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTE 254 (395)
T ss_dssp SSGGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBCCTTTTTSCCEEEEEECSCTT
T ss_pred CCchhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEechHHhccCccceEEEEEecCC
Confidence 7788999999999999999999999999999999999999999999999998753322211 233 5777765442
Q ss_pred --------------------------------chhHHHHHHHHHHHHHHHHHhhcCcccCCCcccCCCCcccccC
Q psy17441 235 --------------------------------NEDAHIRDSIYVLTSALKEMNQSAVITEAPQDCDNSGSIWETG 277 (458)
Q Consensus 235 --------------------------------~~~~~~yDAv~~la~Al~~~~~~~~~~~~~~~c~~~~~~W~~g 277 (458)
.+++++|||++++++|++++.. ...+..+|.... .|..+
T Consensus 255 ~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~---~~~~~~~c~~~~-~~~~~ 325 (395)
T 3h6g_A 255 NTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQ---MTVSSLQCNRHK-PWRFG 325 (395)
T ss_dssp SHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTT---CCCCCCCTTSCC-CCTTH
T ss_pred cHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhc---CCCcCCCCCCCC-cCccc
Confidence 1567999999999999997632 233456786542 35444
No 15
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=99.97 E-value=4.3e-30 Score=254.85 Aligned_cols=231 Identities=15% Similarity=0.245 Sum_probs=175.2
Q ss_pred cccccccccccccceEEEEeeeeeCC-CHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDP-NPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
+||||++ |++|+++..|+++ ++.+++..+|+.+ +++|.|||| |.+|. ++.+++++++.++||+|+++++
T Consensus 24 v~~iN~~------g~~l~~~~~d~~~~d~~~a~~~~~~li-~~~V~aiiG--~~~S~-~~~av~~~~~~~~ip~is~~~~ 93 (376)
T 3hsy_A 24 MVQFSTS------EFRLTPHIDNLEVANSFAVTNAFCSQF-SRGVYAIFG--FYDKK-SVNTITSFCGTLHVSFITPSFP 93 (376)
T ss_dssp HHHTCCS------SCEEEEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEE--CCCTT-THHHHHHHHHHHTCEEEECSCC
T ss_pred HHHHhcC------CeEEEEEEeecCCCChHHHHHHHHHHH-hcCcEEEEC--CCchh-HHHHHHHHhccCcCceeecCCC
Confidence 6899944 6788999888765 8888777777755 779999999 99996 9999999999999999999873
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE 160 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~ 160 (458)
+ ++ .++|+||+.|+ |+.++++++++|||+||++|| |++||....+.+.+.+++.|+ ++.....++
T Consensus 94 ~---~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~~~g~------~v~~~~~~~ 158 (376)
T 3hsy_A 94 T---DG--THPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKW------QVTAINVGN 158 (376)
T ss_dssp C---CS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHHHHTC------EEEEEECTT
T ss_pred C---cc--cCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHhhhcCC------eEEEEEecc
Confidence 2 23 34789999876 899999999999999999999 788999999999999999884 444433332
Q ss_pred C----CcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccCC---C---CCeeEEEEe
Q psy17441 161 P----GLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKN---V---PVGIIGLKL 230 (458)
Q Consensus 161 ~----~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~~---~---~~g~~g~~~ 230 (458)
. +..|+..++++|+++++|+|+++++..++..++++++++|+++++++||.++......+ + ..++++++.
T Consensus 159 ~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (376)
T 3hsy_A 159 INNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGANVSGFQI 238 (376)
T ss_dssp CC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTGGGSCCTTCEEEEEES
T ss_pred ccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccchHHhhcCCcCceEEEE
Confidence 1 35789999999999999999999999999999999999999988899999985333222 2 234778776
Q ss_pred cCCC----------------------------chhHHHHHHHHHHHHHHHHHhhc
Q psy17441 231 VNAT----------------------------NEDAHIRDSIYVLTSALKEMNQS 257 (458)
Q Consensus 231 ~~~~----------------------------~~~~~~yDAv~~la~Al~~~~~~ 257 (458)
..++ .+++++||||+++|+|++++..+
T Consensus 239 ~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~ 293 (376)
T 3hsy_A 239 VDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQ 293 (376)
T ss_dssp CCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 5432 24789999999999999998865
No 16
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=99.97 E-value=2.9e-29 Score=249.62 Aligned_cols=243 Identities=16% Similarity=0.256 Sum_probs=197.7
Q ss_pred cccccccccccccceEEEEeeeeeCC-CHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDP-NPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
+|+||++ | +|+++..|+++ ++.+++..+|+ |++++|.|||| |.+|. ++.+++++++.++||+|+++
T Consensus 32 v~~iN~~------g-~l~~~~~D~~~~d~~~a~~~~~~-l~~~~V~aiiG--~~~S~-~~~a~~~~~~~~~iP~is~~-- 98 (384)
T 3saj_A 32 LSQLTEP------P-KLLPQIDIVNISDSFEMTYRFCS-QFSKGVYAIFG--FYERR-TVNMLTSFCGALHVCFITPS-- 98 (384)
T ss_dssp HTTCCSS------S-EEEEEEEECCTTCHHHHHHHHHH-HHHTTCSCEEE--CCCHH-HHHHHHHHHHHHTCCEEECS--
T ss_pred HHHHhcC------C-ccceeeEecccCchhhHHHHHHH-HHhcCeEEEEC--CCCHH-HHHHHHHHhccCCCCeEecc--
Confidence 6899933 2 78888888887 88777777666 55779999999 99986 89999999999999999984
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE 160 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~ 160 (458)
++.++ + .+|+||+.|+ ++.+++++++++||+||++|| +++||....+.+++.+++.| +|+......+
T Consensus 99 ~~~~~-~--~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~~~~~~g------~~v~~~~~~~ 165 (384)
T 3saj_A 99 FPVDT-S--NQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVLDTAAEKN------WQVTAVNILT 165 (384)
T ss_dssp CCCSS-C--CTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHHHHT------CEEEEEEGGG
T ss_pred ccCcC-c--cCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHHHHhhhcC------ceEEEEEecc
Confidence 34443 3 3677888887 899999999999999999999 66899999999999999988 4445444445
Q ss_pred CCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccCCC------CCeeEEEEecCCC
Q psy17441 161 PGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKNV------PVGIIGLKLVNAT 234 (458)
Q Consensus 161 ~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~~~------~~g~~g~~~~~~~ 234 (458)
.+..|+..++++|+++++|+|+++++..++..++++++++|+++++|+||+++.+....++ ..|+++++++.+.
T Consensus 166 ~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 245 (384)
T 3saj_A 166 TTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDIDLNKFKESGANVTGFQLVNYT 245 (384)
T ss_dssp CCHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGSCHHHHHHTTCCEEEEECCCTT
T ss_pred CCchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccccHHHhhCCCcceEEEEeecCC
Confidence 5678899999999999999999999999999999999999999988999999865444332 4578888876653
Q ss_pred ----------------------------chhHHHHHHHHHHHHHHHHHhhcC-cc--cCCCcccCCC
Q psy17441 235 ----------------------------NEDAHIRDSIYVLTSALKEMNQSA-VI--TEAPQDCDNS 270 (458)
Q Consensus 235 ----------------------------~~~~~~yDAv~~la~Al~~~~~~~-~~--~~~~~~c~~~ 270 (458)
.+++++||||+++++|++++..++ ++ +.++.+|...
T Consensus 246 ~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~~~~~~~~~c~~~ 312 (384)
T 3saj_A 246 DTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDISRRGNAGDCLAN 312 (384)
T ss_dssp SHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSCCCSCCB
T ss_pred ChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCCCCCCCC
Confidence 137899999999999999988643 22 2445678653
No 17
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=99.94 E-value=2.2e-26 Score=228.92 Aligned_cols=241 Identities=12% Similarity=0.022 Sum_probs=196.5
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhhc-CCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLIS-ERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
+++||+++|++ +|+++++..+|+.+++..+... +++|++ ++|.+||| |.+|. .+.+++++++..+||+|++.++
T Consensus 32 ~~~iN~~ggi~-Gg~~i~l~~~D~~~~~~~~~~~-~~~li~~~~v~aiiG--~~~s~-~~~a~~~~~~~~~ip~i~~~~~ 106 (387)
T 3i45_A 32 VEQINAAGGLL-GGRPLEVISRDDGGDPGKAVTA-AQELLTRHGVHALAG--TFLSH-VGLAVSDFARQRKVLFMASEPL 106 (387)
T ss_dssp HHHHHHTTCBT-TTBCEEEEEEECTTCHHHHHHH-HHHHHHHHCCSEEEE--CCSHH-HHHHHHHHHHHHTCCEEECSCC
T ss_pred HHHHHhcCCCC-CCcceEEEEecCCCCHHHHHHH-HHHHHHhcCCEEEEC--CcchH-HHHHHHHHHHHcCceEEecCCC
Confidence 57899666655 5589999999999998766555 455655 69999999 88885 8889999999999999999998
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhcc--CCcceeeEEEEEEEE
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQ--EDDVEIKVQVEAVIE 158 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~--gi~v~~~~~v~~~~~ 158 (458)
++.++++..+|++||+.|++..++.++++++.++||++|++|+.+++||+...+.+++.+++. | +++.....
T Consensus 107 ~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g------~~vv~~~~ 180 (387)
T 3i45_A 107 TDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARFKELLLAARPE------VTFVAEQW 180 (387)
T ss_dssp CGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHHHHHHHHHCTT------CEEEEEEC
T ss_pred chhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHHHHHHHHhCCC------cEEEeeec
Confidence 888876666899999999999999999999999999999999999999999999999999987 5 45555555
Q ss_pred eCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccc-------cCCCCCeeEEEEe-
Q psy17441 159 FEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALT-------AKNVPVGIIGLKL- 230 (458)
Q Consensus 159 ~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~-------~~~~~~g~~g~~~- 230 (458)
++.+..|+...++++++.++++|++.+...++..++++++++|+.. .+++.+..+.. .....+|++....
T Consensus 181 ~~~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~--~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 258 (387)
T 3i45_A 181 PALYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFA--GRQVVSMLTGEPEYLNPLKDEAPEGWIVTGYP 258 (387)
T ss_dssp CCTTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSST--TCEEEEEEEESHHHHGGGGGGCCSSCEEEECC
T ss_pred CCCCCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCC--CCeEEeecCCChHHHHHhhhhccCceEEeccc
Confidence 6667789999999999999999999999999999999999999964 34444433211 1123678776532
Q ss_pred cC-CC--------------------chhHHHHHHHHHHHHHHHHHh
Q psy17441 231 VN-AT--------------------NEDAHIRDSIYVLTSALKEMN 255 (458)
Q Consensus 231 ~~-~~--------------------~~~~~~yDAv~~la~Al~~~~ 255 (458)
.. .+ .+++.+|||++++++|+++.-
T Consensus 259 ~~~~~~~~~~~f~~~~~~~~~~~p~~~~~~~Yda~~~~a~Al~~ag 304 (387)
T 3i45_A 259 WYDIDTAPHRAFVEAYRARWKEDPFVGSLVGYNTLTAMAVAFEKAG 304 (387)
T ss_dssp GGGCCCHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 21 11 246789999999999999763
No 18
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=99.94 E-value=2e-25 Score=220.77 Aligned_cols=237 Identities=15% Similarity=0.108 Sum_probs=196.6
Q ss_pred cccccccccccccceEEEEeeeeeCC-CHHHHHHHHHHHhh-cCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeec
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDP-NPILTALSVCKFLI-SERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISS 79 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~-~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a 79 (458)
++++| |.+ .|++++++.+|+.+ ++.+ +...+++|+ +++|.+||| |.+|+ .+.+++++++..+||+|++++
T Consensus 33 ~~~~n---ggi-~G~~ielv~~D~~~~~p~~-a~~~a~~Li~~d~V~aiiG--~~~S~-~~~a~~~~~~~~~vp~i~~~a 104 (371)
T 4f06_A 33 VAEHG---NKV-AGHTVEFVYRDEVSPNPAQ-SKALAQELIVKEKVQYLAG--LYFTP-NAMAVAPLLQEAKVPMVVMNA 104 (371)
T ss_dssp HHHHC---SEE-TTEEEEEEEEECCSSCHHH-HHHHHHHHHHTSCCSEEEE--CCSHH-HHHHHGGGHHHHTCCEEESSC
T ss_pred HHHhC---CCC-CCEEEEEEEEcCCCCCHHH-HHHHHHHHHhcCCCEEEEe--ccccc-chHHHHHHHHhhcCCcccccc
Confidence 46677 345 68999999998876 6654 444466676 579999999 99986 899999999999999999999
Q ss_pred CCCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEe
Q psy17441 80 RDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEF 159 (458)
Q Consensus 80 ~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~ 159 (458)
+++.++.+. ||+||+.|++..+..+++++++..+|+++++|+.+++||+...+.+++.+++.| .++.....+
T Consensus 105 ~~~~~~~~~--~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~~~~~~~~~g------~~vv~~~~~ 176 (371)
T 4f06_A 105 ATSSITEKS--PYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETAFKKTFEAEG------GKVVEAVRM 176 (371)
T ss_dssp CCGGGGGGC--TTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTT------CEEEEEEEE
T ss_pred ccchhcccC--CcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHHHHHHHHHhcC------CceEEEEec
Confidence 999887664 899999999999999999999999999999999999999999999999999988 455666778
Q ss_pred CCCcccHHHHHHHHHhccCeEEEEEeC-hhhHHHHHHHHHhcCCcccceEEEeeccccccC------CCCCeeEEEEecC
Q psy17441 160 EPGLTTFKDQLYEMKNAQARVYLMYAS-KQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK------NVPVGIIGLKLVN 232 (458)
Q Consensus 160 ~~~~~d~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~------~~~~g~~g~~~~~ 232 (458)
+.+..|+..++++|+++++|+|++... ..++..+++++++.|+......++.+....... ...+|++....+.
T Consensus 177 ~~~~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 256 (371)
T 4f06_A 177 PLSTTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDVVTEPDLPNIGEAGLGILSTYHYA 256 (371)
T ss_dssp CTTCCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGGGCGGGHHHHCGGGTTCEEEESCC
T ss_pred CcccccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEecccCCHHHHHhcccccCceEEeeccc
Confidence 888999999999999999999988765 467888999999999987667777766544332 2356777766554
Q ss_pred CC------------------------chhHHHHHHHHHHHHHHHHH
Q psy17441 233 AT------------------------NEDAHIRDSIYVLTSALKEM 254 (458)
Q Consensus 233 ~~------------------------~~~~~~yDAv~~la~Al~~~ 254 (458)
+. .+++.+|||++++++|+++.
T Consensus 257 ~~~~~p~~~~f~~~~~~~~~~~~~~~~~a~~~Yda~~~l~~Ai~~~ 302 (371)
T 4f06_A 257 VSHDSPENKAFLALLQKGGAKLDEVTMTSVAAYDGARLIYKMIEAT 302 (371)
T ss_dssp TTCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCChhHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHh
Confidence 32 14678999999999999864
No 19
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=99.93 E-value=2.8e-25 Score=223.33 Aligned_cols=238 Identities=12% Similarity=0.083 Sum_probs=191.5
Q ss_pred cccccccccccccceEEEEeeeeeC-CCHHHHHHHHHHHhhc-CCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeec
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMD-PNPILTALSVCKFLIS-ERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISS 79 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~-~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a 79 (458)
+++||+++| + .|+++++..+|++ +++..+... +++|+. ++|.+||| |.+|. .+.+++++++.++||+|++++
T Consensus 42 ~~~iN~~gg-i-~G~~i~l~~~D~~~~~~~~a~~~-a~~li~~~~v~aiiG--~~~s~-~~~a~~~~~~~~~ip~i~~~~ 115 (419)
T 3h5l_A 42 ADEINAVGG-I-LGRPIELVFADTQSKGVDVVIQS-AQRLIDRDNASALIA--GYNLE-NGTALHDVAADAGVIAMHANT 115 (419)
T ss_dssp HHHHHTTTS-B-TTBCEEEEEEECTTCCHHHHHHH-HHHHHHTTCCSEEEC--SCCSS-CSCHHHHHHHHHTCEEEECCC
T ss_pred HHHHHhcCC-c-CceEEEEEEccCCCCCHHHHHHH-HHHHhhhcCCeEEEc--cccch-hHHHhHHHHHHcCCeEEEcCc
Confidence 689995555 4 4889999988887 577555444 555665 89999999 98886 889999999999999999754
Q ss_pred CCCCC-----CCCccccceeecCCCchhHHHHHHHHHHhc--------CCeEEEEEEecCcchhHHHHHHHHhhhccCCc
Q psy17441 80 RDSAF-----SDKNIHVSFLRTVPPYSHQADVWVELLKHF--------NYMKVIFIHSSDTDGRALLGRFQTTSQNQEDD 146 (458)
Q Consensus 80 ~~~~l-----s~~~~~p~~~r~~p~~~~~~~ai~~ll~~~--------~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~ 146 (458)
++.+ .++..|+++||+.|++..++.+++++++++ +|++|++|+++++||+...+.+++.+++.|
T Consensus 116 -~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~g-- 192 (419)
T 3h5l_A 116 -VAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITGPGIYSVNIANAIRDGAGEYG-- 192 (419)
T ss_dssp -CHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEEEEECSSHHHHHHHHHHHHHGGGGT--
T ss_pred -chhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEEEEEEcCcchhHHHHHHHHHHHHHcC--
Confidence 3322 244568999999999999999999999886 999999999999999999999999999988
Q ss_pred ceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeC-hhhHHHHHHHHHhcCCcccceEEEeeccccccC------
Q psy17441 147 VEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYAS-KQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK------ 219 (458)
Q Consensus 147 v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~------ 219 (458)
+++.....++.+..|+..++++|++.++|+|++.+. +.++..++++++++|+. ..|+.++.+....
T Consensus 193 ----~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~g 265 (419)
T 3h5l_A 193 ----YDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTDPTN---SLVYLQYGASLAAFRDIAG 265 (419)
T ss_dssp ----CEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTSCCS---CEEEECSGGGSHHHHHHHG
T ss_pred ----CeEEEEecCCCCCccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHcCCC---ceEEecCCCCcHHHHHhhh
Confidence 455566667778889999999999999999999866 46899999999999994 5788777765331
Q ss_pred CCCCeeEEEEecCC-C---------------------chhHHHHHHHHHHHHHHHHHh
Q psy17441 220 NVPVGIIGLKLVNA-T---------------------NEDAHIRDSIYVLTSALKEMN 255 (458)
Q Consensus 220 ~~~~g~~g~~~~~~-~---------------------~~~~~~yDAv~~la~Al~~~~ 255 (458)
...+|++....... . .+++.+|||++++++|+++..
T Consensus 266 ~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~~a~~~Yda~~~~~~a~~~a~ 323 (419)
T 3h5l_A 266 DNSVGVTYATVLGTLQDEMGDAFAKAYKERYGDLSSTASGCQTYSALYAYSIAAALAG 323 (419)
T ss_dssp GGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhcCceEEeecCCCCCCHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 23677776543321 1 156789999999999998654
No 20
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=99.93 E-value=1.3e-24 Score=215.15 Aligned_cols=239 Identities=10% Similarity=0.022 Sum_probs=197.0
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhhc-CCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLIS-ERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
+++|| |++ .|+++++..+|+.+++..+... +++|++ ++|.+||| |.+|. .+.++++++..++||+|+++++
T Consensus 33 ~~~~~---ggi-~G~~i~l~~~D~~~~~~~a~~~-~~~li~~~~v~~iiG--~~~s~-~~~a~~~~~~~~~ip~i~~~~~ 104 (375)
T 3i09_A 33 VADFG---GKV-NGKPIEVVYADHQNKADIAASK-AREWMDRGGLDLLVG--GTNSA-TALSMNQVAAEKKKVYINIGAG 104 (375)
T ss_dssp HHHHT---SEE-TTEEEEEEEEECTTCHHHHHHH-HHHHHHHSCEEEEEE--CSCHH-HHHHHHHHHHHHTCEEEECSCC
T ss_pred HHHhC---CCC-CCeEEEEEEecCCCCHHHHHHH-HHHHHhhCCCEEEEC--CCCcH-HHHHHHHHHHHcCceEEEeCCC
Confidence 35553 345 6889999999999998665555 555666 99999999 88885 8889999999999999999999
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE 160 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~ 160 (458)
++.++++..+|++||+.|++..++.++++++.++||++|++|+.++++|+...+.+++.+++.| +++.....++
T Consensus 105 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~~~~~G------~~v~~~~~~~ 178 (375)
T 3i09_A 105 ADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEKNTADVVKANG------GKVLGEVRHP 178 (375)
T ss_dssp CGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTT------CEEEEEEEEC
T ss_pred chhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHHHHHHHHHHcC------CEEeeeeeCC
Confidence 9989887678999999999999999999999999999999999999999999999999999988 4455555666
Q ss_pred CCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC-----CCCCeeEEEEecCCC-
Q psy17441 161 PGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK-----NVPVGIIGLKLVNAT- 234 (458)
Q Consensus 161 ~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~-----~~~~g~~g~~~~~~~- 234 (458)
.+..|+...++++++.++++|++.++..++..++++++++|+..+. .++..+.+.... ...+|++...++.+.
T Consensus 179 ~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 257 (375)
T 3i09_A 179 LSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFINDVHALGLETTQGLVLTDSWYWNR 257 (375)
T ss_dssp TTCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCHHHHHHHCHHHHTTCEEEESCCTTS
T ss_pred CCCccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccchhhHhhhChhhhCCeeeeeeecCCC
Confidence 6788999999999999999999999999999999999999998755 444443332211 236777776655432
Q ss_pred --------------------chhHHHHHHHHHHHHHHHHHh
Q psy17441 235 --------------------NEDAHIRDSIYVLTSALKEMN 255 (458)
Q Consensus 235 --------------------~~~~~~yDAv~~la~Al~~~~ 255 (458)
.+++.+|||++++++|+++.-
T Consensus 258 ~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Al~~ag 298 (375)
T 3i09_A 258 DQASRQWAQRYFAKMKKMPSSLQAADYSSVTTYLKAVQAAG 298 (375)
T ss_dssp SHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 247799999999999999864
No 21
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=99.93 E-value=9.7e-25 Score=216.36 Aligned_cols=239 Identities=9% Similarity=0.020 Sum_probs=197.0
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhhc-CCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLIS-ERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
+++|| |++ .|+++++..+|+.+++..+... +++|++ ++|.+||| |.+|. .+.+++++++.++||+|+++++
T Consensus 35 ~~~i~---ggi-~G~~i~l~~~D~~~~~~~a~~~-~~~li~~~~v~~iiG--~~~s~-~~~a~~~~~~~~~ip~i~~~~~ 106 (379)
T 3n0w_A 35 IEDVG---GKA-LGQPVKLVSADYQMKTDVALSI-AREWFDRDGVDAIFD--VVNSG-TALAINNLVKDKKKLAFITAAA 106 (379)
T ss_dssp HHHTT---TEE-TTEECEEEEEECTTCHHHHHHH-HHHHHHHSCCCEEEE--CCCHH-HHHHHHHHHHHHTCEEEECSCC
T ss_pred HHHhc---CCC-CCeEEEEEEeCCCCCHHHHHHH-HHHHHHhCCceEEEc--CCCcH-HHHHHHHHHHHcCceEEEcCCC
Confidence 45664 335 6889999999999998665555 555666 89999999 88885 8899999999999999999999
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE 160 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~ 160 (458)
++.++++..+|++||+.|++..++.++++++.++||+++++|+.++++|+...+.+++.+++.| +++.....++
T Consensus 107 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~~~~~G------~~v~~~~~~~ 180 (379)
T 3n0w_A 107 ADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMNAAIRRELTAGG------GQIVGSVRFP 180 (379)
T ss_dssp CTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHT------CEEEEEEEEC
T ss_pred chhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHHHHHHHHHHHcC------CEEEEEEeCC
Confidence 9989887668999999999999999999999999999999999999999999999999999988 4455555667
Q ss_pred CCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC------CCCCeeEEEEecCCC
Q psy17441 161 PGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK------NVPVGIIGLKLVNAT 234 (458)
Q Consensus 161 ~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~------~~~~g~~g~~~~~~~ 234 (458)
.+..|+...++++++.++++|++.+...++..++++++++|+..+. .++.+..+.... ...+|++...++.++
T Consensus 181 ~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 259 (379)
T 3n0w_A 181 FETQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKT-QKVGGMIDILTDVKSAGLRVMQGQEYATSFYWN 259 (379)
T ss_dssp TTCCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSS-CEEECCBCCHHHHHHHCHHHHTTCEEEESCCTT
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCC-cEEEecccchHHHHhhCHHhhCCeEEEeeecCC
Confidence 6788999999999999999999999989999999999999998743 345544432211 236777766654332
Q ss_pred ---------------------chhHHHHHHHHHHHHHHHHHh
Q psy17441 235 ---------------------NEDAHIRDSIYVLTSALKEMN 255 (458)
Q Consensus 235 ---------------------~~~~~~yDAv~~la~Al~~~~ 255 (458)
.+++.+|||++++++|+++.-
T Consensus 260 ~~~~~~~f~~~~~~~~g~~p~~~~~~~Yda~~~~~~Al~~ag 301 (379)
T 3n0w_A 260 MDDRTRAFAKRFYAKMGKMPTNNQAGGYSAALQYLKAVNAIG 301 (379)
T ss_dssp SSHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 257899999999999999764
No 22
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=99.92 E-value=1.6e-24 Score=212.79 Aligned_cols=238 Identities=14% Similarity=0.104 Sum_probs=196.2
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRD 81 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~ 81 (458)
+++||++ |++ +|+++.+..+|+.+++...... ++.|++++|.+||| |.++. .+.++++++...+||+|++.+++
T Consensus 30 ~~~iN~~-ggi-~G~~~~l~~~d~~~~~~~~~~~-~~~l~~~~v~~iig--~~~s~-~~~~~~~~~~~~~ip~v~~~~~~ 103 (356)
T 3ipc_A 30 AKDINAA-GGI-NGEQIKIVLGDDVSDPKQGISV-ANKFVADGVKFVVG--HANSG-VSIPASEVYAENGILEITPAATN 103 (356)
T ss_dssp HHHHHHT-TCB-TTBCEEEEEEECTTCHHHHHHH-HHHHHHTTCCEEEE--CSSHH-HHHHHHHHHHTTTCEEEESSCCC
T ss_pred HHHHHhc-CCC-CCeEEEEEEecCCCCHHHHHHH-HHHHHHCCCcEEEc--CCCcH-HHHHHHHHHHhCCCeEEecCCCC
Confidence 5789954 455 7899999999999998665555 55566799999999 88875 78889999999999999999999
Q ss_pred CCCCCCccccceeecCCCchhHHHHHHHHH-HhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC
Q psy17441 82 SAFSDKNIHVSFLRTVPPYSHQADVWVELL-KHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE 160 (458)
Q Consensus 82 ~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll-~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~ 160 (458)
+.++++ .+|++||+.|++..++.++++++ +++||+++++|+.++++|....+.+++.+++.|+++ .....++
T Consensus 104 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v------~~~~~~~ 176 (356)
T 3ipc_A 104 PVFTER-GLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTE------VMYEGVN 176 (356)
T ss_dssp GGGGSS-CCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCC------SEEEECC
T ss_pred cHhhcC-CCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEE------EEEEeeC
Confidence 888875 47999999999999999999955 667999999999999999999999999999998554 2334456
Q ss_pred CCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC------CCCCeeEEEEecCC-
Q psy17441 161 PGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK------NVPVGIIGLKLVNA- 233 (458)
Q Consensus 161 ~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~------~~~~g~~g~~~~~~- 233 (458)
.+..++...++++++.++++|++++...++..+++++++.|+.. .|+.++.+.+.. ...+|++....+.+
T Consensus 177 ~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 253 (356)
T 3ipc_A 177 VGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKA---KLVSGDGIVSNELASIAGDAVEGTLNTFGPDPT 253 (356)
T ss_dssp TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCC---EEEECGGGCSHHHHHHHGGGGTTCEEEESCCGG
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCC---cEEEeccccCHHHHHHhhHHhCCEEEEecCCCC
Confidence 67789999999999999999999999999999999999999974 678777654321 23677776654432
Q ss_pred -------------------CchhHHHHHHHHHHHHHHHHHh
Q psy17441 234 -------------------TNEDAHIRDSIYVLTSALKEMN 255 (458)
Q Consensus 234 -------------------~~~~~~~yDAv~~la~Al~~~~ 255 (458)
..+++.+|||++++++|+++.-
T Consensus 254 ~~~~~~~f~~~~~~~~~~p~~~~~~~yda~~~~~~al~~ag 294 (356)
T 3ipc_A 254 LRPENKELVEKFKAAGFNPEAYTLYSYAAMQAIAGAAKAAG 294 (356)
T ss_dssp GCGGGHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHhC
Confidence 2357899999999999999763
No 23
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=99.92 E-value=3.5e-24 Score=212.03 Aligned_cols=240 Identities=10% Similarity=-0.016 Sum_probs=186.2
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhhc-CCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLIS-ERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
+++||+..|++ .|++++++.+|+.+++..+... +++|++ ++|.+||| |.+|. .+.+++++++.+++|+|++.++
T Consensus 32 ~~~iN~~~ggi-~G~~i~l~~~D~~~~~~~a~~~-~~~li~~~~v~aiiG--~~~s~-~~~a~~~~~~~~~ip~i~~~~~ 106 (374)
T 3n0x_A 32 LEYATKGTMTL-DGRKIVVITKDDQSKPDLSKAA-LAEAYQDDGADIAIG--TSSSA-AALADLPVAEENKKILIVEPAV 106 (374)
T ss_dssp HHHHTTTCCEE-TTEEEEEEEEECTTCHHHHHHH-HHHHHHTSCCSEEEE--CSSHH-HHHHHHHHHHHHTCCEEECSCC
T ss_pred HHHHhccCCCc-CCEEEEEEEecCCCCHHHHHHH-HHHHHHhCCceEEEc--CCCcH-HHHHHHHHHHHcCccEEEcCCC
Confidence 57899535666 7999999999999998776665 455555 79999999 98886 8999999999999999998888
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE 160 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~ 160 (458)
++.++++..+|++||+.|++..+..+++.++++++| ++++|+.+++||+...+.+++.+++.| +++.....++
T Consensus 107 ~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~~~~~~~~~G------~~vv~~~~~~ 179 (374)
T 3n0x_A 107 ADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVAAFKEALAKTG------ATLATEEYVP 179 (374)
T ss_dssp CGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHHHHHHHHTTTT------CEEEEEEEEC
T ss_pred chhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHHHHHHHHHHcC------CEEeeeecCC
Confidence 888887766799999999999999999988899998 899999999999999999999999988 4555566677
Q ss_pred CCcccHHHHHHHHHhcc-----CeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccc--cccC-CCCCeeEEEEecC
Q psy17441 161 PGLTTFKDQLYEMKNAQ-----ARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQA--LTAK-NVPVGIIGLKLVN 232 (458)
Q Consensus 161 ~~~~d~~~~l~~ik~~~-----~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~--~~~~-~~~~g~~g~~~~~ 232 (458)
.+..|+..++++|++.+ +|+|++....... .+.++.++++...++.++..+.. .... ....|+.+...+.
T Consensus 180 ~~~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 257 (374)
T 3n0x_A 180 TTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELSTGGNILPALAAYKRLPGMEGATYYY 257 (374)
T ss_dssp TTCCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEECCCCTTGGGGGGGSTTCEEEESCC
T ss_pred CCCccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeeeccccchhhhhhhhhcCccccceec
Confidence 78889999999999998 9999887433221 23445555554444454443322 1111 2356666665432
Q ss_pred C---C--------------------chhHHHHHHHHHHHHHHHHHh
Q psy17441 233 A---T--------------------NEDAHIRDSIYVLTSALKEMN 255 (458)
Q Consensus 233 ~---~--------------------~~~~~~yDAv~~la~Al~~~~ 255 (458)
+ . .+++.+|||++++++|+++.-
T Consensus 258 ~~~~~~~~~~~f~~~y~~~~g~~p~~~a~~~Yda~~~l~~Al~~ag 303 (374)
T 3n0x_A 258 YDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKAK 303 (374)
T ss_dssp TTSCCSHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHhC
Confidence 2 1 247899999999999999763
No 24
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=99.92 E-value=5.2e-24 Score=209.92 Aligned_cols=231 Identities=15% Similarity=0.125 Sum_probs=194.5
Q ss_pred cccceEEEEeeeeeCCCHHHHHHHHHHHhhc-CCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccc
Q psy17441 12 VNKGVTFSATGIQMDPNPILTALSVCKFLIS-ERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIH 90 (458)
Q Consensus 12 l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~ 90 (458)
+ +|+++++..+|+.+++...... ++.|+. ++|.+||| |.+|. .+.++++++...+||+|+++++++.++++ +
T Consensus 41 i-~G~~i~l~~~D~~~~~~~~~~~-~~~li~~~~v~~iiG--~~~s~-~~~~~~~~~~~~~ip~i~~~~~~~~~~~~--~ 113 (368)
T 4eyg_A 41 V-AGKKIEVILKDDAAIPDNTKRL-AQELIVNDKVNVIAG--FGITP-AALAAAPLATQAKVPEIVMAAGTSIITER--S 113 (368)
T ss_dssp E-TTEEEEEEEEECTTCHHHHHHH-HHHHHHTSCCSEEEE--CSSHH-HHHHHHHHHHHHTCCEEESSCCCGGGGGG--C
T ss_pred C-CCeEEEEEEeCCCCCHHHHHHH-HHHHHhcCCcEEEEC--CCccH-HHHHHHHHHHhCCceEEeccCCChhhccC--C
Confidence 5 7899999999999988665555 555665 89999999 88885 88899999999999999999988888765 6
Q ss_pred cceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHH
Q psy17441 91 VSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQL 170 (458)
Q Consensus 91 p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l 170 (458)
|++||+.|++..++.++++++.++||+++++|+.++.+|....+.+++.+++.| +++.....++.+..|+...+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g------~~v~~~~~~~~~~~d~~~~~ 187 (368)
T 4eyg_A 114 PYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAFFKERFTAGG------GEIVEEIKVPLANPDFAPFL 187 (368)
T ss_dssp TTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTT------CEEEEEEEECSSSCCCHHHH
T ss_pred CCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHHHHHHHHHcC------CEEEEEEeCCCCCCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999988 44445555666778999999
Q ss_pred HHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeecccccc------CCCCCeeEEEEecCCC----------
Q psy17441 171 YEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTA------KNVPVGIIGLKLVNAT---------- 234 (458)
Q Consensus 171 ~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~------~~~~~g~~g~~~~~~~---------- 234 (458)
+++++.++++|++.+...++..++++++++|+..++..|+.++++.+. ....+|++...++.+.
T Consensus 188 ~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~ 267 (368)
T 4eyg_A 188 QRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMDDDLLNSMGDAALGVVTAHMYSAAHPSAMNKEFV 267 (368)
T ss_dssp HHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTCHHHHTTCCGGGTTCEEEESCCTTCCSHHHHHHH
T ss_pred HHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccCHHHHHhhhhhhCCeEEeeecCCCCCCHHHHHHH
Confidence 999999999999999889999999999999998765778888753321 1236788776655432
Q ss_pred ------------chhHHHHHHHHHHHHHHHHHh
Q psy17441 235 ------------NEDAHIRDSIYVLTSALKEMN 255 (458)
Q Consensus 235 ------------~~~~~~yDAv~~la~Al~~~~ 255 (458)
.+++.+|||++++++|+++.-
T Consensus 268 ~~~~~~~~~~p~~~~~~~yda~~~~~~al~~~g 300 (368)
T 4eyg_A 268 AAYKKEFGQRPGFMAVGGYDGIHLVFEALKKTG 300 (368)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 246789999999999999864
No 25
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=99.92 E-value=4.2e-24 Score=208.66 Aligned_cols=237 Identities=14% Similarity=0.126 Sum_probs=192.6
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRD 81 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~ 81 (458)
+++||++ |++ +|+++++..+|+..++..... .++.|++++|.+||| |.++. .+.++.+++...++|+|++.+++
T Consensus 30 ~~~iN~~-ggi-~G~~l~l~~~d~~~~~~~~~~-~~~~l~~~~v~~iig--~~~s~-~~~~~~~~~~~~~ip~v~~~~~~ 103 (346)
T 1usg_A 30 IKDINAK-GGI-KGDKLVGVEYDDACDPKQAVA-VANKIVNDGIKYVIG--HLCSS-STQPASDIYEDEGILMISPGATN 103 (346)
T ss_dssp HHHHHHT-TTB-TTBCEEEEEEECTTCHHHHHH-HHHHHHHTTCCEEEC--CSSHH-HHHHHHHHHHHHTCEEEECCCCC
T ss_pred HHHHHHh-CCC-CCeEEEEEEeCCCCCHHHHHH-HHHHHHhCCCCEEEc--CCCcH-HHHHHHHHHHHCCCeEEeeCCCC
Confidence 5789955 556 789999998888888765444 456677899999999 87764 67788899999999999999888
Q ss_pred CCCCCCccccceeecCCCchhHHHHHHHHH-HhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC
Q psy17441 82 SAFSDKNIHVSFLRTVPPYSHQADVWVELL-KHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE 160 (458)
Q Consensus 82 ~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll-~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~ 160 (458)
+.++++. +|++||+.|++..++.++++++ +++||+++++|+.++++|....+.+++.+++.|++ +.....++
T Consensus 104 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~------v~~~~~~~ 176 (346)
T 1usg_A 104 PELTQRG-YQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANAN------VVFFDGIT 176 (346)
T ss_dssp GGGGSSC-CSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCC------EEEEEECC
T ss_pred hHHhcCC-CCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHHHHHHHcCCE------EEEEeccC
Confidence 8787654 6899999999999999999988 55899999999999889999999999999998844 33334455
Q ss_pred CCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC------CCCCeeEEEEecCCC
Q psy17441 161 PGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK------NVPVGIIGLKLVNAT 234 (458)
Q Consensus 161 ~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~------~~~~g~~g~~~~~~~ 234 (458)
.+..|+...++++++.++++|++.+...++..++++++++|+.. .|+.++.+.... ...+|+++..++...
T Consensus 177 ~~~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 253 (346)
T 1usg_A 177 AGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKT---QFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYD 253 (346)
T ss_dssp TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---EEEECGGGCCTTHHHHHGGGGTTCEEEECCCGG
T ss_pred CCCcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCC---eEEecCCCCcHHHHHHhhHhhCCeEEecCCCCC
Confidence 56678889999999999999999998888999999999999975 488887765432 236788877644211
Q ss_pred ---------------------chhHHHHHHHHHHHHHHHHH
Q psy17441 235 ---------------------NEDAHIRDSIYVLTSALKEM 254 (458)
Q Consensus 235 ---------------------~~~~~~yDAv~~la~Al~~~ 254 (458)
.+++.+|||++++++|+++.
T Consensus 254 ~~~~~~~f~~~~~~~~~~~~~~~~~~~yda~~~~~~al~~~ 294 (346)
T 1usg_A 254 QDPANQGIVDALKADKKDPSGPYVWITYAAVQSLATALERT 294 (346)
T ss_dssp GSGGGHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHh
Confidence 25789999999999999976
No 26
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=99.92 E-value=1.4e-23 Score=206.04 Aligned_cols=237 Identities=12% Similarity=0.089 Sum_probs=197.1
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhh-cCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLI-SERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
++++|+++| + .|+++.+..+|+.+++...... ++.|+ +++|.+||| |.++. .+.++++++...+||+|++.++
T Consensus 32 ~~~~n~~gg-i-~G~~~~l~~~d~~~~~~~~~~~-~~~l~~~~~v~~iig--~~~s~-~~~~~~~~~~~~~iP~v~~~~~ 105 (358)
T 3hut_A 32 LDRFNAAGG-V-GGRPVDILYADSRDDADQARTI-ARAFVDDPRVVGVLG--DFSST-VSMAAGSIYGKEGMPQLSPTAA 105 (358)
T ss_dssp HHHHHHTTT-B-TTBCEEEEEEECTTCHHHHHHH-HHHHHHCTTEEEEEE--CSSHH-HHHHHHHHHHHHTCCEEESSCC
T ss_pred HHHHHhhCC-C-CCeEEEEEEecCCCCHHHHHHH-HHHHhccCCcEEEEc--CCCcH-HHHHHHHHHHHCCCcEEecCCC
Confidence 578895544 5 4888999999999888665544 55666 799999999 87775 7788899999999999999998
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE 160 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~ 160 (458)
++.++++. |++||+.|++..++.++++++...||++|++|+.++++|....+.+++.+++.|+ ++.....++
T Consensus 106 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~------~v~~~~~~~ 177 (358)
T 3hut_A 106 HPDYIKIS--PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFRKAFELRGG------AVVVNEEVP 177 (358)
T ss_dssp CGGGTTSC--TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTC------EEEEEEEEC
T ss_pred CcccccCC--CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHHHHcCC------EEEEEEecC
Confidence 88887665 8999999999999999999998889999999999999999999999999999883 444444566
Q ss_pred CCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC------CCCCeeEEEEecCCC
Q psy17441 161 PGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK------NVPVGIIGLKLVNAT 234 (458)
Q Consensus 161 ~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~------~~~~g~~g~~~~~~~ 234 (458)
.+..++...++++++.++++|++.++...+..+++++++.|+. ..|+.++.+.... ...+|++...++.+.
T Consensus 178 ~~~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~---~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 254 (358)
T 3hut_A 178 PGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSA---LPVYGSSALYSPKFIDLGGPAVEGVRLATAFVLG 254 (358)
T ss_dssp TTCCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCC---CCEEECGGGCSHHHHHHHGGGGTTCEEEESCCTT
T ss_pred CCCccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCC---CcEEecCcccCHHHHHHhHHhhCCeEEEeccCCC
Confidence 6778999999999999999999999998999999999999996 4578777654321 247888887765443
Q ss_pred ----------------------chhHHHHHHHHHHHHHHHHHh
Q psy17441 235 ----------------------NEDAHIRDSIYVLTSALKEMN 255 (458)
Q Consensus 235 ----------------------~~~~~~yDAv~~la~Al~~~~ 255 (458)
.+++.+|||++++++|+++.-
T Consensus 255 ~~~~~~~~f~~~~~~~~~~~p~~~~~~~yda~~~~~~al~~ag 297 (358)
T 3hut_A 255 ASDPVVVEFVSAYETLYGAIPTLFAAHGYDAVGIMLAAVGRAG 297 (358)
T ss_dssp CCSHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 247899999999999998753
No 27
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=99.91 E-value=1.6e-23 Score=206.49 Aligned_cols=233 Identities=15% Similarity=0.120 Sum_probs=192.4
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhhc-CCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLIS-ERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
+++||+ + .|+++++..+|+.+++...... ++.|++ ++|.+||| |.+|. .+.++++++..++||+|++.++
T Consensus 44 ~~~in~----i-~G~~i~l~~~D~~~~~~~~~~~-~~~l~~~~~v~~iiG--~~~s~-~~~~~~~~~~~~~iP~i~~~~~ 114 (366)
T 3td9_A 44 HEEKPT----V-LGEEVELVLLDTRSEKTEAANA-AARAIDKEKVLAIIG--EVASA-HSLAIAPIAEENKVPMVTPAST 114 (366)
T ss_dssp HHHCCE----E-TTEEEEEEEEECTTCHHHHHHH-HHHHHHTSCCSEEEE--CSSHH-HHHHHHHHHHHTTCCEEESSCC
T ss_pred HHHhhh----c-CCeEEEEEEecCCCCHHHHHHH-HHHHhccCCeEEEEc--cCCch-hHHHHHHHHHhCCCeEEecCCC
Confidence 578884 4 5889999999999998665555 445555 46999999 88885 8889999999999999999998
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHH-HhcCCeEEEEEEe-cCcchhHHHHHHHHhhhccCCcceeeEEEEEEEE
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELL-KHFNYMKVIFIHS-SDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIE 158 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll-~~~~w~~v~ii~~-~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~ 158 (458)
++.+++ .+|++||+.|++..++.++++++ +++||+++++||. +++||....+.+++.+++.| +++....
T Consensus 115 ~~~~~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G------~~v~~~~- 185 (366)
T 3td9_A 115 NPLVTQ--GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSNFFINKFTELG------GQVKRVF- 185 (366)
T ss_dssp CGGGTT--TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHHHHHHHHHHHHTT------CEEEEEE-
T ss_pred CccccC--CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHHHHHHHCC------CEEEEEE-
Confidence 888865 35999999999999999999988 6689999999986 67899999999999999988 4444444
Q ss_pred eCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC------CCCCeeEEEEecC
Q psy17441 159 FEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK------NVPVGIIGLKLVN 232 (458)
Q Consensus 159 ~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~------~~~~g~~g~~~~~ 232 (458)
++.+..|+...++++++.++++|++.+...++..+++++++.|+. ..|+.++.+.... ...+|++....+.
T Consensus 186 ~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 262 (366)
T 3td9_A 186 FRSGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFT---GYILAGDGADAPELIEIGGEAVEGLLFTTHYH 262 (366)
T ss_dssp ECTTCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCC---SEEEECGGGCSTHHHHHHGGGGTTCEEEESCC
T ss_pred eCCCCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCC---ceEEeeCCcCCHHHHHHHhHHhCCeEEEEeeC
Confidence 666788999999999999999999999999999999999999997 4678777664321 2467888776543
Q ss_pred CC-----------------------chhHHHHHHHHHHHHHHHHHh
Q psy17441 233 AT-----------------------NEDAHIRDSIYVLTSALKEMN 255 (458)
Q Consensus 233 ~~-----------------------~~~~~~yDAv~~la~Al~~~~ 255 (458)
+. .+++.+|||++++++|+++.-
T Consensus 263 ~~~~~~~~~~~f~~~~~~~~g~~p~~~~~~~yda~~~~~~al~~ag 308 (366)
T 3td9_A 263 PKAASNPVAKKFVEVYKEKYGKEPAALNALGYDAYMVLLDAIERAG 308 (366)
T ss_dssp GGGCCSHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHHHHHhC
Confidence 32 246789999999999999764
No 28
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=99.91 E-value=7.9e-24 Score=207.64 Aligned_cols=232 Identities=16% Similarity=0.141 Sum_probs=184.7
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhh-cCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLI-SERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
+|+||++ |++ .|++|+++.+|+.+++..++.. +++|+ +++|.+|+| |.+|. .+.+++++++.+++|+|++.++
T Consensus 35 v~~iN~~-GGi-~Gr~ielv~~D~~~~p~~a~~~-a~~li~~~~v~~i~g--~~~s~-~~~a~~~~~~~~~vp~i~~~~~ 108 (353)
T 4gnr_A 35 VDEINAA-GGI-DGKQIEVVDKDNKSETAEAASV-TTNLVTQSKVSAVVG--PATSG-ATAAAVANATKAGVPLISPSAT 108 (353)
T ss_dssp HHHHHHT-TCB-TTBEEEEEEEECTTCHHHHHHH-HHHHHHTSCCSEEEC--CCSHH-HHHHHHHHHHHTTCCEEESSCC
T ss_pred HHHHHhc-CCC-CCeEEEEEEecCCCCHHHHHHH-HHHHHhhCCceEEec--cccCc-ccceehhhhhccCcceEeeccc
Confidence 6899955 455 5899999999999999776666 45555 578899999 88886 8999999999999999999999
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHHHhcCC-eEEEEEEec-CcchhHHHHHHHHhhhccCCcceeeEEEEEEEE
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNY-MKVIFIHSS-DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIE 158 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w-~~v~ii~~~-d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~ 158 (458)
++.+++.. +++||+.|++..+..+++.++...++ +++++++++ ++||++..+.+.+.+ | .++.....
T Consensus 109 ~~~l~~~~--~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~---g------~~vv~~~~ 177 (353)
T 4gnr_A 109 QDGLTKGQ--DYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGIAKSFRESY---K------GEIVADET 177 (353)
T ss_dssp CTTTTTTC--TTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHHHHHHHHHC---C------SEEEEEEE
T ss_pred ccccccCC--ccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHHHHHHHHHc---C------CEEEEEEe
Confidence 99887654 78999999999999999998876555 455555554 458988877776654 3 34555667
Q ss_pred eCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeecccccc-------CCCCCeeEEEEec
Q psy17441 159 FEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTA-------KNVPVGIIGLKLV 231 (458)
Q Consensus 159 ~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~-------~~~~~g~~g~~~~ 231 (458)
++.+..|+..+++++++.++|+|++.+...++..++++++++|+.. .|+.++.+... ....+|.+....+
T Consensus 178 ~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 254 (353)
T 4gnr_A 178 FVAGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDK---PIVGGDGFNGEEFVQQATAEKASNIYFISGF 254 (353)
T ss_dssp ECTTCCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCS---CEEECGGGCSHHHHHHHCTTTCCSEEEEESC
T ss_pred eCCCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCC---cEEEecccccchhhhhhhhhhhcCccccccc
Confidence 7888899999999999999999999999999999999999999975 56666655432 2346777766544
Q ss_pred CCC-----------------------chhHHHHHHHHHHHHHHHH
Q psy17441 232 NAT-----------------------NEDAHIRDSIYVLTSALKE 253 (458)
Q Consensus 232 ~~~-----------------------~~~~~~yDAv~~la~Al~~ 253 (458)
.+. .+++++|||++++++|+++
T Consensus 255 ~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~la~Ai~~ 299 (353)
T 4gnr_A 255 STTVEVSAKAKAFLDAYRAKYNEEPSTFAALAYDSVHLVANAAKG 299 (353)
T ss_dssp CSSSSCCHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHhc
Confidence 332 2578999999999999975
No 29
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=99.91 E-value=8.1e-24 Score=208.47 Aligned_cols=236 Identities=10% Similarity=0.107 Sum_probs=193.6
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhhc-CCeEEEEEeCCCCCCCchHHHHH--hhcccCCcEEeee
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLIS-ERVYAVIVSHPLTGDLSPAAVSY--TSGFYHIPVIGIS 78 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~V~aiIG~~~~~s~~~~~~~~~--i~~~~~iP~Is~~ 78 (458)
++++|++ |++ .|+++.+..+|+..++...... ++.|++ ++|.+||| |.+|. .+.++++ ++...+||+|++.
T Consensus 33 ~~~~N~~-ggi-~G~~i~l~~~D~~~~~~~~~~~-~~~l~~~~~v~~iig--~~~s~-~~~~~~~~~~~~~~~iP~v~~~ 106 (364)
T 3lop_A 33 FDWLNLN-GGI-NGETIRLVARDDEQKIEQTVRN-VRDMARVDNPVALLT--VVGTA-NVEALMREGVLAEARLPLVGPA 106 (364)
T ss_dssp HHHHHHT-TTB-TTBCEEEEEEECTTCHHHHHHH-HHHHHHHSCEEEEEC--CCCHH-HHHHHHHTTHHHHHTCCEESCS
T ss_pred HHHHHhc-CCc-CCeEEEEEEeCCCCCHHHHHHH-HHHHHhhcCcEEEEe--cCCCH-HHHhhCchhhHHhcCCcEEEcc
Confidence 5789955 455 5889999999999998665555 555666 69999999 88775 7888999 9999999999999
Q ss_pred cCCCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEE
Q psy17441 79 SRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIE 158 (458)
Q Consensus 79 a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~ 158 (458)
++++.+++ +|++||+.|++..++.++++++..+||++|++|+.+++||....+.+++.+++.|+++ .....
T Consensus 107 ~~~~~~~~---~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v------~~~~~ 177 (364)
T 3lop_A 107 TGASSMTT---DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAITGVERTLKAHALAI------TAMAS 177 (364)
T ss_dssp CCCGGGGS---CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCC------SEEEE
T ss_pred cCcHhhcc---CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHHHHHHHHHHcCCcE------EEEEE
Confidence 98887865 6999999999999999999999999999999999999999999999999999998654 23344
Q ss_pred eCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeecccccc------C-CCCCeeEEEEec
Q psy17441 159 FEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTA------K-NVPVGIIGLKLV 231 (458)
Q Consensus 159 ~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~------~-~~~~g~~g~~~~ 231 (458)
++.+..|+...++++++.++++|++.++..++..++++++++|+.. .|+..+.+... . ...+|++.....
T Consensus 178 ~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~i~~~~~~~~~~~~~~g~~~~~g~~~~~~~ 254 (364)
T 3lop_A 178 YPRNTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEA---QLLGLSSIDPGILQKVAGLDAVRGYSLALVM 254 (364)
T ss_dssp ECTTSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCC---EEEECTTSCHHHHHHHHCHHHHTTCEEEECS
T ss_pred ecCCCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCC---eEEEeccCChHHHHHHhChhhcCCeEEEEEe
Confidence 5667789999999999999999999999999999999999999975 47776654322 1 235777765421
Q ss_pred --C--C----------------------CchhHHHHHHHHHHHHHHHHHh
Q psy17441 232 --N--A----------------------TNEDAHIRDSIYVLTSALKEMN 255 (458)
Q Consensus 232 --~--~----------------------~~~~~~~yDAv~~la~Al~~~~ 255 (458)
. . ..+++.+|||++++++|+++.-
T Consensus 255 ~~~~~~~~~~~~~f~~~~~~~~~~~~~p~~~a~~~yda~~~~~~al~~ag 304 (364)
T 3lop_A 255 PNPGKSVNPVIREFNRARAAVGAKDVDLSFRAVEGFVAAKVLAEAIRRAG 304 (364)
T ss_dssp CCTTCTTSHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 1 1 1246899999999999999873
No 30
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=99.91 E-value=2.4e-23 Score=205.64 Aligned_cols=236 Identities=14% Similarity=0.073 Sum_probs=195.3
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhhc-CCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLIS-ERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
++++| |++ +|+++++..+|+..++..... .++.+++ ++|.+||| +.++. .+.++++++..++||+|++.++
T Consensus 44 ~~~~n---g~~-~g~~~~l~~~d~~~~~~~~~~-~~~~l~~~~~v~~iig--~~~s~-~~~~~~~~~~~~~iP~v~~~~~ 115 (375)
T 4evq_A 44 VQSQG---GKL-GGRSISFVKVDDESAPPKATE-LTTKLIQSEKADVLIG--TVHSG-VAMAMVKIAREDGIPTIVPNAG 115 (375)
T ss_dssp HHHTT---TEE-TTEEEEEEEEECTTCHHHHHH-HHHCCCCCSCCSEEEE--CSSHH-HHHHHHHHHHHHCCCEEESSCC
T ss_pred HHHhC---CCc-CCEEEEEEEecCCCCHHHHHH-HHHHHHhcCCceEEEc--CCccH-HHHHHHHHHHHcCceEEecCCC
Confidence 35666 456 799999999999998865444 4566766 59999999 87775 7888999999999999999999
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE 160 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~ 160 (458)
++.++++..+|++||+.|++..++.++++++.++||++|++|+.++++|....+.+++.+++.| +++.....++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G------~~v~~~~~~~ 189 (375)
T 4evq_A 116 ADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFTAGK------GEVVKDITIA 189 (375)
T ss_dssp CGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTT------CEEEEEEEEC
T ss_pred ChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcC------CeEEEEEecC
Confidence 8888877667999999999999999999999999999999999999999999999999999988 3444445566
Q ss_pred CCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC------CCCCeeEEEEecCCC
Q psy17441 161 PGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK------NVPVGIIGLKLVNAT 234 (458)
Q Consensus 161 ~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~------~~~~g~~g~~~~~~~ 234 (458)
.+..|+...++++++.++++|++.++...+..++++++++|+. ..|+.++ +.+.. ...+|++...++.+.
T Consensus 190 ~~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~---vp~~~~~-~~~~~~~~~~g~~~~g~~~~~~~~~~ 265 (375)
T 4evq_A 190 FPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLG---IPLWGPG-FLTDGVEAAAGPAGDGIKTVLHYVSD 265 (375)
T ss_dssp TTCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCC---CCEEEEG-GGTTTTHHHHGGGGTTCEEEESCCTT
T ss_pred CCCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCC---ceEEecC-cCCHHHHHhhhhhcCCeEEeeccCCC
Confidence 6778999999999999999999999999999999999999987 3455554 43221 237888887665432
Q ss_pred ----------------------chhHHHHHHHHHHHHHHHHHh
Q psy17441 235 ----------------------NEDAHIRDSIYVLTSALKEMN 255 (458)
Q Consensus 235 ----------------------~~~~~~yDAv~~la~Al~~~~ 255 (458)
.+++.+|||++++++|+++.-
T Consensus 266 ~~~~~~~~f~~~~~~~~~~~p~~~~~~~yda~~~~~~al~~~g 308 (375)
T 4evq_A 266 LDNAENQAFVKSFEAAYKIPPDVFAVQGWDAGQLLDAGVKAVG 308 (375)
T ss_dssp CCSHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 247899999999999999764
No 31
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=99.90 E-value=4.1e-23 Score=205.49 Aligned_cols=238 Identities=14% Similarity=0.064 Sum_probs=192.3
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhhc-CCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLIS-ERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
+++||+++ ++ .|+++++..+|+.+++.+.... ++.|++ ++|.+||| + +|. .+.++++++...+||+|+++++
T Consensus 35 ~~~iN~~g-gi-~G~~i~l~~~D~~~~~~~~~~~-~~~li~~~~V~~iig--~-~s~-~~~~~~~~~~~~~iP~i~~~~~ 107 (392)
T 3lkb_A 35 CKWANERK-LV-PGVVFNCVVRDDQYNNANTQRF-FEEAVDRFKIPVFLS--Y-ATG-ANLQLKPLIQELRIPTIPASMH 107 (392)
T ss_dssp HHHHHHHT-SS-TTEEEEEEEEECTTCHHHHHHH-HHHHHHTTCCSCEEE--C-CHH-HHHHHHHHHHHHTCCEEESCCC
T ss_pred HHHHHhcC-Cc-CCeEeEEEEecCCCCHHHHHHH-HHHHHhhcCcEEEEe--C-CcH-HHHHHHHHHHhCCceEEecccC
Confidence 57899554 45 4899999999999998665555 555666 49999999 6 453 7788999999999999998765
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHHHh-cCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEe
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELLKH-FNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEF 159 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~-~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~ 159 (458)
+ .+.++..+|++||+.|++..++.++++++.. +||++|++|+.+++||+...+.+++.+++.| +++.....+
T Consensus 108 ~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G------~~v~~~~~~ 180 (392)
T 3lkb_A 108 I-ELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELG------LQIVDVQEV 180 (392)
T ss_dssp G-GGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHT------CEEEEEEEC
T ss_pred h-hhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHHHHHHHHHHHcC------CeEEEEEee
Confidence 4 4555555799999999999999999998876 7999999999999999999999999999988 444445566
Q ss_pred CCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC------CCCCeeEEEEecCC
Q psy17441 160 EPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK------NVPVGIIGLKLVNA 233 (458)
Q Consensus 160 ~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~------~~~~g~~g~~~~~~ 233 (458)
+.+..|+...++++++.++++|++.+...++..++++++++|+.. .|+.++.+.+.. ...+|++....+.+
T Consensus 181 ~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 257 (392)
T 3lkb_A 181 GSGNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKM---RHLGAHYTGGPDLIALAGDAAEGFLWATSFYM 257 (392)
T ss_dssp CTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---EEEECGGGCSHHHHHHHGGGGTTCEEEESBCC
T ss_pred CCCCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---eEEEecCcccHHHHHhhhhhhcCeEEEEeecC
Confidence 667789999999999999999999999999999999999999973 677776543221 23788887765532
Q ss_pred C----------------------ch----hHHHHHHHHHHHHHHHHHhh
Q psy17441 234 T----------------------NE----DAHIRDSIYVLTSALKEMNQ 256 (458)
Q Consensus 234 ~----------------------~~----~~~~yDAv~~la~Al~~~~~ 256 (458)
. .. ++.+|||++++++|+++...
T Consensus 258 ~~~~~~~~~f~~~~~~~~~~~p~~~~~~~~~~~yda~~~~~~al~~ag~ 306 (392)
T 3lkb_A 258 AHEDTPGIRLQKEIGRKYGRPENFIESVNYTNGMLAAAIAVEAIRRAQE 306 (392)
T ss_dssp TTSCCHHHHHHHHHHHHTTCCHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHhCCCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 1 02 57899999999999998754
No 32
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=99.90 E-value=8.3e-23 Score=203.34 Aligned_cols=235 Identities=14% Similarity=0.108 Sum_probs=190.8
Q ss_pred cccccccccccccce--EEEEeeeeeCCCHHHHHHHHHHHhh-cCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeee
Q psy17441 2 FQHINFDIQYVNKGV--TFSATGIQMDPNPILTALSVCKFLI-SERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGIS 78 (458)
Q Consensus 2 v~eIN~~~~~l~~~~--~l~~~~~~~~~~~~~~~~~~~~~l~-~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~ 78 (458)
+++||+++|++.+|+ ++++..+|+.+++...... ++.|+ +++|.+||| + +|. .+.++++++...+||+|++.
T Consensus 32 ~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~-~~~li~~~~V~~iiG--~-~s~-~~~a~~~~~~~~~iP~i~~~ 106 (391)
T 3eaf_A 32 FKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEY-YREFRDRYGVIAIIG--W-GTA-DTEKLSDQVDTDKITYISAS 106 (391)
T ss_dssp HHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHH-HHHHHHTTCCSEEEE--C-CHH-HHHHHHHHHHHHTCEEEESC
T ss_pred HHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHH-HHHHHhhcCcEEEEE--c-CcH-HHHHHHHHHhhcCCeEEecc
Confidence 578997766622577 9999999999998665444 56676 789999999 6 454 78899999999999999987
Q ss_pred cCCCCCCCCccccceeecCCCchhHHHHHHHHHHh-cCCeEEEEEEe-cCcchhHHHHHHHHhhhccCCcceeeEEEEEE
Q psy17441 79 SRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKH-FNYMKVIFIHS-SDTDGRALLGRFQTTSQNQEDDVEIKVQVEAV 156 (458)
Q Consensus 79 a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~-~~w~~v~ii~~-~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~ 156 (458)
++++ ++ .+|++||+.|++..++.++++++.. +||++|++|+. +++||....+.+++.+++.| +++...
T Consensus 107 ~~~~-~~---~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~~~~~~~~~l~~~G------~~v~~~ 176 (391)
T 3eaf_A 107 YSAK-LL---VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRSPIGAIKKAAPSLG------LQVVGD 176 (391)
T ss_dssp CCGG-GT---TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHTTHHHHHHHTGGGT------EEEEEE
T ss_pred cchh-hc---CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHHHHHHHHHHHHHcC------Cceeee
Confidence 7654 43 4699999999999999999998877 79999999999 89999999999999999988 555556
Q ss_pred EEeCCCcccHHHHHHH--HHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC------CCCCe-eEE
Q psy17441 157 IEFEPGLTTFKDQLYE--MKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK------NVPVG-IIG 227 (458)
Q Consensus 157 ~~~~~~~~d~~~~l~~--ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~------~~~~g-~~g 227 (458)
..++.+..|+...+++ +++.++++|++.++..++..++++++++|+.. .++.+++..+.. ...+| ++.
T Consensus 177 ~~~~~~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~g~~~~g~~~~ 253 (391)
T 3eaf_A 177 YDLPLRATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDA---FLLTNVWGFDERSPQLIGEGGYGKVFG 253 (391)
T ss_dssp EECCTTCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCC---EEEECGGGCSTTHHHHHCGGGTTSEEE
T ss_pred eccCCCCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCc---eEEEeccCCCHHHHHhhhhhccCcEEE
Confidence 6677778899999999 99999999999999999999999999999974 456555432221 23788 777
Q ss_pred EEecC-----CC----------------------chhHHHHHHHHHHHHHHHHH
Q psy17441 228 LKLVN-----AT----------------------NEDAHIRDSIYVLTSALKEM 254 (458)
Q Consensus 228 ~~~~~-----~~----------------------~~~~~~yDAv~~la~Al~~~ 254 (458)
..++. .+ .+++.+|||++++++|+++.
T Consensus 254 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~yda~~~l~~Al~~a 307 (391)
T 3eaf_A 254 ISPFIYPMFGQDVEGIQTIFEAARMNGVSEDQINLRVVQGFVNVWLLIKAIESV 307 (391)
T ss_dssp EESBCCGGGCTTCHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHHTTS
T ss_pred EEEecCcccCCCCchhHHHHHHHHHhCCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 66543 11 14678999999999999876
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=99.88 E-value=1.4e-21 Score=193.58 Aligned_cols=230 Identities=13% Similarity=0.099 Sum_probs=187.0
Q ss_pred cceEEEEeeeeeCCCHHHHHHHHHHHhhc-CCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCC-Ccccc
Q psy17441 14 KGVTFSATGIQMDPNPILTALSVCKFLIS-ERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSD-KNIHV 91 (458)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~-~~~~p 91 (458)
.|+++++..+|+..++.+.... ++.|++ ++|.+||| |.++. .+.++.+++...+||+|++.++++.+++ ...+|
T Consensus 59 ~G~~i~l~~~d~~~~~~~~~~~-~~~l~~~~~v~~iig--~~~s~-~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~ 134 (386)
T 3sg0_A 59 GGEKVTYFALDDESDPTKAAQN-ARKLLSEEKVDVLIG--SSLTP-VSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRK 134 (386)
T ss_dssp TTEEEEEEEEECTTCHHHHHHH-HHHHHHTSCCSEEEC--CSSHH-HHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGG
T ss_pred CCEEEEEEEecCCCCHHHHHHH-HHHHHhhcCceEEEC--CCCch-hHHHHHHHHHhcCCeEEEecCCCccccccCCCCC
Confidence 3678888889999988665555 555666 48999999 88775 7888999999999999999988877764 44579
Q ss_pred ceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHH
Q psy17441 92 SFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLY 171 (458)
Q Consensus 92 ~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~ 171 (458)
++||+.|++..++.++++++..+||++|++|+.++++|+...+.+++.+++.|+ ++.....++.+..|+...++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~------~v~~~~~~~~~~~d~~~~~~ 208 (386)
T 3sg0_A 135 WVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGF------ELTTHEVYARSDASVTGQVL 208 (386)
T ss_dssp GEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTC------EECCCEEECTTCSCCHHHHH
T ss_pred cEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCC------EEEEEEeeCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999884 33333445667789999999
Q ss_pred HHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC------CCCCeeEEEEec----------C---
Q psy17441 172 EMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK------NVPVGIIGLKLV----------N--- 232 (458)
Q Consensus 172 ~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~------~~~~g~~g~~~~----------~--- 232 (458)
++++.++++|++.++..++..+++++++.|+.. .++.++++.+.. ...+|++....+ .
T Consensus 209 ~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 285 (386)
T 3sg0_A 209 KIIATKPDAVFIASAGTPAVLPQKALRERGFKG---AIYQTHGVATEEFIKLGGKDVEGAIFAGEAFSGAEDMPADSPFR 285 (386)
T ss_dssp HHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCS---EEECCGGGCSHHHHHHHGGGGTTCEEEECHHHHGGGSCTTCHHH
T ss_pred HHHhcCCCEEEEecCcchHHHHHHHHHHcCCCC---cEEeccccCCHHHHHhhhhhcCCeEEecccccccccCCCCCcch
Confidence 999999999999999889999999999999984 467666654321 236777765421 0
Q ss_pred ------------------CCchhHHHHHHHHHHHHHHHHHhh
Q psy17441 233 ------------------ATNEDAHIRDSIYVLTSALKEMNQ 256 (458)
Q Consensus 233 ------------------~~~~~~~~yDAv~~la~Al~~~~~ 256 (458)
+..+++.+|||++++++|+++..+
T Consensus 286 ~~~~~f~~~~~~~~~~~~p~~~~~~~yda~~~~~~al~~a~~ 327 (386)
T 3sg0_A 286 KVKARFVDAYKAANGGAAPTIFGVHLWDSMTLVENAIPAALK 327 (386)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHhhh
Confidence 112578999999999999998853
No 34
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.87 E-value=1.8e-20 Score=183.77 Aligned_cols=226 Identities=15% Similarity=0.112 Sum_probs=182.5
Q ss_pred cceEEEEeeeeeCCCHHHHHHHHHHHhhcC-CeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccc
Q psy17441 14 KGVTFSATGIQMDPNPILTALSVCKFLISE-RVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVS 92 (458)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~ 92 (458)
.|+++.+..+|+.+++...... ++.|+++ +|.+||| +.++. .+.++.+++...++|+|++.++ + + ....+|+
T Consensus 39 ~g~~i~l~~~d~~~~~~~~~~~-~~~l~~~~~v~~iig--~~~s~-~~~~~~~~~~~~~ip~v~~~~~-~-~-~~~~~~~ 111 (362)
T 3snr_A 39 SGHPIKIIVLDDGGDPTAATTN-ARRFVTESKADVIMG--SSVTP-PSVAISNVANEAQIPHIALAPL-P-I-TPERAKW 111 (362)
T ss_dssp TTEEEEEEEEECTTCHHHHHHH-HHHHHHTSCCSEEEE--CSSHH-HHHHHHHHHHHHTCCEEESSCC-C-C-CTTTTTT
T ss_pred CCeEEEEEEecCCCCHHHHHHH-HHHHHhccCceEEEc--CCCcH-HHHHHHHHHHHcCccEEEecCC-c-c-ccCCCCc
Confidence 3678888899999888665555 4556565 8999999 87775 7788899999999999999877 4 3 2344699
Q ss_pred eeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHH
Q psy17441 93 FLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYE 172 (458)
Q Consensus 93 ~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ 172 (458)
+||+.|++..++.++++++..+||+++++|+.++++|+...+.+++.+++.|+ ++.....++.+..++...+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~------~v~~~~~~~~~~~~~~~~~~~ 185 (362)
T 3snr_A 112 SVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKKQGEAMGL------KIVGEERFARPDTSVAGQALK 185 (362)
T ss_dssp EEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTC------EEEEEEEECTTCSCCHHHHHH
T ss_pred EEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCC------EEEEEeecCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999883 444445566677889999999
Q ss_pred HHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC------CCCCeeEEEEec----------CC---
Q psy17441 173 MKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK------NVPVGIIGLKLV----------NA--- 233 (458)
Q Consensus 173 ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~------~~~~g~~g~~~~----------~~--- 233 (458)
+++.++++|++.+....+..++++++++|+.. .++...++.+.. ...+|++....+ .+
T Consensus 186 l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---p~i~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 262 (362)
T 3snr_A 186 LVAANPDAILVGASGTAAALPQTTLRERGYNG---LIYQTHGAASMDFIRIAGKSAEGVLMASGPVMDPEGQDDTALTKK 262 (362)
T ss_dssp HHHHCCSEEEEECCHHHHHHHHHHHHHTTCCS---EEEECGGGCSHHHHHHHGGGGTTCEEEECGGGCSTTSCTTCTTHH
T ss_pred HHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---cEEeccCcCcHHHHHHhHHHhCCCEEecccccccccCCCcCcccH
Confidence 99999999999998999999999999999975 456666554321 236777765421 11
Q ss_pred ------------------CchhHHHHHHHHHHHHHHHHHh
Q psy17441 234 ------------------TNEDAHIRDSIYVLTSALKEMN 255 (458)
Q Consensus 234 ------------------~~~~~~~yDAv~~la~Al~~~~ 255 (458)
..+++.+|||++++++|+++..
T Consensus 263 ~~~~f~~~~~~~~~~~~p~~~~~~~yda~~~~~~al~~a~ 302 (362)
T 3snr_A 263 PGMALVKVYEEKYGPSSRSQFAGHSYDAFKVLERVVPVAL 302 (362)
T ss_dssp HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCchhHhHHHHHHHHHHHHHHhh
Confidence 1247899999999999999874
No 35
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=99.85 E-value=2.3e-20 Score=185.19 Aligned_cols=237 Identities=11% Similarity=0.001 Sum_probs=181.2
Q ss_pred cccccccccccccceEEEEeeeeeCCCHHHHHHHHHHHhhc-CCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC
Q psy17441 2 FQHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLIS-ERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR 80 (458)
Q Consensus 2 v~eIN~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~ 80 (458)
++++|+++| + .|+++.+..+|+..++..... .++.|++ ++|.+||| +.++. .+.++.+++...++|+|++.+.
T Consensus 35 ~~~~N~~gg-i-~G~~l~l~~~d~~~~~~~~~~-~~~~l~~~~~v~~iig--~~~s~-~~~~~~~~~~~~~iP~v~~~~~ 108 (385)
T 1pea_A 35 VEQLNREGG-V-GGRPIETLSQDPGGDPDRYRL-CAEDFIRNRGVRFLVG--CYMSH-TRKAVMPVVERADALLCYPTPY 108 (385)
T ss_dssp HHHHHTTTT-B-TTBCCEEEEECCTTCHHHHHH-HHHHHHHTTCCCEEEE--CCSHH-HHHHHHHHHHHTTCEEEECSCC
T ss_pred HHHhccccC-C-CCeEEEEEEeCCCCCHHHHHH-HHHHHHhhCCcEEEEC--CCchH-HHHHHHHHHHhcCceEEECCcc
Confidence 467895544 5 478888888888888755444 4566665 89999999 87664 6678889999999999998764
Q ss_pred CCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC
Q psy17441 81 DSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE 160 (458)
Q Consensus 81 ~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~ 160 (458)
+. ...++++||+.+++..++..+++++...+|+++++|+.++.++....+.+++.+++.|++ +.....++
T Consensus 109 ~~----~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~------v~~~~~~~ 178 (385)
T 1pea_A 109 EG----FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGT------VLEEIYIP 178 (385)
T ss_dssp CC----CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHHHHHHHHHTTCE------EEEEEEEC
T ss_pred cC----ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHHHHHHHHHcCCE------EEEEEeec
Confidence 21 223578999999999999999999999999999999998889999999999999998843 33333344
Q ss_pred C--CcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC------CCCCeeEEEEecC
Q psy17441 161 P--GLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK------NVPVGIIGLKLVN 232 (458)
Q Consensus 161 ~--~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~------~~~~g~~g~~~~~ 232 (458)
. +..++...++++++.++++|++.++...+..++++++++|+.++...++ +..+.... ...+|+++..++.
T Consensus 179 ~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~ 257 (385)
T 1pea_A 179 LYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIA-SLTTSEAEVAKMESDVAEGQVVVAPYF 257 (385)
T ss_dssp SSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEE-ESSCCHHHHTTSCHHHHTTCEEEESCC
T ss_pred CCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEE-ecccchHHHHhcCchhhCCeEEecccc
Confidence 3 5678889999999889999999888888999999999999985433444 43332211 1257777766443
Q ss_pred CC------------------------chhHHHHHHHHHHHHHHHHHh
Q psy17441 233 AT------------------------NEDAHIRDSIYVLTSALKEMN 255 (458)
Q Consensus 233 ~~------------------------~~~~~~yDAv~~la~Al~~~~ 255 (458)
+. .+++.+|||++++++|+++.-
T Consensus 258 ~~~~~~~~~~f~~~~~~~~g~~~~~~~~~~~~yda~~~~~~Al~~ag 304 (385)
T 1pea_A 258 SSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAG 304 (385)
T ss_dssp TTCSSHHHHHHHHHHHTTSCTTCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 21 146789999999999999864
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.74 E-value=8.6e-18 Score=162.35 Aligned_cols=220 Identities=9% Similarity=0.034 Sum_probs=165.8
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhh-cccCCcEEeeecCCCCCCCCccccce
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTS-GFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~-~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
|.++++...|+.+++ +..+.+++++++|.+||| |.+|+ .+.++++++ ...+||+|++++++. ... ..+.|+
T Consensus 30 G~~i~l~~~D~~~~~---a~~~~~~l~~~~v~~IiG--p~~s~-~~~a~~~~~~~~~~vp~i~~~~~~~-~~~-~~~~~~ 101 (325)
T 2h4a_A 30 NSTIPVQVFDTSMNS---VQDIIAQAKQAGIKTLVG--PLLKQ-NLDVILADPAQIQGMDVLALNATPN-SRA-IPQLCY 101 (325)
T ss_dssp TCCSCEEEEETTTSC---HHHHHHHHHHTTCCEEEC--CCSHH-HHHHHHHCGGGGTTCEEEESCCCSS-CCC-CTTEEE
T ss_pred CCCceEEEEECCCCh---HHHHHHHHHHCCCCEEEe--eCCHH-HHHHHHhhhhccCCCcEEECCCCcc-ccC-CCCeEE
Confidence 566777777888876 455567777899999999 99986 888999998 789999999887643 222 223677
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEM 173 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~i 173 (458)
||+.| .+++.++++.+...|.+++++|+.+++||+...+.|++.+++.|+.+ ...+.++.. .|+...|+++
T Consensus 102 f~~~~--~~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~~~~Gg~v------v~~~~y~~~-~d~~~~l~~i 172 (325)
T 2h4a_A 102 YGLSP--EDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTD------ANIRYYNLP-ADVTYFVQEN 172 (325)
T ss_dssp CCCCH--HHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSC------CEEEEESST-THHHHHHHHS
T ss_pred EECCH--HHHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHHHHcCCCc------ceeEecCCH-HHHHHHHHhc
Confidence 77654 45789999999888999999999999999999999999999988544 334556554 7999999988
Q ss_pred HhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeecccc--ccCC------CCCeeEEEE-ecCCC----------
Q psy17441 174 KNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQAL--TAKN------VPVGIIGLK-LVNAT---------- 234 (458)
Q Consensus 174 k~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~--~~~~------~~~g~~g~~-~~~~~---------- 234 (458)
..++|+|++.++..++..+.+++++.|.. -..+.++.+. +... -++|++... ++...
T Consensus 173 -~~~pDaV~~~~~~~~~~~i~~~~~~~g~~---~pl~~~~~~~~~s~~~~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~ 248 (325)
T 2h4a_A 173 -NSNTTALYAVASPTELAEXKGYLTNIVPN---LAIYASSRASASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLA 248 (325)
T ss_dssp -TTCCCEEEECCCHHHHHHHHHHHTTTCTT---CEEEECGGGCCHHHHTCHHHHHHTTTCEEEECGGGSCCCSHHHHHHH
T ss_pred -CCCCCEEEEeCCHHHHhhhhhhHhhcCCC---CCEEEeccccccCCCCCchhhhhcCCcEEEccccccCCCcHHHHHHH
Confidence 47899999999999999888888877554 4677777776 3221 267876544 22211
Q ss_pred ----------chhHHHHHHHHHHHHHHHHHhh
Q psy17441 235 ----------NEDAHIRDSIYVLTSALKEMNQ 256 (458)
Q Consensus 235 ----------~~~~~~yDAv~~la~Al~~~~~ 256 (458)
...+++|||+.++++ +.++.+
T Consensus 249 ~~~~~~~~~~rl~AlgyDA~~l~~~-l~~l~~ 279 (325)
T 2h4a_A 249 KSTGGEYQLMRLYAMGADAWLLINQ-FNELRQ 279 (325)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHT-HHHHHH
T ss_pred hccCCCcchHHHHHHHHHHHHHHHH-HHHHhh
Confidence 125899999998655 444443
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.68 E-value=3e-16 Score=152.05 Aligned_cols=218 Identities=7% Similarity=-0.011 Sum_probs=159.9
Q ss_pred cceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHh-hcccCCcEEeeecCCCCCCCCccccc
Q psy17441 14 KGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYT-SGFYHIPVIGISSRDSAFSDKNIHVS 92 (458)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i-~~~~~iP~Is~~a~~~~ls~~~~~p~ 92 (458)
.|.++++...|+.+++.++ +.+.+.+++|.+||| |.+|+ .+.++++. .+..++|+++.++++. .. ..++
T Consensus 31 ~g~~i~l~~~D~~~~~~~a---a~~~~~~~~v~~iiG--p~~s~-~~~a~~~~~~~~~~v~~~~~~~~~~-~~---~~~~ 100 (327)
T 3ckm_A 31 GNSTIPVQVFDTSMNSVQD---IIAQAKQAGIKTLVG--PLLKQ-NLDVILADPAQIQGMDVLALNATPN-SR---AIPQ 100 (327)
T ss_dssp TTCCSCEEEEETTTSCHHH---HHHHHHHTTCCEEEC--CCSHH-HHHHHHHCGGGGTTCEEEESCCCTT-CC---CCTT
T ss_pred CCCCceEEEEeCCCCHHHH---HHHHHHHcCCeEEEE--ccccc-cchhhHHHHHhccCceEeccCcCcc-cc---cCCC
Confidence 3555667777888888554 345566799999999 88875 65665554 4555666666554433 22 2378
Q ss_pred eeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHH
Q psy17441 93 FLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYE 172 (458)
Q Consensus 93 ~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ 172 (458)
+||+.+++..++.++++++...|++++++++.+++||+...+.|++.+++.|+.| .....++. .+....+.+
T Consensus 101 ~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~~~~~Gg~v------v~~~~~~~--~~~~~~~~~ 172 (327)
T 3ckm_A 101 LCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTD------ANIRYYNL--PADVTYFVQ 172 (327)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSC------CEEEEESS--TTHHHHHHH
T ss_pred eEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHHHHHCCCeE------EEEEECCC--CchhhHHHH
Confidence 8999999999999999999999999999999999999999999999999998554 33444543 344566778
Q ss_pred HHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC--C------CCCeeEEEEe-cCC--C-------
Q psy17441 173 MKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK--N------VPVGIIGLKL-VNA--T------- 234 (458)
Q Consensus 173 ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~--~------~~~g~~g~~~-~~~--~------- 234 (458)
++..++|+|++.+.+.++..++++++++|+. ..++.++.+.... . -.+|++.... +.. .
T Consensus 173 ~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f 249 (327)
T 3ckm_A 173 ENNSNTTALYAVASPTELAEMKGYLTNIVPN---LAIYASSRASASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKL 249 (327)
T ss_dssp HSCTTCCEEEECCCHHHHHHHHHHHTTTCTT---CEEEECGGGCCHHHHTCHHHHHHTTTCEEEECGGGGCCCSHHHHHH
T ss_pred HhccCCcEEEEEcCHHHHHHHHHHHHhhhcc---CCEEeeeccccccchhcchhhhhcCCeEEEcccccCCCCCHHHHHH
Confidence 8899999999999999999999999999987 4677777654321 1 1456554432 211 1
Q ss_pred -----------chhHHHHHHHHHHHHHHH
Q psy17441 235 -----------NEDAHIRDSIYVLTSALK 252 (458)
Q Consensus 235 -----------~~~~~~yDAv~~la~Al~ 252 (458)
...+++|||+.+++.+.+
T Consensus 250 ~~~~~~~~~~~~~~AlgyDA~~l~~~l~~ 278 (327)
T 3ckm_A 250 AKSTGGEYQLMRLYAMGADAWLLINQFNE 278 (327)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHH
Confidence 136789999988765543
No 38
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=98.52 E-value=1.2e-07 Score=77.09 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhc
Q psy17441 303 SVHVVALVLYLLDRFSPFGRFRLSNSDNTEEDALNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASY 382 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~y 382 (458)
.+++.+.+++.+|+..| ++...++.+++||++.++++.|++|..|.+..||+++.+|+++++.+++..
T Consensus 39 ~~~~~a~~~~~~E~~~~------------~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~ 106 (122)
T 2ih3_C 39 VLLAGSYLAVLAERGAP------------GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLV 106 (122)
T ss_dssp HHHHHHHHHHHHHTTST------------TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhheeeecCC------------CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 34556777888887321 223457999999999999999999999999999999999999999999999
Q ss_pred ccceeEEeee
Q psy17441 383 TANLAAFLVL 392 (458)
Q Consensus 383 ta~l~s~lt~ 392 (458)
++++++.++.
T Consensus 107 ~~~i~~~~~~ 116 (122)
T 2ih3_C 107 TAALATWFVG 116 (122)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887753
No 39
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.48 E-value=7.9e-08 Score=75.76 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhc
Q psy17441 303 SVHVVALVLYLLDRFSPFGRFRLSNSDNTEEDALNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASY 382 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~y 382 (458)
.+++.+.+++.+|+..| ++...++.+++||++.++++.|++|..|.+..||+++.+|+++++.+++..
T Consensus 18 ~~~~~a~~~~~~E~~~~------------~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~ 85 (103)
T 2k1e_A 18 VLEEASKKAVEAERGAP------------GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALV 85 (103)
T ss_dssp HHHHHHHHHHHHHTTST------------TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhccCCC------------CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 45567778888887432 122347899999999999999999999999999999999999999999999
Q ss_pred ccceeEEeeec
Q psy17441 383 TANLAAFLVLE 393 (458)
Q Consensus 383 ta~l~s~lt~~ 393 (458)
++.+++.++..
T Consensus 86 ~~~i~~~~~~~ 96 (103)
T 2k1e_A 86 TAALATDFVRR 96 (103)
T ss_dssp HHHHHTTGGGH
T ss_pred HHHHHHHHHHH
Confidence 99998877543
No 40
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=98.38 E-value=4.8e-07 Score=76.56 Aligned_cols=80 Identities=16% Similarity=0.232 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhc
Q psy17441 303 SVHVVALVLYLLDRFSPFGRFRLSNSDNTEEDALNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASY 382 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~y 382 (458)
.+++.+.+++.+|+..| ++...++.+++||++.++++.|++|..|.+..||+++++|+++++.+++..
T Consensus 62 ~i~~~a~~~~~~E~~~~------------~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~ 129 (155)
T 2a9h_A 62 VLLAGSYLAVLAERGAP------------GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLV 129 (155)
T ss_dssp HHHHHHHHHHHHHTTSS------------CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC------------CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 34556667888887431 122347899999999999999999999999999999999999999999999
Q ss_pred ccceeEEeeecc
Q psy17441 383 TANLAAFLVLER 394 (458)
Q Consensus 383 ta~l~s~lt~~~ 394 (458)
++.+++.++...
T Consensus 130 ~~~i~~~~~~~~ 141 (155)
T 2a9h_A 130 FAAVATWFVGRE 141 (155)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHHHHH
Confidence 999999886554
No 41
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=98.32 E-value=6.7e-07 Score=74.58 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcc
Q psy17441 304 VHVVALVLYLLDRFSPFGRFRLSNSDNTEEDALNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYT 383 (458)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yt 383 (458)
+++.+.+++.+|+.. +.+...++.+++||++.++++.|+||..|.+..||+++++|+++++.+++..+
T Consensus 19 ~~~~a~~~~~~e~~~------------~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~ 86 (139)
T 3eff_K 19 LLAGSYLAVLAERGA------------PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVT 86 (139)
T ss_dssp HHHHHHHHHHTTSSC------------TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC------------CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666532 12234578999999999999999999999999999999999999999999999
Q ss_pred cceeEEe
Q psy17441 384 ANLAAFL 390 (458)
Q Consensus 384 a~l~s~l 390 (458)
+.+++.+
T Consensus 87 ~~i~~~~ 93 (139)
T 3eff_K 87 AALATWF 93 (139)
T ss_dssp HHHTTTT
T ss_pred HHHHHHH
Confidence 9998776
No 42
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=98.28 E-value=9.2e-07 Score=73.38 Aligned_cols=56 Identities=21% Similarity=0.400 Sum_probs=53.0
Q ss_pred ccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcccceeEEeee
Q psy17441 337 NLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVL 392 (458)
Q Consensus 337 ~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yta~l~s~lt~ 392 (458)
++.+++||++.++++-|+||..|.+..||+++++|+++++.+++..++.+++.+..
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~ 98 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRC 98 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999887744
No 43
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.07 E-value=7.1e-06 Score=61.44 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=49.4
Q ss_pred ccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcccceeEE
Q psy17441 337 NLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAF 389 (458)
Q Consensus 337 ~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yta~l~s~ 389 (458)
++.+++||+..++++.|++|..|++..||+++..|.++++.+++...+++++.
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~ 80 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEF 80 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999988887654
No 44
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.04 E-value=3.7e-06 Score=65.17 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=54.3
Q ss_pred ccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcccceeEEeeeccC
Q psy17441 337 NLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERP 395 (458)
Q Consensus 337 ~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yta~l~s~lt~~~~ 395 (458)
++.+++||+..++++.|++|..|.+..||+++.+|.++++.+++..++++++.+..++.
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~ 90 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 90 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 68999999999999999999999999999999999999999999999999887765543
No 45
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=98.00 E-value=8e-06 Score=65.31 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=52.3
Q ss_pred ccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcccceeEEeeec
Q psy17441 337 NLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLE 393 (458)
Q Consensus 337 ~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yta~l~s~lt~~ 393 (458)
++.+++||++.++++.|++|..|.+..||+++.+|.++++.+++..++++++.++..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999988776443
No 46
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=97.86 E-value=0.001 Score=62.38 Aligned_cols=216 Identities=12% Similarity=0.030 Sum_probs=126.3
Q ss_pred ceEEEEeeee-eCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 15 GVTFSATGIQ-MDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 15 ~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
|+.+.+.... +..++ +......+.+...++.+||-. +.... ........+...++|+|......+. .. .+
T Consensus 40 g~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~vdgiii~-~~~~~-~~~~~~~~~~~~~iPvV~~~~~~~~---~~---~~ 110 (304)
T 3gbv_A 40 DFNISANITHYDPYDY-NSFVATSQAVIEEQPDGVMFA-PTVPQ-YTKGFTDALNELGIPYIYIDSQIKD---AP---PL 110 (304)
T ss_dssp GGCEEEEEEEECSSCH-HHHHHHHHHHHTTCCSEEEEC-CSSGG-GTHHHHHHHHHHTCCEEEESSCCTT---SC---CS
T ss_pred hCCeEEEEEcCCCCCH-HHHHHHHHHHHhcCCCEEEEC-CCChH-HHHHHHHHHHHCCCeEEEEeCCCCC---CC---ce
Confidence 5566665443 33344 334455666778899999862 22221 2234455566779999988764321 11 12
Q ss_pred eecCCCchhHHHHHHHHHHhcCC--eEEEEEEec------CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCccc
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNY--MKVIFIHSS------DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTT 165 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w--~~v~ii~~~------d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d 165 (458)
-.+.+.+...+..+++.+...|. ++++++... ........+.+.+.+++.|+.+ .+.....-..+...
T Consensus 111 ~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~----~~~~~~~~~~~~~~ 186 (304)
T 3gbv_A 111 AFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPAC----NILELNLHADLNIE 186 (304)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTS----EEEEEEEESSCSSC
T ss_pred EEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCc----EEEEeeecCCCHHH
Confidence 23346666677788888888888 999999732 2345677899999999988554 22222222223344
Q ss_pred HHHHHHHHHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccc-cCCCCCeeE--EEEecCCCchhHHH
Q psy17441 166 FKDQLYEMKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALT-AKNVPVGII--GLKLVNATNEDAHI 240 (458)
Q Consensus 166 ~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~-~~~~~~g~~--g~~~~~~~~~~~~~ 240 (458)
....++++.+. .+++|++..+. +..+++++++.|+ ++...+..|.... ...+..|.+ .+.. .....+
T Consensus 187 ~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~~~g~--~di~vig~d~~~~~~~~~~~~~~~~tv~~----~~~~~g 258 (304)
T 3gbv_A 187 DSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQQRRK--SDFSLIGYDLLERNVTCLKEGTVSFLIAQ----QPELQG 258 (304)
T ss_dssp HHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHHHTTC--CSCEEEEESCCHHHHHHHHHTSEEEEEEC----CHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHHHcCC--CCcEEEEeCCCHHHHHHHHcCceEEEEEe----CHHHHH
Confidence 45555555443 46777665544 7789999999998 3345555554332 112233444 2322 234556
Q ss_pred HHHHHHHHHHH
Q psy17441 241 RDSIYVLTSAL 251 (458)
Q Consensus 241 yDAv~~la~Al 251 (458)
+.|+.++...+
T Consensus 259 ~~av~~l~~~i 269 (304)
T 3gbv_A 259 FNSIKTLCDHL 269 (304)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66766665554
No 47
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=97.85 E-value=0.0038 Score=57.99 Aligned_cols=217 Identities=9% Similarity=-0.010 Sum_probs=122.1
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+...++..++ +......+.+.++++.+||. ..............+...++|+|......+ +. +.+.
T Consensus 37 g~~~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgii~--~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~~---~~~~ 107 (289)
T 3brs_A 37 EIKLEFMAPEKEEDY-LVQNELIEEAIKRKPDVILL--AAADYEKTYDAAKEIKDAGIKLIVIDSGMK---QD---IADI 107 (289)
T ss_dssp TCEEEECCCSSTTCH-HHHHHHHHHHHHTCCSEEEE--CCSCTTTTHHHHTTTGGGTCEEEEESSCCS---SC---CCSE
T ss_pred CCEEEEecCCCCCCH-HHHHHHHHHHHHhCCCEEEE--eCCChHHhHHHHHHHHHCCCcEEEECCCCC---CC---cceE
Confidence 566655443323444 33344456677889999997 322211212344455668999998865322 11 1233
Q ss_pred ecCCCchhHHHHHHHHHHh-cC-CeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKH-FN-YMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQL 170 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~-~~-w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l 170 (458)
.+.+.+...+..+++.+.. .| .++++++.... .......+.+++.+++.|+.+ ......+.+..+....+
T Consensus 108 ~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~------~~~~~~~~~~~~~~~~~ 181 (289)
T 3brs_A 108 TVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKI------EAIYYCDSNYDKAYDGT 181 (289)
T ss_dssp EEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGE------EEEEECTTCHHHHHHHH
T ss_pred EEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcE------EeeecCCCCHHHHHHHH
Confidence 4556666677777787766 46 99999998653 345677889999999887322 11122222333445556
Q ss_pred HHHHhcc--CeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccCCCCC-eeE--EEEecCCCchhHHHHHHHH
Q psy17441 171 YEMKNAQ--ARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKNVPV-GII--GLKLVNATNEDAHIRDSIY 245 (458)
Q Consensus 171 ~~ik~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~~~~~-g~~--g~~~~~~~~~~~~~yDAv~ 245 (458)
+++.+.. +++|+ +.+...+..+++++++.|+. ++-..+..|.......+.. +.+ .+.. .....++-|+.
T Consensus 182 ~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~-~di~vvg~d~~~~~~~~~~~~~l~ttv~~----~~~~~g~~a~~ 255 (289)
T 3brs_A 182 VELLTKYPDISVMV-GLNQYSATGAARAIKDMSLE-AKVKLVCIDSSMEQIQYLEEGIFEAMVVQ----KPFNIGYLGVE 255 (289)
T ss_dssp HHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEEESCSCC-----CCSCCEEEEC----CHHHHHHHHHH
T ss_pred HHHHHhCCCceEEE-ECCCcchHHHHHHHHhcCCC-CCEEEEEECCCHHHHHHHHCCceEEEEec----ChHHHHHHHHH
Confidence 6655444 45544 34556788899999999987 3344444443332122222 322 2221 23456677776
Q ss_pred HHHHHHH
Q psy17441 246 VLTSALK 252 (458)
Q Consensus 246 ~la~Al~ 252 (458)
++...++
T Consensus 256 ~l~~~i~ 262 (289)
T 3brs_A 256 KALKLLK 262 (289)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6655553
No 48
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=97.84 E-value=2.6e-05 Score=65.53 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=51.4
Q ss_pred ccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcccceeEEee
Q psy17441 337 NLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 391 (458)
Q Consensus 337 ~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yta~l~s~lt 391 (458)
++.+++||++.++++.|+||..|.+..||+++.+|.++++.+++...+++++.+.
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 106 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQ 106 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999998876653
No 49
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=97.78 E-value=2.3e-05 Score=70.77 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=52.6
Q ss_pred ccccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcccceeEEee
Q psy17441 335 ALNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 391 (458)
Q Consensus 335 ~~~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yta~l~s~lt 391 (458)
..++.+++||++.++++.|+||..|.+..||+++.+++++++.+.+..++++++.+.
T Consensus 163 ~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~ 219 (223)
T 1orq_C 163 IKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQ 219 (223)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999999999999877653
No 50
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=97.76 E-value=0.0058 Score=56.07 Aligned_cols=215 Identities=11% Similarity=0.054 Sum_probs=125.6
Q ss_pred cceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 14 KGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
.|+++.+.. .+.++ +......+.+.+.++.+||-. +... ........+...++|+|..+...+ +.. .+
T Consensus 31 ~g~~~~~~~--~~~~~-~~~~~~~~~l~~~~vdgiIi~-~~~~--~~~~~~~~~~~~~iPvV~~~~~~~---~~~-~~-- 98 (272)
T 3o74_A 31 RGYQLLIAS--SDDQP-DSERQLQQLFRARRCDALFVA-SCLP--PEDDSYRELQDKGLPVIAIDRRLD---PAH-FC-- 98 (272)
T ss_dssp TTCEEEEEE--CTTCH-HHHHHHHHHHHHTTCSEEEEC-CCCC--SSCCHHHHHHHTTCCEEEESSCCC---TTT-CE--
T ss_pred CCCEEEEEe--CCCCH-HHHHHHHHHHHHcCCCEEEEe-cCcc--ccHHHHHHHHHcCCCEEEEccCCC---ccc-cC--
Confidence 366665543 33444 333445666777889888862 2221 112334455678999998765432 111 22
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecCc--chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDT--DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLY 171 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~--~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~ 171 (458)
.+...+..-+..+++.|...|.++++++..... ......+.+.+.+++.|+. +........+..+....++
T Consensus 99 -~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~ 171 (272)
T 3o74_A 99 -SVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTGE------VRRYQGEAFSRECGQRLMQ 171 (272)
T ss_dssp -EEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSE------EEEEEESSSSHHHHHHHHH
T ss_pred -EEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCC------hheeecCCCCHHHHHHHHH
Confidence 234566666777888888889999999986543 4567789999999998732 2222222223334445555
Q ss_pred HHHhc---cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHH
Q psy17441 172 EMKNA---QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLT 248 (458)
Q Consensus 172 ~ik~~---~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la 248 (458)
++.+. .+++|++ .+...+..+++++++.|+.+++...+.-|..........++..+.. .....++.|+.++.
T Consensus 172 ~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~vp~di~vvg~d~~~~~~~~~p~lttv~~----~~~~~g~~a~~~l~ 246 (272)
T 3o74_A 172 QLIDDLGGLPDALVT-TSYVLLQGVFDTLQARPVDSRQLQLGTFGDNQLLDFLPLPVNAMAQ----QHGQIAATALELAL 246 (272)
T ss_dssp HHHHHHTSCCSEEEE-SSHHHHHHHHHHHHTSCGGGCCCEEEEESCCGGGGTSSSCEEEEEC----CHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEE-eCchHHHHHHHHHHHcCCCccceEEEEeCChHHHHhcCCCceEEEe----CHHHHHHHHHHHHH
Confidence 54332 3677655 5666788899999999983233444444433222222233333332 34456777777776
Q ss_pred HHHH
Q psy17441 249 SALK 252 (458)
Q Consensus 249 ~Al~ 252 (458)
..++
T Consensus 247 ~~i~ 250 (272)
T 3o74_A 247 AAIE 250 (272)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 51
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=97.74 E-value=0.0025 Score=60.20 Aligned_cols=216 Identities=12% Similarity=0.015 Sum_probs=123.7
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+... +..++.. .....+.+..+++.+||.. +..+. ........+...++|+|......+. . +.+.
T Consensus 30 g~~~~~~~~-~~~~~~~-~~~~i~~l~~~~vdgiIi~-~~~~~-~~~~~~~~~~~~~iPvV~~~~~~~~---~---~~~~ 99 (313)
T 2h3h_A 30 GVDTKFFVP-QKEDINA-QLQMLESFIAEGVNGIAIA-PSDPT-AVIPTIKKALEMGIPVVTLDTDSPD---S---GRYV 99 (313)
T ss_dssp TCEEEEECC-SSSCHHH-HHHHHHHHHHTTCSEEEEC-CSSTT-TTHHHHHHHHHTTCCEEEESSCCTT---S---CCSC
T ss_pred CCEEEEECC-CCCCHHH-HHHHHHHHHHcCCCEEEEe-CCChH-HHHHHHHHHHHCCCeEEEeCCCCCC---c---ceeE
Confidence 556554421 2344433 3344566767889998862 33222 2223444556789999988664321 1 1223
Q ss_pred ecCCCchhHHHHHHHHHHhc--CCeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKHF--NYMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQL 170 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~--~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l 170 (458)
.+...+...+..+++.+... |.++++++... ........+.+++.+++.|+. +........+..+....+
T Consensus 100 ~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~------~~~~~~~~~~~~~~~~~~ 173 (313)
T 2h3h_A 100 YIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIE------IVDILNDEEDGARAVSLA 173 (313)
T ss_dssp EEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCE------EEEEEECSSCHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCE------EEEeecCCCCHHHHHHHH
Confidence 34566666777788877776 99999999865 335667889999999988733 222222222334445566
Q ss_pred HHHHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccCC-CCCe--eEEEEecCCCchhHHHHHHHH
Q psy17441 171 YEMKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKN-VPVG--IIGLKLVNATNEDAHIRDSIY 245 (458)
Q Consensus 171 ~~ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~~-~~~g--~~g~~~~~~~~~~~~~yDAv~ 245 (458)
+++.+. .+++|++ .+...+..+++++++.|+. ++-..+..|....... +..| ...+.. ......+-|+.
T Consensus 174 ~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~p-~dv~vvg~d~~~~~~~~~~~g~~lttv~~----~~~~~g~~av~ 247 (313)
T 2h3h_A 174 EAALNAHPDLDAFFG-VYAYNGPAQALVVKNAGKV-GKVKIVCFDTTPDILQYVKEGVIQATMGQ----RPYMMGYLSVT 247 (313)
T ss_dssp HHHHHHCTTCCEEEE-CSTTHHHHHHHHHHHTTCT-TTSEEEEECCCHHHHHHHHHTSCSEEEEC----CHHHHHHHHHH
T ss_pred HHHHHHCcCceEEEE-cCCCccHHHHHHHHHcCCC-CCeEEEEeCCCHHHHHHHHcCCeEEEEec----CHHHHHHHHHH
Confidence 666554 3466665 4455788899999999953 3344454444322111 1112 122221 23456777777
Q ss_pred HHHHHHH
Q psy17441 246 VLTSALK 252 (458)
Q Consensus 246 ~la~Al~ 252 (458)
++...++
T Consensus 248 ~l~~~i~ 254 (313)
T 2h3h_A 248 VLYLMNK 254 (313)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7766654
No 52
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=97.63 E-value=0.0021 Score=59.13 Aligned_cols=217 Identities=10% Similarity=0.058 Sum_probs=124.6
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCC-eEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISER-VYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
|+++.+...++..+..+ .....+.+.+++ +.+||-. +..+. ........+...++|+|..+...+ +. +.+
T Consensus 30 g~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~vdgii~~-~~~~~-~~~~~~~~~~~~~ipvV~~~~~~~---~~---~~~ 100 (276)
T 3ksm_A 30 GVTLLHRSTKDDGDIAG-QIQILSYHLSQAPPDALILA-PNSAE-DLTPSVAQYRARNIPVLVVDSDLA---GD---AHQ 100 (276)
T ss_dssp TCEEEECCCSSTTCHHH-HHHHHHHHHHHSCCSEEEEC-CSSTT-TTHHHHHHHHHTTCCEEEESSCCS---SS---CSS
T ss_pred CCEEEEECCCCCCCHHH-HHHHHHHHHHhCCCCEEEEe-CCCHH-HHHHHHHHHHHCCCcEEEEecCCC---CC---Ccc
Confidence 66666555444455533 344456676777 9999972 32222 334556667788999999876432 11 122
Q ss_pred eecCCCchhHHHHHHHHHHhc----CCeEEEEEEec--CcchhHHHHHHHHhhhcc-CCcceeeEEEEEEEEeCCCcccH
Q psy17441 94 LRTVPPYSHQADVWVELLKHF----NYMKVIFIHSS--DTDGRALLGRFQTTSQNQ-EDDVEIKVQVEAVIEFEPGLTTF 166 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~----~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~-gi~v~~~~~v~~~~~~~~~~~d~ 166 (458)
..+...+...+..+++.+... |.++++++... ........+.+++.+++. | ..+........+..+.
T Consensus 101 ~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~------~~~~~~~~~~~~~~~~ 174 (276)
T 3ksm_A 101 GLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDK------IRIIAAPYAGDDRGAA 174 (276)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTT------EEEEECCBCCSSHHHH
T ss_pred eEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCC------cEEEEEecCCCcHHHH
Confidence 234466777777888888777 89999999854 335667889999999887 6 3333211112233344
Q ss_pred HHHHHHHHhcc--CeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC-CCCCeeE-EEEecCCCchhHHHHH
Q psy17441 167 KDQLYEMKNAQ--ARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK-NVPVGII-GLKLVNATNEDAHIRD 242 (458)
Q Consensus 167 ~~~l~~ik~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~-~~~~g~~-g~~~~~~~~~~~~~yD 242 (458)
...++++.+.. +++|++ .+...+..+++++++.|+ .++-..+..|...... .+..|.+ ..... .....++.
T Consensus 175 ~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~-p~di~vig~d~~~~~~~~~~~~~l~ttv~~---~~~~~g~~ 249 (276)
T 3ksm_A 175 RSEMLRLLKETPTIDGLFT-PNESTTIGALVAIRQSGM-SKQFGFIGFDQTEELEAAMYAGEISNLVVQ---NPEYMGYL 249 (276)
T ss_dssp HHHHHHHHHHCSCCCEEEC-CSHHHHHHHHHHHHHTTC-TTSSEEEEESCCHHHHHHHHTTSSSEEEEC---CHHHHHHH
T ss_pred HHHHHHHHHhCCCceEEEE-CCchhhhHHHHHHHHcCC-CCCeEEEEeCCCHHHHHHHHcCCceEEEEe---CHHHhHHH
Confidence 45555654443 455543 455667889999999998 3334444444332221 1222322 21111 23356666
Q ss_pred HHHHHHHHH
Q psy17441 243 SIYVLTSAL 251 (458)
Q Consensus 243 Av~~la~Al 251 (458)
|+.++...+
T Consensus 250 a~~~l~~~i 258 (276)
T 3ksm_A 250 AVQRALDLV 258 (276)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665544
No 53
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=97.61 E-value=1.2e-05 Score=69.02 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=54.7
Q ss_pred cccccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcccceeEEee
Q psy17441 334 DALNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 391 (458)
Q Consensus 334 ~~~~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yta~l~s~lt 391 (458)
...++.+++||++.++++.|+||..|.+..||+++++|+++++++++..++.+++.++
T Consensus 64 ~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~ 121 (166)
T 3pjs_K 64 QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFV 121 (166)
T ss_dssp CCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSS
T ss_pred ccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999999999999999999999999999999999999999999998885
No 54
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=97.55 E-value=0.0038 Score=58.39 Aligned_cols=221 Identities=6% Similarity=-0.071 Sum_probs=126.1
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+...++..++.. .....+.++.+++.+||-. |.... ........+...+||+|......+.... .+.+.
T Consensus 33 g~~~~~~~~~~~~~~~~-~~~~i~~l~~~~vdgiii~-~~~~~-~~~~~~~~~~~~giPvV~~~~~~~~~~~---~~~~~ 106 (297)
T 3rot_A 33 KVDLQILAPPGANDVPK-QVQFIESALATYPSGIATT-IPSDT-AFSKSLQRANKLNIPVIAVDTRPKDKTK---NPYLV 106 (297)
T ss_dssp TCEEEEECCSSSCCHHH-HHHHHHHHHHTCCSEEEEC-CCCSS-TTHHHHHHHHHHTCCEEEESCCCSCTTT---SCCSC
T ss_pred CcEEEEECCCCcCCHHH-HHHHHHHHHHcCCCEEEEe-CCCHH-HHHHHHHHHHHCCCCEEEEcCCCccccc---cCcce
Confidence 56655544222134433 3445666778889888851 33332 3344556667789999998765432111 12334
Q ss_pred ecCCCchhHHHHHHHHHHhcC--CeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKHFN--YMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQL 170 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~~--w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l 170 (458)
.+...+...+..+++.+...+ -++++++.... .......+.+++.+++.|+. +.... ...........+
T Consensus 107 ~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~------~~~~~-~~~~~~~~~~~~ 179 (297)
T 3rot_A 107 FLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIF------FEELD-VGTDPNQVQSRV 179 (297)
T ss_dssp EEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCE------EEEEE-CCSCHHHHHHHH
T ss_pred EEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCe------EEEee-cCCChHHHHHHH
Confidence 445677777788888887777 89999997553 34557789999999998743 22222 222333445555
Q ss_pred HHHHhcc--CeEEEEEeChhhHHHHHHHHHhcCCcccc-eEE-EeeccccccCC-CCCee-EEEEecCCCchhHHHHHHH
Q psy17441 171 YEMKNAQ--ARVYLMYASKQDAEIIFKDAQYLNMTETG-YVW-IVTEQALTAKN-VPVGI-IGLKLVNATNEDAHIRDSI 244 (458)
Q Consensus 171 ~~ik~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~-~~w-i~t~~~~~~~~-~~~g~-~g~~~~~~~~~~~~~yDAv 244 (458)
+++.+.. +++|+ +.+...+..+++++++.|+.-++ .+- +..|....... +..|. +.... . .....++.|+
T Consensus 180 ~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~~dv~vig~D~~~~~~~~i~~~~~lttv~-~--~~~~~g~~av 255 (297)
T 3rot_A 180 KSYFKIHPETNIIF-CLTSQALDPLGQMLLHPDRYDFNYQPQVYSFDKTPNTVSLIHKKLVNYVMD-Q--QPFLMGYLSI 255 (297)
T ss_dssp HHHHHHCTTCCEEE-ESSHHHHHHHHHHHHSHHHHTCCCCCEEEEECCCHHHHHHHHTTSCCEEEC-C--CHHHHHHHHH
T ss_pred HHHHHhCCCCCEEE-EcCCcchHHHHHHHHhcCCccCCCceEEEEeCCCHHHHHHHHcCCceEEEe-c--ChHHHHHHHH
Confidence 6644433 45554 35566788899999999986433 443 33333221111 11221 11111 1 2345677777
Q ss_pred HHHHHHHH
Q psy17441 245 YVLTSALK 252 (458)
Q Consensus 245 ~~la~Al~ 252 (458)
.++...++
T Consensus 256 ~~l~~~i~ 263 (297)
T 3rot_A 256 TQLVLMNR 263 (297)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766554
No 55
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.52 E-value=0.024 Score=52.76 Aligned_cols=215 Identities=12% Similarity=0.033 Sum_probs=123.3
Q ss_pred cceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 14 KGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
.|+++.+.. ... ..+......+.+.+.+|.+||- .... ........+...++|+|..+...+. .. ..+
T Consensus 41 ~g~~~~~~~--~~~-~~~~~~~~~~~l~~~~vdGiI~--~~~~--~~~~~~~~l~~~~iPvV~i~~~~~~---~~--~~~ 108 (295)
T 3hcw_A 41 HGYGTQTTV--SNN-MNDLMDEVYKMIKQRMVDAFIL--LYSK--ENDPIKQMLIDESMPFIVIGKPTSD---ID--HQF 108 (295)
T ss_dssp TTCEEEECC--CCS-HHHHHHHHHHHHHTTCCSEEEE--SCCC--TTCHHHHHHHHTTCCEEEESCCCSS---GG--GGS
T ss_pred CCCEEEEEc--CCC-ChHHHHHHHHHHHhCCcCEEEE--cCcc--cChHHHHHHHhCCCCEEEECCCCcc---cc--CCc
Confidence 356554432 222 2233344556676789999886 2222 1123445566789999988653321 11 012
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecCc--chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDT--DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLY 171 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~--~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~ 171 (458)
..+...+..-+..+++.|...|.++++++..... ......+.+++.+++.|+.+ . ......+..+....++
T Consensus 109 ~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~------~-~~~~~~~~~~~~~~~~ 181 (295)
T 3hcw_A 109 THIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDY------Q-IIETSNEREVILNYMQ 181 (295)
T ss_dssp CEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEE------E-EEEECSCHHHHHHHHH
T ss_pred eEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCe------e-EEeccCCHHHHHHHHH
Confidence 2233455566677778887889999999986543 45677899999999988432 2 1122223333444455
Q ss_pred HHHhc-----cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEe-eccccccCCCCCeeEEEEecCCCchhHHHHHHHH
Q psy17441 172 EMKNA-----QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIV-TEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIY 245 (458)
Q Consensus 172 ~ik~~-----~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~-t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~ 245 (458)
++.+. .+++|+ +++...+..+++++++.|+.-++.+-|+ -|...........+..+.. .....++-|+.
T Consensus 182 ~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vig~D~~~~~~~~~p~lttv~~----~~~~~g~~a~~ 256 (295)
T 3hcw_A 182 NLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDVMTATFNDSYLTEIASPPQTCIDI----KPRMLGQQAGS 256 (295)
T ss_dssp HHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTEEEEEECCSHHHHTSSSCCEEEEC----CHHHHHHHHHH
T ss_pred HHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEEEEeCChhHHhhCCCCeeEEEE----CHHHHHHHHHH
Confidence 54332 466665 4566678899999999999765555444 3332211122223333332 23456677777
Q ss_pred HHHHHHH
Q psy17441 246 VLTSALK 252 (458)
Q Consensus 246 ~la~Al~ 252 (458)
++...++
T Consensus 257 ~l~~~i~ 263 (295)
T 3hcw_A 257 AILNILK 263 (295)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6665554
No 56
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=97.51 E-value=0.006 Score=58.06 Aligned_cols=186 Identities=5% Similarity=-0.119 Sum_probs=108.8
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCC--eEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccc--
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISER--VYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIH-- 90 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~-- 90 (458)
|+++.+. +...++.. .....+.+.+++ +.+||. ..............+...++|+|......+..+.. .+
T Consensus 35 g~~l~~~--~~~~~~~~-~~~~i~~l~~~~~~vdgiIi--~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~-~~~~ 108 (332)
T 2rjo_A 35 GLPYVPL--TTEGSSEK-GIADIRALLQKTGGNLVLNV--DPNDSADARVIVEACSKAGAYVTTIWNKPKDLHPW-DYNP 108 (332)
T ss_dssp TCCEEEE--ECTTCHHH-HHHHHHHHHHHTTTCEEEEE--CCSSHHHHHHHHHHHHHHTCEEEEESCCCTTCCGG-GGTT
T ss_pred CCEEEEe--cCCCCHHH-HHHHHHHHHHCCCCCCEEEE--eCCCHHHHHHHHHHHHHCCCeEEEECCCCCcccch-hccc
Confidence 4555443 33444433 333456666777 999997 33221011133444556799999887643321111 11
Q ss_pred cceeecCCCchhHHHHHHHHHHh--cCCeEEEEEEecC--cchhHHHHHHHHhhhcc-CCcceeeEEEEEEEEeCCCccc
Q psy17441 91 VSFLRTVPPYSHQADVWVELLKH--FNYMKVIFIHSSD--TDGRALLGRFQTTSQNQ-EDDVEIKVQVEAVIEFEPGLTT 165 (458)
Q Consensus 91 p~~~r~~p~~~~~~~ai~~ll~~--~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~-gi~v~~~~~v~~~~~~~~~~~d 165 (458)
+.+..+...+...+..+++.|.. .|.+++++|.... .......+.+++.+++. | +.+........+..+
T Consensus 109 ~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pg------i~~~~~~~~~~~~~~ 182 (332)
T 2rjo_A 109 NYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPG------IQLLDFQVADWNSQK 182 (332)
T ss_dssp TEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTT------EEEEEEEECTTCHHH
T ss_pred ceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCC------cEEEeeccCCCCHHH
Confidence 23445556666777778887766 6999999998653 34567788999999987 7 332222222223334
Q ss_pred HHHHHHHHHhc---cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeecc
Q psy17441 166 FKDQLYEMKNA---QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQ 214 (458)
Q Consensus 166 ~~~~l~~ik~~---~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~ 214 (458)
....++++.+. .+++|++ .+...+..+++++++.|+. ++...+..|.
T Consensus 183 ~~~~~~~ll~~~~~~~~aI~~-~nd~~A~g~~~al~~~G~~-~di~vvg~D~ 232 (332)
T 2rjo_A 183 AFPIMQAWMTRFNSKIKGVWA-ANDDMALGAIEALRAEGLA-GQIPVTGMDG 232 (332)
T ss_dssp HHHHHHHHHHHHGGGEEEEEE-SSHHHHHHHHHHHHHTTCB-TTBCEECSBC
T ss_pred HHHHHHHHHHhcCCCeeEEEE-CCCchHHHHHHHHHHcCCC-CCCEEEeecC
Confidence 44555665444 4555553 5556788899999999987 3344444443
No 57
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=97.48 E-value=0.0072 Score=56.01 Aligned_cols=216 Identities=10% Similarity=-0.010 Sum_probs=120.1
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcc-cCCcEEeeecCCCCCCCCccccce
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGF-YHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~-~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
|+++.+. +...++ +......+.+.+.++.+||.. +... . ......+.. .++|+|......+. . ++.
T Consensus 37 g~~~~~~--~~~~~~-~~~~~~~~~l~~~~vdgii~~-~~~~--~-~~~~~~l~~~~~iPvV~~~~~~~~---~---~~~ 103 (289)
T 1dbq_A 37 GYTLILG--NAWNNL-EKQRAYLSMMAQKRVDGLLVM-CSEY--P-EPLLAMLEEYRHIPMVVMDWGEAK---A---DFT 103 (289)
T ss_dssp TCEEEEE--ECTTCH-HHHHHHHHHHHHTTCSEEEEE-CSCC--C-HHHHHHHHHTTTSCEEEEECSSCC---S---SSC
T ss_pred CCeEEEE--cCCCCh-HHHHHHHHHHHhCCCCEEEEE-eccC--C-HHHHHHHHhccCCCEEEEccCCCc---c---CcC
Confidence 5555443 344444 333444566767889998862 2221 2 223344433 79999988764321 1 112
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLY 171 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~ 171 (458)
..+...+...+..+++.+...|.++++++.... .......+.+.+.+++.|+.+... ....-+.+..+....++
T Consensus 104 ~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~----~~~~~~~~~~~~~~~~~ 179 (289)
T 1dbq_A 104 DAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPES----WIVQGDFEPESGYRAMQ 179 (289)
T ss_dssp EEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGG----GBCCCCSSHHHHHHHHH
T ss_pred CEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChH----HeEeCCCCHHHHHHHHH
Confidence 234456666677788888888999999997653 345677889999999888543110 00001112233345555
Q ss_pred HHHh--ccCeEEEEEeChhhHHHHHHHHHhcCCcccceEE-EeeccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHH
Q psy17441 172 EMKN--AQARVYLMYASKQDAEIIFKDAQYLNMTETGYVW-IVTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLT 248 (458)
Q Consensus 172 ~ik~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~w-i~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la 248 (458)
++.+ ..+++|++ .+...+..+++++++.|+.-++.+- +..|.......+..++..+.. .....++.|+.++.
T Consensus 180 ~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vvg~d~~~~~~~~~p~lttv~~----~~~~~g~~a~~~l~ 254 (289)
T 1dbq_A 180 QILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQ----PKDSLGETAFNMLL 254 (289)
T ss_dssp HHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEEEEECCTTGGGSSSCCEEEEC----CSHHHHHHHHHHHH
T ss_pred HHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEEeeCCchHhccCCCccccccC----CHHHHHHHHHHHHH
Confidence 6554 35667665 4556788899999999987544443 333332221112223333321 23456777777766
Q ss_pred HHHH
Q psy17441 249 SALK 252 (458)
Q Consensus 249 ~Al~ 252 (458)
..++
T Consensus 255 ~~i~ 258 (289)
T 1dbq_A 255 DRIV 258 (289)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5553
No 58
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=97.48 E-value=0.0093 Score=55.36 Aligned_cols=215 Identities=12% Similarity=0.012 Sum_probs=121.6
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcc-cCCcEEeeecCCCCCCCCccccce
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGF-YHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~-~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
|+++.+. +...++ +......+.+.+.+|.+||.. + ... ....+ ..+.. .++|+|......+ + +.+
T Consensus 51 g~~~~~~--~~~~~~-~~~~~~~~~l~~~~vdgii~~-~-~~~-~~~~~-~~l~~~~~iPvV~~~~~~~---~----~~~ 116 (296)
T 3brq_A 51 GRQLLLA--DGKHSA-EEERQAIQYLLDLRCDAIMIY-P-RFL-SVDEI-DDIIDAHSQPIMVLNRRLR---K----NSS 116 (296)
T ss_dssp TCEEEEE--CCTTSH-HHHHHHHHHHHHTTCSEEEEE-C-SSS-CHHHH-HHHHHTCSSCEEEESCCCS---S----SGG
T ss_pred CCEEEEE--eCCCCH-HHHHHHHHHHHhcCCCEEEEe-c-CCC-ChHHH-HHHHhcCCCCEEEEccccC---C----CCC
Confidence 5555443 333444 223344566667889999873 2 221 22233 33445 7999998865322 1 122
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLY 171 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~ 171 (458)
..+...+...+..+++.+...|.++++++..+. ..+....+.+.+.+++.|+.+.... ...-..+..+-...++
T Consensus 117 ~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~----~~~~~~~~~~~~~~~~ 192 (296)
T 3brq_A 117 HSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKL----IANGKWTPASGAEGVE 192 (296)
T ss_dssp GEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGG----EECCCSSHHHHHHHHH
T ss_pred CEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhh----EEeCCCChhHHHHHHH
Confidence 334455555667778888778999999998653 3566778899999999885431110 1111112233345556
Q ss_pred HHHh--ccCeEEEEEeChhhHHHHHHHHHhcCCcccceEE-EeeccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHH
Q psy17441 172 EMKN--AQARVYLMYASKQDAEIIFKDAQYLNMTETGYVW-IVTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLT 248 (458)
Q Consensus 172 ~ik~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~w-i~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la 248 (458)
++.+ .++++|++ .+...+..+++++++.|+.-++.+- +..|.......+..++..+.. .....++-|+.++.
T Consensus 193 ~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~~~~~~~p~lttv~~----~~~~~g~~a~~~l~ 267 (296)
T 3brq_A 193 MLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQVSVIGFDDIAIAPYTVPALSSVKI----PVTEMIQEIIGRLI 267 (296)
T ss_dssp HHHTC--CCSEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEEEESCCTTGGGSSSCCEEEEC----CHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEeecCchhhhccCCCceeeeC----CHHHHHHHHHHHHH
Confidence 6544 35677665 4566688899999999987544443 443432222112223322221 23456777777766
Q ss_pred HHHH
Q psy17441 249 SALK 252 (458)
Q Consensus 249 ~Al~ 252 (458)
..++
T Consensus 268 ~~i~ 271 (296)
T 3brq_A 268 FMLD 271 (296)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5554
No 59
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=97.47 E-value=0.017 Score=53.64 Aligned_cols=212 Identities=9% Similarity=0.056 Sum_probs=120.0
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+. +...++. ......+.+..++|.+||. ..... ........+...++|+|......+ +. .+.
T Consensus 50 g~~~~~~--~~~~~~~-~~~~~~~~l~~~~vdgii~--~~~~~-~~~~~~~~~~~~~iPvV~~~~~~~---~~----~~~ 116 (293)
T 2iks_A 50 GYQLLIA--CSEDQPD-NEMRCIEHLLQRQVDAIIV--STSLP-PEHPFYQRWANDPFPIVALDRALD---RE----HFT 116 (293)
T ss_dssp TCEEEEE--ECTTCHH-HHHHHHHHHHHTTCSEEEE--CCSSC-TTCHHHHTTTTSSSCEEEEESCCC---TT----TCE
T ss_pred CCEEEEE--cCCCCHH-HHHHHHHHHHHcCCCEEEE--eCCCC-CcHHHHHHHHhCCCCEEEECCccC---cC----CCC
Confidence 5555443 3333442 2334456666788999887 32221 222233445678999998875322 11 122
Q ss_pred ecCCCchhHHHHHHHHHHhcCCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKHFNYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYE 172 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ 172 (458)
.+...+...+..+++.|...|.++++++.... .......+.+.+.+++.|+. ......-..+..+-...+++
T Consensus 117 ~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~------~~~~~~~~~~~~~~~~~~~~ 190 (293)
T 2iks_A 117 SVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPRE------VHFLYANSYEREAAAQLFEK 190 (293)
T ss_dssp EEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCC------EEEEEESSSCHHHHHHHHHH
T ss_pred EEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHHHHHHcCCC------ccEEEcCCCChhhHHHHHHH
Confidence 33456666667778888888999999998653 34567788999999998731 11111112223333455556
Q ss_pred HHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceE-EEeeccccccCCCCCeeE-EEEecCCCchhHHHHHHHHHHH
Q psy17441 173 MKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYV-WIVTEQALTAKNVPVGII-GLKLVNATNEDAHIRDSIYVLT 248 (458)
Q Consensus 173 ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~-wi~t~~~~~~~~~~~g~~-g~~~~~~~~~~~~~yDAv~~la 248 (458)
+.+. .+++|++ .+...+..+++++++.|+.-++.+ .+.-|.... ..+..+-+ .+.. .....++-|+.++.
T Consensus 191 ~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~~-~~~~~p~lttv~~----~~~~~g~~a~~~l~ 264 (293)
T 2iks_A 191 WLETHPMPQALFT-TSFALLQGVMDVTLRRDGKLPSDLAIATFGDNEL-LDFLQCPVLAVAQ----RHRDVAERVLEIVL 264 (293)
T ss_dssp HTTTSCCCSEEEE-SSHHHHHHHHHHHHHHHSSCCSSCEEEEESCCGG-GGGCSSEEEEEEC----CHHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEEECCHHH-HhhcCCCeeEEeC----CHHHHHHHHHHHHH
Confidence 5443 3566554 455668889999999998754444 444443322 12233333 2221 23456677776665
Q ss_pred HHH
Q psy17441 249 SAL 251 (458)
Q Consensus 249 ~Al 251 (458)
..+
T Consensus 265 ~~i 267 (293)
T 2iks_A 265 ASL 267 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 60
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=97.43 E-value=0.031 Score=51.86 Aligned_cols=198 Identities=13% Similarity=0.026 Sum_probs=114.9
Q ss_pred HHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHHhcC
Q psy17441 36 VCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFN 115 (458)
Q Consensus 36 ~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~ 115 (458)
..+.+.+.+|.+||. ..... . ......+...++|+|..+...+ +. .+..+...+..-+..+++.|...|
T Consensus 59 ~~~~l~~~~vdgiIi--~~~~~-~-~~~~~~l~~~~iPvV~~~~~~~---~~----~~~~V~~D~~~~g~~a~~~L~~~G 127 (290)
T 2rgy_A 59 AVRFLIGRDCDGVVV--ISHDL-H-DEDLDELHRMHPKMVFLNRAFD---AL----PDASFCPDHRRGGELAAATLIEHG 127 (290)
T ss_dssp HHHHHHHTTCSEEEE--CCSSS-C-HHHHHHHHHHCSSEEEESSCCT---TS----GGGEECCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCccEEEE--ecCCC-C-HHHHHHHhhcCCCEEEEccccC---CC----CCCEEEeCcHHHHHHHHHHHHHCC
Confidence 455566788999987 32221 2 2233344567999998865322 11 122344566666677788887789
Q ss_pred CeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHh--ccCeEEEEEeChhhHH
Q psy17441 116 YMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKN--AQARVYLMYASKQDAE 191 (458)
Q Consensus 116 w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~--~~~~viil~~~~~~~~ 191 (458)
.++++++.... .......+.+.+.+++.|+.+.... ...-..+..+-...++++.+ ..+++|++ ++...+.
T Consensus 128 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~ 202 (290)
T 2rgy_A 128 HRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVP----LIESDFSPEGGYAATCQLLESKAPFTGLFC-ANDTMAV 202 (290)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSC----EEECCSSHHHHHHHHHHHHHHTCCCSEEEE-SSHHHHH
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCccc----EEecCCChhHHHHHHHHHHhCCCCCcEEEE-CCcHHHH
Confidence 99999998653 3456778889999999885442111 11111122333444555443 35677664 5566788
Q ss_pred HHHHHHHhcCCcccceE-EEeeccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHHHHHH
Q psy17441 192 IIFKDAQYLNMTETGYV-WIVTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSALKE 253 (458)
Q Consensus 192 ~il~~a~~~g~~~~~~~-wi~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~Al~~ 253 (458)
.+++++++.|+.-++.+ .+.-|...........+..+.. .....++-|+.++...++.
T Consensus 203 g~~~al~~~G~~vP~di~vvg~D~~~~~~~~~p~lttv~~----~~~~~g~~a~~~l~~~i~~ 261 (290)
T 2rgy_A 203 SALARFQQLGISVPGDVSVIGYDDDYSAAYAAPALTSVHI----PTAELTQNAVRWLINQCYG 261 (290)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEEECCTTSTTSSSCCEEEEC----CHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCceEEEEeCCchHhcccCCCceEEeC----CHHHHHHHHHHHHHHHHhC
Confidence 89999999998754444 3433332222111222222221 2345677777777666653
No 61
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=97.42 E-value=0.003 Score=59.39 Aligned_cols=170 Identities=10% Similarity=0.089 Sum_probs=100.7
Q ss_pred cceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCC---C--Cc
Q psy17441 14 KGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFS---D--KN 88 (458)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls---~--~~ 88 (458)
.|.++.+..|+.+.++.+ .....+.+.+++|.+||. .... ....+.. ...++|+|..+..++... . ..
T Consensus 40 ~g~~v~l~~~~~~~~~~~-~~~~~~~l~~~~vDgII~--~~~~--~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~ 112 (302)
T 2qh8_A 40 EGKNLEFDYKTAQGNPAI-AVQIARQFVGENPDVLVG--IATP--TAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQ 112 (302)
T ss_dssp BTTTEEEEEEECTTCHHH-HHHHHHHHHHTCCSEEEE--ESHH--HHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSS
T ss_pred CCCceEEEEecCCCCHHH-HHHHHHHHHhCCCCEEEE--CChH--HHHHHHh--cCCCcCEEEEecCCHhhcCccccccC
Confidence 344666777777777744 444567777889999997 3211 2222332 267999998775544210 0 00
Q ss_pred cccceeecCCCchhHHHHHHHHHHhc--CCeEEEEEEecCc-chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCccc
Q psy17441 89 IHVSFLRTVPPYSHQADVWVELLKHF--NYMKVIFIHSSDT-DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTT 165 (458)
Q Consensus 89 ~~p~~~r~~p~~~~~~~ai~~ll~~~--~w~~v~ii~~~d~-~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d 165 (458)
..+.+.... +.......++++... |.+++++|+...+ .+....+.+++++++.|+. +.... . ....+
T Consensus 113 ~~~~~~gv~--~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~------~~~~~-~-~~~~~ 182 (302)
T 2qh8_A 113 PGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIK------LVEAT-A-LKSAD 182 (302)
T ss_dssp CCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCE------EEEEE-C-SSGGG
T ss_pred CCCCEEEEE--CCcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCE------EEEEe-c-CChHH
Confidence 012333332 222345556777776 9999999997653 4667789999999998843 22211 2 23466
Q ss_pred HHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCC
Q psy17441 166 FKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNM 202 (458)
Q Consensus 166 ~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~ 202 (458)
....++++.. ++++|++..+ ..+...++++.+.+.
T Consensus 183 ~~~~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~~~~ 217 (302)
T 2qh8_A 183 VQSATQAIAE-KSDVIYALID-NTVASAIEGMIVAAN 217 (302)
T ss_dssp HHHHHHHHGG-GCSEEEECSC-HHHHTTHHHHHHHHH
T ss_pred HHHHHHHHhc-cCCEEEECCc-HhHHHHHHHHHHHHH
Confidence 7778888764 7888877543 334333444444443
No 62
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=97.40 E-value=0.00018 Score=69.74 Aligned_cols=79 Identities=28% Similarity=0.373 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhh
Q psy17441 302 VSVHVVALVLYLLDRFSPFGRFRLSNSDNTEEDALNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVAS 381 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~ 381 (458)
+.+++.+++++.+|+..+ .++..++.+++||++.++++-|+||..|.+..||+++.+++++++++++.
T Consensus 138 ~~~~~~a~~~~~~e~~~~------------~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~ 205 (355)
T 3beh_A 138 VVLFAVALAAYVIERDIQ------------PEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGL 205 (355)
T ss_dssp HHHHHHHHHHHHHHTTTC------------HHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCC------------CcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence 345566777788886321 11223688999999999999999999999999999999999999999999
Q ss_pred cccceeEEeee
Q psy17441 382 YTANLAAFLVL 392 (458)
Q Consensus 382 yta~l~s~lt~ 392 (458)
.++.+++.+..
T Consensus 206 ~~~~i~~~~~~ 216 (355)
T 3beh_A 206 WAGILATGFYQ 216 (355)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999877653
No 63
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=97.40 E-value=0.016 Score=53.61 Aligned_cols=211 Identities=9% Similarity=0.014 Sum_probs=120.0
Q ss_pred cceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 14 KGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
.|+++.+.. ...++ +......+.+.+.++.+||. ..... ....+.. +. .++|+|......+ +. .+
T Consensus 37 ~g~~~~~~~--~~~~~-~~~~~~~~~l~~~~vdgiI~--~~~~~-~~~~~~~-l~-~~iPvV~~~~~~~---~~----~~ 101 (285)
T 3c3k_A 37 NGYRILLCN--TESDL-ARSRSCLTLLSGKMVDGVIT--MDALS-ELPELQN-II-GAFPWVQCAEYDP---LS----TV 101 (285)
T ss_dssp TTCEEEEEE--CTTCH-HHHHHHTHHHHTTCCSEEEE--CCCGG-GHHHHHH-HH-TTSSEEEESSCCT---TS----SS
T ss_pred cCCEEEEEe--CCCCH-HHHHHHHHHHHhCCCCEEEE--eCCCC-ChHHHHH-Hh-cCCCEEEEccccC---CC----CC
Confidence 356655433 33344 22334456666789999997 32221 2223333 44 8999998865322 11 12
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLY 171 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~ 171 (458)
..+...+..-+..+++.+...|.++++++.... .......+.+.+.+++.|+.+. + .....+..+-...++
T Consensus 102 ~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~----~---~~~~~~~~~~~~~~~ 174 (285)
T 3c3k_A 102 SSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS----R---ISYAENLDYMAGKLA 174 (285)
T ss_dssp CEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC----E---EEECSSSSHHHHHHH
T ss_pred CEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce----E---eecCCChHHHHHHHH
Confidence 233455555667777888777999999998654 3456778889999998885441 1 111222334445566
Q ss_pred H--HHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEe-eccccccCCCCCeeEEEEecCCCchhHHHHHHHHH
Q psy17441 172 E--MKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIV-TEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYV 246 (458)
Q Consensus 172 ~--ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~-t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~ 246 (458)
+ +.+. .+++|++ .+...+..+++++++.|+.-++.+-++ -|...........+..+.. .....++-|+.+
T Consensus 175 ~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~vvg~d~~~~~~~~~p~lttv~~----~~~~~g~~a~~~ 249 (285)
T 3c3k_A 175 TFSLLKSAVKPDAIFA-ISDVLAAGAIQALTESGLSIPQDVAVVGFDGVDISQITVPALTTVQQ----PSEQIGMKAVSL 249 (285)
T ss_dssp HHHHHSSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEECSBCCGGGGTSSSCCBEEEC----CHHHHHHHHHHH
T ss_pred HHHHHcCCCCCeEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEEEeCChHHHhhcCCCceEEeC----CHHHHHHHHHHH
Confidence 6 5443 4666664 455678889999999998755444443 3332222111112222221 234566777766
Q ss_pred HHHHH
Q psy17441 247 LTSAL 251 (458)
Q Consensus 247 la~Al 251 (458)
+...+
T Consensus 250 l~~~i 254 (285)
T 3c3k_A 250 LLEQI 254 (285)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65544
No 64
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=97.39 E-value=0.00025 Score=66.70 Aligned_cols=59 Identities=19% Similarity=0.117 Sum_probs=53.9
Q ss_pred ccccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcccceeEEeeec
Q psy17441 335 ALNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLE 393 (458)
Q Consensus 335 ~~~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yta~l~s~lt~~ 393 (458)
..++.+++||++.++++-|+|+..|.+..||++++++.++++++++..++.+.+.++.+
T Consensus 80 ~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~ 138 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45789999999999999999999999999999999999999999999999888877544
No 65
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=97.39 E-value=0.0002 Score=68.22 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=55.2
Q ss_pred ccccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcccceeEEeeecc
Q psy17441 335 ALNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLER 394 (458)
Q Consensus 335 ~~~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yta~l~s~lt~~~ 394 (458)
..++.+++||++.++++.|+|+..|.+..||++++++.++++++++..++.+++.++.++
T Consensus 94 ~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 94 PPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp SSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999999999999988886654
No 66
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.36 E-value=0.016 Score=53.81 Aligned_cols=216 Identities=12% Similarity=0.021 Sum_probs=125.0
Q ss_pred cceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 14 KGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
.|+++.+.. ...+. +......+.+.+.++.+||- .... ........+...++|+|..+...+ +. .+
T Consensus 37 ~g~~~~~~~--~~~~~-~~~~~~~~~l~~~~vdgiIi--~~~~--~~~~~~~~~~~~~iPvV~~~~~~~---~~----~~ 102 (291)
T 3egc_A 37 KGYSVLLAN--TAEDI-VREREAVGQFFERRVDGLIL--APSE--GEHDYLRTELPKTFPIVAVNRELR---IP----GC 102 (291)
T ss_dssp TTCEEEEEE--CTTCH-HHHHHHHHHHHHTTCSEEEE--CCCS--SCCHHHHHSSCTTSCEEEESSCCC---CT----TC
T ss_pred CCCEEEEEe--CCCCH-HHHHHHHHHHHHCCCCEEEE--eCCC--CChHHHHHhhccCCCEEEEecccC---CC----CC
Confidence 355555443 33344 33344566676789999986 2222 123455667788999998876432 11 12
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLY 171 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~ 171 (458)
..+...+...+..+++.|...|-++++++.... .......+.+.+.+++.|+.+....... -..+..+....++
T Consensus 103 ~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~ 178 (291)
T 3egc_A 103 GAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAA----GGVRADNGRDGAI 178 (291)
T ss_dssp EEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC----------CCHHHHH
T ss_pred CEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEe----CCCChhHHHHHHH
Confidence 233456666777888888888999999998654 3456778899999998885431111111 1112223334445
Q ss_pred HHHh--ccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEe-eccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHH
Q psy17441 172 EMKN--AQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIV-TEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLT 248 (458)
Q Consensus 172 ~ik~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~-t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la 248 (458)
++.+ ..+++|++ .+...+..+++++++.|+.-++.+-|+ -|..........++..+.. .....++.|+.++.
T Consensus 179 ~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~~~~~~~p~lttv~~----~~~~~g~~av~~l~ 253 (291)
T 3egc_A 179 KVLTGADRPTALLT-SSHRITEGAMQALNVLGLRYGPDVEIVSFDNLPWMAFLDPPLPVVEQ----PTRRIGQEAMRMLI 253 (291)
T ss_dssp HHHTC-CCCSEEEE-SSHHHHHHHHHHHHHHTCCBTTTBEEEEESCCGGGGGSSSCCCEEEC----CHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEEEecCchhHhhcCCCceEEEE----CHHHHHHHHHHHHH
Confidence 5543 34666664 666778889999999999755444444 3332222112223333322 34456777777776
Q ss_pred HHHH
Q psy17441 249 SALK 252 (458)
Q Consensus 249 ~Al~ 252 (458)
..++
T Consensus 254 ~~i~ 257 (291)
T 3egc_A 254 HMIE 257 (291)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 67
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.35 E-value=0.0028 Score=58.48 Aligned_cols=192 Identities=8% Similarity=-0.039 Sum_probs=107.1
Q ss_pred HHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHHhcCC
Q psy17441 37 CKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNY 116 (458)
Q Consensus 37 ~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w 116 (458)
.+.+.++++.++|.. +... . ......+...++|+|..+...+ + +..+...+...+..+++.+...|.
T Consensus 48 ~~~l~~~~vdgiI~~-~~~~--~-~~~~~~~~~~~iPvV~~~~~~~---~------~~~V~~d~~~~~~~a~~~L~~~G~ 114 (276)
T 2h0a_A 48 ENTTLAYLTDGLILA-SYDL--T-ERFEEGRLPTERPVVLVDAQNP---R------YDSVYLDNRLGGRLAGAYLARFPG 114 (276)
T ss_dssp ------CCCSEEEEE-SCCC--C-------CCSCSSCEEEESSCCT---T------SEEEEECSHHHHHHHHHHHTTSSS
T ss_pred HHHHHhCCCCEEEEe-cCCC--C-HHHHHHHhhcCCCEEEEeccCC---C------CCEEEEccHHHHHHHHHHHHHcCC
Confidence 444557788888873 2222 2 1233445668999998865322 1 233445666677788888888899
Q ss_pred eEEEEEEecC------cchh-HHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhcc--CeEEEEEeCh
Q psy17441 117 MKVIFIHSSD------TDGR-ALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQ--ARVYLMYASK 187 (458)
Q Consensus 117 ~~v~ii~~~d------~~g~-~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~--~~viil~~~~ 187 (458)
++++++.... .... ...+.+.+.+++.|+.+.... + ..-+.+..+-...++++.+.. +++|+ +++.
T Consensus 115 ~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~-~---~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d 189 (276)
T 2h0a_A 115 PIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDR-L---YITRHSQEGGRLALRHFLEKASPPLNVF-AGAD 189 (276)
T ss_dssp CEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGG-E---EEECSSHHHHHHHHHHHHTTCCSSEEEE-CSSH
T ss_pred CeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHH-e---eecCCChHHHHHHHHHHHhCCCCCCEEE-ECCc
Confidence 9999998653 2566 778899999999885431110 1 111222333445556665433 66666 4566
Q ss_pred hhHHHHHHHHHhcCCcccceEEEeeccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHHHH
Q psy17441 188 QDAEIIFKDAQYLNMTETGYVWIVTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSAL 251 (458)
Q Consensus 188 ~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~Al 251 (458)
..+..+++++++.|+.-++.+-+.+-.......+.. +..+.. .....++.|+.++...+
T Consensus 190 ~~a~g~~~al~~~g~~vP~di~vvg~d~~~~~~~~~-lttv~~----~~~~~g~~a~~~l~~~i 248 (276)
T 2h0a_A 190 QVALGVLEEAVRLGLTPGRDVRVLGFDGHPFAEEAG-LSTIAQ----PVEAMGARAAQLLLERM 248 (276)
T ss_dssp HHHHHHHHHHHTTSCTTTTSEEEEEESCCTHHHHHT-CEEEEC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCCchhhhcc-eeEecC----CHHHHHHHHHHHHHHHH
Confidence 678889999999998755555554332211111122 222221 23455666666665544
No 68
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.30 E-value=0.016 Score=53.71 Aligned_cols=216 Identities=10% Similarity=0.023 Sum_probs=125.8
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+.. .+. ..+......+.+.+.++.+||-. +... . ......+...++|+|..+...+. .. .+.
T Consensus 43 g~~~~~~~--~~~-~~~~~~~~~~~~~~~~vdgiIi~-~~~~--~-~~~~~~l~~~~iPvV~~~~~~~~---~~---~~~ 109 (292)
T 3k4h_A 43 GYALYMST--GET-EEEIFNGVVKMVQGRQIGGIILL-YSRE--N-DRIIQYLHEQNFPFVLIGKPYDR---KD---EIT 109 (292)
T ss_dssp TCEEEECC--CCS-HHHHHHHHHHHHHTTCCCEEEES-CCBT--T-CHHHHHHHHTTCCEEEESCCSSC---TT---TSC
T ss_pred CCEEEEEe--CCC-CHHHHHHHHHHHHcCCCCEEEEe-CCCC--C-hHHHHHHHHCCCCEEEECCCCCC---CC---CCC
Confidence 55554432 222 22334455666767899998862 2221 2 24455666789999987664321 11 123
Q ss_pred ecCCCchhHHHHHHHHHHhcCCeEEEEEEecCc--chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKHFNYMKVIFIHSSDT--DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYE 172 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~--~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ 172 (458)
.+...+..-+..+++.|...|.++++++....+ ......+.+.+.+++.|+.+.... ......+..+....+++
T Consensus 110 ~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~----~~~~~~~~~~~~~~~~~ 185 (292)
T 3k4h_A 110 YVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEY----ILHFDFSRESGQQAVEE 185 (292)
T ss_dssp EEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGG----EEECCSSHHHHHHHHHH
T ss_pred EEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChhe----EEecCCCHHHHHHHHHH
Confidence 344566667778888888889999999986543 455778899999999885431111 11112233444556666
Q ss_pred HHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEE-eeccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHH
Q psy17441 173 MKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWI-VTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTS 249 (458)
Q Consensus 173 ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi-~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~ 249 (458)
+.+. .+++|+ +++...+..+++++++.|+.-++.+-+ .-|..........++..+.. .....++.|+.++..
T Consensus 186 ~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~p~lttv~~----~~~~~g~~av~~l~~ 260 (292)
T 3k4h_A 186 LMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNALLSEIASPPLSTVDV----NIYQLGYEAAKALVD 260 (292)
T ss_dssp HHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCCHHHHHSSSCCEEEEC----CHHHHHHHHHHHHHH
T ss_pred HHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCeEEEEEecCcchhhccCCCceEEec----CHHHHHHHHHHHHHH
Confidence 6554 456665 456667888999999999975444444 33332111111222333322 344567777777766
Q ss_pred HHH
Q psy17441 250 ALK 252 (458)
Q Consensus 250 Al~ 252 (458)
.++
T Consensus 261 ~i~ 263 (292)
T 3k4h_A 261 KVE 263 (292)
T ss_dssp HHH
T ss_pred Hhh
Confidence 554
No 69
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=97.29 E-value=0.018 Score=53.38 Aligned_cols=214 Identities=13% Similarity=0.001 Sum_probs=116.9
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+. +...++.. .....+.+.+.++.+||.. +.... ........+...++|+|......+. . +.+.
T Consensus 32 g~~~~~~--~~~~~~~~-~~~~~~~l~~~~vdgiI~~-~~~~~-~~~~~~~~~~~~~iPvV~~~~~~~~---~---~~~~ 100 (290)
T 2fn9_A 32 GYEATIF--DSQNDTAK-ESAHFDAIIAAGYDAIIFN-PTDAD-GSIANVKRAKEAGIPVFCVDRGINA---R---GLAV 100 (290)
T ss_dssp TCEEEEE--ECTTCHHH-HHHHHHHHHHTTCSEEEEC-CSCTT-TTHHHHHHHHHTTCCEEEESSCCSC---S---SSSS
T ss_pred CCEEEEe--CCCCCHHH-HHHHHHHHHHcCCCEEEEe-cCChH-HHHHHHHHHHHCCCeEEEEecCCCC---C---CceE
Confidence 5555443 34444433 3344566667899999972 22221 2223344455689999988653321 1 1122
Q ss_pred e-cCCCchhHHHHHHHHHHhc------CCeE--EEEEEecC--cchhHHHHHHHHhhhcc-CCcceeeEEEEEEEEeCCC
Q psy17441 95 R-TVPPYSHQADVWVELLKHF------NYMK--VIFIHSSD--TDGRALLGRFQTTSQNQ-EDDVEIKVQVEAVIEFEPG 162 (458)
Q Consensus 95 r-~~p~~~~~~~ai~~ll~~~------~w~~--v~ii~~~d--~~g~~~~~~l~~~l~~~-gi~v~~~~~v~~~~~~~~~ 162 (458)
. +...+...+..+++.+... |.++ ++++.... .......+.+++.+++. | +.+......+.+
T Consensus 101 ~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g------~~~~~~~~~~~~ 174 (290)
T 2fn9_A 101 AQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPE------FKMVAQQSAEFD 174 (290)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTT------EEEEEEEECTTC
T ss_pred EEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCC------CEEEEeccCCCC
Confidence 2 4456666677777877666 8899 66676432 34567788999999987 6 332222211222
Q ss_pred cccHHHHHHHHHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccCC-CCCee--EEEEecCCCchh
Q psy17441 163 LTTFKDQLYEMKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKN-VPVGI--IGLKLVNATNED 237 (458)
Q Consensus 163 ~~d~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~~-~~~g~--~g~~~~~~~~~~ 237 (458)
..+-...++++.+. .+++|++ .+...+..+++++++.|+ ++-..+..|....... +..+. +..... ...
T Consensus 175 ~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~~al~~~g~--~dv~vig~d~~~~~~~~~~~p~~~lttv~~---~~~ 248 (290)
T 2fn9_A 175 RDTAYKVTEQILQAHPEIKAIWC-GNDAMALGAMKACEAAGR--TDIYIFGFDGAEDVINAIKEGKQIVATIMQ---FPK 248 (290)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTC--TTCEEECCBCCHHHHHHHHTTCSEEEEEEC---CHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHHHHHHHHCCC--CCeEEEEeCCCHHHHHHHhCCCcEEEEEec---CHH
Confidence 23334555555443 4666664 456678889999999998 2344444443221111 11232 322221 233
Q ss_pred HHHHHHHHHHHHHH
Q psy17441 238 AHIRDSIYVLTSAL 251 (458)
Q Consensus 238 ~~~yDAv~~la~Al 251 (458)
..++.|+.++...+
T Consensus 249 ~~g~~a~~~l~~~i 262 (290)
T 2fn9_A 249 LMARLAVEWADQYL 262 (290)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666665544
No 70
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=97.28 E-value=0.024 Score=53.99 Aligned_cols=215 Identities=11% Similarity=0.004 Sum_probs=124.5
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+. +...++.. .....+.+...++.+||- ..... ....+...+...++|+|..+...+. .. .+
T Consensus 93 g~~~~~~--~~~~~~~~-~~~~~~~l~~~~vdgiIi--~~~~~-~~~~~~~~~~~~~iPvV~~~~~~~~---~~-~~--- 159 (338)
T 3dbi_A 93 GRQLLLA--DGKHSAEE-ERQAIQYLLDLRCDAIMI--YPRFL-SVDEIDDIIDAHSQPIMVLNRRLRK---NS-SH--- 159 (338)
T ss_dssp TCEEEEE--ECTTSHHH-HHHHHHHHHHTTCSEEEE--CCSSS-CHHHHHHHHHHCSSCEEEESSCCSS---SG-GG---
T ss_pred CCEEEEE--eCCCChHH-HHHHHHHHHhCCCCEEEE--eCCCC-ChHHHHHHHHcCCCCEEEEcCCCCC---CC-CC---
Confidence 4444333 33344422 333456676789999987 32221 3345677788889999987654321 11 12
Q ss_pred ecCCCchhHHHHHHHHHHhcCCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKHFNYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYE 172 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ 172 (458)
.+...+..-+..+++.|...|.++++++.... .......+.+.+.+++.|+.+.... ...-..+..+-...+++
T Consensus 160 ~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~----~~~~~~~~~~~~~~~~~ 235 (338)
T 3dbi_A 160 SVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKL----IANGKWTPASGAEGVEM 235 (338)
T ss_dssp EECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGG----EECCCSSHHHHHHHHHH
T ss_pred EEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcce----EEeCCCCHHHHHHHHHH
Confidence 24456666667778888888999999997643 3456778899999999885431110 11111123333445555
Q ss_pred HHh--ccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEE-eeccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHH
Q psy17441 173 MKN--AQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWI-VTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTS 249 (458)
Q Consensus 173 ik~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi-~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~ 249 (458)
+.+ ..+++|++ .+...+..+++++++.|+.-++.+-+ .-|..........++..+.. .....++-|+.++..
T Consensus 236 ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vvg~D~~~~~~~~~p~lttv~~----~~~~~g~~a~~~l~~ 310 (338)
T 3dbi_A 236 LLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQVSVIGFDDIAIAPYTVPALSSVKI----PVTEMIQEIIGRLIF 310 (338)
T ss_dssp HHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEESCCTTGGGSSSCCEEEEC----CHHHHHHHHHHHHHH
T ss_pred HHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCCCCCeEEEEECChHHHhhcCCcceEEec----CHHHHHHHHHHHHHH
Confidence 543 34566654 55667888999999999975544444 34432222222233333332 234566667666655
Q ss_pred HH
Q psy17441 250 AL 251 (458)
Q Consensus 250 Al 251 (458)
.+
T Consensus 311 ~i 312 (338)
T 3dbi_A 311 ML 312 (338)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 71
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=97.27 E-value=0.017 Score=53.61 Aligned_cols=195 Identities=10% Similarity=0.008 Sum_probs=110.9
Q ss_pred HHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHHhcCC
Q psy17441 37 CKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNY 116 (458)
Q Consensus 37 ~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w 116 (458)
.+.+.+.+|.+||. ..... .. .....+...++|+|..+...+ +. ..+ .+...+...+..+++.|...|.
T Consensus 57 ~~~l~~~~vdgiIi--~~~~~-~~-~~~~~l~~~~iPvV~~~~~~~---~~-~~~---~V~~D~~~~g~~a~~~L~~~G~ 125 (287)
T 3bbl_A 57 RDLIRSGNVDGFVL--SSINY-ND-PRVQFLLKQKFPFVAFGRSNP---DW-DFA---WVDIDGTAGTRQAVEYLIGRGH 125 (287)
T ss_dssp HHHHHTTCCSEEEE--CSCCT-TC-HHHHHHHHTTCCEEEESCCST---TC-CCC---EEEECHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCEEEE--eecCC-Cc-HHHHHHHhcCCCEEEECCcCC---CC-CCC---EEEeccHHHHHHHHHHHHHCCC
Confidence 45566788999987 32221 22 233444567999998865322 11 122 2335555666777787777799
Q ss_pred eEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHh-c---cCeEEEEEeChhhH
Q psy17441 117 MKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKN-A---QARVYLMYASKQDA 190 (458)
Q Consensus 117 ~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~-~---~~~viil~~~~~~~ 190 (458)
++++++.... .......+.+.+.+++.|+.+.... ...-+.+..+-...++++.+ . .+++|++ .+...+
T Consensus 126 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a 200 (287)
T 3bbl_A 126 RRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGY----ILRGEGTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMA 200 (287)
T ss_dssp CCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGG----EEECCSSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHH
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhh----EEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHH
Confidence 9999998653 2456778889999998885431100 11111223333455566654 3 4666665 455678
Q ss_pred HHHHHHHHhcCCcccceE-EEeeccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHHHH
Q psy17441 191 EIIFKDAQYLNMTETGYV-WIVTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSAL 251 (458)
Q Consensus 191 ~~il~~a~~~g~~~~~~~-wi~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~Al 251 (458)
..+++++++.|+.-++.+ .+.-|...........+..+.. .....++-|+.++...+
T Consensus 201 ~g~~~al~~~G~~vP~di~vig~d~~~~~~~~~p~lttv~~----~~~~~g~~a~~~l~~~i 258 (287)
T 3bbl_A 201 IGAMAAARERGLTIGTDLAIIGFDDAPMVQYLFPPLSSVRQ----PIAEAGRKCIELLVAIV 258 (287)
T ss_dssp HHHHHHHHHTTCCBTTTBEEEEESCCTTGGGSSSCCEEEEC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCEEEEEECCchHhhccCCCCceEcC----CHHHHHHHHHHHHHHHh
Confidence 889999999998754444 4444433222111122222221 23455666666665444
No 72
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=97.26 E-value=0.0036 Score=58.19 Aligned_cols=213 Identities=7% Similarity=-0.016 Sum_probs=119.3
Q ss_pred cceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 14 KGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
.|+++.+. +...++ +......+.+.+.++.+||. ..... ....+..+ .++|+|......+. +.+
T Consensus 36 ~g~~~~~~--~~~~~~-~~~~~~~~~l~~~~vdgiI~--~~~~~-~~~~~~~l---~~iPvV~~~~~~~~-------~~~ 99 (288)
T 2qu7_A 36 HHLHVAVA--SSEENE-DKQQDLIETFVSQNVSAIIL--VPVKS-KFQMKREW---LKIPIMTLDRELES-------TSL 99 (288)
T ss_dssp GTCEEEEE--ECTTCH-HHHHHHHHHHHHTTEEEEEE--CCSSS-CCCCCGGG---GGSCEEEESCCCSS-------CCC
T ss_pred CCCEEEEE--eCCCCH-HHHHHHHHHHHHcCccEEEE--ecCCC-ChHHHHHh---cCCCEEEEecccCC-------CCC
Confidence 35665543 334444 33344466677889999998 32221 11122222 78999988654321 122
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEE--EeCC----Cccc
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVI--EFEP----GLTT 165 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~--~~~~----~~~d 165 (458)
..+...+...+..+++.+...|.++++++.... .......+.+.+.+++.|+.+.... .. .-+. +..+
T Consensus 100 ~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~----i~~~~~~~~~~~~~~~ 175 (288)
T 2qu7_A 100 PSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSL----IHYSDQQLGTNAQIYS 175 (288)
T ss_dssp CEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGG----EEECCSSCSHHHHHHH
T ss_pred CEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcce----EEeccCCccccCCHHH
Confidence 344456666777788888888999999998653 3466778899999998885431100 11 1111 1122
Q ss_pred HHHHHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEe-eccccccCCCCCeeEEEEecCCCchhHHHHHHH
Q psy17441 166 FKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIV-TEQALTAKNVPVGIIGLKLVNATNEDAHIRDSI 244 (458)
Q Consensus 166 ~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~-t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv 244 (458)
-...++++.+.++++|++ .+...+..+++++++.|+.-++.+-++ .|...........+..+.. .....++.|+
T Consensus 176 ~~~~~~~~l~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~~~~~~~p~lttv~~----~~~~~g~~a~ 250 (288)
T 2qu7_A 176 GYEATKTLLSKGIKGIVA-TNHLLLLGALQAIKESEKEIKKDVIIVGFDDSYWNEIYTPKLTVISQ----PVKEMGQVAA 250 (288)
T ss_dssp HHHHHHHHHHTTCCEEEE-CSHHHHHHHHHHHHHSSCCBTTTBEEEEESCCTHHHHSSSCCCEEEC----CHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEE-CCcHHHHHHHHHHHHhCCCCCCceEEEEeCChHHHhhcCCCccEEec----CHHHHHHHHH
Confidence 233444443337787765 455668889999999998754444443 3332211111112222221 2345667777
Q ss_pred HHHHHHH
Q psy17441 245 YVLTSAL 251 (458)
Q Consensus 245 ~~la~Al 251 (458)
.++...+
T Consensus 251 ~~l~~~i 257 (288)
T 2qu7_A 251 KMIYKLI 257 (288)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665554
No 73
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=97.26 E-value=0.00048 Score=64.60 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=53.1
Q ss_pred cccccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcccceeEEee
Q psy17441 334 DALNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 391 (458)
Q Consensus 334 ~~~~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yta~l~s~lt 391 (458)
...++.+++||++.++++-|+++..|.+..||+++++|.++++.++..+.++++..+.
T Consensus 112 ~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~ 169 (309)
T 3um7_A 112 SAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLG 169 (309)
T ss_dssp -CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999999999999999999999999998887763
No 74
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=97.25 E-value=0.027 Score=52.49 Aligned_cols=217 Identities=10% Similarity=-0.057 Sum_probs=123.6
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+. +....++ +......+.+...++.+||-. +.... .......-+...++|+|......+. . +.+.
T Consensus 34 g~~~~~~-~~~~~~~-~~~~~~i~~l~~~~vdgiIi~-~~~~~-~~~~~~~~~~~~~iPvV~~~~~~~~---~---~~~~ 103 (305)
T 3g1w_A 34 NVTVEYR-GAAQYDI-QEQITVLEQAIAKNPAGIAIS-AIDPV-ELTDTINKAVDAGIPIVLFDSGAPD---S---HAHS 103 (305)
T ss_dssp TCEEEEE-ECSSSCH-HHHHHHHHHHHHHCCSEEEEC-CSSTT-TTHHHHHHHHHTTCCEEEESSCCTT---S---CCSC
T ss_pred CCEEEEe-CCCcCCH-HHHHHHHHHHHHhCCCEEEEc-CCCHH-HHHHHHHHHHHCCCcEEEECCCCCC---C---ceeE
Confidence 5555442 2334444 333444566667888888862 32221 2234455566789999988764321 1 1223
Q ss_pred ecCCCchhHHHHHHHHHHhc--CCeEEEEEEecCc-chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKHF--NYMKVIFIHSSDT-DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLY 171 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~--~w~~v~ii~~~d~-~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~ 171 (458)
.+.+.+...+..+++.+... |-++++++...+. ......+.+++.+++.|+.+ .+.....-..+..+....+.
T Consensus 104 ~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 179 (305)
T 3g1w_A 104 FLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKETLEAEFPAI----EVIAVEDGRGDSLHSRRVAH 179 (305)
T ss_dssp EEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHCTTE----EEEEEEECTTCHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHHHHHhhCCCC----EEEEEecCCCCHHHHHHHHH
Confidence 34567777777888888777 9999999985543 34567888999998877443 22222222223334445555
Q ss_pred HHHhcc--CeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeecccccc-CCCCCee--EEEEecCCCchhHHHHHHHHH
Q psy17441 172 EMKNAQ--ARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTA-KNVPVGI--IGLKLVNATNEDAHIRDSIYV 246 (458)
Q Consensus 172 ~ik~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~-~~~~~g~--~g~~~~~~~~~~~~~yDAv~~ 246 (458)
++.+.. +++|+ +.+...+..+++++++.|+. ++...+..|..... ..+..+. ..+.. .....++.|+.+
T Consensus 180 ~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~di~vig~d~~~~~~~~~~~~~l~ttv~~----~~~~~g~~av~~ 253 (305)
T 3g1w_A 180 QLLEDYPNLAGIF-ATEANGGVGVGDAVRLESRA-GEIQIISFDTDKGTLDLVDEGIISATLAQ----GTWNMGYWSLTY 253 (305)
T ss_dssp HHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEESCCHHHHHHHHTTSSCEEEEE----CHHHHHHHHHHH
T ss_pred HHHHhCCCceEEE-ECCCcchhhHHHHHHhcCCC-CCeEEEEeCCCHHHHHHHHcCceEEEEec----ChHHHHHHHHHH
Confidence 554443 34443 45556788899999999997 44555555543211 1112232 22222 234466667666
Q ss_pred HHHHH
Q psy17441 247 LTSAL 251 (458)
Q Consensus 247 la~Al 251 (458)
+...+
T Consensus 254 l~~~i 258 (305)
T 3g1w_A 254 LFHLH 258 (305)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65544
No 75
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=97.24 E-value=0.03 Score=52.79 Aligned_cols=184 Identities=13% Similarity=0.081 Sum_probs=103.9
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+.. ....++.. .....+.++.++|.+||- .|..+. ....+...+...+||+|.+....+ ... ...+
T Consensus 33 g~~~~~~~-~~~~d~~~-q~~~i~~li~~~vdgiii-~~~~~~-~~~~~~~~a~~~gipvV~~d~~~~---~~~--~~~~ 103 (316)
T 1tjy_A 33 GIDVTYDG-PTEPSVSG-QVQLVNNFVNQGYDAIIV-SAVSPD-GLCPALKRAMQRGVKILTWDSDTK---PEC--RSYY 103 (316)
T ss_dssp TCEEEECC-CSSCCHHH-HHHHHHHHHHTTCSEEEE-CCSSSS-TTHHHHHHHHHTTCEEEEESSCCC---GGG--CSEE
T ss_pred CCEEEEEC-CCCCCHHH-HHHHHHHHHHcCCCEEEE-eCCCHH-HHHHHHHHHHHCcCEEEEecCCCC---CCC--ceEE
Confidence 44444321 23444433 334466677889988775 144332 334455566778999999865321 111 1223
Q ss_pred ecCCCchhHHHHHHHHHHh---cCCeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKH---FNYMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQ 169 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~---~~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~ 169 (458)
.....+...+...++.|.. .|-++++++... +.......+.+.+.+++.+. ++.+........+..+....
T Consensus 104 v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~ 179 (316)
T 1tjy_A 104 INQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHP----GWEIVTTQFGYNDATKSLQT 179 (316)
T ss_dssp EESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCT----TEEEEEEEECTTCHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHHHHHHHhhCC----CcEEEEeccCCCCHHHHHHH
Confidence 2245555566777777655 578999999843 33456777888888876531 13332222222233444555
Q ss_pred HHHHHhcc--CeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeecc
Q psy17441 170 LYEMKNAQ--ARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQ 214 (458)
Q Consensus 170 l~~ik~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~ 214 (458)
++++.+.. +++|++ .+...+..+++++++.| . ++...+..|.
T Consensus 180 ~~~ll~~~~~~~aI~~-~nD~~A~g~~~al~~~G-~-~dv~VvG~D~ 223 (316)
T 1tjy_A 180 AEGIIKAYPDLDAIIA-PDANALPAAAQAAENLK-R-NNLAIVGFST 223 (316)
T ss_dssp HHHHHHHCSSCCEEEE-CSTTHHHHHHHHHHHTT-C-CSCEEEEBCC
T ss_pred HHHHHHhCCCCCEEEE-CCCccHHHHHHHHHHcC-C-CCEEEEEeCC
Confidence 66655443 455544 45567888899999999 5 3344444443
No 76
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=97.22 E-value=0.00055 Score=64.89 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=54.5
Q ss_pred cccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcccceeEEeeecc
Q psy17441 336 LNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLER 394 (458)
Q Consensus 336 ~~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yta~l~s~lt~~~ 394 (458)
.++.+++||++.++++-|+|+..|.+..||+++.+++++++++++.-++.+++.++.++
T Consensus 77 ~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 77 AGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp TTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred cchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999988876654
No 77
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=97.21 E-value=0.00055 Score=69.55 Aligned_cols=56 Identities=16% Similarity=0.329 Sum_probs=51.9
Q ss_pred cccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcccceeEEee
Q psy17441 336 LNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 391 (458)
Q Consensus 336 ~~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yta~l~s~lt 391 (458)
.++.+++||++.++++.|+++..|.+..||+++++++++++++++.++|.+.+-+.
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~ 429 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFN 429 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999998886543
No 78
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.20 E-value=0.11 Score=48.09 Aligned_cols=213 Identities=9% Similarity=0.017 Sum_probs=123.6
Q ss_pred cceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 14 KGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
.|+++.+...+++.. .....+.+...+|.+||-. +... ....+ ..+.. ++|+|..+...+ + ...+
T Consensus 40 ~g~~~~~~~~~~~~~----~~~~~~~l~~~~vdgiIi~-~~~~--~~~~~-~~~~~-~iPvV~i~~~~~---~-~~~~-- 104 (289)
T 3k9c_A 40 RGYDVMLSAVAPSRA----EKVAVQALMRERCEAAILL-GTRF--DTDEL-GALAD-RVPALVVARASG---L-PGVG-- 104 (289)
T ss_dssp TTCEEEEEEEBTTBC----HHHHHHHHTTTTEEEEEEE-TCCC--CHHHH-HHHHT-TSCEEEESSCCS---S-TTSE--
T ss_pred CCCEEEEEeCCCCHH----HHHHHHHHHhCCCCEEEEE-CCCC--CHHHH-HHHHc-CCCEEEEcCCCC---C-CCCC--
Confidence 366666554333322 2334555667899999973 3222 22333 33445 999998765432 1 1122
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecCc-chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDT-DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYE 172 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~-~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ 172 (458)
.+...+..-+..+++.|...|.++++++..... ......+.+++.+++.|+.+.. . ......+..+-...+++
T Consensus 105 -~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~--~---~~~~~~~~~~~~~~~~~ 178 (289)
T 3k9c_A 105 -AVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASA--T---VVTGGTTETEGAEGMHT 178 (289)
T ss_dssp -EEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGE--E---EECCCSSHHHHHHHHHH
T ss_pred -EEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCc--c---EEECCCCHHHHHHHHHH
Confidence 334566666777788888889999999986543 4557789999999998865411 1 11112233344455566
Q ss_pred HHh--ccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEe-eccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHH
Q psy17441 173 MKN--AQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIV-TEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTS 249 (458)
Q Consensus 173 ik~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~-t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~ 249 (458)
+.+ ..+++|++ ++...+..+++++++.|+.-++.+-|+ -|..........++..+.. .....++.|+.++..
T Consensus 179 ~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~vig~D~~~~~~~~~p~lttv~~----~~~~~g~~a~~~l~~ 253 (289)
T 3k9c_A 179 LLEMPTPPTAVVA-FNDRCATGVLDLLVRSGRDVPADISVVGYDDSRLARIPHVQMTTISQ----DATHMAEAAVDGALA 253 (289)
T ss_dssp HHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCTTTTCTTTCCEEEEC----CHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEEECCHHHHhcCCCCcceEec----CHHHHHHHHHHHHHH
Confidence 554 34566554 556678889999999999755444443 3332222222233333332 234567777777665
Q ss_pred HHH
Q psy17441 250 ALK 252 (458)
Q Consensus 250 Al~ 252 (458)
.++
T Consensus 254 ~i~ 256 (289)
T 3k9c_A 254 QIS 256 (289)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 79
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=97.19 E-value=0.021 Score=54.24 Aligned_cols=214 Identities=11% Similarity=-0.002 Sum_probs=118.5
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+. +...++ +......+.+...++.+||. ..... ....+ ..+...++|+|..+...+ + ...+
T Consensus 93 g~~~~~~--~~~~~~-~~~~~~~~~l~~~~vdgiI~--~~~~~-~~~~~-~~l~~~~iPvV~~~~~~~---~-~~~~--- 158 (332)
T 2o20_A 93 KYNMILA--NSDNDV-EKEEKVLETFLSKQVDGIVY--MGSSL-DEKIR-TSLKNSRTPVVLVGTIDG---D-KEIP--- 158 (332)
T ss_dssp TCEEEEE--ECTTCH-HHHHHHHHHHHHTTCSEEEE--CSSCC-CHHHH-HHHHHHCCCEEEESCCCT---T-SCSC---
T ss_pred CCEEEEE--ECCCCh-HHHHHHHHHHHhCCCCEEEE--eCCCC-CHHHH-HHHHhCCCCEEEEccccC---C-CCCC---
Confidence 4554433 233343 22334455666788999997 32221 22233 334467999998865322 1 1122
Q ss_pred ecCCCchhHHHHHHHHHHhcCCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKHFNYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYE 172 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ 172 (458)
.+...+..-+..+++.|...|.++++++.... .......+.+.+.+++.|+.+.... ...-+.+..+-...+++
T Consensus 159 ~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~----~~~~~~~~~~~~~~~~~ 234 (332)
T 2o20_A 159 SVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENL----VFEGNYSYEQGKALAER 234 (332)
T ss_dssp EEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGG----EECSCCSHHHHHHHHHH
T ss_pred EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhh----EEeCCCCHHHHHHHHHH
Confidence 23455555567778888888999999998653 2456778899999999885431100 11111122223344455
Q ss_pred HHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEe-eccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHHHH
Q psy17441 173 MKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIV-TEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSAL 251 (458)
Q Consensus 173 ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~-t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~Al 251 (458)
+.+..+++|++ ++...+..+++++++.|+.-++.+-++ -|...........+..+.. .....++-|+.++...+
T Consensus 235 ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvig~D~~~~~~~~~p~lttv~~----~~~~~g~~a~~~l~~~i 309 (332)
T 2o20_A 235 LLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQ----PLYDLGAVAMRLLTKLM 309 (332)
T ss_dssp HHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEEESSCCGGGGSBSSCCEEEEC----CHHHHHHHHHHHHHHHH
T ss_pred HhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEEEEeCChHHHhhCCCceEEEee----CHHHHHHHHHHHHHHHh
Confidence 43337787776 455678889999999999755444444 3332222111122322221 23345666666665444
No 80
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=97.18 E-value=0.015 Score=53.97 Aligned_cols=213 Identities=8% Similarity=0.031 Sum_probs=119.9
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+.. ...+.. ......+.+.+.++.+||-. +.... ........+...++|+|..+...+. . +.+.
T Consensus 38 g~~~~~~~--~~~~~~-~~~~~~~~l~~~~vdgiI~~-~~~~~-~~~~~~~~~~~~~iPvV~~~~~~~~---~---~~~~ 106 (293)
T 3l6u_A 38 KYEALVAT--SQNSRI-SEREQILEFVHLKVDAIFIT-TLDDV-YIGSAIEEAKKAGIPVFAIDRMIRS---D---AVVS 106 (293)
T ss_dssp TCEEEEEE--CSSCHH-HHHHHHHHHHHTTCSEEEEE-CSCTT-TTHHHHHHHHHTTCCEEEESSCCCC---T---TCSE
T ss_pred CCEEEEEC--CCCCHH-HHHHHHHHHHHcCCCEEEEe-cCChH-HHHHHHHHHHHcCCCEEEecCCCCC---C---ccee
Confidence 55555443 344442 23444566767888888863 32222 2224455666779999998764331 1 1223
Q ss_pred ecCCCchhHHHHHHHHHHh-c-CCe-----EEEEEEecC--cchhHHHHHHHHhhhcc-CCcceeeEEEEEEEEeCCCcc
Q psy17441 95 RTVPPYSHQADVWVELLKH-F-NYM-----KVIFIHSSD--TDGRALLGRFQTTSQNQ-EDDVEIKVQVEAVIEFEPGLT 164 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~-~-~w~-----~v~ii~~~d--~~g~~~~~~l~~~l~~~-gi~v~~~~~v~~~~~~~~~~~ 164 (458)
.+...+...+..+++.+.. . |-+ +++++.... .......+.+.+.+++. | +.+........+..
T Consensus 107 ~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g------~~~~~~~~~~~~~~ 180 (293)
T 3l6u_A 107 SITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPT------LSIVDSVSGNYDPV 180 (293)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTT------EEEEEEEECTTCHH
T ss_pred EEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCC------cEEeeeccCCCCHH
Confidence 3445666667777777666 5 666 999998543 34557789999999987 7 33332222222334
Q ss_pred cHHHHHHHHHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccCC-CCCe--eEEEEecCCCchhHH
Q psy17441 165 TFKDQLYEMKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKN-VPVG--IIGLKLVNATNEDAH 239 (458)
Q Consensus 165 d~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~~-~~~g--~~g~~~~~~~~~~~~ 239 (458)
+....++++.+. .+++|+ +++...+..+++++++.|+. +...+..|....... +..| ...+.. .....
T Consensus 181 ~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~--di~vig~d~~~~~~~~~~~~~~lttv~~----~~~~~ 253 (293)
T 3l6u_A 181 TSERVMRQVIDSGIPFDAVY-CHNDDIAMGVLEALKKAKIS--GKIVVGIDGNRAILEAVDMKSMDATVVQ----SAEEM 253 (293)
T ss_dssp HHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCC--CCEEEEEECCHHHHHHHHTTSSCEEEEC----CHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEE-ECCchHHHHHHHHHHhCCCC--CeEEEEecCCHHHHHHHHcCCccEEEeC----CHHHH
Confidence 445555665543 355554 45566788899999999986 344444443322111 1112 222221 23446
Q ss_pred HHHHHHHHHHHH
Q psy17441 240 IRDSIYVLTSAL 251 (458)
Q Consensus 240 ~yDAv~~la~Al 251 (458)
++.|+.++...+
T Consensus 254 g~~a~~~l~~~i 265 (293)
T 3l6u_A 254 MKVAFSALKLHT 265 (293)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 81
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=97.17 E-value=0.027 Score=53.33 Aligned_cols=180 Identities=9% Similarity=0.036 Sum_probs=104.7
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCch-HHHHHhhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSP-AAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~-~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
|+++.+. +...++.. .....+.+.+.+|.+||. ..... .. ......+...++|+|......+ +. +.+
T Consensus 36 g~~l~i~--~~~~~~~~-~~~~i~~l~~~~vdgiIi--~~~~~-~~~~~~~~~~~~~~iPvV~~~~~~~---~~---~~~ 103 (325)
T 2x7x_A 36 GVSVEIR--SAGDDNSK-QAEDVHYFMDEGVDLLII--SANEA-APMTPIVEEAYQKGIPVILVDRKIL---SD---KYT 103 (325)
T ss_dssp SCEEEEE--ECTTCHHH-HHHHHHHHHHTTCSEEEE--CCSSH-HHHHHHHHHHHHTTCCEEEESSCCS---SS---CSS
T ss_pred CcEEEEe--CCCCCHHH-HHHHHHHHHHcCCCEEEE--eCCCH-HHHHHHHHHHHHCCCeEEEeCCCCC---Cc---cee
Confidence 6665544 33444433 334456676789999997 33321 11 2333445567999998865322 11 122
Q ss_pred eecCCCchhHHHHHHHHHHhc--CCeEEEEEEecC--cchhHHHHHHHHhhhcc-CCcceeeEEEEEEEEeCCCcccHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHF--NYMKVIFIHSSD--TDGRALLGRFQTTSQNQ-EDDVEIKVQVEAVIEFEPGLTTFKD 168 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~--~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~-gi~v~~~~~v~~~~~~~~~~~d~~~ 168 (458)
..+...+...+..+++.+... |.++++++.... .......+.+.+.+++. | +.+........+..+-..
T Consensus 104 ~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg------~~~~~~~~~~~~~~~~~~ 177 (325)
T 2x7x_A 104 AYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGFMAAISKFPD------IKLIDKADAAWERGPAEI 177 (325)
T ss_dssp EEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHHHHHHHTCTE------EEEEEEEECTTSHHHHHH
T ss_pred EEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCC------CEEEeeecCCCCHHHHHH
Confidence 233456666667777777664 999999998653 34567788899999887 6 333222211212233344
Q ss_pred HHHHHHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeecc
Q psy17441 169 QLYEMKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQ 214 (458)
Q Consensus 169 ~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~ 214 (458)
.++++.+. .+++|++ .+...+..+++++++.|+ .++-..+..|.
T Consensus 178 ~~~~ll~~~~~~~aI~~-~nd~~A~g~~~al~~~Gi-p~dv~vig~D~ 223 (325)
T 2x7x_A 178 EMDSMLRRHPKIDAVYA-HNDRIAPGAYQAAKMAGR-EKEMIFVGIDA 223 (325)
T ss_dssp HHHHHHHHCSCCCEEEE-SSTTHHHHHHHHHHHTTC-TTSSEEEEEEC
T ss_pred HHHHHHHhCCCCCEEEE-CCCchHHHHHHHHHHcCC-CCCeEEEEECC
Confidence 55555443 4666664 455567888999999996 33344444443
No 82
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=97.15 E-value=0.047 Score=50.60 Aligned_cols=215 Identities=12% Similarity=0.039 Sum_probs=120.8
Q ss_pred cceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 14 KGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
.|+++.+. +...++ +......+.+.+.+|.+||- ..... ....+ ..+...++|+|..+...+ +. .+
T Consensus 45 ~g~~~~~~--~~~~~~-~~~~~~~~~l~~~~vdgiIi--~~~~~-~~~~~-~~l~~~~iPvV~~~~~~~---~~----~~ 110 (289)
T 2fep_A 45 YKYNIILS--NSDQNM-EKELHLLNTMLGKQVDGIVF--MGGNI-TDEHV-AEFKRSPVPIVLAASVEE---QE----ET 110 (289)
T ss_dssp TTCEEEEE--ECTTCH-HHHHHHHHHHHHTTCSEEEE--CCSCC-CHHHH-HHHHHSSSCEEEESCCCT---TC----CS
T ss_pred cCCEEEEE--eCCCCH-HHHHHHHHHHHhCCCCEEEE--ecCCC-CHHHH-HHHHhcCCCEEEEccccC---CC----CC
Confidence 35555443 334444 33344456676789999987 32221 22233 334568999998865322 11 12
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecC-c--chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSD-T--DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQL 170 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d-~--~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l 170 (458)
..+...+..-+..+++.|...|.++++++.... + ......+.+++.+++.|+.+.... ...-+.+..+-...+
T Consensus 111 ~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~----~~~~~~~~~~~~~~~ 186 (289)
T 2fep_A 111 PSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQF----VAEGDYTYDSGLEAL 186 (289)
T ss_dssp CEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGG----EEECCSCHHHHHHHH
T ss_pred CEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChhe----EeeCCCCHHHHHHHH
Confidence 233456666677788888888999999998654 2 345678889999998885431110 111111223334555
Q ss_pred HHHHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceE-EEeeccccccCCCCCeeEEEEecCCCchhHHHHHHHHHH
Q psy17441 171 YEMKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYV-WIVTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVL 247 (458)
Q Consensus 171 ~~ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~-wi~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~l 247 (458)
+++.+. .+++|++ ++...+..+++++++.|+.-++.+ .+..|...........+..+.. .....++-|+.++
T Consensus 187 ~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~di~vvg~D~~~~~~~~~p~lttv~~----~~~~~g~~a~~~l 261 (289)
T 2fep_A 187 QHLMSLDKKPTAILS-ATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQ----PTYDIGAVAMRLL 261 (289)
T ss_dssp HHHTTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCGGGTSSSSCCEEEEC----CHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEEEECChHHHhhcCCceeEEeC----CHHHHHHHHHHHH
Confidence 665443 4566654 455678889999999998754444 4444433222211122222221 2345666666666
Q ss_pred HHHH
Q psy17441 248 TSAL 251 (458)
Q Consensus 248 a~Al 251 (458)
...+
T Consensus 262 ~~~i 265 (289)
T 2fep_A 262 TKLM 265 (289)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 83
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=97.15 E-value=0.036 Score=51.85 Aligned_cols=220 Identities=8% Similarity=-0.032 Sum_probs=119.1
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+. +...++.. .....+.+...+|.+||. ..............+...++|+|......+.. +.. +.+.
T Consensus 32 g~~l~~~--~~~~~~~~-~~~~i~~l~~~~vdgiIi--~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-~~~--~~~~ 103 (306)
T 2vk2_A 32 GITLKIA--DGQQKQEN-QIKAVRSFVAQGVDAIFI--APVVATGWEPVLKEAKDAEIPVFLLDRSIDVK-DKS--LYMT 103 (306)
T ss_dssp TCEEEEE--ECTTCHHH-HHHHHHHHHHHTCSEEEE--CCSSSSSCHHHHHHHHHTTCCEEEESSCCCCS-CGG--GSSE
T ss_pred CCEEEEe--CCCCCHHH-HHHHHHHHHHcCCCEEEE--eCCChhhHHHHHHHHHHCCCCEEEecCCCCCC-Ccc--ceEE
Confidence 5555443 33444433 334456666788999887 32221011233444556899999876533211 100 1233
Q ss_pred ecCCCchhHHHHHHHHHHhcC---CeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKHFN---YMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQ 169 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~~---w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~ 169 (458)
.+...+..-+..+++.|...| -++++++.... .......+.+++.+++.|+ ..+.....-..+..+-...
T Consensus 104 ~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-----~~~~~~~~~~~~~~~~~~~ 178 (306)
T 2vk2_A 104 TVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN-----IKIIRSQSGDFTRSKGKEV 178 (306)
T ss_dssp EEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCTT-----EEEEEEEECTTCHHHHHHH
T ss_pred EEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHHHHHHHhhCCC-----eEEEEeccCCCcHHHHHHH
Confidence 344566666677777776665 79999998653 3456778899999998872 1222111112122333445
Q ss_pred HHHHHh-----ccCeEEEEEeChhhHHHHHHHHHhcCCcccceE-EEeeccccccC-CCCC-eeEEEEecCCCchhHHHH
Q psy17441 170 LYEMKN-----AQARVYLMYASKQDAEIIFKDAQYLNMTETGYV-WIVTEQALTAK-NVPV-GIIGLKLVNATNEDAHIR 241 (458)
Q Consensus 170 l~~ik~-----~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~-wi~t~~~~~~~-~~~~-g~~g~~~~~~~~~~~~~y 241 (458)
++++.+ ..+++|++ .+...+..+++++++.|+.-++.+ .+..|...... .+.. .+.++..... ..++
T Consensus 179 ~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~~~~~~~~~p~lttv~~~~~----~~g~ 253 (306)
T 2vk2_A 179 MESFIKAENNGKNICMVYA-HNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP----NMAG 253 (306)
T ss_dssp HHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEEEEECCHHHHHHHHTTCCCEEEECCS----CCHH
T ss_pred HHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHHHcCCCCCCCeEEEeecCCHHHHHHHHcCCceEEEecCH----HHHH
Confidence 555543 24666654 455678889999999999754444 44444322110 1112 2333433222 2455
Q ss_pred HHHHHHHHHHH
Q psy17441 242 DSIYVLTSALK 252 (458)
Q Consensus 242 DAv~~la~Al~ 252 (458)
-|+.++...++
T Consensus 254 ~a~~~l~~~i~ 264 (306)
T 2vk2_A 254 PAFDALEKYKK 264 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66666655543
No 84
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=97.14 E-value=0.036 Score=52.95 Aligned_cols=222 Identities=9% Similarity=-0.028 Sum_probs=124.3
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhc--CCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCC------C
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLIS--ERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFS------D 86 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~--~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls------~ 86 (458)
|+++.+. +.+.++..... ..+.++. +++.+||-. + ... ....+...+...+||+|......+... .
T Consensus 34 g~~~~~~--~~~~~~~~~~~-~i~~~i~~~~~vDgiIi~-~-~~~-~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~ 107 (350)
T 3h75_A 34 GLDLRIL--YAERDPQNTLQ-QARELFQGRDKPDYLMLV-N-EQY-VAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQS 107 (350)
T ss_dssp TCEEEEE--ECTTCHHHHHH-HHHHHHHSSSCCSEEEEE-C-CSS-HHHHHHHHHTTSCCEEEEEESCCCTTTC------
T ss_pred CCeEEEE--ECCCCHHHHHH-HHHHHHhcCCCCCEEEEe-C-chh-hHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCC
Confidence 5555544 34455543333 3455556 589888862 3 322 445566677789999999887544321 1
Q ss_pred Ccccc-ceeecCCCchhHHHHHHHHHHhcC------C-eEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEE
Q psy17441 87 KNIHV-SFLRTVPPYSHQADVWVELLKHFN------Y-MKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAV 156 (458)
Q Consensus 87 ~~~~p-~~~r~~p~~~~~~~ai~~ll~~~~------w-~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~ 156 (458)
+..|+ ++..+.+.+...+..+++.|...+ - ++++++.... .......+.+++.+++.|+ ..+...
T Consensus 108 ~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-----~~~~~~ 182 (350)
T 3h75_A 108 RQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ-----VHLRQL 182 (350)
T ss_dssp ------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-----EEEEEE
T ss_pred chhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-----eEEEEE
Confidence 11122 244555666777777888776665 5 8999997543 3455678899999998873 222222
Q ss_pred EEeCCCcccHHHHHHHHHhccCeEE-EEEeChhhHHHHHHHHHhcCCcccceEEEe-eccccccC-CCCCe-eEEEEecC
Q psy17441 157 IEFEPGLTTFKDQLYEMKNAQARVY-LMYASKQDAEIIFKDAQYLNMTETGYVWIV-TEQALTAK-NVPVG-IIGLKLVN 232 (458)
Q Consensus 157 ~~~~~~~~d~~~~l~~ik~~~~~vi-il~~~~~~~~~il~~a~~~g~~~~~~~wi~-t~~~~~~~-~~~~g-~~g~~~~~ 232 (458)
..-..+.+.....++++-+..+++- |++++...+..+++++++.|+.-++.+-++ .|...... .+..| +..+.. .
T Consensus 183 ~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~vP~di~vvg~d~~~~~l~~~~~~~lttv~~-~ 261 (350)
T 3h75_A 183 VYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRKPGTDLLFSGVNSSPEALQALIDGKLSVLEA-G 261 (350)
T ss_dssp EECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCCHHHHHHHHHTSSCEEEE-C
T ss_pred eeCCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCCCCCCeEEEecCCCHHHHHHHHcCCeeEEEc-C
Confidence 2222233444455666554444433 334556678889999999999755444444 33322111 11112 222322 1
Q ss_pred CCchhHHHHHHHHHHHHHH
Q psy17441 233 ATNEDAHIRDSIYVLTSAL 251 (458)
Q Consensus 233 ~~~~~~~~yDAv~~la~Al 251 (458)
....++-|+.++...+
T Consensus 262 ---~~~~G~~av~~l~~~l 277 (350)
T 3h75_A 262 ---HFTLGGWALVALHDDA 277 (350)
T ss_dssp ---GGGHHHHHHHHHHHHH
T ss_pred ---chhhHHHHHHHHHHHH
Confidence 2356677777665554
No 85
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=97.11 E-value=0.017 Score=53.80 Aligned_cols=167 Identities=13% Similarity=0.078 Sum_probs=101.7
Q ss_pred EEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCC---C-Cc-ccc
Q psy17441 17 TFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFS---D-KN-IHV 91 (458)
Q Consensus 17 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls---~-~~-~~p 91 (458)
++.+..|+.+.++.+ .....+.+.+++|.+||. ..+. ....+.. ...++|+|..+..++... . .. ...
T Consensus 36 ~v~l~~~~~~~~~~~-~~~~~~~l~~~~vDgII~--~~~~--~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~ 108 (295)
T 3lft_A 36 QVKIDFMNSEGDQSK-VATMSKQLVANGNDLVVG--IATP--AAQGLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGG 108 (295)
T ss_dssp GEEEEEEECTTCHHH-HHHHHHHHTTSSCSEEEE--ESHH--HHHHHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCS
T ss_pred ceEEEEecCCCCHHH-HHHHHHHHHhcCCCEEEE--CCcH--HHHHHHH--cCCCCCEEEEeccChhhcCccccccCCCC
Confidence 666667777777644 445567777889999997 3211 2222222 247899998765443221 0 00 011
Q ss_pred ceeecCCCchhHHHHHHHHHHhc--CCeEEEEEEecCc-chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHH
Q psy17441 92 SFLRTVPPYSHQADVWVELLKHF--NYMKVIFIHSSDT-DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKD 168 (458)
Q Consensus 92 ~~~r~~p~~~~~~~ai~~ll~~~--~w~~v~ii~~~d~-~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~ 168 (458)
.+..+. +..-....++++... |.+++++|+...+ .+....+.+++++++.|+.+ .... .. +..+..+
T Consensus 109 ~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~------~~~~-~~-~~~~~~~ 178 (295)
T 3lft_A 109 NVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTV------ETFA-VP-STNEIAS 178 (295)
T ss_dssp SEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEE------EEEE-ES-SGGGHHH
T ss_pred cEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEE------EEEe-cC-CHHHHHH
Confidence 233322 233355666777776 9999999998754 35667889999999988432 2211 11 3456777
Q ss_pred HHHHHHhccCeEEEEEeChhhHHHHHHHHHhcCC
Q psy17441 169 QLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNM 202 (458)
Q Consensus 169 ~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g~ 202 (458)
.++++.+ ++++|++..+ ..+...++++.+.+.
T Consensus 179 ~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 179 TVTVMTS-KVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHTT-TCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHh-cCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 7777764 6888877543 445556677777764
No 86
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.09 E-value=0.048 Score=51.90 Aligned_cols=216 Identities=10% Similarity=-0.009 Sum_probs=119.7
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcc-cCCcEEeeecCCCCCCCCccccce
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGF-YHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~-~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
|+++.+ ++...++ +......+.+.+.++.+||- ..... . ......... .++|+|..+...+. . +..
T Consensus 88 g~~~~~--~~~~~~~-~~~~~~~~~l~~~~vdgiI~--~~~~~-~-~~~~~~l~~~~~iPvV~~~~~~~~---~---~~~ 154 (340)
T 1qpz_A 88 GYTLIL--GNAWNNL-EKQRAYLSMMAQKRVDGLLV--MCSEY-P-EPLLAMLEEYRHIPMVVMDWGEAK---A---DFT 154 (340)
T ss_dssp TCEEEE--EECTTCH-HHHHHHHHHHHHTTCSEEEE--CCSCC-C-HHHHHHHHTTTTSCEEEEEESSCC---C---SSS
T ss_pred CCEEEE--EeCCCCH-HHHHHHHHHHHcCCCCEEEE--eCCCC-C-hHHHHHHHhhCCCCEEEEecccCC---C---CCC
Confidence 555544 3344444 22334456666788999886 22221 1 223333333 69999988764321 1 111
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLY 171 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~ 171 (458)
..+...+..-+..+++.|...|.+++++|.... .......+.+.+.+++.|+.+... ....-+.+..+-...++
T Consensus 155 ~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~----~~~~~~~~~~~~~~~~~ 230 (340)
T 1qpz_A 155 DAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPES----WIVQGDFEPESGYRAMQ 230 (340)
T ss_dssp EEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGG----GBCCCCSSHHHHHHHHH
T ss_pred CEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChh----heEeCCCCHHHHHHHHH
Confidence 233455555667777888778999999997543 245677889999999988543110 00000112223344555
Q ss_pred HHHh--ccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEE-eeccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHH
Q psy17441 172 EMKN--AQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWI-VTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLT 248 (458)
Q Consensus 172 ~ik~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi-~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la 248 (458)
++.+ ..+++|++ .+...+..+++++++.|+.-++.+-+ .-|.......+..++..+.. .....++-|+.++.
T Consensus 231 ~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~disvig~D~~~~~~~~~p~lttv~~----~~~~~g~~a~~~l~ 305 (340)
T 1qpz_A 231 QILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQ----PKDSLGETAFNMLL 305 (340)
T ss_dssp HHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCTTGGGSSSCCEEEEC----CHHHHHHHHHHHHH
T ss_pred HHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEEeECCchHhhccCCceeEEec----CHHHHHHHHHHHHH
Confidence 5554 34666665 45567888999999999975544444 33432222122234433332 23456677776665
Q ss_pred HHHH
Q psy17441 249 SALK 252 (458)
Q Consensus 249 ~Al~ 252 (458)
..++
T Consensus 306 ~~i~ 309 (340)
T 1qpz_A 306 DRIV 309 (340)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5543
No 87
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=97.08 E-value=0.045 Score=51.85 Aligned_cols=199 Identities=11% Similarity=0.030 Sum_probs=113.8
Q ss_pred HHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHH
Q psy17441 33 ALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLK 112 (458)
Q Consensus 33 ~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~ 112 (458)
.....+.+...++.+||. ..... .. .....+...++|+|......+ + ...+ .+...+..-+..+++.|.
T Consensus 105 ~~~~~~~l~~~~vdgiI~--~~~~~-~~-~~~~~l~~~~iPvV~~~~~~~---~-~~~~---~V~~D~~~~~~~a~~~L~ 173 (332)
T 2hsg_A 105 ELHLLNNMLGKQVDGIIF--MSGNV-TE-EHVEELKKSPVPVVLAASIES---T-NQIP---SVTIDYEQAAFDAVQSLI 173 (332)
T ss_dssp HHHHHHHTSCCSSCCEEE--CCSSC-CH-HHHHHHTTSSSCEEEESCCCS---C-TTSC---EEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcEEEE--ecCCC-CH-HHHHHHHhCCCCEEEEccccC---C-CCCC---EEEEChHHHHHHHHHHHH
Confidence 344456666788999987 32221 22 333445568999998765322 1 1122 233455555667778888
Q ss_pred hcCCeEEEEEEecC-c--chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhc--cCeEEEEEeCh
Q psy17441 113 HFNYMKVIFIHSSD-T--DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNA--QARVYLMYASK 187 (458)
Q Consensus 113 ~~~w~~v~ii~~~d-~--~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~--~~~viil~~~~ 187 (458)
..|.+++++|.... + ......+.+.+.+++.|+.+.... ...-+.+..+-...++++.+. .+++|++ .+.
T Consensus 174 ~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~----~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd 248 (332)
T 2hsg_A 174 DSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSY----IVEGDYTYDSGIEAVEKLLEEDEKPTAIFV-GTD 248 (332)
T ss_dssp TTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGG----EEECCSSHHHHHHHHHHHHHSSSCCSEEEE-SSH
T ss_pred HCCCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChhe----EEeCCCCHHHHHHHHHHHHcCCCCCeEEEE-CCh
Confidence 88999999998654 2 355678899999999885431110 111111223334555665543 4667664 566
Q ss_pred hhHHHHHHHHHhcCCcccceE-EEeeccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHHHH
Q psy17441 188 QDAEIIFKDAQYLNMTETGYV-WIVTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSAL 251 (458)
Q Consensus 188 ~~~~~il~~a~~~g~~~~~~~-wi~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~Al 251 (458)
..+..+++++++.|+.-++.+ .+.-|...........+..+.. .....++-|+.++...+
T Consensus 249 ~~A~g~~~al~~~G~~vP~disvvg~D~~~~~~~~~p~lttv~~----~~~~~g~~a~~~l~~~i 309 (332)
T 2hsg_A 249 EMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQ----PMYDIGAVAMRLLTKYM 309 (332)
T ss_dssp HHHHHHHHHHHHTTCCHHHHCEEEEESCCGGGGSSSSCCEEEEC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEECChHHHhccCCceeEEEC----CHHHHHHHHHHHHHHHh
Confidence 678889999999998744444 4444433222112223332321 23345666666655444
No 88
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=97.07 E-value=0.01 Score=55.37 Aligned_cols=176 Identities=9% Similarity=-0.001 Sum_probs=103.2
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+...+...++.. .....+.++..++.+||-. |.... .......-+. .+||+|......+... ....+.+.
T Consensus 35 g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vdgiii~-~~~~~-~~~~~~~~~~-~~iPvV~~~~~~~~~~-~~~~~~~~ 109 (304)
T 3o1i_D 35 GVNLRVLEAGGYPNKSR-QEQQLALCTQWGANAIILG-TVDPH-AYEHNLKSWV-GNTPVFATVNQLDLDE-EQSTLLKG 109 (304)
T ss_dssp TCEEEEEECSSTTCHHH-HHHHHHHHHHHTCSEEEEC-CSSTT-SSTTTHHHHT-TTSCEEECSSCCCCCT-TTGGGEEE
T ss_pred CCeEEEEcCCCCCCHHH-HHHHHHHHHHcCCCEEEEe-CCChh-HHHHHHHHHc-CCCCEEEecCCCcccc-cCCCceEE
Confidence 56665554333225433 3444566767888888852 32221 1122233445 8999998855332111 11124455
Q ss_pred ecCCCchhHHHHHHHHHHhcC-----CeEEEEEEecCc--chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHH
Q psy17441 95 RTVPPYSHQADVWVELLKHFN-----YMKVIFIHSSDT--DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFK 167 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~~-----w~~v~ii~~~d~--~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~ 167 (458)
.+.+.+..-+..+++.+...+ -++++++..... ......+.+++.+++.| +.+........+.....
T Consensus 110 ~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~------~~~~~~~~~~~~~~~~~ 183 (304)
T 3o1i_D 110 EVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPVTTGFYEAIKNSD------IHIVDSFWADNDKELQR 183 (304)
T ss_dssp ECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHHHHHHHHTTTTBT------EEEEECCCCCSCHHHHH
T ss_pred EEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHHHHHHHHHHhcCC------CEEEEeecCCCcHHHHH
Confidence 566777777778888888888 899999975432 45567899999999877 33322211111222233
Q ss_pred HHHHHH-HhccCeEEEEEeChhhHHHHHHHHHhcCCc
Q psy17441 168 DQLYEM-KNAQARVYLMYASKQDAEIIFKDAQYLNMT 203 (458)
Q Consensus 168 ~~l~~i-k~~~~~viil~~~~~~~~~il~~a~~~g~~ 203 (458)
..++++ +...+++ + +++...+..+++++++.|+.
T Consensus 184 ~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 184 NLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 344433 3345677 4 45677888999999999987
No 89
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=97.06 E-value=0.065 Score=49.38 Aligned_cols=180 Identities=13% Similarity=0.126 Sum_probs=101.5
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+ ++...++.. .....+.+++.+|.+||-. |.... ........+...++|+|......+ +....+
T Consensus 31 g~~~~~--~~~~~~~~~-~~~~i~~l~~~~vdgiIi~-~~~~~-~~~~~~~~~~~~~iPvV~~~~~~~---~~~~~~--- 99 (283)
T 2ioy_A 31 GYKIIV--EDSQNDSSK-ELSNVEDLIQQKVDVLLIN-PVDSD-AVVTAIKEANSKNIPVITIDRSAN---GGDVVC--- 99 (283)
T ss_dssp TCEEEE--EECTTCHHH-HHHHHHHHHHTTCSEEEEC-CSSTT-TTHHHHHHHHHTTCCEEEESSCCS---SSCCSE---
T ss_pred CcEEEE--ecCCCCHHH-HHHHHHHHHHcCCCEEEEe-CCchh-hhHHHHHHHHHCCCeEEEecCCCC---CcceeE---
Confidence 555544 334444433 3334566668889888862 32221 222333445678999998765321 111112
Q ss_pred ecCCCchhHHHHHHHHHHhc-C-CeEEEEEEecC--cchhHHHHHHHHhhhcc-CCcceeeEEEEEEEEeCCCcccHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKHF-N-YMKVIFIHSSD--TDGRALLGRFQTTSQNQ-EDDVEIKVQVEAVIEFEPGLTTFKDQ 169 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~-~-w~~v~ii~~~d--~~g~~~~~~l~~~l~~~-gi~v~~~~~v~~~~~~~~~~~d~~~~ 169 (458)
.+...+..-+..+++.|... | -++++++.... .......+.+++.+++. | +.+........+..+-...
T Consensus 100 ~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~------~~~~~~~~~~~~~~~~~~~ 173 (283)
T 2ioy_A 100 HIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPD------IKIVAKQAADFDRSKGLSV 173 (283)
T ss_dssp EEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTT------EEEEEEEECTTCHHHHHHH
T ss_pred EEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCC------CEEEeeccCCCCHHHHHHH
Confidence 22344555566677766555 5 89999998543 23456788899999887 6 3322222112223333445
Q ss_pred HHHHHhcc--CeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeecc
Q psy17441 170 LYEMKNAQ--ARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQ 214 (458)
Q Consensus 170 l~~ik~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~ 214 (458)
++++.+.. +++|+ +++...+..+++++++.|+ ++-..+.-|.
T Consensus 174 ~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~--~di~viG~D~ 217 (283)
T 2ioy_A 174 MENILQAQPKIDAVF-AQNDEMALGAIKAIEAANR--QGIIVVGFDG 217 (283)
T ss_dssp HHHHHHHCSCCCEEE-ESSHHHHHHHHHHHHHTTC--CCCEEEEEEC
T ss_pred HHHHHHhCCCccEEE-ECCchHHHHHHHHHHHCCC--CCcEEEEeCC
Confidence 55554433 45544 4555678889999999998 3445555554
No 90
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=97.05 E-value=0.039 Score=51.48 Aligned_cols=176 Identities=9% Similarity=-0.002 Sum_probs=103.7
Q ss_pred ce-EEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 15 GV-TFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 15 ~~-~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
|+ ++.+. +...++. ......+.+.++++.+||. ..............+...++|+|......+.. +...++.+
T Consensus 32 g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~vdgiii--~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-~~~~~~~~ 105 (309)
T 2fvy_A 32 PDVQLLMN--DSQNDQS-KQNDQIDVLLAKGVKALAI--NLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK-ALDSYDKA 105 (309)
T ss_dssp TTEEEEEE--ECTTCHH-HHHHHHHHHHHTTCSEEEE--CCSSGGGHHHHHHHHHTTTCCEEEESSCCCHH-HHHTCTTE
T ss_pred CCeEEEEe--cCCCCHH-HHHHHHHHHHHcCCCEEEE--eCCCcchhHHHHHHHHHCCCcEEEecCCCCcc-cccccCcc
Confidence 43 54443 3444443 3344456676789999987 32221022344455667899999886532211 00012344
Q ss_pred eecCCCchhHHHHHHHHHHh------------cCCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEe
Q psy17441 94 LRTVPPYSHQADVWVELLKH------------FNYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEF 159 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~------------~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~ 159 (458)
..+...+...+..+++.+.. .|-++++++.... .......+.+++.+++.|+.+ .......-
T Consensus 106 ~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~----~~~~~~~~ 181 (309)
T 2fvy_A 106 YYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT----EQLQLDTA 181 (309)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCE----EEEEEEEC
T ss_pred EEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCce----EEEEEecC
Confidence 45566777777777777766 6888999998543 345677889999999988443 11111111
Q ss_pred CCCcccHHHHHHHHHhc----cCeEEEEEeChhhHHHHHHHHHhcC
Q psy17441 160 EPGLTTFKDQLYEMKNA----QARVYLMYASKQDAEIIFKDAQYLN 201 (458)
Q Consensus 160 ~~~~~d~~~~l~~ik~~----~~~viil~~~~~~~~~il~~a~~~g 201 (458)
..+..+-...++++.+. .+++|++ ++...+..+++++++.|
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 182 MWDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAMGAVEALKAHN 226 (309)
T ss_dssp TTCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHHHHHHHHHHcC
Confidence 22233334555665443 4666665 45667888999999998
No 91
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=97.01 E-value=0.039 Score=51.02 Aligned_cols=213 Identities=9% Similarity=-0.083 Sum_probs=120.2
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+. +...++.. .....+.+...++.+||-. |..+. ........+...++|+|......+ + .+.
T Consensus 35 g~~~~~~--~~~~~~~~-~~~~~~~l~~~~vdgiIi~-~~~~~-~~~~~~~~~~~~~iPvV~~~~~~~---~-----~~~ 101 (291)
T 3l49_A 35 GGTAIAL--DAGRNDQT-QVSQIQTLIAQKPDAIIEQ-LGNLD-VLNPWLQKINDAGIPLFTVDTATP---H-----AIN 101 (291)
T ss_dssp TCEEEEE--ECTTCHHH-HHHHHHHHHHHCCSEEEEE-SSCHH-HHHHHHHHHHHTTCCEEEESCCCT---T-----CSE
T ss_pred CCEEEEE--cCCCCHHH-HHHHHHHHHHcCCCEEEEe-CCChh-hhHHHHHHHHHCCCcEEEecCCCC---C-----cCc
Confidence 5555444 33444433 3444566767888888851 33321 334455666778999998876432 1 122
Q ss_pred ecCCCchhHHHHHHHHHHh--cCCeEEEEEEecCc--chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCC---CcccHH
Q psy17441 95 RTVPPYSHQADVWVELLKH--FNYMKVIFIHSSDT--DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEP---GLTTFK 167 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~--~~w~~v~ii~~~d~--~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~---~~~d~~ 167 (458)
.+...+...+..+++.+.. .|-++++++..... ......+.+++.+++.+ ++.+........ +.....
T Consensus 102 ~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~ 176 (291)
T 3l49_A 102 NTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFP-----DVKIIEPELRDVIPNTIQSAY 176 (291)
T ss_dssp EEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCT-----TEEECSSCBCCCSSSHHHHHH
T ss_pred eEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCC-----CCEEEeeeccCCCCCCHHHHH
Confidence 3345666667778888877 89999999975432 34567888999998873 132211111111 122334
Q ss_pred HHHHHHHhc-----cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccCCC-CCe----eEEEEecCCCchh
Q psy17441 168 DQLYEMKNA-----QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKNV-PVG----IIGLKLVNATNED 237 (458)
Q Consensus 168 ~~l~~ik~~-----~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~~~-~~g----~~g~~~~~~~~~~ 237 (458)
..++++.+. ++++|+ +.+...+..+++++++.|+. +-..+..|........ ..| ...+.. ...
T Consensus 177 ~~~~~~l~~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~--di~vvg~d~~~~~~~~i~~~~~p~lttv~~----~~~ 249 (291)
T 3l49_A 177 SNVTDMLTKYPNEGDVGAIW-ACWDVPMIGATQALQAAGRT--DIRTYGVDGSPEFVEMVADPESPAGAVAAQ----QPS 249 (291)
T ss_dssp HHHHHHHHHCCSTTSCCEEE-ESSHHHHHHHHHHHHHTTCC--SCEEEEEECCHHHHHHHHCTTSCEEEEEEC----CHH
T ss_pred HHHHHHHHhCCCcCCcCEEE-ECCCchHHHHHHHHHHcCCC--CeEEEEecCCHHHHHHHHCCCCCeEEEEec----CHH
Confidence 455555443 456664 45667788899999999987 3444444443221111 111 222221 234
Q ss_pred HHHHHHHHHHHHHHH
Q psy17441 238 AHIRDSIYVLTSALK 252 (458)
Q Consensus 238 ~~~yDAv~~la~Al~ 252 (458)
..++.|+.++...++
T Consensus 250 ~~g~~av~~l~~~i~ 264 (291)
T 3l49_A 250 EIGKLAVQNVARHLA 264 (291)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 567777776665553
No 92
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=96.93 E-value=0.02 Score=53.40 Aligned_cols=184 Identities=8% Similarity=-0.028 Sum_probs=104.6
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+. +....++.. .....+.+..+++.+||-. +..+. ........+...++|+|...... ... +.+.
T Consensus 34 g~~~~~~-~~~~~~~~~-~~~~~~~l~~~~vdgiii~-~~~~~-~~~~~~~~~~~~~ipvV~~~~~~--~~~----~~~~ 103 (303)
T 3d02_A 34 NLNASQV-GPSSTDAPQ-QVKIIEDLIARKVDAITIV-PNDAN-VLEPVFKKARDAGIVVLTNESPG--QPS----ANWD 103 (303)
T ss_dssp TEEEEEE-CCSSSCHHH-HHHHHHHHHHTTCSEEEEC-CSCHH-HHHHHHHHHHHTTCEEEEESCTT--CTT----CSEE
T ss_pred CCEEEEE-CCCCCCHHH-HHHHHHHHHHcCCCEEEEe-cCChH-HHHHHHHHHHHCCCeEEEEecCC--CCC----CceE
Confidence 5555432 223444433 3444566767889998861 32221 22233455667899999886531 111 2233
Q ss_pred ecCCCchhHHHHHHHHHHh-cCCe-EEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEe-CCCcccHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKH-FNYM-KVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEF-EPGLTTFKDQ 169 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~-~~w~-~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~-~~~~~d~~~~ 169 (458)
.+...+...+..+++.+.. .|.+ +++++.... .......+.+++.+++++.. ..+...... ..+..+....
T Consensus 104 ~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~ 179 (303)
T 3d02_A 104 VEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPD----MHEVTRRMPVAESVDDSRRT 179 (303)
T ss_dssp EESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCTT----EEESSSCBSCTTCHHHHHHH
T ss_pred EEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHHHHHHHHhhCCC----CEEEEeecCCCCCHHHHHHH
Confidence 4556666677778887766 8887 999987542 34556788889988865421 222111101 1123334556
Q ss_pred HHHHHhccC--eEEEEEeChhhHHHHHHHHHhcCCcccceEEEeecc
Q psy17441 170 LYEMKNAQA--RVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQ 214 (458)
Q Consensus 170 l~~ik~~~~--~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~ 214 (458)
++++.+..+ ++|++ .+...+..+++++++.|+. ++-..+..+.
T Consensus 180 ~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~-~dv~vig~d~ 224 (303)
T 3d02_A 180 TLDLMKTYPDLKAVVS-FGSNGPIGAGRAVKEKRAK-NKVAVYGMMI 224 (303)
T ss_dssp HHHHHHHCTTEEEEEE-SSTTHHHHHHHHHHHTTCT-TTCEEEECCC
T ss_pred HHHHHHhCCCCCEEEE-eCCcchhHHHHHHHhcCCC-CCeEEEEeCC
Confidence 666655444 44443 4456788899999999987 3344444443
No 93
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=96.93 E-value=0.013 Score=53.90 Aligned_cols=210 Identities=12% Similarity=0.021 Sum_probs=116.1
Q ss_pred cceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 14 KGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
.|+++.+...++.... ....+.+.+.++.+|| .++.... ..+.. .++|+|..+...+ .+ ...++
T Consensus 34 ~g~~~~~~~~~~~~~~----~~~~~~l~~~~vdgiI-~~~~~~~---~~~~~----~~iPvV~~~~~~~--~~-~~~~~- 97 (280)
T 3gyb_A 34 KGYRLSVIDSLTSQAG----TDPITSALSMRPDGII-IAQDIPD---FTVPD----SLPPFVIAGTRIT--QA-STHDS- 97 (280)
T ss_dssp GTCEEEEECSSSSCSS----SCHHHHHHTTCCSEEE-EESCC---------------CCCEEEESCCCS--SS-CSTTE-
T ss_pred CCCEEEEEeCCCchHH----HHHHHHHHhCCCCEEE-ecCCCCh---hhHhh----cCCCEEEECCCCC--CC-CCCCE-
Confidence 3666666643322211 2223445567888887 3232221 22222 8999998876432 11 11232
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEM 173 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~i 173 (458)
+...+..-+..+++.|...|.++++++...........+.+.+.+++.|+.+ ... ......+..+-...++++
T Consensus 98 --V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~ 170 (280)
T 3gyb_A 98 --VANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEP----LSN-DYLGPAVEHAGYTETLAL 170 (280)
T ss_dssp --EEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCC----EEC-CCCSCCCHHHHHHHHHHH
T ss_pred --EEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCC----Ccc-cccCCCCHHHHHHHHHHH
Confidence 3456666777888888888999999998776556677899999999988443 111 111111233344555555
Q ss_pred Hhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceE-EEeeccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHHH
Q psy17441 174 KNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYV-WIVTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSA 250 (458)
Q Consensus 174 k~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~-wi~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~A 250 (458)
.+. .+++|++ ++...+..+++++++.|+.-++.+ .+..|..........++..+.. .....++.|+.++...
T Consensus 171 l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~~~~~~~p~lttv~~----~~~~~g~~av~~l~~~ 245 (280)
T 3gyb_A 171 LKEHPEVTAIFS-SNDITAIGALGAARELGLRVPEDLSIIGYDNTPLAQTRLINLTTIDD----NSIGVGYNAALLLLSM 245 (280)
T ss_dssp HHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEEEESCCHHHHSTTTCCCEEEC----CHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCeeEEEEECCchHhhccCCCceEEec----CHHHHHHHHHHHHHHH
Confidence 443 3566654 556678889999999999754444 4444432211112222322221 2345677777766555
Q ss_pred H
Q psy17441 251 L 251 (458)
Q Consensus 251 l 251 (458)
+
T Consensus 246 i 246 (280)
T 3gyb_A 246 L 246 (280)
T ss_dssp H
T ss_pred H
Confidence 4
No 94
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=96.91 E-value=0.11 Score=47.63 Aligned_cols=209 Identities=9% Similarity=0.001 Sum_probs=119.6
Q ss_pred cceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 14 KGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
.|+++.+.. ...+.. ......+.+.+.++.+||- .... . ......+...++|+|..+...+ +.. .+
T Consensus 36 ~g~~~~~~~--~~~~~~-~~~~~~~~l~~~~vdgiIi--~~~~--~-~~~~~~l~~~~iPvV~i~~~~~---~~~-~~-- 101 (276)
T 3jy6_A 36 RGYIGVLFD--ANADIE-REKTLLRAIGSRGFDGLIL--QSFS--N-PQTVQEILHQQMPVVSVDREMD---ACP-WP-- 101 (276)
T ss_dssp TTCEEEEEE--CTTCHH-HHHHHHHHHHTTTCSEEEE--ESSC--C-HHHHHHHHTTSSCEEEESCCCT---TCS-SC--
T ss_pred CCCEEEEEe--CCCCHH-HHHHHHHHHHhCCCCEEEE--ecCC--c-HHHHHHHHHCCCCEEEEecccC---CCC-CC--
Confidence 356555443 334442 2344566676889998886 2222 2 4455566778999998865432 111 23
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecCc---chhHHHHHHHHhhhccCCcceeeEEEEEEEEeC--CCcccHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDT---DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE--PGLTTFKD 168 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~---~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~--~~~~d~~~ 168 (458)
.+...+..-+..+++.|...|-++++++..... ......+.+++.+++.+ . ...... .....+..
T Consensus 102 -~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~~------~---~~~~~~~~~~~~~~~~ 171 (276)
T 3jy6_A 102 -QVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGILAAAQDVD------V---LEVSESSYNHSEVHQR 171 (276)
T ss_dssp -EEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHHHTTCSEEE------E---EEECSSSCCHHHHHHH
T ss_pred -EEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHHHHHHHhCC------c---EEEeccccCCcHHHHH
Confidence 234566667778888888899999999987653 23567888889888754 1 111111 11223334
Q ss_pred HHHHHHh-ccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccc-cccCCCCCeeEEEEecCCCchhHHHHHHHHH
Q psy17441 169 QLYEMKN-AQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQA-LTAKNVPVGIIGLKLVNATNEDAHIRDSIYV 246 (458)
Q Consensus 169 ~l~~ik~-~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~-~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~ 246 (458)
..+.+++ ..+++|+ +++...+..+++++++.|+.-++.+-|++-.. ........++..+.. .....++.|+.+
T Consensus 172 ~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~p~lttv~~----~~~~~g~~av~~ 246 (276)
T 3jy6_A 172 LTQLITQNDQKTVAF-ALKERWLLEFFPNLIISGLIDNQTVTATGFADTDFIRRMEPKLTLITQ----NPFLMGASSAEI 246 (276)
T ss_dssp HHHHHHSSSSCEEEE-ESSHHHHHHHSHHHHHSSSCCSSSEEEEEBCCCSTTTCC--CCCEEEC----CHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEE-EeCcHHHHHHHHHHHHcCCCCCCcEEEEEECChHHhhcCCCceEEEEe----CHHHHHHHHHHH
Confidence 4444433 3455555 45667788899999999998655555544322 211111222322221 234566666666
Q ss_pred HHHHH
Q psy17441 247 LTSAL 251 (458)
Q Consensus 247 la~Al 251 (458)
+...+
T Consensus 247 l~~~i 251 (276)
T 3jy6_A 247 MLRQL 251 (276)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65443
No 95
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=96.90 E-value=0.00048 Score=63.57 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=58.7
Q ss_pred cccchhHHHHHHHhhccCCCCCCCCchh-------hHHHHHHHHHHHHHHHhhcccceeEEeeeccCCCCCCChhhh
Q psy17441 336 LNLSSAIWFAWGVLLNSGIGEGTPRSFS-------ARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLTGINDA 405 (458)
Q Consensus 336 ~~~~~~~w~~~~~l~~~g~~~~~p~s~~-------~Ri~~~~w~~~~~i~~~~yta~l~s~lt~~~~~~~i~~~~dL 405 (458)
.++.+++||++.++++.|++|..|.+.. +|+++.+|.++++.+++...+.++..+...++...+..-+|+
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~~~ 276 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDK 276 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC-----
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3688999999999999999999999985 599999999999999999999999988887776666655554
No 96
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=96.82 E-value=0.0082 Score=55.81 Aligned_cols=197 Identities=9% Similarity=-0.033 Sum_probs=109.1
Q ss_pred HHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHHhc
Q psy17441 35 SVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHF 114 (458)
Q Consensus 35 ~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~ 114 (458)
...+.+...++.+||.. +... . ......+...++|+|..+...+. + +..+...+...+..+++.+...
T Consensus 56 ~~~~~l~~~~vdgiI~~-~~~~--~-~~~~~~l~~~~iPvV~~~~~~~~-------~-~~~V~~D~~~~g~~a~~~L~~~ 123 (290)
T 3clk_A 56 HALLTAIERPVMGILLL-SIAL--T-DDNLQLLQSSDVPYCFLSMGFDD-------D-RPFISSDDEDIGYQATNLLINE 123 (290)
T ss_dssp CHHHHHHSSCCSEEEEE-SCC-------CHHHHHCC--CEEEESCC--C-------C-SCEEECCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCEEEEe-cccC--C-HHHHHHHHhCCCCEEEEcCCCCC-------C-CCEEEeChHHHHHHHHHHHHHc
Confidence 34555667889888862 2211 1 12233445689999988653221 1 2334456666777788888878
Q ss_pred CCeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHh-ccCeEEEEEeChhhHH
Q psy17441 115 NYMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKN-AQARVYLMYASKQDAE 191 (458)
Q Consensus 115 ~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~-~~~~viil~~~~~~~~ 191 (458)
|.++++++... ........+.+.+.+++.|+.+.... ...-+.+..+-...++++.+ ..+++|++ .+...+.
T Consensus 124 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~ 198 (290)
T 3clk_A 124 GHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEW----IKPGDYSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAI 198 (290)
T ss_dssp TCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGG----EECCCSSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHH
T ss_pred CCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcce----EEcCCCChhhHHHHHHHHhccCCCcEEEE-CCcHHHH
Confidence 99999999864 23566788999999998885431100 11111122333345555543 45666665 4556788
Q ss_pred HHHHHHHhcCCcccceEE-EeeccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHHHHH
Q psy17441 192 IIFKDAQYLNMTETGYVW-IVTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSALK 252 (458)
Q Consensus 192 ~il~~a~~~g~~~~~~~w-i~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~Al~ 252 (458)
.+++++++.|+.-++.+- +..|...........+..+.. .....++-|+.++...++
T Consensus 199 g~~~al~~~g~~vP~di~vvg~d~~~~~~~~~p~lttv~~----~~~~~g~~av~~l~~~i~ 256 (290)
T 3clk_A 199 GILNQASSFGIEVPKDLSIVSIDGTEMCKITRPQLTSISQ----DFFQMGVTGVQQIHQSVK 256 (290)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEEECCTHHHHSSSCCEEEEC----CHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCceEEEEeCChHHHhhcCCCceEEec----CHHHHHHHHHHHHHHHHh
Confidence 899999999987544443 333332211111112222221 234567777777665553
No 97
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=96.81 E-value=0.00092 Score=69.04 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=49.7
Q ss_pred cccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcccc-eeEEee
Q psy17441 336 LNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTAN-LAAFLV 391 (458)
Q Consensus 336 ~~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yta~-l~s~lt 391 (458)
.++.+++||++.++++.|+++..|.+..||+++.+|.++++.+++..++. ++++++
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 106 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFL 106 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999988887776 555543
No 98
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=96.78 E-value=0.039 Score=51.76 Aligned_cols=161 Identities=12% Similarity=0.114 Sum_probs=95.2
Q ss_pred cccccccceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCC--
Q psy17441 8 DIQYVNKGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFS-- 85 (458)
Q Consensus 8 ~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls-- 85 (458)
+.|.. .|.++.+...+...+... +...++++.++++.+||+ -.+. ++.++. ....++|+|-.+-++|.-.
T Consensus 35 ~~G~~-~g~nv~~~~~~a~gd~~~-~~~~~~~l~~~~~DlIia--i~t~--aa~a~~--~~~~~iPVVf~~v~dp~~~~l 106 (302)
T 3lkv_A 35 AKGYE-EGKNLEFDYKTAQGNPAI-AVQIARQFVGENPDVLVG--IATP--TAQALV--SATKTIPIVFTAVTDPVGAKL 106 (302)
T ss_dssp HTTCC-BTTTEEEEEEECTTCHHH-HHHHHHHHHTTCCSEEEE--ESHH--HHHHHH--HHCSSSCEEEEEESCTTTTTS
T ss_pred hhCcc-cCCcEEEEEEeCCCCHHH-HHHHHHHHHhcCCcEEEE--cCCH--HHHHHH--hhcCCCCeEEEecCCcchhhh
Confidence 34444 566666776667777644 555578888899988887 3221 333333 3446799997777666421
Q ss_pred -CCcc--ccceeecCCCchhHHHHHHHHHHhc--CCeEEEEEEecCcc-hhHHHHHHHHhhhccCCcceeeEEEEEEEEe
Q psy17441 86 -DKNI--HVSFLRTVPPYSHQADVWVELLKHF--NYMKVIFIHSSDTD-GRALLGRFQTTSQNQEDDVEIKVQVEAVIEF 159 (458)
Q Consensus 86 -~~~~--~p~~~r~~p~~~~~~~ai~~ll~~~--~w~~v~ii~~~d~~-g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~ 159 (458)
+... .+.+.-+. +......-+++++.. +-++++++|+..+- .....+.+++.+++.|+ .+.. ..
T Consensus 107 ~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~------~~v~--~~ 176 (302)
T 3lkv_A 107 VKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGI------KLVE--AT 176 (302)
T ss_dssp CSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTC------EEEE--EE
T ss_pred cccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCC------EEEE--Ee
Confidence 1111 12343332 222223345555543 67999999977643 44567888888888873 3222 11
Q ss_pred CCCcccHHHHHHHHHhccCeEEEEEeCh
Q psy17441 160 EPGLTTFKDQLYEMKNAQARVYLMYASK 187 (458)
Q Consensus 160 ~~~~~d~~~~l~~ik~~~~~viil~~~~ 187 (458)
.....+....++.+.. +.+++++..+.
T Consensus 177 ~~~~~~~~~~~~~l~~-~~d~i~~~~d~ 203 (302)
T 3lkv_A 177 ALKSADVQSATQAIAE-KSDVIYALIDN 203 (302)
T ss_dssp CSSGGGHHHHHHHHHT-TCSEEEECSCH
T ss_pred cCChHHHHHHHHhccC-CeeEEEEeCCc
Confidence 2345667777776654 57888776554
No 99
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=96.73 E-value=0.16 Score=47.10 Aligned_cols=214 Identities=8% Similarity=-0.017 Sum_probs=124.1
Q ss_pred cceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 14 KGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
.|+++.+...++ ... .....+.+...+|.+||-. +... . ......+...++|+|..+...+ + ...+
T Consensus 39 ~g~~~~~~~~~~-~~~---~~~~~~~l~~~~vdGiIi~-~~~~--~-~~~~~~l~~~~iPvV~~~~~~~---~-~~~~-- 104 (294)
T 3qk7_A 39 RGLDLLLIPDEP-GEK---YQSLIHLVETRRVDALIVA-HTQP--E-DFRLQYLQKQNFPFLALGRSHL---P-KPYA-- 104 (294)
T ss_dssp TTCEEEEEEECT-TCC---CHHHHHHHHHTCCSEEEEC-SCCS--S-CHHHHHHHHTTCCEEEESCCCC---S-SCCE--
T ss_pred CCCEEEEEeCCC-hhh---HHHHHHHHHcCCCCEEEEe-CCCC--C-hHHHHHHHhCCCCEEEECCCCC---C-CCCC--
Confidence 466666654333 211 1233444556788888862 2222 2 2344556678999998876421 1 1122
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecCc--chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDT--DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLY 171 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~--~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~ 171 (458)
.+...+..-+..+++.|...|.++++++..... ......+.+.+.+++.|+.+.... ......+..+-...++
T Consensus 105 -~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~----~~~~~~~~~~~~~~~~ 179 (294)
T 3qk7_A 105 -WFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGY----LQKADPTRPGGYLAAS 179 (294)
T ss_dssp -EEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTC----EEEECSSHHHHHHHHH
T ss_pred -EEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhH----eecCCCCHHHHHHHHH
Confidence 234566666777788888889999999986643 455778999999999885431111 1111223334445555
Q ss_pred HHHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceE-EEeeccccccCCCCCeeEEEEecCCCch-hHHHHHHHHHH
Q psy17441 172 EMKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYV-WIVTEQALTAKNVPVGIIGLKLVNATNE-DAHIRDSIYVL 247 (458)
Q Consensus 172 ~ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~-wi~t~~~~~~~~~~~g~~g~~~~~~~~~-~~~~yDAv~~l 247 (458)
++.+. .+++|++ ++...+..+++++++.|+.-++.+ .+.-|..........++..+.. .. ...++-|+.++
T Consensus 180 ~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~~~~~~~p~lttv~~----~~~~~~g~~av~~L 254 (294)
T 3qk7_A 180 RLLALEVPPTAIIT-DCNMLGDGVASALDKAGLLGGEGISLIAYDGLPDDSLLDIAVTPIVQ----NTRTSVGKQIASMI 254 (294)
T ss_dssp HHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTCSSTTSCEEEEETCSCTTCSCCSCCEEEEC----CCHHHHHHHHHHHH
T ss_pred HHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEEeecCccHHhhcCCCceeEec----CcHHHHHHHHHHHH
Confidence 55543 4566554 566778889999999999865444 4444433222222334444432 23 35677777776
Q ss_pred HHHH
Q psy17441 248 TSAL 251 (458)
Q Consensus 248 a~Al 251 (458)
...+
T Consensus 255 ~~~i 258 (294)
T 3qk7_A 255 CDLL 258 (294)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6555
No 100
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=96.73 E-value=0.025 Score=51.88 Aligned_cols=214 Identities=11% Similarity=0.012 Sum_probs=118.9
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+.. ...++ +......+.+...+|.++|-. +... . ......+...++|+|......+ + +.+.
T Consensus 33 g~~~~~~~--~~~~~-~~~~~~~~~l~~~~vdgii~~-~~~~--~-~~~~~~l~~~~iPvV~~~~~~~---~----~~~~ 98 (275)
T 3d8u_A 33 GYQLLLGY--SDYSI-EQEEKLLSTFLESRPAGVVLF-GSEH--S-QRTHQLLEASNTPVLEIAELSS---K----ASYL 98 (275)
T ss_dssp SCEECCEE--CTTCH-HHHHHHHHHHHTSCCCCEEEE-SSCC--C-HHHHHHHHHHTCCEEEESSSCS---S----SSSE
T ss_pred CCEEEEEc--CCCCH-HHHHHHHHHHHhcCCCEEEEe-CCCC--C-HHHHHHHHhCCCCEEEEeeccC---C----CCCC
Confidence 55554432 33344 223344566667888888762 2222 2 2333445567999998765322 1 1223
Q ss_pred ecCCCchhHHHHHHHHHHhcCCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKHFNYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYE 172 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ 172 (458)
.+...+...+..+++.+...|.++++++.... .......+.+.+.++++|+.+.. ......+.+..+....+++
T Consensus 99 ~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~----~~~~~~~~~~~~~~~~~~~ 174 (275)
T 3d8u_A 99 NIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDH----FLTTHEAPSSQLGAEGLAK 174 (275)
T ss_dssp EECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCC----EEECSSCCCHHHHHHHHHH
T ss_pred EEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCc----cEEEeCCCChhHHHHHHHH
Confidence 34456666667788888778999999998653 34567788999999998854311 1111111122333445555
Q ss_pred HHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEe-eccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHH
Q psy17441 173 MKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIV-TEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTS 249 (458)
Q Consensus 173 ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~-t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~ 249 (458)
+.+. .+++|++ .+...+..+++++++.|+.-++.+-+. -|...........+..+.. .....++-|+.++..
T Consensus 175 ~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~~~~~~~p~lttv~~----~~~~~g~~a~~~l~~ 249 (275)
T 3d8u_A 175 LLLRDSSLNALVC-SHEEIAIGALFECHRRVLKVPTDIAIICLEGSSMGEHAYPSLTSAEF----DYERMGTKAAEKLLH 249 (275)
T ss_dssp HHTTCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEESSCCHHHHTSSSCCEEEEC----CHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCCCceEEEecCCchHhhhcCCCcceecC----CHHHHHHHHHHHHHH
Confidence 5443 3666664 455678889999999998755444443 3332211111222322321 233456666666654
Q ss_pred HH
Q psy17441 250 AL 251 (458)
Q Consensus 250 Al 251 (458)
.+
T Consensus 250 ~i 251 (275)
T 3d8u_A 250 AI 251 (275)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 101
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=96.71 E-value=0.068 Score=49.86 Aligned_cols=212 Identities=14% Similarity=0.083 Sum_probs=120.6
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchH-HHHHhhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPA-AVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~-~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
|+++.+.. ...+. +......+.+...+|.+||- ..... ... .+..+.+ ++|+|..+...+. ..++
T Consensus 45 g~~~~~~~--~~~~~-~~~~~~~~~l~~~~vdgiI~--~~~~~-~~~~~~~~l~~--~iPvV~i~~~~~~-----~~~~- 110 (303)
T 3kke_A 45 STDVLLGQ--IDAPP-RGTQQLSRLVSEGRVDGVLL--QRRED-FDDDMLAAVLE--GVPAVTINSRVPG-----RVGS- 110 (303)
T ss_dssp TCCEEEEE--CCSTT-HHHHHHHHHHHSCSSSEEEE--CCCTT-CCHHHHHHHHT--TSCEEEESCCCTT-----CCCE-
T ss_pred CCEEEEEe--CCCCh-HHHHHHHHHHHhCCCcEEEE--ecCCC-CcHHHHHHHhC--CCCEEEECCcCCC-----CCCE-
Confidence 55554443 23333 22344456677889999887 32221 223 4444444 9999988764331 2233
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLY 171 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~ 171 (458)
+...+..-+..+++.|...|.++++++.... .......+.+.+.+++.|+.+.... ......+..+-...++
T Consensus 111 --V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~----~~~~~~~~~~~~~~~~ 184 (303)
T 3kke_A 111 --VILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAW----VVDAGWEADAGSAALN 184 (303)
T ss_dssp --EEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGG----EEECCSSHHHHHHHHH
T ss_pred --EEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcce----EEecCCChHHHHHHHH
Confidence 3345556666777888888999999998653 3456778999999999885431100 1111223333445566
Q ss_pred HH-----Hhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceE-EEeeccccccCCCCCeeEEEEecCCCchhHHHHHH
Q psy17441 172 EM-----KNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYV-WIVTEQALTAKNVPVGIIGLKLVNATNEDAHIRDS 243 (458)
Q Consensus 172 ~i-----k~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~-wi~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDA 243 (458)
++ .+. .+++|++ ++...+..+++++++.|+.-++.+ .+.-|...........+..+.. .....++-|
T Consensus 185 ~l~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~~~~~~~p~lttv~~----~~~~~g~~a 259 (303)
T 3kke_A 185 TLYRGANLGKPDGPTAVVV-ASVNAAVGALSTALRLGLRVPEDLSIVGINTTWVSDTVYPALTTVRL----PLQRLGEVA 259 (303)
T ss_dssp HHHHHHCTTSTTSCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEESCCHHHHHSSSCCEEEEC----CHHHHHHHH
T ss_pred HhcchhhhcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEEEEcChhHhhcCCCCeeEEec----CHHHHHHHH
Confidence 66 433 3566554 556678889999999999755444 4444332211111222333332 234566677
Q ss_pred HHHHHHHH
Q psy17441 244 IYVLTSAL 251 (458)
Q Consensus 244 v~~la~Al 251 (458)
+.++...+
T Consensus 260 v~~L~~~i 267 (303)
T 3kke_A 260 ADVLMEHL 267 (303)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 76665544
No 102
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=96.68 E-value=0.14 Score=48.56 Aligned_cols=214 Identities=8% Similarity=-0.015 Sum_probs=120.2
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+ ++.+.++. ......+.+...+|.+||-. +... . ......+...++|+|..+...+ . +..
T Consensus 92 g~~~~~--~~~~~~~~-~~~~~~~~l~~~~vdGiIi~-~~~~--~-~~~~~~l~~~~iPvV~~~~~~~----~---~~~- 156 (339)
T 3h5o_A 92 GYQMLI--GNSHYDAG-QELQLLRAYLQHRPDGVLIT-GLSH--A-EPFERILSQHALPVVYMMDLAD----D---GRC- 156 (339)
T ss_dssp TCEEEE--EECTTCHH-HHHHHHHHHHTTCCSEEEEE-CSCC--C-TTHHHHHHHTTCCEEEEESCCS----S---SCC-
T ss_pred CCEEEE--EeCCCChH-HHHHHHHHHHcCCCCEEEEe-CCCC--C-HHHHHHHhcCCCCEEEEeecCC----C---CCe-
Confidence 444433 33344442 23344566667888888752 2222 1 2344556678999998754211 1 111
Q ss_pred ecCCCchhHHHHHHHHHHhcCCeEEEEEEecC-cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKHFNYMKVIFIHSSD-TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEM 173 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d-~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~i 173 (458)
.+...+..-+..+++.|...|.++++++.... .......+.+.+.+++.|+... ... .......+..+-...++++
T Consensus 157 ~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~-~~~--~~~~~~~~~~~~~~~~~~l 233 (339)
T 3h5o_A 157 CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRAALDAADCRDA-GLE--WLDPQPSSMQMGADMLDRA 233 (339)
T ss_dssp EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCG-GGE--EEECSCCCHHHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCC-Chh--eEecCCCCHHHHHHHHHHH
Confidence 34456666677778888888999999998664 3455678889999999885210 011 1111111223334455555
Q ss_pred Hhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEee-ccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHHH
Q psy17441 174 KNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVT-EQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSA 250 (458)
Q Consensus 174 k~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t-~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~A 250 (458)
.+. .+++|++ ++...+..+++++++.|+.-++.+-|++ |...........+..+.. .....++-|+.++...
T Consensus 234 l~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~disvvgfD~~~~~~~~~p~lttv~~----~~~~~g~~Av~~L~~~ 308 (339)
T 3h5o_A 234 LAERPDCDALFC-CNDDLAIGALARSQQLGIAVPERLAIAGFNDLQPAAWCTPPLTTVAT----PRRDIGVHAAKALLQL 308 (339)
T ss_dssp HHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEECSBCCGGGTTSSSCCBEEEC----CHHHHHHHHHHHHHHH
T ss_pred HcCCCCCcEEEE-CChHHHHHHHHHHHHcCCCCCCCEEEEEECCHHHHhccCCCceEEEe----CHHHHHHHHHHHHHHH
Confidence 433 4666664 5667788899999999997655554443 322222222223333332 2345566666666544
Q ss_pred H
Q psy17441 251 L 251 (458)
Q Consensus 251 l 251 (458)
+
T Consensus 309 i 309 (339)
T 3h5o_A 309 I 309 (339)
T ss_dssp H
T ss_pred h
Confidence 4
No 103
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=96.68 E-value=0.064 Score=49.88 Aligned_cols=223 Identities=10% Similarity=0.012 Sum_probs=117.3
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+. +. .++ +......+.++.+++.+||-. |..+. ........+...++|+|......+...... .+.+.
T Consensus 32 g~~~~~~--~~-~~~-~~~~~~i~~l~~~~vdgiii~-~~~~~-~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~-~~~~~ 104 (306)
T 8abp_A 32 GFEVIKI--AV-PDG-EKTLNAIDSLAASGAKGFVIC-TPDPK-LGSAIVAKARGYDMKVIAVDDQFVNAKGKP-MDTVP 104 (306)
T ss_dssp TEEEEEE--EC-CSH-HHHHHHHHHHHHTTCCEEEEE-CSCGG-GHHHHHHHHHHTTCEEEEESSCCBCTTSCB-CTTSC
T ss_pred CCEEEEe--CC-CCH-HHHHHHHHHHHHcCCCEEEEe-CCCch-hhHHHHHHHHHCCCcEEEeCCCCCCccccc-ccccc
Confidence 5555433 23 344 333445666778889988862 33222 333444556778999999875322211110 01122
Q ss_pred ecCCCchhHHHHHHHHHH-hcCCe-----EEEEEE-ecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCccc
Q psy17441 95 RTVPPYSHQADVWVELLK-HFNYM-----KVIFIH-SSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTT 165 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~-~~~w~-----~v~ii~-~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d 165 (458)
.+...+..-+...++.+. ..+-+ +++++. ... .......+.+.+.++++|+.- ..+........+.++
T Consensus 105 ~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~---~~~~~~~~~~~~~~~ 181 (306)
T 8abp_A 105 LVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE---KQIYQVPTKSNDIPG 181 (306)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHHHHHHHHHHHHHHTCCG---GGEEEEECSSSSHHH
T ss_pred EEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHHHHHHHHHHHHhcCCCC---cEEEeeccCCCChHH
Confidence 233455555555555443 33433 899886 332 345577888999999876321 112211111223344
Q ss_pred HHHHHHHHHhcc--CeE-EEEEeChhhHHHHHHHHHhcCCcccceEE-EeeccccccCCCCCe----eEEEEecCCCchh
Q psy17441 166 FKDQLYEMKNAQ--ARV-YLMYASKQDAEIIFKDAQYLNMTETGYVW-IVTEQALTAKNVPVG----IIGLKLVNATNED 237 (458)
Q Consensus 166 ~~~~l~~ik~~~--~~v-iil~~~~~~~~~il~~a~~~g~~~~~~~w-i~t~~~~~~~~~~~g----~~g~~~~~~~~~~ 237 (458)
-...++++.+.. ++. ++++++...+..+++++++.|+.. +.+- +..|.......+..| .+..... ...
T Consensus 182 ~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v-~di~vvG~D~~~~~~~~~~~~~~~~~ttv~~---~~~ 257 (306)
T 8abp_A 182 AFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA-ADIIGIGINGVDAVSELSKAQATGFYGSLLP---SPD 257 (306)
T ss_dssp HHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCG-GGEEEEEESSGGGHHHHTSSSCCSEEEEEEC---CHH
T ss_pred HHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCC-CceEEEEeCcHHHHHHHHcCCCcceEEEecC---CHH
Confidence 455566665544 455 355556677889999999999874 3444 444433311112233 3332221 234
Q ss_pred HHHHHHHHHHHHHH
Q psy17441 238 AHIRDSIYVLTSAL 251 (458)
Q Consensus 238 ~~~yDAv~~la~Al 251 (458)
..++.|+.++...+
T Consensus 258 ~~G~~a~~~l~~~i 271 (306)
T 8abp_A 258 VHGYKSSEMLYNWV 271 (306)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56677777665555
No 104
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=96.66 E-value=0.12 Score=47.27 Aligned_cols=206 Identities=10% Similarity=0.011 Sum_probs=110.7
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHH-hhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSY-TSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~-i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
|+++.+. +...+. .......+.+...++.+||- ... ... ... .+...++|+|..+...+.. .
T Consensus 38 g~~~~~~--~~~~~~-~~~~~~~~~l~~~~~dgiIi--~~~---~~~-~~~~~l~~~~iPvV~~~~~~~~~------~-- 100 (277)
T 3e61_A 38 GYQVLIG--NSDNDI-KKAQGYLATFVSHNCTGMIS--TAF---NEN-IIENTLTDHHIPFVFIDRINNEH------N-- 100 (277)
T ss_dssp TCCEEEE--ECTTCH-HHHHHHHHHHHHTTCSEEEE--CGG---GHH-HHHHHHHHC-CCEEEGGGCC------------
T ss_pred CCEEEEE--eCCCCH-HHHHHHHHHHHhCCCCEEEE--ecC---ChH-HHHHHHHcCCCCEEEEeccCCCC------C--
Confidence 5555443 233344 33344566676789999997 221 222 334 5667799999887643211 1
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLY 171 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~ 171 (458)
.+...+..-+..+++.|...|.++++++.... .......+.+.+.+++.|+.+ .. . .. ...+.....+
T Consensus 101 -~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~------~~-~-~~-~~~~~~~~~~ 170 (277)
T 3e61_A 101 -GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDY------KM-L-EA-TLLDNDKKFI 170 (277)
T ss_dssp ------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CE------EE-E-EG-GGGGSHHHHH
T ss_pred -eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCc------cc-e-ec-CCCCHHHHHH
Confidence 33456666677788888888999999998553 345677899999999887332 21 1 11 1112222222
Q ss_pred HHHh-ccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEee-ccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHH
Q psy17441 172 EMKN-AQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVT-EQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTS 249 (458)
Q Consensus 172 ~ik~-~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t-~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~ 249 (458)
.+.+ ..+++|++ .+...+..+++++++.|+.-++.+-|++ |..........++..+.. .....++.|+.++..
T Consensus 171 ~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~p~lttv~~----~~~~~g~~av~~l~~ 245 (277)
T 3e61_A 171 DLIKELSIDSIIC-SNDLLAINVLGIVQRYHFKVPAEIQIIGYDNIPFSEMTYPQITTIDQ----SAYHLGEIAVSQLLG 245 (277)
T ss_dssp HHHHHHTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEECSBCCGGGGTSSSCCBEEEC----CHHHHHHHHHHHHC-
T ss_pred HhhcCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEEeeCCchHHhhCCCCceEEeC----CHHHHHHHHHHHHHH
Confidence 2433 45676665 4566788899999999997554554443 322211112222322321 234566777776655
Q ss_pred HHH
Q psy17441 250 ALK 252 (458)
Q Consensus 250 Al~ 252 (458)
.++
T Consensus 246 ~i~ 248 (277)
T 3e61_A 246 LNT 248 (277)
T ss_dssp ---
T ss_pred Hhc
Confidence 554
No 105
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=96.64 E-value=0.056 Score=51.33 Aligned_cols=187 Identities=6% Similarity=-0.085 Sum_probs=103.6
Q ss_pred ceEEEEeeeeeC--CCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccc
Q psy17441 15 GVTFSATGIQMD--PNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVS 92 (458)
Q Consensus 15 ~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~ 92 (458)
|+++.+..++.+ .++ .......+.+.+.++.+||- +.... ........+...++|.|..........+....+.
T Consensus 74 g~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~vdgiIi--~~~~~-~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~ 149 (342)
T 1jx6_A 74 NINYQLNQVFTRPNADI-KQQSLSLMEALKSKSDYLIF--TLDTT-RHRKFVEHVLDSTNTKLILQNITTPVREWDKHQP 149 (342)
T ss_dssp TCCEEEEEEECCTTCCH-HHHHHHHHHHHHTTCSEEEE--CCSSS-TTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCC
T ss_pred CCeEEEEecCCCCccCH-HHHHHHHHHHHhcCCCEEEE--eCChH-hHHHHHHHHHHcCCCEEEEecCCCcccccccCCC
Confidence 555555544443 344 33334456676788999987 44332 2223334455679999877332211100000122
Q ss_pred eeecCCCchhHHHHHHHHHHh-cC-CeEEEEEEecCc-chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHH
Q psy17441 93 FLRTVPPYSHQADVWVELLKH-FN-YMKVIFIHSSDT-DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQ 169 (458)
Q Consensus 93 ~~r~~p~~~~~~~ai~~ll~~-~~-w~~v~ii~~~d~-~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~ 169 (458)
+..+...+..-+..+++.+.. .| .+++++|..... ......+.+.+.+++.|+ + .......-..+..+-...
T Consensus 150 ~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~-~----~~~~~~~~~~~~~~~~~~ 224 (342)
T 1jx6_A 150 FLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNN-F----ELQSAYYTKATKQSGYDA 224 (342)
T ss_dssp SEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHC-C----EEEEEECCCSSHHHHHHH
T ss_pred ceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhHHHHHHHHHHHhCCC-c----EEEEEecCCCCHHHHHHH
Confidence 233445666667777787766 47 999999975543 345677889999998773 1 111111111122333445
Q ss_pred HHHHHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeec
Q psy17441 170 LYEMKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTE 213 (458)
Q Consensus 170 l~~ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~ 213 (458)
++++.+. .+++|++ .+...+..+++++++.|+ ++-..+.-|
T Consensus 225 ~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~g~--~di~vvg~D 267 (342)
T 1jx6_A 225 AKASLAKHPDVDFIYA-CSTDVALGAVDALAELGR--EDIMINGWG 267 (342)
T ss_dssp HHHHHHHCCCCSEEEE-SSHHHHHHHHHHHHHHTC--TTSEEBCSB
T ss_pred HHHHHHhCCCccEEEE-CCChhHHHHHHHHHHcCC--CCcEEEEeC
Confidence 5555443 3566654 455678889999999998 334444333
No 106
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=96.63 E-value=0.11 Score=48.29 Aligned_cols=195 Identities=9% Similarity=0.056 Sum_probs=113.0
Q ss_pred HHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHH
Q psy17441 33 ALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLK 112 (458)
Q Consensus 33 ~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~ 112 (458)
.....+.+...++.+||-. +... . ......+...++|+|..+... +.. .+..+...+..-+..+++.|.
T Consensus 72 ~~~~~~~l~~~~vdgiIi~-~~~~--~-~~~~~~l~~~~iPvV~i~~~~----~~~---~~~~V~~D~~~~g~~a~~~L~ 140 (305)
T 3huu_A 72 YHEVKTMIQSKSVDGFILL-YSLK--D-DPIEHLLNEFKVPYLIVGKSL----NYE---NIIHIDNDNIDAAYQLTQYLY 140 (305)
T ss_dssp HHHHHHHHHTTCCSEEEES-SCBT--T-CHHHHHHHHTTCCEEEESCCC----SST---TCCEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEe-CCcC--C-cHHHHHHHHcCCCEEEECCCC----ccc---CCcEEEeCHHHHHHHHHHHHH
Confidence 3444566667889998862 2222 1 234455667899999876632 111 122334566666777788888
Q ss_pred hcCCeEEEEEEecCc--chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHH-Hh--ccCeEEEEEeCh
Q psy17441 113 HFNYMKVIFIHSSDT--DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEM-KN--AQARVYLMYASK 187 (458)
Q Consensus 113 ~~~w~~v~ii~~~d~--~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~i-k~--~~~~viil~~~~ 187 (458)
..|-++++++..... ......+.+.+.+++.|+.+.. .. ...... -...++++ .+ ..+++|++ ++.
T Consensus 141 ~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~------~~-~~~~~~-~~~~~~~~~l~~~~~~~ai~~-~nd 211 (305)
T 3huu_A 141 HLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC------VV-IKSMND-LRDFIKQYCIDASHMPSVIIT-SDV 211 (305)
T ss_dssp HTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE------EE-ECSHHH-HHHHC--------CCCSEEEE-SSH
T ss_pred HCCCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc------EE-ecCcHH-HHHHHHHhhhcCCCCCCEEEE-CCh
Confidence 889999999986543 3556789999999998855411 11 111111 33444444 32 35666654 566
Q ss_pred hhHHHHHHHHHhcCCcccceE-EEeeccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHHHH
Q psy17441 188 QDAEIIFKDAQYLNMTETGYV-WIVTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSAL 251 (458)
Q Consensus 188 ~~~~~il~~a~~~g~~~~~~~-wi~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~Al 251 (458)
..+..+++++++.|+.-++.+ .+.-|...........+..+.. .....++.|+.++...+
T Consensus 212 ~~A~g~~~al~~~g~~vP~di~vig~D~~~~~~~~~p~lttv~~----~~~~~g~~av~~l~~~i 272 (305)
T 3huu_A 212 MLNMQLLNVLYEYQLRIPEDIQTATFNTSFLTENATPSQTSVNI----NPDVLGFTAGNTIIDVL 272 (305)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEESCSHHHHTSSSCCEEEEC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcceEEEEECCcchhhhcCCcceEEec----CHHHHHHHHHHHHHHHh
Confidence 778889999999999755444 4444433222122223333332 23456777777765554
No 107
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=96.53 E-value=0.02 Score=53.07 Aligned_cols=215 Identities=12% Similarity=-0.010 Sum_probs=118.6
Q ss_pred cceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccce
Q psy17441 14 KGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 93 (458)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~ 93 (458)
.|+++.+...+++.+. .....+.+.+.++.+||-. +... . ......+...++|+|..+...+. . ..++
T Consensus 39 ~g~~~~~~~~~~~~~~---~~~~~~~l~~~~vdgiIi~-~~~~--~-~~~~~~l~~~~iPvV~i~~~~~~---~-~~~~- 106 (288)
T 3gv0_A 39 TQYHLVVTPHIHAKDS---MVPIRYILETGSADGVIIS-KIEP--N-DPRVRFMTERNMPFVTHGRSDMG---I-EHAF- 106 (288)
T ss_dssp SSCEEEECCBSSGGGT---THHHHHHHHHTCCSEEEEE-SCCT--T-CHHHHHHHHTTCCEEEESCCCSS---C-CCEE-
T ss_pred cCCEEEEecCCcchhH---HHHHHHHHHcCCccEEEEe-cCCC--C-cHHHHHHhhCCCCEEEECCcCCC---C-CCcE-
Confidence 4666655533322222 1222333446788887752 2222 1 23445566789999987654321 1 1222
Q ss_pred eecCCCchhHHHHHHHHHHhcCCeEEEEEEecCc--chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHH
Q psy17441 94 LRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDT--DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLY 171 (458)
Q Consensus 94 ~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~--~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~ 171 (458)
+...+..-+..+++.|...|-++++++..... ......+.+.+.+++.|+.+ ..........+..+....++
T Consensus 107 --V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~----~~~~~~~~~~~~~~~~~~~~ 180 (288)
T 3gv0_A 107 --HDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTE----FPIDAVTIETPLEKIRDFGQ 180 (288)
T ss_dssp --EEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEE----CCCCSCCTTSCHHHHHHHHH
T ss_pred --EEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCc----chhheeccccchHHHHHHHH
Confidence 34566666778888888889999999976543 45677899999999988322 10000111112333445566
Q ss_pred HHHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEee-ccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHH
Q psy17441 172 EMKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVT-EQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLT 248 (458)
Q Consensus 172 ~ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t-~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la 248 (458)
++.+. .+++|+ +++...+..+++++++.|+.-++.+-|++ |..........++..+.. .....++.|+.++.
T Consensus 181 ~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~p~lttv~~----~~~~~g~~a~~~l~ 255 (288)
T 3gv0_A 181 RLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGEDVDIVSKQSAEFLNWIKPQIHTVNE----DIKLAGRELAKALL 255 (288)
T ss_dssp HHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTTSCEEEEEESSTTHHHHCTTSEEEEC----CHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCCceEEEEecChHHHhccCCCceEEec----CHHHHHHHHHHHHH
Confidence 66543 356665 45566788899999999997554444433 322111111122223321 23455666666665
Q ss_pred HHH
Q psy17441 249 SAL 251 (458)
Q Consensus 249 ~Al 251 (458)
..+
T Consensus 256 ~~i 258 (288)
T 3gv0_A 256 ARI 258 (288)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 108
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=96.48 E-value=0.13 Score=47.98 Aligned_cols=184 Identities=9% Similarity=-0.023 Sum_probs=106.2
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+.. ...++.. .....+.+..+++.+||-. +.... ........+...+||+|......+. . ... .
T Consensus 32 g~~~~~~~--~~~~~~~-~~~~i~~l~~~~vdgiIi~-~~~~~-~~~~~~~~~~~~~iPvV~~~~~~~~---~-~~~--~ 100 (313)
T 3m9w_A 32 GAKVFVQS--ANGNEET-QMSQIENMINRGVDVLVII-PYNGQ-VLSNVVKEAKQEGIKVLAYDRMIND---A-DID--F 100 (313)
T ss_dssp SCEEEEEE--CTTCHHH-HHHHHHHHHHTTCSEEEEE-CSSTT-SCHHHHHHHHTTTCEEEEESSCCTT---S-CCS--E
T ss_pred CCEEEEEC--CCCCHHH-HHHHHHHHHHcCCCEEEEe-CCChh-hhHHHHHHHHHCCCeEEEECCcCCC---C-Cce--E
Confidence 55555443 3444433 3444666777889888862 33222 2234556667889999998764332 1 111 2
Q ss_pred ecCCCchhHHHHHHHHHH-hcCCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEe-CCCcccHHHHH
Q psy17441 95 RTVPPYSHQADVWVELLK-HFNYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEF-EPGLTTFKDQL 170 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~-~~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~-~~~~~d~~~~l 170 (458)
.+...+...+..+++.|. ..|-++++++.... .......+.+++.+++.|.. .++.+...... ..+..+-...+
T Consensus 101 ~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 178 (313)
T 3m9w_A 101 YISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDS--GKIKVVGDQWVDGWLPENALKIM 178 (313)
T ss_dssp EEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHHHHHHHHHHT--TSEEEEEEEECGGGCHHHHHHHH
T ss_pred EEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHHHHHHhhccC--CCEEEEeeccCCCcCHHHHHHHH
Confidence 234466666777788776 89999999997543 23556678888888876200 01333222211 11233334455
Q ss_pred HHHHh---ccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeec
Q psy17441 171 YEMKN---AQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTE 213 (458)
Q Consensus 171 ~~ik~---~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~ 213 (458)
+++-+ ..+++|++ ++...+..+++++++.|+. ++...+..|
T Consensus 179 ~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~-~di~vig~d 222 (313)
T 3m9w_A 179 ENALTANNNKIDAVVA-SNDATAGGAIQALSAQGLS-GKVAISGQD 222 (313)
T ss_dssp HHHHHHTTTCCCEEEE-SSHHHHHHHHHHHHTTTCT-TTSEECCCS
T ss_pred HHHHHhCCCCeeEEEE-CCCchHHHHHHHHHHcCCC-CCcEEEecC
Confidence 55443 24555554 4556788899999999987 334444444
No 109
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=96.46 E-value=0.12 Score=49.08 Aligned_cols=215 Identities=13% Similarity=0.051 Sum_probs=120.7
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+. ..+.++.. .....+.+...++.+||-. +... . ......+...++|+|..+.... . +...
T Consensus 98 g~~~~~~--~~~~~~~~-~~~~i~~l~~~~vdGiIi~-~~~~--~-~~~~~~l~~~~iPvV~i~~~~~----~---~~~~ 163 (344)
T 3kjx_A 98 ELQPVVG--VTDYLPEK-EEKVLYEMLSWRPSGVIIA-GLEH--S-EAARAMLDAAGIPVVEIMDSDG----K---PVDA 163 (344)
T ss_dssp SSEEEEE--ECTTCHHH-HHHHHHHHHTTCCSEEEEE-CSCC--C-HHHHHHHHHCSSCEEEEEECSS----C---CSSE
T ss_pred CCEEEEE--eCCCCHHH-HHHHHHHHHhCCCCEEEEE-CCCC--C-HHHHHHHHhCCCCEEEEeCCCC----C---CCCC
Confidence 5554333 33344432 3344566667888888862 2222 2 3445556678999998853211 1 1112
Q ss_pred ecCCCchhHHHHHHHHHHhcCCeEEEEEEecC---cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKHFNYMKVIFIHSSD---TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLY 171 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d---~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~ 171 (458)
.+...+..-+..+++.|...|.++++++.... .......+.+.+.+++.|+.+.. .....-+.+..+-...++
T Consensus 164 ~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~----~~~~~~~~~~~~~~~~~~ 239 (344)
T 3kjx_A 164 MVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIED----REFYSGGSALAKGREMTQ 239 (344)
T ss_dssp EEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSC----EEECSSCCCHHHHHHHHH
T ss_pred EEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCCh----heEEeCCCCHHHHHHHHH
Confidence 33456666677778888888999999998653 34557788999999998854311 111111112222334444
Q ss_pred HHHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEee-ccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHH
Q psy17441 172 EMKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVT-EQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLT 248 (458)
Q Consensus 172 ~ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t-~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la 248 (458)
++.+. .++.|+ +++...+..+++++++.|+.-++.+-|++ |...........+..+.. .....++-|+.++.
T Consensus 240 ~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disvvg~D~~~~~~~~~p~lttv~~----~~~~~g~~av~~l~ 314 (344)
T 3kjx_A 240 AMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGLAGFNNVELLQGLPRKLATMDA----CRLEIGRKAAEIIA 314 (344)
T ss_dssp HHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEECSBCCGGGGGSSSCCBEEBC----CHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEEECChHHHhccCCCccEEeC----CHHHHHHHHHHHHH
Confidence 54332 466665 45667788899999999997655554443 322111112222333321 23456677777665
Q ss_pred HHHH
Q psy17441 249 SALK 252 (458)
Q Consensus 249 ~Al~ 252 (458)
..++
T Consensus 315 ~~i~ 318 (344)
T 3kjx_A 315 KRLE 318 (344)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
No 110
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=96.43 E-value=0.00012 Score=70.53 Aligned_cols=59 Identities=12% Similarity=0.224 Sum_probs=51.3
Q ss_pred ccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcccceeEEeeeccC
Q psy17441 337 NLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERP 395 (458)
Q Consensus 337 ~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yta~l~s~lt~~~~ 395 (458)
++.+++||++.++++.|+++..|.+..||+++++|.++++++++..++.+++.++..+.
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQ 103 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-----
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999998888776543
No 111
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=96.42 E-value=0.22 Score=47.48 Aligned_cols=196 Identities=14% Similarity=0.083 Sum_probs=107.1
Q ss_pred HHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHHh
Q psy17441 34 LSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKH 113 (458)
Q Consensus 34 ~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~ 113 (458)
....+.+..+++.+||-.++.. ........+...++|+|...... + ...++ +...+..-+...++.|..
T Consensus 108 ~~~l~~l~~~~vdGiIi~~~~~---~~~~~~~~~~~~~iPvV~i~~~~----~-~~~~~---V~~d~~~~~~~a~~~L~~ 176 (349)
T 1jye_A 108 KTAVHNLLAQRVSGLIINYPLD---DQDAIAVEAACTNVPALFLDVSD----Q-TPINS---IIFSHEDGTRLGVEHLVA 176 (349)
T ss_dssp HHHHHHHHTTTCSCEEEESCCC---HHHHHHHHHHTTTSCEEESSSCT----T-SSSCE---EEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEecCCC---ChhHHHHHHhhCCCCEEEEcccC----C-CCCCE---EEEchHHHHHHHHHHHHH
Confidence 3345556677888877522322 21222333445789999875421 1 11232 234444555666777777
Q ss_pred cCCeEEEEEEecCc--chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhc--cCeEEEEEeChhh
Q psy17441 114 FNYMKVIFIHSSDT--DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNA--QARVYLMYASKQD 189 (458)
Q Consensus 114 ~~w~~v~ii~~~d~--~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~--~~~viil~~~~~~ 189 (458)
.|.+++++|..... ......+.+.+.+++.|+.+. ....-+.+..+-...+.++.+. .+++|++ ++...
T Consensus 177 ~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~------~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~ 249 (349)
T 1jye_A 177 LGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPI------AEREGDWSAMSGFQQTMQMLNEGIVPTAMLV-ANDQM 249 (349)
T ss_dssp HTCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCS------EEEECCSSHHHHHHHHHHHHHTTCCCSEEEE-SSHHH
T ss_pred CCCCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCcc------ccccCCCChHHHHHHHHHHHhCCCCCCEEEE-CChHH
Confidence 89999999986532 345678889999999885321 1111111222223344444333 4566654 45567
Q ss_pred HHHHHHHHHhcCCcccceEEEe-eccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHHHH
Q psy17441 190 AEIIFKDAQYLNMTETGYVWIV-TEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSAL 251 (458)
Q Consensus 190 ~~~il~~a~~~g~~~~~~~wi~-t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~Al 251 (458)
+..+++++++.|+.-++.+-|+ -|...........+..+.. .....++-|+.++...+
T Consensus 250 A~g~~~al~~~G~~vP~disvvGfD~~~~~~~~~p~lttv~q----~~~~~g~~Av~~L~~~i 308 (349)
T 1jye_A 250 ALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQ----DFRLLGQTSVDRLLQLS 308 (349)
T ss_dssp HHHHHHHHHHTTCCBTTTBEEECSBCCGGGGGSSSCCBEEEC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcEEEEEECCcHHHHhcCCceeEEeC----CHHHHHHHHHHHHHHHh
Confidence 8889999999999755444444 3332222222223333321 23455666666665443
No 112
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=96.39 E-value=0.063 Score=51.32 Aligned_cols=196 Identities=14% Similarity=0.078 Sum_probs=107.0
Q ss_pred HHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHHh
Q psy17441 34 LSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKH 113 (458)
Q Consensus 34 ~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~ 113 (458)
....+.+...++.+||- ..... . ......+...++|+|......+. ....++ +...+..-+..+++.|..
T Consensus 112 ~~~~~~l~~~~vdgiI~--~~~~~-~-~~~~~~l~~~~iPvV~i~~~~~~---~~~~~~---V~~D~~~~~~~a~~~L~~ 181 (348)
T 3bil_A 112 SGSLEFLTSHGVDGIIC--VPNEE-C-ANQLEDLQKQGMPVVLVDRELPG---DSTIPT---ATSNPQPGIAAAVELLAH 181 (348)
T ss_dssp HHHHHHHHHTTCSCEEE--CCCGG-G-HHHHHHHHHC-CCEEEESSCCSC---C-CCCE---EEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEE--eCCCC-C-hHHHHHHHhCCCCEEEEcccCCC---CCCCCE---EEeChHHHHHHHHHHHHH
Confidence 34455666788988886 32221 2 23334455679999988653221 011222 233444456677788877
Q ss_pred cCCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhcc-CeEEEEEeChhhH
Q psy17441 114 FNYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQ-ARVYLMYASKQDA 190 (458)
Q Consensus 114 ~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~-~~viil~~~~~~~ 190 (458)
.|.+++++|.... .......+.+.+.+++.|+.. . ....-+.+..+-...++++.+.. + .|++++...+
T Consensus 182 ~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~----~--~v~~~~~~~~~~~~~~~~ll~~~~~--ai~~~nD~~A 253 (348)
T 3bil_A 182 NNALPIGYLSGPMDTSTGRERLEDFKAACANSKIGE----Q--LVFLGGYEQSVGFEGATKLLDQGAK--TLFAGDSMMT 253 (348)
T ss_dssp TTCCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCC----C--EEECCCSSHHHHHHHHHHHHHTTCS--EEEESSHHHH
T ss_pred CCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcCc----c--EEEcCCCCHHHHHHHHHHHHcCCCC--EEEEcChHHH
Confidence 8999999998653 245677889999999888421 1 11111112233344555554433 4 3445566778
Q ss_pred HHHHHHHHhcCCcccceEEEe-eccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHHHH
Q psy17441 191 EIIFKDAQYLNMTETGYVWIV-TEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSAL 251 (458)
Q Consensus 191 ~~il~~a~~~g~~~~~~~wi~-t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~Al 251 (458)
..+++++++.|+.-++.+-++ -|...........+..+.. .....++-|+.++...+
T Consensus 254 ~g~~~al~~~G~~vP~disvvG~D~~~~~~~~~p~lttv~~----~~~~~g~~Av~~l~~~i 311 (348)
T 3bil_A 254 IGVIEACHKAGLVIGKDVSVIGFDTHPLFALQPHPLTVIDQ----NVEQLAQRAVSILTELI 311 (348)
T ss_dssp HHHHHHHHHTTCCBTTTBEEEEESCCGGGGGSSSCCCEEEC----CHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCCCCeEEEEeCCcHHHHhcCCCceEEEc----CHHHHHHHHHHHHHHHh
Confidence 899999999999755444443 3332222111112222221 23345666666655444
No 113
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=96.39 E-value=0.049 Score=50.40 Aligned_cols=218 Identities=13% Similarity=0.090 Sum_probs=121.1
Q ss_pred cceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCC--CchHHHHHhhcccCCcEEeeecCCCCCCCCcccc
Q psy17441 14 KGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGD--LSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHV 91 (458)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~--~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p 91 (458)
.|+++.+.. ...++ +......+.+.++++.+||-. +..+. .........+...++|+|......+.. ..+
T Consensus 44 ~g~~~~~~~--~~~~~-~~~~~~~~~l~~~~vdgiIi~-~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~----~~~ 115 (298)
T 3tb6_A 44 QGYSMLLTS--TNNNP-DNERRGLENLLSQHIDGLIVE-PTKSALQTPNIGYYLNLEKNGIPFAMINASYAEL----AAP 115 (298)
T ss_dssp TTCEEEEEE--CTTCH-HHHHHHHHHHHHTCCSEEEEC-CSSTTSCCTTHHHHHHHHHTTCCEEEESSCCTTC----SSC
T ss_pred CCCEEEEEe--CCCCh-HHHHHHHHHHHHCCCCEEEEe-cccccccCCcHHHHHHHHhcCCCEEEEecCcCCC----CCC
Confidence 356555443 33344 333445666778899888862 22210 022344455667899999887643211 122
Q ss_pred ceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCc-chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCC-Cccc-HHH
Q psy17441 92 SFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDT-DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEP-GLTT-FKD 168 (458)
Q Consensus 92 ~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~-~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~-~~~d-~~~ 168 (458)
+ +...+..-+..+++.|...|.++++++..... ......+.+.+.+++.|+.+..... ..... .... ...
T Consensus 116 ~---V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~----~~~~~~~~~~~~~~ 188 (298)
T 3tb6_A 116 S---FTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFPSPDMI----VTFTTEEKESKLLE 188 (298)
T ss_dssp E---EEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCCCGGGE----EEECHHHHTTHHHH
T ss_pred E---EEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCCCcceE----EEecccchhhhHHH
Confidence 2 34566666778888888889999999986543 4556788899999998854311111 11111 1111 234
Q ss_pred HHHHHHhcc----CeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeecc-ccccCCCCCeeEEEEecCCCchhHHHHHH
Q psy17441 169 QLYEMKNAQ----ARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQ-ALTAKNVPVGIIGLKLVNATNEDAHIRDS 243 (458)
Q Consensus 169 ~l~~ik~~~----~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~-~~~~~~~~~g~~g~~~~~~~~~~~~~yDA 243 (458)
.++++.+.. +++|++ ++...+..+++++++.|+.-++.+-|++-. .........++..+.. .....++.|
T Consensus 189 ~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~~~~~~~p~lttv~~----~~~~~g~~a 263 (298)
T 3tb6_A 189 KVKATLEKNSKHMPTAILC-YNDEIALKVIDMLREMDLKVPEDMSIVGYDDSHFAQISEVKLTSVKH----PKSVLGKAA 263 (298)
T ss_dssp HHHHHHHHTTTSCCSEEEC-SSHHHHHHHHHHHHHTTCCTTTTCEEECSBCCTHHHHSSSCCBEEEC----CTHHHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEE-eCcHHHHHHHHHHHHcCCCCCCceEEEecCCcHHHhccCCCCceEec----CHHHHHHHH
Confidence 444443322 566554 456678889999999999755555444332 1111111222322321 234456666
Q ss_pred HHHHHHHH
Q psy17441 244 IYVLTSAL 251 (458)
Q Consensus 244 v~~la~Al 251 (458)
+.++...+
T Consensus 264 ~~~l~~~i 271 (298)
T 3tb6_A 264 AKYVIDCL 271 (298)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665444
No 114
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=96.38 E-value=0.11 Score=49.17 Aligned_cols=209 Identities=11% Similarity=0.124 Sum_probs=114.3
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+. +...++ +......+.+...+|.+|| . +.... . +.+...++|+|......+ + .+++
T Consensus 90 g~~~~~~--~~~~~~-~~~~~~~~~l~~~~vdgiI-~-~~~~~-~-----~~l~~~~iPvV~~~~~~~---~--~~~~-- 151 (330)
T 3ctp_A 90 GYTLFLC--NTDDDK-EKEKTYLEVLQSHRVAGII-A-SRSQC-E-----DEYANIDIPVVAFENHIL---D--NIIT-- 151 (330)
T ss_dssp TCEEEEE--ECTTCH-HHHHHHHHHHHHTTCSEEE-E-ETCCC-S-----GGGTTCCSCEEEESSCCC---T--TSCE--
T ss_pred CCEEEEE--eCCCCh-HHHHHHHHHHHhCCCCEEE-E-CCCCC-H-----HHHHhcCCCEEEEeccCC---C--CCCE--
Confidence 4554443 233343 2233345556677888888 4 32221 1 224568999998765332 1 1232
Q ss_pred ecCCCchhHHHHHHHHHHhcCCeEEEEEEecCc--chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKHFNYMKVIFIHSSDT--DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYE 172 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~--~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ 172 (458)
+...+..-+..+++.|...|.+++++|..... ......+.+.+.+++.|+.+. .....-..+..+-...+++
T Consensus 152 -V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~-----~~~~~~~~~~~~~~~~~~~ 225 (330)
T 3ctp_A 152 -ISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFLDGARAKDLEID-----FIEFQHDFQVKMLEEDINS 225 (330)
T ss_dssp -EEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCE-----EEECSSSCCGGGGGCCCTT
T ss_pred -EEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCcc-----eeEEcCCCCHHHHHHHHHH
Confidence 33455555667778887789999999986543 456778899999999885431 1111101111111122233
Q ss_pred HHh-ccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEe-eccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHHH
Q psy17441 173 MKN-AQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIV-TEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSA 250 (458)
Q Consensus 173 ik~-~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~-t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~A 250 (458)
+.+ ..+++|++ ++...+..+++++++.|+.-++.+-++ -|..........++..+.. .....++.|+.++...
T Consensus 226 ll~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvvg~D~~~~~~~~~p~lttv~~----~~~~~g~~a~~~l~~~ 300 (330)
T 3ctp_A 226 MKDIVNYDGIFV-FNDIAAATVMRALKKRGVSIPQEVQIIGFDNSFIGELLYPSLTTINQ----PIEALAYTIIELLIKI 300 (330)
T ss_dssp GGGGGGSSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEECSBCCTHHHHSSSCCBEEEC----CHHHHHHHHHHHHHHH
T ss_pred HhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEEEECChHHHhcCCCCcceEEC----CHHHHHHHHHHHHHHH
Confidence 322 35777775 455668889999999999755444444 3322111111122322221 2345667777766655
Q ss_pred HH
Q psy17441 251 LK 252 (458)
Q Consensus 251 l~ 252 (458)
++
T Consensus 301 i~ 302 (330)
T 3ctp_A 301 IN 302 (330)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 115
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=96.37 E-value=0.038 Score=51.05 Aligned_cols=193 Identities=9% Similarity=-0.015 Sum_probs=111.9
Q ss_pred HHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHHhcCC
Q psy17441 37 CKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNY 116 (458)
Q Consensus 37 ~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w 116 (458)
.+.+.+.++.+||- ..... ....... ....++|+|..+...+ .++ .+...+..-+..+++.|...|.
T Consensus 61 ~~~l~~~~vdgiIi--~~~~~-~~~~~~~-~~~~~iPvV~~~~~~~------~~~---~V~~D~~~~~~~a~~~L~~~G~ 127 (289)
T 3g85_A 61 KGISKENSFDAAII--ANISN-YDLEYLN-KASLTLPIILFNRLSN------KYS---SVNVDNYKMGEKASLLFAKKRY 127 (289)
T ss_dssp GGGSTTTCCSEEEE--SSCCH-HHHHHHH-HCCCSSCEEEESCCCS------SSE---EEEECHHHHHHHHHHHHHHTTC
T ss_pred HHHHhccCCCEEEE--ecCCc-ccHHHHH-hccCCCCEEEECCCCC------CCC---EEEeCHHHHHHHHHHHHHHcCC
Confidence 34455678988887 32221 2222222 3467899998876322 123 2345666677788888888899
Q ss_pred eEEEEEEecCc--chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhc--cCeEEEEEeChhhHHH
Q psy17441 117 MKVIFIHSSDT--DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNA--QARVYLMYASKQDAEI 192 (458)
Q Consensus 117 ~~v~ii~~~d~--~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~--~~~viil~~~~~~~~~ 192 (458)
++++++....+ ......+.+.+.+++.|+.+.... ......+..+....++++-+. .+++|+ +++...+..
T Consensus 128 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g 202 (289)
T 3g85_A 128 KSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENH----IIAAENSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALG 202 (289)
T ss_dssp CBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGG----EEECCSSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHH
T ss_pred CEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhh----eeccCCCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHH
Confidence 99999986543 456778999999999885431111 111222333444555665543 356665 456667888
Q ss_pred HHHHHHhcCCcccceEEEee-c--cccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHHHH
Q psy17441 193 IFKDAQYLNMTETGYVWIVT-E--QALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSAL 251 (458)
Q Consensus 193 il~~a~~~g~~~~~~~wi~t-~--~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~Al 251 (458)
+++++++.|+.-++.+-|++ | ...........+..+.. .....++.|+.++...+
T Consensus 203 ~~~al~~~g~~vP~di~vig~d~~~~~~~~~~~p~lttv~~----~~~~~g~~a~~~l~~~i 260 (289)
T 3g85_A 203 VISVLNKRQISIPDDIEIVAIGMNDREYTEFSTPPVTIVDI----PIEEMAGTCISLVEKLI 260 (289)
T ss_dssp HHHHHHHTTCCTTTTCEEEEEECSCHHHHHSSSSCCEEEEC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEEeCCCCcchhhccCCCCeEEcC----CHHHHHHHHHHHHHHHH
Confidence 99999999997555554443 3 21111111222333321 23455666666665444
No 116
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=96.33 E-value=0.39 Score=45.36 Aligned_cols=189 Identities=11% Similarity=0.001 Sum_probs=108.9
Q ss_pred HHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHHh
Q psy17441 34 LSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKH 113 (458)
Q Consensus 34 ~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~ 113 (458)
....+.+...++.+||- .. . ...+...++|+|..+...+. ...++ +...+..-+..+++.|..
T Consensus 109 ~~~~~~l~~~~vdGiIi--~~----~----~~~~~~~~iPvV~~~~~~~~----~~~~~---V~~D~~~~~~~a~~~L~~ 171 (333)
T 3jvd_A 109 DVVMESLISIQAAGIIH--VP----V----VGSIAPEGIPMVQLTRGELG----PGFPR---VLCDDEAGFFQLTESVLG 171 (333)
T ss_dssp HHHHHHHHHHTCSEEEE--CC----C----TTCCC-CCSCEEEECC--------CCSCE---EEECHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCCCEEEE--cc----h----HHHHhhCCCCEEEECccCCC----CCCCE---EEEChHHHHHHHHHHHHH
Confidence 33445555667777775 21 1 22345678999987654321 11232 334556666777888888
Q ss_pred cCCeEEEEEEecCc--chhHHHHHHHHhhhccCCcceeeEEEEEEEE-eCCCcccHHHHHHHHHhcc-CeEEEEEeChhh
Q psy17441 114 FNYMKVIFIHSSDT--DGRALLGRFQTTSQNQEDDVEIKVQVEAVIE-FEPGLTTFKDQLYEMKNAQ-ARVYLMYASKQD 189 (458)
Q Consensus 114 ~~w~~v~ii~~~d~--~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~-~~~~~~d~~~~l~~ik~~~-~~viil~~~~~~ 189 (458)
.|-++++++....+ ......+.+.+.+++.|+ . .... -..+..+-...++++.+.. ++.|++ ++...
T Consensus 172 ~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~------~--~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~-~nd~~ 242 (333)
T 3jvd_A 172 GSGMNIAALVGEESLSTTQERMRGISHAASIYGA------E--VTFHFGHYSVESGEEMAQVVFNNGLPDALIV-ASPRL 242 (333)
T ss_dssp SSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC------E--EEEEECCSSHHHHHHHHHHHHHTCCCSEEEE-CCHHH
T ss_pred CCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCC------C--EEEecCCCCHHHHHHHHHHHhcCCCCcEEEE-CCHHH
Confidence 89999999986643 455778999999999883 2 1122 1223334445555554433 666664 55667
Q ss_pred HHHHHHHHHhcCCcccceEEE-eeccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHHHHH
Q psy17441 190 AEIIFKDAQYLNMTETGYVWI-VTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSALK 252 (458)
Q Consensus 190 ~~~il~~a~~~g~~~~~~~wi-~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~Al~ 252 (458)
+..+++++++.|+.-++.+-| .-|..........++..+.. .....++-|+.++...++
T Consensus 243 A~g~~~al~~~G~~vP~disvig~D~~~~~~~~~p~lttv~~----~~~~~g~~Av~~L~~~i~ 302 (333)
T 3jvd_A 243 MAGVMRAFTRLNVRVPHDVVIGGYDDPEWYSFVGAGITTFVP----PHEEMGKEAVRLLVDLIE 302 (333)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEEEESCCGGGGGSTTSCEEEEC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCceEEEEECChHHHHhcCCCceEEec----CHHHHHHHHHHHHHHHhc
Confidence 888999999999975544444 33332222222233433332 234566667666655443
No 117
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=96.25 E-value=0.15 Score=48.81 Aligned_cols=199 Identities=12% Similarity=0.055 Sum_probs=114.6
Q ss_pred HHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHHh
Q psy17441 34 LSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKH 113 (458)
Q Consensus 34 ~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~ 113 (458)
....+.+...++.++|-. +... . ......+...++|+|..+.... + +....+...+..-+..+++.|..
T Consensus 116 ~~~~~~l~~~~vdGiI~~-~~~~--~-~~~~~~l~~~~iPvV~i~~~~~---~----~~~~~V~~D~~~~~~~a~~~L~~ 184 (355)
T 3e3m_A 116 EQLVETMLRRRPEAMVLS-YDGH--T-EQTIRLLQRASIPIVEIWEKPA---H----PIGHTVGFSNERAAYDMTNALLA 184 (355)
T ss_dssp HHHHHHHHHTCCSEEEEE-CSCC--C-HHHHHHHHHCCSCEEEESSCCS---S----CSSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEe-CCCC--C-HHHHHHHHhCCCCEEEECCccC---C----CCCCEEEeChHHHHHHHHHHHHH
Confidence 344566667888888862 2222 2 3444556678999998743211 1 11223445666666777888888
Q ss_pred cCCeEEEEEEecCc--c-hhHHHHHHHHhhhccCCcceeeEEEEEEEEeCC-CcccHHHHHHHHHh--ccCeEEEEEeCh
Q psy17441 114 FNYMKVIFIHSSDT--D-GRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEP-GLTTFKDQLYEMKN--AQARVYLMYASK 187 (458)
Q Consensus 114 ~~w~~v~ii~~~d~--~-g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~-~~~d~~~~l~~ik~--~~~~viil~~~~ 187 (458)
.|.+++++|..... . .....+.+.+.+++.|+.+.. . ....... +..+-...++++.+ ..+++|++ ++.
T Consensus 185 ~G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~--~--~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD 259 (355)
T 3e3m_A 185 RGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQ--E--IRLGAPPLSIEDGVAAAELILQEYPDTDCIFC-VSD 259 (355)
T ss_dssp TTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCC--E--EEESCSSCCHHHHHHHHHHHHHHCTTCCEEEE-SSH
T ss_pred CCCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCc--c--EEEecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCh
Confidence 89999999986543 2 567789999999998855411 0 1111111 22233344555443 34666554 566
Q ss_pred hhHHHHHHHHHhcCCcccceEEEee-ccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHHHHH
Q psy17441 188 QDAEIIFKDAQYLNMTETGYVWIVT-EQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSALK 252 (458)
Q Consensus 188 ~~~~~il~~a~~~g~~~~~~~wi~t-~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~Al~ 252 (458)
..+..+++++++.|+.-++.+-|++ |...........+..+.. .....++-|+.++...++
T Consensus 260 ~~A~g~~~al~~~G~~vP~disvigfD~~~~~~~~~p~lttv~~----~~~~~g~~A~~~l~~~i~ 321 (355)
T 3e3m_A 260 MPAFGLLSRLKSIGVAVPEQVSVVGFGNFEVSRFASPEISTVRV----DPIAIGRETGSLILRLLD 321 (355)
T ss_dssp HHHHHHHHHHHHHTCCTTTTCEEECSSCCHHHHHSSSCCBEEEC----CHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEECChHHHhccCCCceEEec----CHHHHHHHHHHHHHHHhc
Confidence 7788899999999997655554443 322111111222333332 234566777777665553
No 118
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=96.25 E-value=0.49 Score=43.00 Aligned_cols=180 Identities=12% Similarity=0.085 Sum_probs=99.6
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+. ....+... .....+.+...+|.++|-. +.... ........+...++|+|......+ +....++
T Consensus 31 g~~~~~~--~~~~~~~~-~~~~i~~l~~~~vdgiIi~-~~~~~-~~~~~~~~~~~~~iPvV~i~~~~~---~~~~~~~-- 100 (271)
T 2dri_A 31 GYNLVVL--DSQNNPAK-ELANVQDLTVRGTKILLIN-PTDSD-AVGNAVKMANQANIPVITLDRQAT---KGEVVSH-- 100 (271)
T ss_dssp TCEEEEE--ECTTCHHH-HHHHHHHHTTTTEEEEEEC-CSSTT-TTHHHHHHHHHTTCCEEEESSCCS---SSCCSEE--
T ss_pred CcEEEEe--CCCCCHHH-HHHHHHHHHHcCCCEEEEe-CCChH-HHHHHHHHHHHCCCcEEEecCCCC---CCceeEE--
Confidence 5555443 33444433 3344566768899998862 32221 212233445567999998765322 1111112
Q ss_pred ecCCCchhHHHHHHHHHHhc--CCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKHF--NYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQL 170 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~--~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l 170 (458)
+...+..-+..+++.|... |-++++++.... .......+.+++.+++.|+. +.....-..+...-...+
T Consensus 101 -V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~------~~~~~~~~~~~~~~~~~~ 173 (271)
T 2dri_A 101 -IASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN------VLASQPADFDRIKGLNVM 173 (271)
T ss_dssp -EEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCE------EEEEEECTTCHHHHHHHH
T ss_pred -EecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHHHHhcCCCE------EEEecCCCCCHHHHHHHH
Confidence 2344455556667766555 568999998543 23456788899999988732 221111111222333444
Q ss_pred HHHHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeecc
Q psy17441 171 YEMKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQ 214 (458)
Q Consensus 171 ~~ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~ 214 (458)
+++.+. .++.|+ +.+...+..+++++++.|+ ++-..+.-|.
T Consensus 174 ~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~g~--~dv~vvGfD~ 216 (271)
T 2dri_A 174 QNLLTAHPDVQAVF-AQNDEMALGALRALQTAGK--SDVMVVGFDG 216 (271)
T ss_dssp HHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTC--CSCEEEEEEC
T ss_pred HHHHHhCCCccEEE-ECCCcHHHHHHHHHHHcCC--CCcEEEEecC
Confidence 554333 355544 4566678899999999998 2345555443
No 119
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=96.19 E-value=0.23 Score=48.67 Aligned_cols=158 Identities=9% Similarity=0.035 Sum_probs=94.3
Q ss_pred HhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeE
Q psy17441 39 FLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMK 118 (458)
Q Consensus 39 ~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~ 118 (458)
.+.+.+|.+||- ... .......+...++|+|..+...+...+ .+.+-.+...+..-+..+++.|...|-++
T Consensus 71 ~l~~~~vDGiIi--~~~----~~~~~~~l~~~~iPvV~i~~~~~~~~~---~~~~~~V~~D~~~~g~~a~~~L~~~G~r~ 141 (412)
T 4fe7_A 71 KIKDWLGDGVIA--DFD----DKQIEQALADVDVPIVGVGGSYHLAES---YPPVHYIATDNYALVESAFLHLKEKGVNR 141 (412)
T ss_dssp ----CCCSEEEE--ETT----CHHHHHHHTTCCSCEEEEEECCSSGGG---SCSSEEEEECHHHHHHHHHHHHHHTTCCE
T ss_pred hHhcCCCCEEEE--ecC----ChHHHHHHhhCCCCEEEecCCcccccc---CCCCCEEEeCHHHHHHHHHHHHHHcCCce
Confidence 344567878875 221 134455667889999988764332111 12223344566666777888888889999
Q ss_pred EEEEEecCcc----hhHHHHHHHHhhhccCCcceeeEEEEEEEEeCC---CcccHHHHHHHHHh--ccCeEEEEEeChhh
Q psy17441 119 VIFIHSSDTD----GRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEP---GLTTFKDQLYEMKN--AQARVYLMYASKQD 189 (458)
Q Consensus 119 v~ii~~~d~~----g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~---~~~d~~~~l~~ik~--~~~~viil~~~~~~ 189 (458)
++++...... .....+.+.+.+++.|+.. .+ ...... +..+....+.++.+ ..+++|+ +++...
T Consensus 142 I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~----~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~ 214 (412)
T 4fe7_A 142 FAFYGLPESSGKRWATEREYAFRQLVAEEKYRG----VV--YQGLETAPENWQHAQNRLADWLQTLPPQTGII-AVTDAR 214 (412)
T ss_dssp EEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCC----EE--ECCSCSSCSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHH
T ss_pred EEEecccccccccHHHHHHHHHHHHHHHcCCCc----cc--cccccccccchhhHHHHHHHHHHhCCCCeEEE-EEecHH
Confidence 9999865432 5678899999999988432 11 111111 11123344444433 3455555 456677
Q ss_pred HHHHHHHHHhcCCcccceEEEee
Q psy17441 190 AEIIFKDAQYLNMTETGYVWIVT 212 (458)
Q Consensus 190 ~~~il~~a~~~g~~~~~~~wi~t 212 (458)
+..+++++++.|+.-++.+-+++
T Consensus 215 A~g~~~al~~~G~~vP~disvig 237 (412)
T 4fe7_A 215 ARHILQVCEHLHIPVPEKLCVIG 237 (412)
T ss_dssp HHHHHHHHHHHTCCTTTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCceEEEEe
Confidence 88899999999997655444443
No 120
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=96.17 E-value=0.098 Score=47.94 Aligned_cols=150 Identities=10% Similarity=-0.007 Sum_probs=91.6
Q ss_pred CeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHHhcCCeEEEEEE
Q psy17441 44 RVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIH 123 (458)
Q Consensus 44 ~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~ 123 (458)
++.+||-. +... ....+ ..+...++|+|..+...+ + +.+..+...+..-+..+++.|...|.++++++.
T Consensus 57 ~vdgiI~~-~~~~--~~~~~-~~l~~~~iPvV~~~~~~~---~----~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~ 125 (277)
T 3cs3_A 57 MVDGAIIL-DWTF--PTKEI-EKFAERGHSIVVLDRTTE---H----RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLS 125 (277)
T ss_dssp TCSEEEEE-CTTS--CHHHH-HHHHHTTCEEEESSSCCC---S----TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEE
T ss_pred cccEEEEe-cCCC--CHHHH-HHHHhcCCCEEEEecCCC---C----CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEe
Confidence 56676652 2221 22233 344568999998765322 1 122334455566667777888778999999998
Q ss_pred ecCc--chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhc---cCeEEEEEeChhhHHHHHHHHH
Q psy17441 124 SSDT--DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNA---QARVYLMYASKQDAEIIFKDAQ 198 (458)
Q Consensus 124 ~~d~--~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~---~~~viil~~~~~~~~~il~~a~ 198 (458)
.+.. ......+.+.+.+++.|+.+ . ....+.+..+-...++++.+. .+++|++ .+...+..++++++
T Consensus 126 ~~~~~~~~~~R~~gf~~~l~~~g~~~------~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~ 197 (277)
T 3cs3_A 126 GPEKGYDSQERLAVSTRELTRFGIPY------E-IIQGDFTEPSGYAAAKKILSQPQTEPVDVFA-FNDEMAIGVYKYVA 197 (277)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHTTCCE------E-EEECCSSHHHHHHHHHHHTTSCCCSSEEEEE-SSHHHHHHHHHHHT
T ss_pred CCccCccHHHHHHHHHHHHHHcCCCe------e-EEeCCCChhHHHHHHHHHHhcCCCCCcEEEE-cChHHHHHHHHHHH
Confidence 6532 45577888999999888443 1 111122233344555666544 4566554 55667888999999
Q ss_pred hcCCcccceEEEee
Q psy17441 199 YLNMTETGYVWIVT 212 (458)
Q Consensus 199 ~~g~~~~~~~wi~t 212 (458)
+.|+.-++.+.+++
T Consensus 198 ~~g~~vP~di~vvg 211 (277)
T 3cs3_A 198 ETNYQMGKDIRIIG 211 (277)
T ss_dssp TSSCCBTTTEEEEC
T ss_pred HcCCCCCCcEEEEE
Confidence 99987555555554
No 121
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=96.11 E-value=0.13 Score=46.31 Aligned_cols=205 Identities=10% Similarity=0.013 Sum_probs=112.4
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+.. ...++ +......+.+.++++.++|-. +.... . . ......++|+|..+... . ..+
T Consensus 32 g~~~~~~~--~~~~~-~~~~~~~~~l~~~~vdgiI~~-~~~~~-~-~---~~l~~~~~pvV~~~~~~-----~-~~~--- 93 (255)
T 1byk_A 32 GYDPIMME--SQFSP-QLVAEHLGVLKRRNIDGVVLF-GFTGI-T-E---EMLAHWQSSLVLLARDA-----K-GFA--- 93 (255)
T ss_dssp TCEEEEEE--CTTCH-HHHHHHHHHHHTTTCCEEEEE-CCTTC-C-T---TTSGGGSSSEEEESSCC-----S-SCE---
T ss_pred CCEEEEEe--CCCcH-HHHHHHHHHHHhcCCCEEEEe-cCccc-c-H---HHHHhcCCCEEEEcccc-----C-CCC---
Confidence 55554433 33343 223344566667889888862 22111 1 1 23345689999876421 1 122
Q ss_pred ecCCCchhHHHHHHHHHHhcCCeEEEEEEec--C-cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKHFNYMKVIFIHSS--D-TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLY 171 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~--d-~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~ 171 (458)
.+...+..-+..+++.|...|.++++++... + .......+.+++.+++.|+.+ .. .....+..+-...++
T Consensus 94 ~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~------~~-~~~~~~~~~~~~~~~ 166 (255)
T 1byk_A 94 SVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHP------VA-ALPGLAMKQGYENVA 166 (255)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCC------EE-ECCCSCHHHHHHHSG
T ss_pred EEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCc------ce-eecCCccchHHHHHH
Confidence 2345556666777888888899999999854 2 345677899999999988432 11 111112222223333
Q ss_pred HHHhccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccCCCCCeeEEEEecCCCchhHHHHHHHHHHHHHH
Q psy17441 172 EMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSAL 251 (458)
Q Consensus 172 ~ik~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~la~Al 251 (458)
++.+..+++|++ ++...+..+++++++.|+ ++-..+.-|...........+..+.. .....++-|+.++...+
T Consensus 167 ~~l~~~~~ai~~-~~d~~A~g~~~al~~~g~--~di~vig~d~~~~~~~~~p~lttv~~----~~~~~g~~a~~~l~~~i 239 (255)
T 1byk_A 167 KVITPETTALLC-ATDTLALGASKYLQEQRI--DTLQLASVGNTPLMKFLHPEIVTVDP----GYAEAGRQAACQLIAQV 239 (255)
T ss_dssp GGCCTTCCEEEE-SSHHHHHHHHHHHHHTTC--CSCEEEEECCCHHHHHHCTTSEEEBC----CHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEE-eChHHHHHHHHHHHHcCC--CcEEEEEeCCchhhhccCCCcceEec----CHHHHHHHHHHHHHHHH
Confidence 333345676654 556678889999999998 33444544432211111112222221 23355666666664444
No 122
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=96.09 E-value=0.0046 Score=57.04 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=52.2
Q ss_pred ccccccchhHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHHHHHhhcccceeEEee
Q psy17441 333 EDALNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 391 (458)
Q Consensus 333 ~~~~~~~~~~w~~~~~l~~~g~~~~~p~s~~~Ri~~~~w~~~~~i~~~~yta~l~s~lt 391 (458)
....++.+++||+..++++-|+++..|.+..||++++++.++++.++..+.+++...+.
T Consensus 89 ~~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 89 NWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp -CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999888888888765443
No 123
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=95.91 E-value=0.82 Score=41.91 Aligned_cols=209 Identities=10% Similarity=-0.015 Sum_probs=110.1
Q ss_pred CCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCC-CC--ccccceeecCCCchh
Q psy17441 26 DPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFS-DK--NIHVSFLRTVPPYSH 102 (458)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls-~~--~~~p~~~r~~p~~~~ 102 (458)
..+... .....+.+..++|.+||-. +.... ........+...++|+|......+... .+ ..+. -.+...+..
T Consensus 42 ~~~~~~-~~~~~~~~~~~~vdgiIi~-~~~~~-~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~--~~V~~D~~~ 116 (288)
T 1gud_A 42 EGDFQS-QLQLFEDLSNKNYKGIAFA-PLSSV-NLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVE--AFVTTDNVA 116 (288)
T ss_dssp TTCHHH-HHHHHHHHHTSSEEEEEEC-CSSSS-TTHHHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCS--EEEECCHHH
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEEe-CCChH-HHHHHHHHHHHCCCeEEEECCCCCcccccccCCcee--EEECCChHH
Confidence 344432 3334566768899998862 22221 111223334557999998765321100 00 0120 123345555
Q ss_pred HHHHHHHHHHhc-C--CeEEEEEEecCc--chhHHHHHHHHhhhcc-CCcceeeEEEEEEEEeCCCcccHHHHHHHHHhc
Q psy17441 103 QADVWVELLKHF-N--YMKVIFIHSSDT--DGRALLGRFQTTSQNQ-EDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNA 176 (458)
Q Consensus 103 ~~~ai~~ll~~~-~--w~~v~ii~~~d~--~g~~~~~~l~~~l~~~-gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~ 176 (458)
-+..+++.|... | -+++++|..... ......+.+++.+++. | +.+........+.++-...++++.+.
T Consensus 117 ~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g------~~~~~~~~~~~~~~~~~~~~~~ll~~ 190 (288)
T 1gud_A 117 VGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQ------IKLVASQPADWDRIKALDVATNVLQR 190 (288)
T ss_dssp HHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTT------EEEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCC------cEEEEeecCCccHHHHHHHHHHHHHh
Confidence 566677777665 8 899999985533 2456788899999876 6 33222221121223334445554433
Q ss_pred --cCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccCC-CCCee--EEEEecCCCchhHHHHHHHHHHHHHH
Q psy17441 177 --QARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKN-VPVGI--IGLKLVNATNEDAHIRDSIYVLTSAL 251 (458)
Q Consensus 177 --~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~~-~~~g~--~g~~~~~~~~~~~~~yDAv~~la~Al 251 (458)
.++.|++ .+...+..+++++++.|+. ++-..+.-|....... +..+- ..+.. ......+-|+.++...+
T Consensus 191 ~~~~~ai~~-~nD~~A~g~~~al~~~G~~-~dv~vvGfD~~~~~~~~~~~p~~lttv~q----~~~~~g~~a~~~l~~~i 264 (288)
T 1gud_A 191 NPNIKAIYC-ANDTMAMGVAQAVANAGKT-GKVLVVGTDGIPEARKMVEAGQMTATVAQ----NPADIGATGLKLMVDAE 264 (288)
T ss_dssp CTTCCEEEE-SSHHHHHHHHHHHHHTTCT-TTSEEEEESCCHHHHHHHHHTSSCEEEEC----CHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEE-CCCchHHHHHHHHHhcCCC-CCeEEEEeCCCHHHHHHHHcCccEEEEEc----CHHHHHHHHHHHHHHHH
Confidence 3555554 5566788999999999985 3445555554322111 11221 22221 23355666776665544
No 124
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=95.82 E-value=0.29 Score=44.77 Aligned_cols=202 Identities=14% Similarity=0.037 Sum_probs=115.1
Q ss_pred ceE-EEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecC-CCCCCCCccccc
Q psy17441 15 GVT-FSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSR-DSAFSDKNIHVS 92 (458)
Q Consensus 15 ~~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~-~~~ls~~~~~p~ 92 (458)
|++ +.+. ....+... .....+.+...++.+||-. + .. . .-+...++|+|..+.. .+ + +.
T Consensus 40 g~~~~~~~--~~~~~~~~-~~~~~~~l~~~~vdgiIi~-~--~~-~-----~~~~~~~iPvV~~~~~~~~---~----~~ 100 (277)
T 3hs3_A 40 GYTALISF--STNSDVKK-YQNAIINFENNNVDGIITS-A--FT-I-----PPNFHLNTPLVMYDSANIN---D----DI 100 (277)
T ss_dssp TCEEEEEE--CSSCCHHH-HHHHHHHHHHTTCSEEEEE-C--CC-C-----CTTCCCSSCEEEESCCCCC---S----SS
T ss_pred CCCEEEEE--eCCCChHH-HHHHHHHHHhCCCCEEEEc-c--hH-H-----HHHHhCCCCEEEEcccccC---C----CC
Confidence 555 4443 23334322 3344566667888888862 2 21 1 1245679999987653 22 1 22
Q ss_pred eeecCCCchhHHHHHHHHHHhcCCeEEEEEEecC--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHH
Q psy17441 93 FLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSD--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQL 170 (458)
Q Consensus 93 ~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l 170 (458)
+ .+...+..-+..+++.|. .|.++++++.... .......+.+.+.+++.|+. +... ... ...+ .+.+
T Consensus 101 ~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~------~~~~-~~~-~~~~-~~~~ 169 (277)
T 3hs3_A 101 V-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKID------YLLE-ETP-ENNP-YISA 169 (277)
T ss_dssp E-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE------EEEE-ECC-SSCH-HHHH
T ss_pred E-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCC------CCCC-Ccc-CCch-HHHH
Confidence 3 445566666777778777 9999999998653 34557789999999998832 2222 222 2222 4555
Q ss_pred HHHHh--ccCeEEEEEeChhhHHHHHHHHHhcCCcccceEEEee-ccccccCCCCCeeEEEEecCCCchhHHHHHHHHHH
Q psy17441 171 YEMKN--AQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVT-EQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVL 247 (458)
Q Consensus 171 ~~ik~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t-~~~~~~~~~~~g~~g~~~~~~~~~~~~~yDAv~~l 247 (458)
+++.+ ..+++|++ .+...+..+++++++.|+.-++.+-+++ |..........++..+.. .....++.|+.++
T Consensus 170 ~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~p~lttv~~----~~~~~g~~av~~l 244 (277)
T 3hs3_A 170 QSALNKSNQFDAIIT-VNDLYAAEIIKEAKRRNLKIPDDFQLVGYDNNILCGYTSPTISTIDQ----NPKLIGQTAAHRL 244 (277)
T ss_dssp HHHHHTGGGCSEEEC-SSHHHHHHHHHHHHHTTCCTTTTCEEECSBCCGGGGTSSSCCBEEEC----CHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEEeeCCcHHHhcCCCCccEEec----CHHHHHHHHHHHH
Confidence 55544 45666654 4556788899999999997554454443 322211112222333322 2344566666665
Q ss_pred HHHH
Q psy17441 248 TSAL 251 (458)
Q Consensus 248 a~Al 251 (458)
...+
T Consensus 245 ~~~i 248 (277)
T 3hs3_A 245 LDLM 248 (277)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 4443
No 125
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=95.82 E-value=0.0066 Score=56.88 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=48.0
Q ss_pred ccchhHHHHHHHhhccCCCCCCCCchhhH------HHHHHHHHHHHHHHhhcccceeEEe
Q psy17441 337 NLSSAIWFAWGVLLNSGIGEGTPRSFSAR------VLGMVWAGFAMIIVASYTANLAAFL 390 (458)
Q Consensus 337 ~~~~~~w~~~~~l~~~g~~~~~p~s~~~R------i~~~~w~~~~~i~~~~yta~l~s~l 390 (458)
++.+++||++.++++.|++|..|.+..|| +++.+|.++++.++++..+.++..+
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~ 283 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWL 283 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999998 5999999999999888777665554
No 126
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=95.75 E-value=0.098 Score=50.25 Aligned_cols=214 Identities=7% Similarity=-0.076 Sum_probs=119.1
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+.+.+..++.+.+. ......+.+...+|.+||-. +... . ......+...++|+|..+...+ . ..+++
T Consensus 101 g~~~~~~~~~~~~~~--~~~~~~~~l~~~~vdGiIi~-~~~~--~-~~~~~~l~~~~iPvV~i~~~~~---~-~~~~~-- 168 (366)
T 3h5t_A 101 DTQLTLIPASPASSV--DHVSAQQLVNNAAVDGVVIY-SVAK--G-DPHIDAIRARGLPAVIADQPAR---E-EGMPF-- 168 (366)
T ss_dssp SCEEEEEECCCCTTC--CHHHHHHHHHTCCCSCEEEE-SCCT--T-CHHHHHHHHHTCCEEEESSCCS---C-TTCCE--
T ss_pred hCCEEEEEcCCCccH--HHHHHHHHHHhCCCCEEEEe-cCCC--C-hHHHHHHHHCCCCEEEECCccC---C-CCCCE--
Confidence 666665544433221 12233455667788887752 2221 1 2334455667999998765221 1 11233
Q ss_pred ecCCCchhHHHHHHHHHHhcCCeEEEEEEec-------------------CcchhHHHHHHHHhhhccCCcceeeEEEEE
Q psy17441 95 RTVPPYSHQADVWVELLKHFNYMKVIFIHSS-------------------DTDGRALLGRFQTTSQNQEDDVEIKVQVEA 155 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~-------------------d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~ 155 (458)
+...+..-+..+++.|...|.+++++|... ........+.+.+.+++.|+.+.... +
T Consensus 169 -V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~-~-- 244 (366)
T 3h5t_A 169 -IAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVP-I-- 244 (366)
T ss_dssp -EEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSC-E--
T ss_pred -EEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcce-E--
Confidence 345666667778888888999999999831 22456778999999999886542111 1
Q ss_pred EEEeCCCcccHHHHHHHHHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceE-EEeeccccccCCCCCeeEEEEecC
Q psy17441 156 VIEFEPGLTTFKDQLYEMKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYV-WIVTEQALTAKNVPVGIIGLKLVN 232 (458)
Q Consensus 156 ~~~~~~~~~d~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~-wi~t~~~~~~~~~~~g~~g~~~~~ 232 (458)
......+..+-...++++.+. .+++|++ ++...+..+++++++.|+.-++.+ .+.-|...... ..++..+..
T Consensus 245 ~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~disvigfD~~~~~~--~~~lttv~q-- 319 (366)
T 3h5t_A 245 MECWINNRQHNFEVAKELLETHPDLTAVLC-TVDALAFGVLEYLKSVGKSAPADLSLTGFDGTHMAL--ARDLTTVIQ-- 319 (366)
T ss_dssp EEESSCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCHHHH--HTTCCEEEC--
T ss_pred EEcCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEEEECCChhhc--CCCccEEEe--
Confidence 111111222333445555432 4666655 455678889999999999755444 34334322111 112333332
Q ss_pred CCchhHHHHHHHHHHHHHH
Q psy17441 233 ATNEDAHIRDSIYVLTSAL 251 (458)
Q Consensus 233 ~~~~~~~~yDAv~~la~Al 251 (458)
.....++-|+.++...+
T Consensus 320 --~~~~~G~~Av~~L~~~i 336 (366)
T 3h5t_A 320 --PNKLKGFKAGETLLKMI 336 (366)
T ss_dssp --CHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHh
Confidence 23456677777665555
No 127
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=95.59 E-value=0.12 Score=48.03 Aligned_cols=214 Identities=14% Similarity=0.079 Sum_probs=119.8
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+.. ...+. +......+.+...+|.+||-. +... . . ....+...++|+|..+...+. ....+
T Consensus 44 g~~~~~~~--~~~~~-~~~~~~~~~l~~~~vdGiIi~-~~~~--~-~-~~~~~~~~~iPvV~~~~~~~~---~~~~~--- 109 (301)
T 3miz_A 44 GKTILIAN--TGGSS-EREVEIWKMFQSHRIDGVLYV-TMYR--R-I-VDPESGDVSIPTVMINCRPQT---RELLP--- 109 (301)
T ss_dssp TCEEEEEE--CTTCH-HHHHHHHHHHHHTTCSEEEEE-EEEE--E-E-CCCCCTTCCCCEEEEEEECSS---TTSSC---
T ss_pred CCEEEEEe--CCCCh-HHHHHHHHHHHhCCCCEEEEe-cCCc--c-H-HHHHHHhCCCCEEEECCCCCC---CCCCC---
Confidence 55554433 33343 223444566667788777752 2111 1 1 334455678999988764321 10122
Q ss_pred ecCCCchhHHHHHHHHHHhcCCeEEEEEEecCc--chhHHHHHHHHhhhccCCcceeeEEEEEEEEe---CCCcccHH--
Q psy17441 95 RTVPPYSHQADVWVELLKHFNYMKVIFIHSSDT--DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEF---EPGLTTFK-- 167 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~--~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~---~~~~~d~~-- 167 (458)
.+...+..-+..+++.|...|.++++++..... ......+.+.+.+++.|+.+.... .... ..+..+-.
T Consensus 110 ~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~----~~~~~~~~~~~~~~~~~ 185 (301)
T 3miz_A 110 SIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLS----ISLGMDGPVGAENNYVF 185 (301)
T ss_dssp EEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEE----EEECEESSTTSCEECHH
T ss_pred EEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcce----EEEcCCCCcCccccHHH
Confidence 234566666777888888899999999986543 355678899999999886542111 1111 11222222
Q ss_pred HHHHHHHhc--cCeEEEEEeChhhHHHHHHHHHhcCCcccceE-EEeecccc-ccCCCCCeeEEEEecCCCchhHHHHHH
Q psy17441 168 DQLYEMKNA--QARVYLMYASKQDAEIIFKDAQYLNMTETGYV-WIVTEQAL-TAKNVPVGIIGLKLVNATNEDAHIRDS 243 (458)
Q Consensus 168 ~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~-wi~t~~~~-~~~~~~~g~~g~~~~~~~~~~~~~yDA 243 (458)
..++++.+. .+++|++ ++...+..+++++++.|+.-++.+ .+.-|... .......++..+.. .....++-|
T Consensus 186 ~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~vig~D~~~~~~~~~~p~lttv~~----~~~~~g~~a 260 (301)
T 3miz_A 186 AAATEMLKQDDRPTAIMS-GNDEMAIQIYIAAMALGLRIPQDVSIVGFDDFRTVTMALKPELTTAAL----PYYDLGREG 260 (301)
T ss_dssp HHHHHHHTSTTCCSEEEE-SSHHHHHHHHHHHHTTTCCHHHHCEEECSBCCHHHHTTSSSCCBEEEC----CHHHHHHHH
T ss_pred HHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeeEEEeCCcHHHhccCCCCeeEEec----CHHHHHHHH
Confidence 445555443 4566654 455678889999999999754444 34334333 22223334443332 234556666
Q ss_pred HHHHHHHH
Q psy17441 244 IYVLTSAL 251 (458)
Q Consensus 244 v~~la~Al 251 (458)
+.++...+
T Consensus 261 v~~l~~~i 268 (301)
T 3miz_A 261 AKWLNDLI 268 (301)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665444
No 128
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=95.49 E-value=0.025 Score=53.61 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=53.7
Q ss_pred ccccchhHHHHHHHhhccCCCCCCCC--chhhHHHHHHHHHHHHHHHhhcccceeEEeeeccC
Q psy17441 335 ALNLSSAIWFAWGVLLNSGIGEGTPR--SFSARVLGMVWAGFAMIIVASYTANLAAFLVLERP 395 (458)
Q Consensus 335 ~~~~~~~~w~~~~~l~~~g~~~~~p~--s~~~Ri~~~~w~~~~~i~~~~yta~l~s~lt~~~~ 395 (458)
..++.+++||++.++++.|+|+..|. +..||+++.+=.+.++++.+.-++-+.+-++.++-
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 151 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKK 151 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 45789999999999999999999996 68899999999999999999999888777765543
No 129
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=95.07 E-value=0.93 Score=42.52 Aligned_cols=162 Identities=14% Similarity=0.063 Sum_probs=93.5
Q ss_pred HHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhccc-CCcEEeeecCCCCCCCCccccceeecCCCchhHHHHH----HH
Q psy17441 35 SVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFY-HIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVW----VE 109 (458)
Q Consensus 35 ~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~-~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai----~~ 109 (458)
...+.+.++++.+||..++ . ...++..++..+ ++|++......+ +....+++ -.+..++..+ +.
T Consensus 53 ~~l~~l~~~~~dgIi~~~~--~--~~~~~~~~a~~~p~~p~v~id~~~~---~~~~~~~v----~~d~~~~~~lag~~a~ 121 (318)
T 2fqx_A 53 PSLSAFADENMGLVVACGS--F--LVEAVIETSARFPKQKFLVIDAVVQ---DRDNVVSA----VFGQNEGSFLVGVAAA 121 (318)
T ss_dssp HHHHHHHHTTCSEEEEEST--T--THHHHHHHHHHCTTSCEEEESSCCC---SCTTEEEE----EECHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCh--h--HHHHHHHHHHHCCCCEEEEEcCccC---CCCCEEEE----EechHHHHHHHHHHHH
Confidence 3456676788999998322 2 223455565544 899987754221 01111221 1244444433 46
Q ss_pred HHHhcCC-eEEEEEEecC-cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCC-CcccHHHHHHHHHhccCeEEEEEeC
Q psy17441 110 LLKHFNY-MKVIFIHSSD-TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEP-GLTTFKDQLYEMKNAQARVYLMYAS 186 (458)
Q Consensus 110 ll~~~~w-~~v~ii~~~d-~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~-~~~d~~~~l~~ik~~~~~viil~~~ 186 (458)
.+...|. ++|++|...+ .........+++.+++.|+.+ .+.....-.- +...-.+..+++.+.++++|+.. .
T Consensus 122 ~l~~~Gh~r~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~-~ 196 (318)
T 2fqx_A 122 LKAKEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDI----QVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQV-A 196 (318)
T ss_dssp HHHHHTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTC----EEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEE-C
T ss_pred HHhccCCCcEEEEEeCcccHHHHHHHHHHHHHHHHHCCCC----EEEEEEccCccCHHHHHHHHHHHHHCCCcEEEEC-C
Confidence 6777787 8999997543 334567888999998877543 2221111111 11223445556656678887654 4
Q ss_pred hhhHHHHHHHHHhcCCcccceEEEeec
Q psy17441 187 KQDAEIIFKDAQYLNMTETGYVWIVTE 213 (458)
Q Consensus 187 ~~~~~~il~~a~~~g~~~~~~~wi~t~ 213 (458)
...+...++++++.|+. ++-+++++-
T Consensus 197 d~~a~Gv~~a~~e~g~~-P~dv~viG~ 222 (318)
T 2fqx_A 197 GGTGNGVIKEARDRRLN-GQDVWVIGV 222 (318)
T ss_dssp GGGHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred CCCchHHHHHHHhhhhc-cCCcEEEEE
Confidence 45678889999998887 555555543
No 130
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=94.57 E-value=0.41 Score=44.86 Aligned_cols=177 Identities=10% Similarity=0.004 Sum_probs=100.7
Q ss_pred ceEEEEeeeeeCCCHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCcccccee
Q psy17441 15 GVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFL 94 (458)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~ 94 (458)
|+++.+.. ...++.. .....+.++.+++.+||-. |..+. ........+...++|+|......+.. .... .
T Consensus 33 g~~~~~~~--~~~~~~~-~~~~i~~~~~~~vdgiIi~-~~~~~-~~~~~~~~~~~~giPvV~~~~~~~~~---~~~~--~ 102 (330)
T 3uug_A 33 GYKTDLQY--ADDDIPN-QLSQIENMVTKGVKVLVIA-SIDGT-TLSDVLKQAGEQGIKVIAYDRLIRNS---GDVS--Y 102 (330)
T ss_dssp TCEEEEEE--CTTCHHH-HHHHHHHHHHHTCSEEEEC-CSSGG-GGHHHHHHHHHTTCEEEEESSCCCSC---TTCC--E
T ss_pred CCEEEEee--CCCCHHH-HHHHHHHHHHcCCCEEEEE-cCCch-hHHHHHHHHHHCCCCEEEECCCCCCC---Ccee--E
Confidence 55554443 4445433 3344566667789888861 33221 33445556677899999987643321 1112 1
Q ss_pred ecCCCchhHHHHHHHHHHh-------cCCeEEEEEEecC--cchhHHHHHHHHhhhcc---CCcceeeEEEEEEE-----
Q psy17441 95 RTVPPYSHQADVWVELLKH-------FNYMKVIFIHSSD--TDGRALLGRFQTTSQNQ---EDDVEIKVQVEAVI----- 157 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~-------~~w~~v~ii~~~d--~~g~~~~~~l~~~l~~~---gi~v~~~~~v~~~~----- 157 (458)
.+...+...+..+++.+.. .|.++++++.... .......+.+++.+++. | ++.+....
T Consensus 103 ~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~-----~~~~~~~~~~~~~ 177 (330)
T 3uug_A 103 YATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYDGAMSVLKPYIDSG-----KLVVKSGQMGMDK 177 (330)
T ss_dssp EEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHHHHHHHHHHHHHHHHHT-----SEECTTCCCSHHH
T ss_pred EEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHHHHHHHHHHHHhccccC-----ceEEeeccccccc
Confidence 2334556666677777766 6889999996543 23456778888888875 3 12211000
Q ss_pred --EeCCCcccHHHHHHHHHh-----ccCeEEEEEeChhhHHHHHHHHHhcCCcccce
Q psy17441 158 --EFEPGLTTFKDQLYEMKN-----AQARVYLMYASKQDAEIIFKDAQYLNMTETGY 207 (458)
Q Consensus 158 --~~~~~~~d~~~~l~~ik~-----~~~~viil~~~~~~~~~il~~a~~~g~~~~~~ 207 (458)
.-..+...-...++++.+ ..+++|++ .+...+..+++++++.|+..++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~-~nd~~A~g~~~al~~~g~~vP~d 233 (330)
T 3uug_A 178 VGTLRWDPATAQARMDNLLSAYYTDAKVDAVLS-PYDGLSIGIISSLKGVGYGTKDQ 233 (330)
T ss_dssp HBCGGGCHHHHHHHHHHHHHHHCSSSCCCEEEC-SSHHHHHHHHHHHHHTTCSSSSS
T ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCCCeEEEEE-CCCchHHHHHHHHHHcCCCCCCC
Confidence 000111223344444433 34555543 45567888999999999976543
No 131
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=93.61 E-value=0.75 Score=41.36 Aligned_cols=125 Identities=8% Similarity=-0.004 Sum_probs=78.9
Q ss_pred HHHHHhhcCCeEEEEEeCCCCCCCch---------HHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHH
Q psy17441 35 SVCKFLISERVYAVIVSHPLTGDLSP---------AAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQAD 105 (458)
Q Consensus 35 ~~~~~l~~~~V~aiIG~~~~~s~~~~---------~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ 105 (458)
..++.|...++.+|+- .|++ .+ .....+.+..++|.++ ...
T Consensus 57 ~aa~~L~~ag~d~i~~---aCts-as~~~G~~~~~~~~~~l~~~~~iPv~~--------------------------~~~ 106 (240)
T 3ixl_A 57 DHARRLQKQGAAVVSL---MCTS-LSFYRGAAFNAALTVAMREATGLPCTT--------------------------MST 106 (240)
T ss_dssp HHHHHHHHTTEEEEEE---CCHH-HHHTTCHHHHHHHHHHHHHHHSSCEEE--------------------------HHH
T ss_pred HHHHHhccCCCCEEEE---CCcH-HHHhcccchHHHHHHHHHhccCCCEEC--------------------------HHH
Confidence 3456666678988885 3431 12 2335555566777764 345
Q ss_pred HHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCC-------CcccHHHHHHH-H-Hhc
Q psy17441 106 VWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEP-------GLTTFKDQLYE-M-KNA 176 (458)
Q Consensus 106 ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~-------~~~d~~~~l~~-i-k~~ 176 (458)
++++.++..|-+||+++.. |.....+.+++.+++.|+.| ..+.. ..... +...+.+.+++ + +..
T Consensus 107 A~~~al~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (240)
T 3ixl_A 107 AVLNGLRALGVRRVALATA---YIDDVNERLAAFLAEESLVP---TGCRS-LGITGVEAMARVDTATLVDLCVRAFEAAP 179 (240)
T ss_dssp HHHHHHHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEE---EEEEE-CCCCCHHHHHTCCHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEE---ecccc-CCCCCcchhhcCCHHHHHHHHHHHhhcCC
Confidence 6777888899999999975 67777788889999888544 11111 00111 23456667777 6 667
Q ss_pred cCeEEEEEeChhhHHHHHHH
Q psy17441 177 QARVYLMYASKQDAEIIFKD 196 (458)
Q Consensus 177 ~~~viil~~~~~~~~~il~~ 196 (458)
+++.|++.|..-....++.+
T Consensus 180 ~adaivL~CT~l~~l~~i~~ 199 (240)
T 3ixl_A 180 DSDGILLSSGGLLTLDAIPE 199 (240)
T ss_dssp TCSEEEEECTTSCCTTHHHH
T ss_pred CCCEEEEeCCCCchhhhHHH
Confidence 89999998876443333343
No 132
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=93.39 E-value=0.064 Score=50.88 Aligned_cols=61 Identities=15% Similarity=0.048 Sum_probs=52.9
Q ss_pred ccccchhHHHHHHHhhccCCCCCCC--CchhhHHHHHHHHHHHHHHHhhcccceeEEeeeccC
Q psy17441 335 ALNLSSAIWFAWGVLLNSGIGEGTP--RSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERP 395 (458)
Q Consensus 335 ~~~~~~~~w~~~~~l~~~g~~~~~p--~s~~~Ri~~~~w~~~~~i~~~~yta~l~s~lt~~~~ 395 (458)
..++.+++||++.++++.|+|+..| .+..||+++.+=.+.++++.+.-++-+.|-++.++-
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 154 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKK 154 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 4578999999999999999999876 488999999999999999999988888777765543
No 133
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=93.35 E-value=0.14 Score=47.53 Aligned_cols=68 Identities=26% Similarity=0.422 Sum_probs=51.8
Q ss_pred EEeeeccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhhC
Q psy17441 388 AFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVKI 458 (458)
Q Consensus 388 s~lt~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~~ 458 (458)
++++ .+-..+|++++||+...++.+.++|++.++..+.++++. +.+++..|+...+++.++++++|++
T Consensus 146 ~i~~-~~~~~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~--~~~~~~~i~~~~~~~~~~~~~~l~~ 213 (294)
T 2rc8_A 146 GILV-RTRGTELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQS--FPEMHEYMRRYNVPATPDGVQYLKN 213 (294)
T ss_dssp EEEE-ETTSCCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHH--CHHHHHHHGGGCBSSHHHHHHHHHS
T ss_pred EEEE-ECCCCCcCChhhhhhcCcccCeEEEEEcCChHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 3443 333457999999974445568899999999999999875 5666666766678999999999863
No 134
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=92.51 E-value=0.082 Score=49.10 Aligned_cols=60 Identities=7% Similarity=-0.068 Sum_probs=46.2
Q ss_pred ccccchhHHHHHHHhhccCCC-CCC-CCchh----hHHHHHHHHHHHHHHHhhcccceeEEeeecc
Q psy17441 335 ALNLSSAIWFAWGVLLNSGIG-EGT-PRSFS----ARVLGMVWAGFAMIIVASYTANLAAFLVLER 394 (458)
Q Consensus 335 ~~~~~~~~w~~~~~l~~~g~~-~~~-p~s~~----~Ri~~~~w~~~~~i~~~~yta~l~s~lt~~~ 394 (458)
-.++.+++|+.+.++++.|++ +.. |.... +++.+...++.++++++.++|-+.+.+....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447899999999999999988 664 55543 4777788888889999999999988775433
No 135
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=92.06 E-value=0.2 Score=46.85 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=43.8
Q ss_pred eeccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhch--hhHHHHHHHHH----cCCCCHHHHHHHhh
Q psy17441 391 VLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQV--ELSNMYRTMEA----NNYDTAEDAIADVK 457 (458)
Q Consensus 391 t~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~gi~~v~ 457 (458)
|++++..+|++++||+ ...++++|++.+++...+|.+.. .|.++|..|+. ..+++.++++++|+
T Consensus 147 tv~~~~~~i~~~~dL~---g~~~~~vg~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 216 (312)
T 1yae_A 147 GSERMESPIDSADDLA---KQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVL 216 (312)
T ss_dssp --------CCSHHHHH---TCSSSEEECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHH
T ss_pred ccccccCCCCCHHHHh---hccCceEEEEeCChHHHHHHhccCchHHHHHHHHHhcCCCcccCCHHHHHHHHH
Confidence 6678888999999998 23356899998888888888753 37778877643 35899999999886
No 136
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=90.09 E-value=11 Score=34.47 Aligned_cols=147 Identities=10% Similarity=-0.025 Sum_probs=81.9
Q ss_pred HHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhccc-CCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHH-HHHH
Q psy17441 35 SVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFY-HIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWV-ELLK 112 (458)
Q Consensus 35 ~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~-~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~-~ll~ 112 (458)
...+.+.++++.+||. .... ...++..++..+ ++|++......+ ... .+++. .+..++..++ .++.
T Consensus 54 ~~l~~l~~~~vdgIi~--~~~~--~~~~~~~~~~~~p~~p~v~id~~~~---~~~-~~~v~----~d~~~g~~lag~la~ 121 (296)
T 2hqb_A 54 RRIKELVDGGVNLIFG--HGHA--FAEYFSTIHNQYPDVHFVSFNGEVK---GEN-ITSLH----FEGYAMGYFGGMVAA 121 (296)
T ss_dssp HHHHHHHHTTCCEEEE--CSTH--HHHHHHTTTTSCTTSEEEEESCCCC---SSS-EEEEE----ECCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEE--cCHh--HHHHHHHHHHHCCCCEEEEEecCcC---CCC-EEEEE----echHHHHHHHHHHHH
Confidence 3456677889999998 4221 223455555544 788887654211 111 12221 3444444333 2233
Q ss_pred h-cCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCC-CcccHHHHHHHHHhccCeEEEEEeChhhH
Q psy17441 113 H-FNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEP-GLTTFKDQLYEMKNAQARVYLMYASKQDA 190 (458)
Q Consensus 113 ~-~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~-~~~d~~~~l~~ik~~~~~viil~~~~~~~ 190 (458)
+ .+-+++++|....... ....+++.+++.|+. .+.....-.. +...-.+..+++.+.++++|+.. ....+
T Consensus 122 ~l~~~~~Ig~i~g~~~~~--r~~Gf~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~-~D~~a 193 (296)
T 2hqb_A 122 SMSETHKVGVIAAFPWQP--EVEGFVDGAKYMNES-----EAFVRYVGEWTDADKALELFQELQKEQVDVFYPA-GDGYH 193 (296)
T ss_dssp HTCSSSEEEEEESCTTCH--HHHHHHHHHHHTTCC-----EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECC-CTTTH
T ss_pred hhccCCeEEEEcCcCchh--hHHHHHHHHHHhCCC-----eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEEC-CCCCC
Confidence 3 2568999998654322 778899999887731 2111111111 11223445556656678877654 44567
Q ss_pred HHHHHHHHhcC
Q psy17441 191 EIIFKDAQYLN 201 (458)
Q Consensus 191 ~~il~~a~~~g 201 (458)
..+++++++.|
T Consensus 194 ~Gv~~a~~e~G 204 (296)
T 2hqb_A 194 VPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 78899999988
No 137
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=88.52 E-value=0.86 Score=42.05 Aligned_cols=62 Identities=60% Similarity=0.911 Sum_probs=48.6
Q ss_pred CCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhhC
Q psy17441 397 TKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVKI 458 (458)
Q Consensus 397 ~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~~ 458 (458)
.++++++||+.........+|++.+++.+.++++...+++++..++...+++.++++++|++
T Consensus 154 ~~i~~~~dl~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (292)
T 1pb7_A 154 TRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRD 215 (292)
T ss_dssp CCCCSTTCHHHHSCBTTBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHT
T ss_pred cCCCCCcCccccCcccceEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHc
Confidence 46899999963222223557999999999999876557788888887889999999999864
No 138
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=88.11 E-value=14 Score=35.13 Aligned_cols=182 Identities=16% Similarity=0.089 Sum_probs=99.9
Q ss_pred HHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCC-CCccccceeecCCCchhHHHHHHHHH
Q psy17441 33 ALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFS-DKNIHVSFLRTVPPYSHQADVWVELL 111 (458)
Q Consensus 33 ~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls-~~~~~p~~~r~~p~~~~~~~ai~~ll 111 (458)
.....+...+.++.+||. ..... -.......+...+++.|-..+....-. ....+..+ .+...+..-+..+++.|
T Consensus 76 I~~I~~~a~~~gyk~II~--n~~~~-~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~di-~V~~Dn~~Ggy~A~~~L 151 (371)
T 3qi7_A 76 INKIVKLADDKEVQAIVV--STDQA-GLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVDV-NLGVSAEERGKVLAERS 151 (371)
T ss_dssp HHHHHGGGGCTTEEEEEE--ECSSC-CCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSSE-EEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCeEEEE--ECCCc-chHHHHHHHHhcCCCEEEEeccccccchhhcccCce-EEEeChHHHHHHHHHHH
Confidence 444444444578999887 32221 224456667777777665554321100 00000112 23344444555666899
Q ss_pred HhcCCeEEEEEEecCc--c--hhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHH-H--------HhccC
Q psy17441 112 KHFNYMKVIFIHSSDT--D--GRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYE-M--------KNAQA 178 (458)
Q Consensus 112 ~~~~w~~v~ii~~~d~--~--g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~-i--------k~~~~ 178 (458)
...|-+++++|....+ + .....+.++++++++|+.+ ......+...+.-....++ | ++.+.
T Consensus 152 i~~Ghk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~------~~~~~~d~t~e~G~~~a~~lL~~~~~~~~~~~~~ 225 (371)
T 3qi7_A 152 KEMGAKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLPF------VQVNTPNINTEEDKNKVKQFLNEDIEKQVKKYGK 225 (371)
T ss_dssp HHTTCSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCE------EEEEECCCSSTHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHCCCCEEEEEeccccccchhHHHHHHHHHHHHHHcCCCc------eeecCCCCchHHHHHHHHHHHhccccchhhccCC
Confidence 9999999999986542 2 3347888999999999543 1111111222122222333 2 23233
Q ss_pred eEEEEEeChhhHHHHHHHHHhcCCcccceEEEeeccccccC-CCCCeeEEEEec
Q psy17441 179 RVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAK-NVPVGIIGLKLV 231 (458)
Q Consensus 179 ~viil~~~~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~~~-~~~~g~~g~~~~ 231 (458)
..-|.+++...+..+++++.+.|+.- ++....++ .-..|.+|+...
T Consensus 226 ~TAIFatND~mAiG~ikal~e~Gi~V-------Ped~~psp~~~yp~alg~~~~ 272 (371)
T 3qi7_A 226 DINVFGVNEYMDEVILTKALELKYIV-------AEQSNPSPIQTYPSVMGLKIS 272 (371)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHCCBB-------CCCSSCCTTTTHHHHHTCCCC
T ss_pred CcEEEECCHHHHHHHHHHHHHcCCcc-------CCCCCCCccccCcchhccccC
Confidence 23455677788999999999999763 22222222 225677777654
No 139
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=87.79 E-value=0.092 Score=28.86 Aligned_cols=21 Identities=81% Similarity=1.445 Sum_probs=17.2
Q ss_pred ccccccchhHHHHHHHhhccC
Q psy17441 333 EDALNLSSAIWFAWGVLLNSG 353 (458)
Q Consensus 333 ~~~~~~~~~~w~~~~~l~~~g 353 (458)
+..+++..++||+|++++..|
T Consensus 4 ~~~~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 4 GDALTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred ccceehhhhHHHhhHhheecc
Confidence 346788999999999998765
No 140
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=85.83 E-value=5 Score=36.65 Aligned_cols=79 Identities=13% Similarity=0.092 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC-------CCcccHHHHHHHHHhc
Q psy17441 104 ADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE-------PGLTTFKDQLYEMKNA 176 (458)
Q Consensus 104 ~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~-------~~~~d~~~~l~~ik~~ 176 (458)
..+.++.++..|-+||+++.. |.......+++.+++.|+.+ ..+.. .... .+...+.+.++++.+.
T Consensus 134 ~~A~~~al~~~g~~rvgvltp---~~~~~~~~~~~~l~~~Gi~v---~~~~~-~~~~~~~~~g~~~~~~l~~~~~~l~~~ 206 (273)
T 2xed_A 134 AGALVEGLRALDAQRVALVTP---YMRPLAEKVVAYLEAEGFTI---SDWRA-LEVADNTEVGCIPGEQVMAAARSLDLS 206 (273)
T ss_dssp HHHHHHHHHHTTCCEEEEEEC---SCHHHHHHHHHHHHHTTCEE---EEEEE-CCCCBHHHHHTCCHHHHHHHHHHSCCT
T ss_pred HHHHHHHHHHcCCCeEEEEcC---ChhhhHHHHHHHHHHCCCEE---ecccc-CCCccchhhcccCHHHHHHHHHHHhhC
Confidence 355566667778899999963 55555667788888888543 11111 1111 0223355566666667
Q ss_pred cCeEEEEE-eChhh
Q psy17441 177 QARVYLMY-ASKQD 189 (458)
Q Consensus 177 ~~~viil~-~~~~~ 189 (458)
++++||+. |..-.
T Consensus 207 gadaIvLg~CT~l~ 220 (273)
T 2xed_A 207 EVDALVISCAVQMP 220 (273)
T ss_dssp TCSEEEEESSSSSC
T ss_pred CCCEEEEcCCCCcc
Confidence 89999999 77644
No 141
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=85.06 E-value=17 Score=31.10 Aligned_cols=85 Identities=7% Similarity=0.062 Sum_probs=56.9
Q ss_pred CCCchhHHHHHHHHHHhcCCeEEEEEEecCc-chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHh
Q psy17441 97 VPPYSHQADVWVELLKHFNYMKVIFIHSSDT-DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKN 175 (458)
Q Consensus 97 ~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~-~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~ 175 (458)
..+..+..+++... +.++ ++++++.-.+. .+ .+.+.+.+.- .+.. ..+ .+.++....++++++
T Consensus 77 ~~s~~Dil~al~~a-~~~~-~kIavvg~~~~~~~---~~~~~~ll~~---------~i~~-~~~-~~~~e~~~~i~~l~~ 140 (196)
T 2q5c_A 77 KVTRFDTMRAVYNA-KRFG-NELALIAYKHSIVD---KHEIEAMLGV---------KIKE-FLF-SSEDEITTLISKVKT 140 (196)
T ss_dssp CCCHHHHHHHHHHH-GGGC-SEEEEEEESSCSSC---HHHHHHHHTC---------EEEE-EEE-CSGGGHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHH-HhhC-CcEEEEeCcchhhH---HHHHHHHhCC---------ceEE-EEe-CCHHHHHHHHHHHHH
Confidence 34555666776665 4444 48999876553 34 5667777763 2221 223 356788999999999
Q ss_pred ccCeEEEEEeChhhHHHHHHHHHhcCCc
Q psy17441 176 AQARVYLMYASKQDAEIIFKDAQYLNMT 203 (458)
Q Consensus 176 ~~~~viil~~~~~~~~~il~~a~~~g~~ 203 (458)
.+.++|+-. ....+.|+++|+.
T Consensus 141 ~G~~vvVG~------~~~~~~A~~~Gl~ 162 (196)
T 2q5c_A 141 ENIKIVVSG------KTVTDEAIKQGLY 162 (196)
T ss_dssp TTCCEEEEC------HHHHHHHHHTTCE
T ss_pred CCCeEEECC------HHHHHHHHHcCCc
Confidence 999998864 2346778899987
No 142
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=84.86 E-value=2.4 Score=37.75 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=52.0
Q ss_pred hcccceeEEeeeccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhch--hhHHHHHHHHHc----CCCCHHHHHH
Q psy17441 381 SYTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQV--ELSNMYRTMEAN----NYDTAEDAIA 454 (458)
Q Consensus 381 ~yta~l~s~lt~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~gi~ 454 (458)
.|-..=.++++-. ..+|++++||. ....+++|++.+++...+|.+.. .+.++|+.|+.. .+++.+++++
T Consensus 105 py~~~~~~~~~~~--~~~i~~~~dL~---g~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
T 3g3k_A 105 PFMTLGISILYRK--GTPIDSADDLA---KQTKIEYGAVEDGATMTFFKRSKISTYDKMWAFMSSRRQSVLVKSNEEGIQ 179 (259)
T ss_dssp CSEEECEEEEEES--SSSCCSHHHHH---TCSSSEEEEETTSHHHHHHHHCCSHHHHHHHHHHHHTHHHHEESSHHHHHH
T ss_pred eeeeCCEEEEEeC--CccccCHHHhc---cCCCceEEEecCcHHHHHHhhccchhHHHHHHHHHhcCCCcccCCHHHHHH
Confidence 3333333444433 34699999997 34467899999999999998864 377788877543 4799999999
Q ss_pred Hhh
Q psy17441 455 DVK 457 (458)
Q Consensus 455 ~v~ 457 (458)
+|.
T Consensus 180 ~l~ 182 (259)
T 3g3k_A 180 RVL 182 (259)
T ss_dssp HHH
T ss_pred HHH
Confidence 885
No 143
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=82.83 E-value=14 Score=32.24 Aligned_cols=79 Identities=14% Similarity=0.011 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC-------CCcccHHHHHHHHHhc
Q psy17441 104 ADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE-------PGLTTFKDQLYEMKNA 176 (458)
Q Consensus 104 ~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~-------~~~~d~~~~l~~ik~~ 176 (458)
..++++.++..|-+||+++.. |+......+++.+++.|+.+ ..+.. .... .+...+.+.++++.+.
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt~---~~~~~~~~~~~~l~~~G~~v---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGTP---YIKERTLEEVEWWRNKGFEI---VGYDG-LGKIRGIDISNTPIFTIYRLVKRHLNE 168 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEES---SCHHHHHHHHHHHHTTTCEE---EEEEE-CCCCSHHHHHTCCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHcCCCeEEEEeC---CchHHHHHHHHHHHhCCcEE---ecccC-CCCCCcchhhccCHHHHHHHHHHHhcc
Confidence 566667777788899999963 55555667778888888443 11111 1111 0223455666666666
Q ss_pred --cCeEEEEEeChhh
Q psy17441 177 --QARVYLMYASKQD 189 (458)
Q Consensus 177 --~~~viil~~~~~~ 189 (458)
++++|++.|..-.
T Consensus 169 ~~gadaIvLgCT~l~ 183 (223)
T 2dgd_A 169 VLKADAVYIACTALS 183 (223)
T ss_dssp HTTSSEEEECCTTSC
T ss_pred cCCCCEEEEeCCccc
Confidence 8999999887644
No 144
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=82.04 E-value=35 Score=32.27 Aligned_cols=150 Identities=9% Similarity=-0.024 Sum_probs=86.2
Q ss_pred HHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhccc-CCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHH-
Q psy17441 34 LSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFY-HIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELL- 111 (458)
Q Consensus 34 ~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~-~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll- 111 (458)
....+.+.++++..||+ .... ...++..++..+ ++|++-..... ..++-..++++ ..++.-++-.+
T Consensus 76 ~~~l~~l~~~g~d~Ii~--~g~~--~~~~~~~vA~~~Pdv~fv~id~~~---~~~Nv~sv~~~-----~~eg~ylaG~~A 143 (356)
T 3s99_A 76 ERSIKRIARAGNKLIFT--TSFG--YMDPTVKVAKKFPDVKFEHATGYK---TADNMSAYNAR-----FYEGRYVQGVIA 143 (356)
T ss_dssp HHHHHHHHHTTCSEEEE--CSGG--GHHHHHHHHTTCTTSEEEEESCCC---CBTTEEEEEEC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEE--CCHH--HHHHHHHHHHHCCCCEEEEEeccc---cCCcEEEEEec-----hhHHHHHHHHHH
Confidence 44566677889999998 4322 456777787776 78887654321 11221123333 33444444332
Q ss_pred -HhcCCeEEEEEEecC-cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC-CCcccHHHHHHHHHhccCeEEEEEeChh
Q psy17441 112 -KHFNYMKVIFIHSSD-TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE-PGLTTFKDQLYEMKNAQARVYLMYASKQ 188 (458)
Q Consensus 112 -~~~~w~~v~ii~~~d-~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~-~~~~d~~~~l~~ik~~~~~viil~~~~~ 188 (458)
..-+-++|++|...+ +.-......+...+++.+..+ ++.....-+ .+...-.+..+.+.+.++++|+......
T Consensus 144 ~~~tk~~kIGfVgg~~~p~v~~~~~GF~~G~k~~np~i----~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~ 219 (356)
T 3s99_A 144 AKMSKKGIAGYIGSVPVPEVVQGINSFMLGAQSVNPDF----RVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST 219 (356)
T ss_dssp HHHCSSCEEEEEECCCCHHHHHHHHHHHHHHHTTCTTC----EEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS
T ss_pred HHhcCCCEEEEECCCccHHHHHHHHHHHHHHHHHCCCC----EEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch
Confidence 111247999998644 233456788888888876443 222211111 1222334556666677899888766543
Q ss_pred hHHHHHHHHHhcCC
Q psy17441 189 DAEIIFKDAQYLNM 202 (458)
Q Consensus 189 ~~~~il~~a~~~g~ 202 (458)
..+++|++.|.
T Consensus 220 ---Gv~~aa~e~Gv 230 (356)
T 3s99_A 220 ---AAIQVAHDRGI 230 (356)
T ss_dssp ---HHHHHHHHTTC
T ss_pred ---HHHHHHHHcCC
Confidence 57899999874
No 145
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=78.74 E-value=19 Score=27.23 Aligned_cols=104 Identities=14% Similarity=0.193 Sum_probs=68.2
Q ss_pred eeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHH
Q psy17441 93 FLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYE 172 (458)
Q Consensus 93 ~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ 172 (458)
+|-...++....+-++.-++.-| -++.++|+|.+-. ...+.+ +.+++.|+.| .+. .+..|++.-+++
T Consensus 4 ifvvfssdpeilkeivreikrqg-vrvvllysdqdek-rrrerl-eefekqgvdv---------rtv-edkedfrenire 70 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDEK-RRRERL-EEFEKQGVDV---------RTV-EDKEDFRENIRE 70 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCHH-HHHHHH-HHHHTTTCEE---------EEC-CSHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchHH-HHHHHH-HHHHHcCCce---------eee-ccHHHHHHHHHH
Confidence 34445677777788888888888 5788888876532 223444 4466777222 222 367899999999
Q ss_pred HHh--ccCeEEEEEeCh--hhHHHHHHHHHhcCCcccceEEEeec
Q psy17441 173 MKN--AQARVYLMYASK--QDAEIIFKDAQYLNMTETGYVWIVTE 213 (458)
Q Consensus 173 ik~--~~~~viil~~~~--~~~~~il~~a~~~g~~~~~~~wi~t~ 213 (458)
|.+ .+-+++++.... +-...++.+|++.|.- ++++-+
T Consensus 71 iwerypqldvvvivttddkewikdfieeakergve----vfvvyn 111 (162)
T 2l82_A 71 IWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVE----VFVVYN 111 (162)
T ss_dssp HHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCE----EEEEEE
T ss_pred HHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcE----EEEEec
Confidence 876 445565554333 3478899999999974 555544
No 146
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=76.78 E-value=8.8 Score=34.94 Aligned_cols=81 Identities=11% Similarity=-0.036 Sum_probs=54.5
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChh-hHHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQ-DAEII 193 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~-~~~~i 193 (458)
++++++..+ ++|.......+++.+++.|. .+........+.....+.++.+.+.++|.||+..... .....
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 78 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNV------TVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDT 78 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTC------EEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCC------EEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHH
Confidence 578888755 46788889999999999882 2222111122344456677777888999999876443 34567
Q ss_pred HHHHHhcCCc
Q psy17441 194 FKDAQYLNMT 203 (458)
Q Consensus 194 l~~a~~~g~~ 203 (458)
++++.+.|+.
T Consensus 79 ~~~~~~~~iP 88 (305)
T 3g1w_A 79 INKAVDAGIP 88 (305)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHCCCc
Confidence 8888888764
No 147
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=76.56 E-value=11 Score=34.48 Aligned_cols=80 Identities=13% Similarity=0.039 Sum_probs=55.7
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhh-HHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQD-AEII 193 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~-~~~i 193 (458)
++|+++..+ ++|.......+++.+++.|. .+... ....+.......++.+.+.+++.||+...... ....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 75 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGA------KVFVQ-SANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNV 75 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSC------EEEEE-ECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCC------EEEEE-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHH
Confidence 578888865 67888999999999999883 22211 12223444567778888889999998876543 3567
Q ss_pred HHHHHhcCCc
Q psy17441 194 FKDAQYLNMT 203 (458)
Q Consensus 194 l~~a~~~g~~ 203 (458)
++++.+.|+.
T Consensus 76 ~~~~~~~~iP 85 (313)
T 3m9w_A 76 VKEAKQEGIK 85 (313)
T ss_dssp HHHHHTTTCE
T ss_pred HHHHHHCCCe
Confidence 8888877753
No 148
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=75.83 E-value=15 Score=34.07 Aligned_cols=85 Identities=7% Similarity=-0.019 Sum_probs=54.5
Q ss_pred HHhcCCeEEEEEEec----CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeC
Q psy17441 111 LKHFNYMKVIFIHSS----DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYAS 186 (458)
Q Consensus 111 l~~~~w~~v~ii~~~----d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~ 186 (458)
++.-.-+.++++..+ ++|.......+++.+++.|. .+.. .....+.......++.+.+.+.|.||+...
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 56 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGR------QLLL-ADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp ----CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTC------EEEE-EECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred hhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCC------EEEE-EeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 344445789999865 45778889999999999883 2221 112223334455777888889999999765
Q ss_pred hhhHHHHHHHHHhcCC
Q psy17441 187 KQDAEIIFKDAQYLNM 202 (458)
Q Consensus 187 ~~~~~~il~~a~~~g~ 202 (458)
......+.+.+.+.++
T Consensus 129 ~~~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 129 FLSVDEIDDIIDAHSQ 144 (338)
T ss_dssp SSCHHHHHHHHHHCSS
T ss_pred CCChHHHHHHHHcCCC
Confidence 5444556666666664
No 149
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=74.28 E-value=6.6 Score=37.82 Aligned_cols=90 Identities=8% Similarity=0.087 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEE
Q psy17441 105 DVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMY 184 (458)
Q Consensus 105 ~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~ 184 (458)
..+.++++.+|.+++.++++..-...+..+.+.+.+++.|+.+ ..+. ...-.+..+++.+.++.+++.++|.||-.
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~---~~~~-~v~~~p~~~~v~~~~~~~~~~~~D~IIav 95 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINS---AVYD-GVMPNPTVTAVLEGLKILKDNNSDFVISL 95 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEE---EEEE-EECSSCBHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeE---EEEC-CccCCCCHHHHHHHHHHHHhcCcCEEEEe
Confidence 4456777889999999999765433346889999999988433 1111 11122355677888888888999999887
Q ss_pred eChh--hHHHHHHHHH
Q psy17441 185 ASKQ--DAEIIFKDAQ 198 (458)
Q Consensus 185 ~~~~--~~~~il~~a~ 198 (458)
+-+. |+..++....
T Consensus 96 GGGsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 96 GGGSPHDCAKAIALVA 111 (383)
T ss_dssp ESHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 6663 4455544433
No 150
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=73.86 E-value=20 Score=32.31 Aligned_cols=85 Identities=4% Similarity=-0.066 Sum_probs=56.5
Q ss_pred CCeEEEEEEec---CcchhHHHHHHHHhhhcc-CCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChh-h
Q psy17441 115 NYMKVIFIHSS---DTDGRALLGRFQTTSQNQ-EDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQ-D 189 (458)
Q Consensus 115 ~w~~v~ii~~~---d~~g~~~~~~l~~~l~~~-gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~-~ 189 (458)
+-++|+++..+ +.|.......+++.+++. |.. +.+.....-..+.......++.+.+.+++.||+..... .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 82 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFN----ISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQY 82 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGC----EEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGG
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCC----eEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHH
Confidence 44678888754 458888899999999987 632 22222211122334456677888888999999886654 3
Q ss_pred HHHHHHHHHhcCCc
Q psy17441 190 AEIIFKDAQYLNMT 203 (458)
Q Consensus 190 ~~~il~~a~~~g~~ 203 (458)
....++++.+.|+.
T Consensus 83 ~~~~~~~~~~~~iP 96 (304)
T 3gbv_A 83 TKGFTDALNELGIP 96 (304)
T ss_dssp THHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCe
Confidence 46677888877764
No 151
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=73.74 E-value=3.4 Score=35.67 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=38.1
Q ss_pred eEEeeeccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 387 AAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 387 ~s~lt~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
..+++......+|++++||+ +.++|+..++....+++.. ..+...+.+.++++++|.
T Consensus 96 ~~~~~~~~~~~~i~~~~dL~------g~~v~~~~g~~~~~~l~~~--------~~~~~~~~~~~~~~~~l~ 152 (233)
T 1ii5_A 96 IGLLIPGTATPLFRSVGDLK------NKEVAVVRDTTAVDWANFY--------QADVRETNNLTAAITLLQ 152 (233)
T ss_dssp EEEEEEGGGTTTCSSGGGGT------TCEEEEETTSHHHHHHHHT--------TCEEEEESSHHHHHHHHH
T ss_pred eEEEEECCCCCCCCCHHHhC------CCeEEEECCccHHHHHHHc--------CCCeEEcCCHHHHHHHHH
Confidence 34444444334899999997 7899999999999988763 122223556666666554
No 152
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=72.73 E-value=22 Score=31.91 Aligned_cols=80 Identities=4% Similarity=-0.102 Sum_probs=55.9
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh-hhHHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK-QDAEII 193 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~-~~~~~i 193 (458)
++|+++..+ +.|.......+++.+++.|. .+... ....+.......++.+.+.+++.||+.... ......
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 78 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGG------TAIAL-DAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPW 78 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTC------EEEEE-ECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCC------EEEEE-cCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHH
Confidence 578888864 45777889999999999883 22211 122234445677788888899999987654 345667
Q ss_pred HHHHHhcCCc
Q psy17441 194 FKDAQYLNMT 203 (458)
Q Consensus 194 l~~a~~~g~~ 203 (458)
++++.+.|+.
T Consensus 79 ~~~~~~~~iP 88 (291)
T 3l49_A 79 LQKINDAGIP 88 (291)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHCCCc
Confidence 8888888764
No 153
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=72.38 E-value=20 Score=31.99 Aligned_cols=78 Identities=8% Similarity=0.005 Sum_probs=52.1
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIF 194 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il 194 (458)
+.|+++..+ +.|.......+++.+++.|. .+.. .....+.......++.+.+.+++.||+..... ...+
T Consensus 8 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~ 78 (276)
T 3jy6_A 8 KLIAVIVANIDDYFSTELFKGISSILESRGY------IGVL-FDANADIEREKTLLRAIGSRGFDGLILQSFSN--PQTV 78 (276)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHTTTC------EEEE-EECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHCCC------EEEE-EeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHH
Confidence 578888765 45777888889999988872 2221 11222333445667777788899998887665 5667
Q ss_pred HHHHhcCCc
Q psy17441 195 KDAQYLNMT 203 (458)
Q Consensus 195 ~~a~~~g~~ 203 (458)
+.+.+.|+.
T Consensus 79 ~~l~~~~iP 87 (276)
T 3jy6_A 79 QEILHQQMP 87 (276)
T ss_dssp HHHHTTSSC
T ss_pred HHHHHCCCC
Confidence 777777764
No 154
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=71.41 E-value=52 Score=28.80 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=56.2
Q ss_pred CCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhc
Q psy17441 97 VPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNA 176 (458)
Q Consensus 97 ~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~ 176 (458)
-.+..+..+++... +.++ ++++++.-.+.. ...+.+.+.+.- .+.. ..+ .+.++....++++++.
T Consensus 89 ~vs~~Dil~aL~~a-~~~~-~kIavVg~~~~~--~~~~~i~~ll~~---------~i~~-~~~-~~~ee~~~~i~~l~~~ 153 (225)
T 2pju_A 89 KPSGYDVLQFLAKA-GKLT-SSIGVVTYQETI--PALVAFQKTFNL---------RLDQ-RSY-ITEEDARGQINELKAN 153 (225)
T ss_dssp CCCHHHHHHHHHHT-TCTT-SCEEEEEESSCC--HHHHHHHHHHTC---------CEEE-EEE-SSHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHH-HhhC-CcEEEEeCchhh--hHHHHHHHHhCC---------ceEE-EEe-CCHHHHHHHHHHHHHC
Confidence 34555566666665 4444 589999766532 225667777753 1221 223 3567889999999999
Q ss_pred cCeEEEEEeChhhHHHHHHHHHhcCCc
Q psy17441 177 QARVYLMYASKQDAEIIFKDAQYLNMT 203 (458)
Q Consensus 177 ~~~viil~~~~~~~~~il~~a~~~g~~ 203 (458)
+.++|+-. ....+.|+++|+.
T Consensus 154 G~~vVVG~------~~~~~~A~~~Gl~ 174 (225)
T 2pju_A 154 GTEAVVGA------GLITDLAEEAGMT 174 (225)
T ss_dssp TCCEEEES------HHHHHHHHHTTSE
T ss_pred CCCEEECC------HHHHHHHHHcCCc
Confidence 99998863 2346778899986
No 155
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=71.29 E-value=20 Score=33.42 Aligned_cols=81 Identities=12% Similarity=0.066 Sum_probs=55.1
Q ss_pred CeEEEEEEec--C-cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHh--ccCeEEEEEeChhhH
Q psy17441 116 YMKVIFIHSS--D-TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKN--AQARVYLMYASKQDA 190 (458)
Q Consensus 116 w~~v~ii~~~--d-~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~--~~~~viil~~~~~~~ 190 (458)
-.+|+++..+ + .|.......+++.+++.|. .+... ....+.......++++.+ .++|.||+.......
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~------~~~~~-~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~ 75 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGL------DLRIL-YAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVA 75 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTC------EEEEE-ECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCC------eEEEE-ECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhH
Confidence 3678999865 2 6888899999999999883 22211 122233334556667666 489999997655556
Q ss_pred HHHHHHHHhcCCc
Q psy17441 191 EIIFKDAQYLNMT 203 (458)
Q Consensus 191 ~~il~~a~~~g~~ 203 (458)
..+++.+.+.|+.
T Consensus 76 ~~~~~~~~~~giP 88 (350)
T 3h75_A 76 PQILRLSQGSGIK 88 (350)
T ss_dssp HHHHHHHTTSCCE
T ss_pred HHHHHHHHhCCCc
Confidence 7788888887764
No 156
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=70.65 E-value=4 Score=36.30 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=41.6
Q ss_pred eEEeeeccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 387 AAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 387 ~s~lt~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
..+++...-..+|++++||+ +.++|+..|+....++++.-.-..+....+...+++.++++++|.
T Consensus 117 ~~~~~~~~~~~~i~~~~dL~------g~~v~v~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 181 (259)
T 4dz1_A 117 FYLVSMANHKITLNNLNELN------KYSIGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLK 181 (259)
T ss_dssp EEEEEETTSCCCCCSGGGGG------GSCEEEETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHH
T ss_pred eEEEEEcCCCCCCCCHHHhC------CCEEEEeCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHH
Confidence 34445455556899999997 788999999999988876310000000022234678888887765
No 157
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=70.47 E-value=2.8 Score=36.87 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=44.8
Q ss_pred cccceeEEeeeccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 382 YTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 382 yta~l~s~lt~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
|...-.++++.+....+|++++||. +.+.++|+..|+....++++.. ...+...+++.++++++|.
T Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~dL~----~~g~~i~v~~g~~~~~~l~~~~------~~~~~~~~~~~~~~~~~L~ 153 (245)
T 3k4u_A 88 YIVVGQSLLVKKGLEKGVKSYKDLD----KPELTLVTKFGVSAEYAAKRLF------KNAKLKTYDTEAEAVQEVL 153 (245)
T ss_dssp SEEECEEEEEETTTTTTCCSGGGGC----CSSCEEEEETTSHHHHHHHHHC------SSSEEEEESSHHHHHHHHH
T ss_pred hheeceEEEEECCcccccCCHHHhc----cCCcEEEEeCCcHHHHHHHhhC------CcCCEEEeCCHHHHHHHHH
Confidence 3333445555555557899999996 4578999999999998887631 0122224677777777765
No 158
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=69.97 E-value=3.4 Score=35.71 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=37.1
Q ss_pred ccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 393 ERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 393 ~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
.+-.+.|++++||+ +.++|+..++....++++.. ...+...+++.++++++|.
T Consensus 103 ~~~~~~~~~~~dL~------g~~i~~~~g~~~~~~l~~~~------~~~~~~~~~~~~~~~~~l~ 155 (234)
T 3h7m_A 103 RRDSPPAAGLEDLR------GRKVALHRDGIMHEYLAERG------YGKDLVLTPTPADALRLLA 155 (234)
T ss_dssp ESSSCCCSSGGGGT------TSCEEEETTSHHHHHHHTTT------CGGGEEEESSHHHHHHHHH
T ss_pred ECCCCCCCCHHHhC------CCEEEEEeCchHHHHHHhcC------CCceEEEeCCHHHHHHHHH
Confidence 33334699999997 67899999999999888751 0122334667777777665
No 159
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=68.14 E-value=11 Score=33.40 Aligned_cols=80 Identities=5% Similarity=0.045 Sum_probs=53.3
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIF 194 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il 194 (458)
+.|+++..+ +.|.......+++.+++.|. .+.. .....+.......++.+.+.+++.||+..........+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 75 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGY------QLLI-ASSDDQPDSERQLQQLFRARRCDALFVASCLPPEDDSY 75 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTC------EEEE-EECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCC------EEEE-EeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHH
Confidence 568888765 45788889999999999883 2221 11222334456677788888999998876542334566
Q ss_pred HHHHhcCCc
Q psy17441 195 KDAQYLNMT 203 (458)
Q Consensus 195 ~~a~~~g~~ 203 (458)
+++.+.|+.
T Consensus 76 ~~~~~~~iP 84 (272)
T 3o74_A 76 RELQDKGLP 84 (272)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCC
Confidence 777777764
No 160
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=67.88 E-value=2.9 Score=37.52 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=37.8
Q ss_pred eccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 392 LERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 392 ~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
+.+-.+.|++++||. +.++|+..|+....++++.. ...+...+++.++++++|+
T Consensus 124 ~~~~~~~i~~~~dL~------g~~i~v~~g~~~~~~l~~~~------~~~~~~~~~~~~~~l~~L~ 177 (267)
T 3mpk_A 124 TRQDPDAPVDADHLD------GRTVALVRNSAAIPLLQRRY------PQAKVVTADNPSEAMLMVA 177 (267)
T ss_dssp EESSTTSCSSGGGCT------TCEEEEETTCTHHHHHHHHC------TTSEEEEESSHHHHHHHHH
T ss_pred EECCCCCCCCHHHHC------CCEEEEeCCchhHHHHHHhC------CCcEEEEeCCHHHHHHHHH
Confidence 334346789999997 78999999999999887531 1122224677777777764
No 161
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=67.27 E-value=23 Score=31.75 Aligned_cols=82 Identities=9% Similarity=0.097 Sum_probs=55.2
Q ss_pred CCeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhh-HH
Q psy17441 115 NYMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQD-AE 191 (458)
Q Consensus 115 ~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~-~~ 191 (458)
+-++|+++..+ +.|.......+++.+++.|.. +.. .....+.......++.+.+.+++.||+...... ..
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~------~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~ 79 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYE------ALV-ATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIG 79 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCE------EEE-EECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCE------EEE-ECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHH
Confidence 34678888865 457888899999999998832 221 112223444567778888889999998765433 34
Q ss_pred HHHHHHHhcCCc
Q psy17441 192 IIFKDAQYLNMT 203 (458)
Q Consensus 192 ~il~~a~~~g~~ 203 (458)
..++++.+.|+.
T Consensus 80 ~~~~~~~~~~iP 91 (293)
T 3l6u_A 80 SAIEEAKKAGIP 91 (293)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 677888888764
No 162
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=67.05 E-value=3 Score=37.30 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=42.0
Q ss_pred eEEeeeccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchh-hHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 387 AAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVE-LSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 387 ~s~lt~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
.++++.+.. +|++++||. +.++|+..|+....++....+ .+..+...+...+++.++++++|.
T Consensus 109 ~~~~~~~~~--~i~~~~dL~------g~~i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 172 (268)
T 3hv1_A 109 QVLVTKKSS--GIDSVAGMA------GKTLGAQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLN 172 (268)
T ss_dssp EEEEEEGGG--CCCSSGGGT------TCCEEEETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHH
T ss_pred eEEEEECCC--CCCCHHHhC------CCEEEEEeCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHH
Confidence 344444332 899999997 789999999999999886522 122122233334778888888775
No 163
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=66.02 E-value=4.3 Score=35.39 Aligned_cols=48 Identities=10% Similarity=0.221 Sum_probs=35.2
Q ss_pred CCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 397 TKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 397 ~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
.+|++++||. +.++|+..|+....+++... ..+...+++.++++++|.
T Consensus 108 ~~i~~~~dL~------g~~i~v~~g~~~~~~l~~~~-------~~~~~~~~~~~~~~~~L~ 155 (242)
T 3del_B 108 ENKHPLPLTQ------YRSVAVQTGTYQEAYLQSLS-------EVHIRSFDSTLEVLMEVM 155 (242)
T ss_dssp CCSCCCCGGG------SSCEEEETTSHHHHHHHHST-------TCCEEEESSHHHHHHHHH
T ss_pred CCCCCHHHhC------CCEEEEEcCcHHHHHHHhCC-------CceEEEECCHHHHHHHHH
Confidence 7899999997 67899999999999888621 122223566777776664
No 164
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=65.98 E-value=2.6 Score=37.18 Aligned_cols=58 Identities=17% Similarity=0.292 Sum_probs=38.4
Q ss_pred eEEeeeccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 387 AAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 387 ~s~lt~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
.++++ .+-.+.|++++||. +.++|+..++....++++.- ...+...+++.++++++|.
T Consensus 111 ~~~~~-~~~~~~i~~~~dL~------g~~i~v~~g~~~~~~l~~~~------~~~~~~~~~~~~~~~~~L~ 168 (249)
T 4f3p_A 111 LAAMV-QANNTTIKSIDDLN------GKVIAAKTGTATIDWIKAHL------KPKEIRQFPNIDQAYLALE 168 (249)
T ss_dssp EEEEE-ETTCCSCCSSGGGT------TSEEEEETTSHHHHHHHHHC------CCSEEEEESSHHHHHHHHH
T ss_pred EEEEE-ECCCCCcCChHHhC------CCEEEEeCCChHHHHHHhcC------CCceEEEcCCHHHHHHHHH
Confidence 33443 33344799999997 78999999999998887631 0111223567777777665
No 165
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=65.91 E-value=25 Score=29.41 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=42.3
Q ss_pred eEEEEEEecCcchh---HHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhc-cCeEEEEEe
Q psy17441 117 MKVIFIHSSDTDGR---ALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNA-QARVYLMYA 185 (458)
Q Consensus 117 ~~v~ii~~~d~~g~---~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~-~~~viil~~ 185 (458)
-+++||...|+-|+ .....+.+.+++.| ..+.....++.+.+.+.+.+++..+. ++|+||..+
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G------~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittG 77 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAG------HHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITG 77 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTT------CEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEES
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCC------CeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 47888887776553 34567888888877 33344444565666777777776654 589888874
No 166
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=65.73 E-value=27 Score=32.02 Aligned_cols=80 Identities=9% Similarity=-0.015 Sum_probs=54.8
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChh-hHHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQ-DAEII 193 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~-~~~~i 193 (458)
++|+++..+ +.|.......+++.+++.|.. +.... ...+.......++.+.+.+++.||+..... .....
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~------~~~~~-~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~ 76 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYK------TDLQY-ADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDV 76 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCE------EEEEE-CTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCE------EEEee-CCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHH
Confidence 578888865 568888999999999998832 22111 222333445677777778899999876543 34667
Q ss_pred HHHHHhcCCc
Q psy17441 194 FKDAQYLNMT 203 (458)
Q Consensus 194 l~~a~~~g~~ 203 (458)
++++.+.|+.
T Consensus 77 ~~~~~~~giP 86 (330)
T 3uug_A 77 LKQAGEQGIK 86 (330)
T ss_dssp HHHHHHTTCE
T ss_pred HHHHHHCCCC
Confidence 7888887763
No 167
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=65.68 E-value=3.8 Score=36.37 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=39.2
Q ss_pred eEEeeeccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 387 AAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 387 ~s~lt~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
..+++.+.-..+|++++||+ +.++|+..++....+++..- ...+...+++.++++++|.
T Consensus 130 ~~~~~~~~~~~~i~~~~dL~------g~~i~~~~g~~~~~~l~~~~------~~~~~~~~~~~~~~~~~l~ 188 (269)
T 4i62_A 130 NKLIVKKSDLATYQSVNDLA------QKKVGAQKGSIQETMAKDLL------QNSSLVSLPKNGNLITDLK 188 (269)
T ss_dssp EEEEEEGGGTTTCSSGGGGC-------CEEEEETTSHHHHHHHHHC------TTSEEEEESCHHHHHHHHH
T ss_pred eEEEEECCccccccCHHHhC------CCeEEEecCchHHHHHHHhC------CCCcEEecCCHHHHHHHHH
Confidence 34555555457899999997 78999999999988887631 0111223566777776664
No 168
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=65.48 E-value=2.7 Score=36.75 Aligned_cols=61 Identities=7% Similarity=0.102 Sum_probs=41.3
Q ss_pred eEEeeeccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 387 AAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 387 ~s~lt~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
..+++...-..+|++++||. +.+.++|+..|+....+++... ...+...+++.++++++|.
T Consensus 103 ~~~~~~~~~~~~i~~~~dL~----~~g~~v~~~~g~~~~~~l~~~~------~~~~~~~~~~~~~~~~~l~ 163 (239)
T 3kbr_A 103 KTPITLCSEEARFQTLEQID----QPGVTAIVNPGGTNEKFARANL------KKARILVHPDNVTIFQQIV 163 (239)
T ss_dssp EEEEEEGGGGGGGSSHHHHS----STTCEEEECTTSHHHHHHHHHC------SSSEEEECCCTTTHHHHHH
T ss_pred cEEEEECCcccccCCHHHhc----CCCcEEEEcCCCcHHHHHHHhC------CCCceEEeCCHHHHHHHHH
Confidence 34555555456899999996 5578999999999998887631 0112223666777777664
No 169
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=64.93 E-value=6.1 Score=33.79 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=33.3
Q ss_pred CCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 397 TKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 397 ~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
.+|++++||+ +.++|+..++....++++. .++...+.+.+++++.|.
T Consensus 102 ~~~~~~~dL~------g~~i~~~~g~~~~~~l~~~--------~~~~~~~~~~~~~~~~l~ 148 (228)
T 2pyy_A 102 GDIRSIDDLP------GKVVATTAGSTAATYLREH--------HISVLEVPKIEEAYKALQ 148 (228)
T ss_dssp CCCCSGGGCT------TCEEEEETTSHHHHHHHHT--------TCEEEEESSHHHHHHHHH
T ss_pred CCcCCHHHcC------CCeEEEEcCcHHHHHHHHc--------CCceEecCCHHHHHHHHH
Confidence 4799999997 7889999999999888764 112223555666665554
No 170
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=64.60 E-value=13 Score=35.66 Aligned_cols=86 Identities=14% Similarity=0.077 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCeEEEEEEecCcchh--HHHHHHHHhhhccCCcceeeEEEEEEEEeC--CCcccHHHHHHHHHhccCeEE
Q psy17441 106 VWVELLKHFNYMKVIFIHSSDTDGR--ALLGRFQTTSQNQEDDVEIKVQVEAVIEFE--PGLTTFKDQLYEMKNAQARVY 181 (458)
Q Consensus 106 ai~~ll~~~~w~~v~ii~~~d~~g~--~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~--~~~~d~~~~l~~ik~~~~~vi 181 (458)
.+.++++.+|.+++.++++...... +..+.+.+.+++.|+.+ .....+. +..+.+.+.++.+++.++|.|
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~------~~~~~~~~~p~~~~v~~~~~~~~~~~~d~I 96 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEV------AIFDGVEPNPKDTNVRDGLAVFRREQCDII 96 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEE------EEECCCCSSCBHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeE------EEECCccCCCCHHHHHHHHHHHHhcCCCEE
Confidence 3566778888899999987765544 46888999998877322 1111121 245567788888888999999
Q ss_pred EEEeCh--hhHHHHHHHH
Q psy17441 182 LMYASK--QDAEIIFKDA 197 (458)
Q Consensus 182 il~~~~--~~~~~il~~a 197 (458)
|-.+-+ -|+..++...
T Consensus 97 IavGGGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 97 VTVGGGSPHDCGKGIGIA 114 (387)
T ss_dssp EEEESHHHHHHHHHHHHH
T ss_pred EEeCCcchhhHHHHHHHH
Confidence 977654 3455555443
No 171
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=64.40 E-value=31 Score=31.10 Aligned_cols=79 Identities=10% Similarity=0.102 Sum_probs=54.6
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChh-hHHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQ-DAEII 193 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~-~~~~i 193 (458)
.+++++..+ ++|.....+.+++.+++.| ..+.... ..+.....+.++.+.+.+++.||+..... .....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g------~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~ 74 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLG------FEVIKIA--VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAI 74 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHT------EEEEEEE--CCSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcC------CEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHH
Confidence 468888755 4688888999999999988 3322211 12444456677788888999999886543 44566
Q ss_pred HHHHHhcCCc
Q psy17441 194 FKDAQYLNMT 203 (458)
Q Consensus 194 l~~a~~~g~~ 203 (458)
++++.+.|+.
T Consensus 75 ~~~~~~~~iP 84 (306)
T 8abp_A 75 VAKARGYDMK 84 (306)
T ss_dssp HHHHHHTTCE
T ss_pred HHHHHHCCCc
Confidence 7888888763
No 172
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=64.19 E-value=28 Score=31.38 Aligned_cols=81 Identities=9% Similarity=0.002 Sum_probs=51.1
Q ss_pred eEEEEEEe--cCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChh-hHHHH
Q psy17441 117 MKVIFIHS--SDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQ-DAEII 193 (458)
Q Consensus 117 ~~v~ii~~--~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~-~~~~i 193 (458)
.+|+++.. +++|.......+++.+++.| ..+........+.......++++.+.+.+.||+..... .....
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~ 78 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFN------LNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPV 78 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTT------EEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcC------CEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHH
Confidence 56888864 35688888999999999887 33221111111233345567777778899998876543 33456
Q ss_pred HHHHHhcCCc
Q psy17441 194 FKDAQYLNMT 203 (458)
Q Consensus 194 l~~a~~~g~~ 203 (458)
++.+.+.|+.
T Consensus 79 ~~~~~~~~ip 88 (303)
T 3d02_A 79 FKKARDAGIV 88 (303)
T ss_dssp HHHHHHTTCE
T ss_pred HHHHHHCCCe
Confidence 6777776653
No 173
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=63.64 E-value=33 Score=30.70 Aligned_cols=80 Identities=5% Similarity=-0.036 Sum_probs=55.1
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChh----hH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQ----DA 190 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~----~~ 190 (458)
+.|+++..+ +.|.......+++.+++.|. .+.. .....+.......++.+.+.+.+.||+..... ..
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 88 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGY------SMLL-TSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPN 88 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTC------EEEE-EECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTT
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCC------EEEE-EeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCc
Confidence 789999865 45788899999999999883 2221 11222344456677888888999999876432 34
Q ss_pred HHHHHHHHhcCCc
Q psy17441 191 EIIFKDAQYLNMT 203 (458)
Q Consensus 191 ~~il~~a~~~g~~ 203 (458)
...++++.+.|+.
T Consensus 89 ~~~~~~~~~~~iP 101 (298)
T 3tb6_A 89 IGYYLNLEKNGIP 101 (298)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCC
Confidence 4667777777764
No 174
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=62.90 E-value=41 Score=24.64 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=26.1
Q ss_pred ceeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcch
Q psy17441 92 SFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDG 129 (458)
Q Consensus 92 ~~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g 129 (458)
+-.|++.+.......+-++++.|+-+-|.++.+|..|.
T Consensus 27 fkvrtvrspqelkdsieelvkkynativvvvvddkewa 64 (134)
T 2l69_A 27 FKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWA 64 (134)
T ss_dssp CEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHH
T ss_pred ceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHH
Confidence 44677777777777777888888877666666555443
No 175
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=62.77 E-value=20 Score=31.34 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEee
Q psy17441 31 LTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGI 77 (458)
Q Consensus 31 ~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~ 77 (458)
......++.|.+.|+.+|+- + |.+ ....+..+-+..++|+++.
T Consensus 60 ~~l~~~~~~L~~~g~d~ivi--a-CnT-a~~~~~~l~~~~~iPvi~i 102 (226)
T 2zsk_A 60 KILINAAKALERAGAELIAF--A-ANT-PHLVFDDVQREVNVPMVSI 102 (226)
T ss_dssp HHHHHHHHHHHHHTCSEEEE--S-SSG-GGGGHHHHHHHCSSCBCCH
T ss_pred HHHHHHHHHHHHcCCCEEEE--C-CCc-HHHHHHHHHHhCCCCEecc
Confidence 33445566676778988886 3 442 3333566666778887763
No 176
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=62.26 E-value=30 Score=31.95 Aligned_cols=85 Identities=11% Similarity=-0.084 Sum_probs=52.7
Q ss_pred HHhcCCeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChh
Q psy17441 111 LKHFNYMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQ 188 (458)
Q Consensus 111 l~~~~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~ 188 (458)
++.-.-+.|+++..+ +.|.......+++.+++.|. .+.. .....+.......++.+.+.+.|.||+.....
T Consensus 57 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 129 (339)
T 3h5o_A 57 LASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGY------QMLI-GNSHYDAGQELQLLRAYLQHRPDGVLITGLSH 129 (339)
T ss_dssp ------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTC------EEEE-EECTTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred hhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCC------EEEE-EeCCCChHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 333344679988755 45788899999999999883 2211 11222334456677788888999999876543
Q ss_pred hHHHHHHHHHhcCCc
Q psy17441 189 DAEIIFKDAQYLNMT 203 (458)
Q Consensus 189 ~~~~il~~a~~~g~~ 203 (458)
.. ..++.+.+.++.
T Consensus 130 ~~-~~~~~l~~~~iP 143 (339)
T 3h5o_A 130 AE-PFERILSQHALP 143 (339)
T ss_dssp CT-THHHHHHHTTCC
T ss_pred CH-HHHHHHhcCCCC
Confidence 32 456666666654
No 177
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=62.18 E-value=5.4 Score=35.12 Aligned_cols=65 Identities=17% Similarity=0.297 Sum_probs=43.9
Q ss_pred hcccceeEEeeeccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 381 SYTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 381 ~yta~l~s~lt~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
.|-.+-.++++...-...+++++||. +.++|+..|+..+.++++.- ...+...+++.++++++|.
T Consensus 97 py~~~~~~~~v~~~~~~~~~~~~dl~------g~~i~v~~g~~~~~~l~~~~------~~~~i~~~~~~~~~~~~l~ 161 (243)
T 4h5g_A 97 PYYENKISFLVHKADVEKYKDLTSLE------SANIAAQKGTVPESMVKEQL------PKAQLTSLTNMGEAVNELQ 161 (243)
T ss_dssp CSBCCCEEEEEEGGGTTTCCSHHHHH------TSEEEEETTSHHHHHHHHHC------TTSEEEEESCHHHHHHHHH
T ss_pred ccccCcccccccccccccccccccCC------CCEEEecCCcHHHHHHHHhc------ccceeEEeCCHHHHHHHHH
Confidence 34334445666666667899999998 78999999999988887631 0111224667777776664
No 178
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=62.10 E-value=51 Score=31.84 Aligned_cols=93 Identities=9% Similarity=-0.047 Sum_probs=60.6
Q ss_pred eEEEEEEecCcchh--HHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh------h
Q psy17441 117 MKVIFIHSSDTDGR--ALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK------Q 188 (458)
Q Consensus 117 ~~v~ii~~~d~~g~--~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~------~ 188 (458)
++|.|+|..- ||. ..++.+.+.+.+.|+. .......+....+...++.++.+ ++.+++.++. +
T Consensus 266 ~~v~I~Y~S~-yGnTe~mA~~ia~gl~~~Gv~------~~~~~~~d~~~~~~s~i~~~i~~--~~~ivlGspT~~~~~~p 336 (410)
T 4dik_A 266 GKVTVIYDSM-YGFVENVMKKAIDSLKEKGFT------PVVYKFSDEERPAISEILKDIPD--SEALIFGVSTYEAEIHP 336 (410)
T ss_dssp TEEEEEEECS-SSHHHHHHHHHHHHHHHTTCE------EEEEEECSSCCCCHHHHHHHSTT--CSEEEEEECCTTSSSCH
T ss_pred cceeeEEecc-cChHHHHHHHHHHHHHhcCCc------eEEEEeccCCCCCHHHHHHHHHh--CCeEEEEeCCcCCcCCH
Confidence 4799999643 554 5688999999998832 22222234455677777776664 6788887665 3
Q ss_pred hHHHHHHHHHhcCCcccceEEEeecccccc
Q psy17441 189 DAEIIFKDAQYLNMTETGYVWIVTEQALTA 218 (458)
Q Consensus 189 ~~~~il~~a~~~g~~~~~~~wi~t~~~~~~ 218 (458)
....++.........++.-..+.+-+|...
T Consensus 337 ~~~~~l~~l~~~~~~~K~~~~FGSyGWsg~ 366 (410)
T 4dik_A 337 LMRFTLLEIIDKANYEKPVLVFGVHGWAPS 366 (410)
T ss_dssp HHHHHHHHHHHHCCCCCEEEEEEECCCCCT
T ss_pred HHHHHHHHHHhcccCCCEEEEEECCCCCcH
Confidence 445667777777776654556677777643
No 179
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=62.00 E-value=10 Score=34.37 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=46.5
Q ss_pred hhcccceeEEeeeccCCCCCCChhhhhhcCCC---CceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHh
Q psy17441 380 ASYTANLAAFLVLERPKTKLTGINDARLRNTM---ENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADV 456 (458)
Q Consensus 380 ~~yta~l~s~lt~~~~~~~i~~~~dL~~~~~~---~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v 456 (458)
..|..+-.++++-. ..++++++||.....+ .++++|++.+++...++.+. +.+++..+....+.+.++++++|
T Consensus 127 ~p~~~~~~~~~~~~--~~~~~~~~dl~~~~~~~l~~~~~vg~v~~~s~~~~l~~~--~~~~~~~i~~~~~~~~~~~l~~l 202 (284)
T 2a5s_A 127 VPFVETGISVMVSR--GTQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNN--YPYMHQYMTRFNQRGVEDALVSL 202 (284)
T ss_dssp CCCEEECEEEEEET--TCCCCSTTSHHHHSGGGSSSCCCEECCTTSHHHHHHHTT--CHHHHHHHGGGCCSSHHHHHHHH
T ss_pred cCchhcCEEEEEEC--CcccccccccccCChhHcCCCceEEEEeCCchHHHHHHH--HHHHHHHHHhccCCCHHHHHHHH
Confidence 34444444444433 3468888888621100 15689998888878777653 55555555544458999999988
Q ss_pred hC
Q psy17441 457 KI 458 (458)
Q Consensus 457 ~~ 458 (458)
++
T Consensus 203 ~~ 204 (284)
T 2a5s_A 203 KT 204 (284)
T ss_dssp HT
T ss_pred Hc
Confidence 63
No 180
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=61.77 E-value=13 Score=32.54 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=34.0
Q ss_pred hcccceeEEeeeccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhh
Q psy17441 381 SYTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRR 430 (458)
Q Consensus 381 ~yta~l~s~lt~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~ 430 (458)
.|-.+....+++.+-...|++++||. +.++|+..++....+++.
T Consensus 92 p~~~~~~~~~~~~~~~~~~~~~~dL~------g~~v~v~~gs~~~~~~~~ 135 (243)
T 4gvo_A 92 VAYNNFPLQLTVLDSNNSINSTKDLA------GKRVITSATSNGALVLKK 135 (243)
T ss_dssp SCCEECCEEEEEETTCCSCSSGGGGT------TCEEEECTTCHHHHHHHH
T ss_pred hhcccccceEEEeccccccCchHHhc------CCeEEEecCchHHHHHHH
Confidence 34444555666666678899999997 789999999988887765
No 181
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=61.28 E-value=26 Score=32.59 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=47.1
Q ss_pred CCeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCC-cccHHHHHHHHHhccCeEEEEEeChhhHH
Q psy17441 115 NYMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPG-LTTFKDQLYEMKNAQARVYLMYASKQDAE 191 (458)
Q Consensus 115 ~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~-~~d~~~~l~~ik~~~~~viil~~~~~~~~ 191 (458)
.-..++++..+ +.|.......+++.+++.|.. +.. .....+ .......++.+.+.+.|.||+........
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~------~~~-~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~ 132 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGAS------VVV-SMVERSGVEACKTAVHNLLAQRVSGLIINYPLDDQD 132 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE------EEE-EECCSSSHHHHHHHHHHHHTTTCSCEEEESCCCHHH
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCE------EEE-EeCCCCcHHHHHHHHHHHHHCCCCEEEEecCCCChh
Confidence 34678888865 457778889999999998832 211 111111 23345567778788899998874332222
Q ss_pred HHHHHHHhcCC
Q psy17441 192 IIFKDAQYLNM 202 (458)
Q Consensus 192 ~il~~a~~~g~ 202 (458)
.+...+.+.|+
T Consensus 133 ~~~~~~~~~~i 143 (349)
T 1jye_A 133 AIAVEAACTNV 143 (349)
T ss_dssp HHHHHHHTTTS
T ss_pred HHHHHHhhCCC
Confidence 23334444443
No 182
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=61.23 E-value=29 Score=31.40 Aligned_cols=86 Identities=8% Similarity=0.023 Sum_probs=52.2
Q ss_pred HHHhcCCeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh
Q psy17441 110 LLKHFNYMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK 187 (458)
Q Consensus 110 ll~~~~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~ 187 (458)
-++.-+-+.|+++..+ +.|.......+++.+++.|..+ .. .....+.......++.+.+.+.+.||+....
T Consensus 9 ~L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~------~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 81 (303)
T 3kke_A 9 ALRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDV------LL-GQIDAPPRGTQQLSRLVSEGRVDGVLLQRRE 81 (303)
T ss_dssp --------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCE------EE-EECCSTTHHHHHHHHHHHSCSSSEEEECCCT
T ss_pred HHhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEE------EE-EeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3344444678888765 4578889999999999988432 11 1122233445677788888899999987654
Q ss_pred hhHHHHHHHHHhcCCc
Q psy17441 188 QDAEIIFKDAQYLNMT 203 (458)
Q Consensus 188 ~~~~~il~~a~~~g~~ 203 (458)
......++.+.+ |+.
T Consensus 82 ~~~~~~~~~l~~-~iP 96 (303)
T 3kke_A 82 DFDDDMLAAVLE-GVP 96 (303)
T ss_dssp TCCHHHHHHHHT-TSC
T ss_pred CCcHHHHHHHhC-CCC
Confidence 442225666666 653
No 183
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=61.22 E-value=22 Score=32.13 Aligned_cols=80 Identities=9% Similarity=0.000 Sum_probs=53.5
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC--CCcccHHHHHHHHHhccCeEEEEEeCh-hhHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE--PGLTTFKDQLYEMKNAQARVYLMYASK-QDAE 191 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~--~~~~d~~~~l~~ik~~~~~viil~~~~-~~~~ 191 (458)
.+++++..+ +.|.......+++.+++.|. .+.... .. .+.....+.++++.+.+++.||+.... ....
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 76 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKV------DLQILA-PPGANDVPKQVQFIESALATYPSGIATTIPSDTAFS 76 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTC------EEEEEC-CSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCc------EEEEEC-CCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH
Confidence 467888765 56888899999999999883 222111 11 133344567777788899999886543 3335
Q ss_pred HHHHHHHhcCCc
Q psy17441 192 IIFKDAQYLNMT 203 (458)
Q Consensus 192 ~il~~a~~~g~~ 203 (458)
..++++.+.|+.
T Consensus 77 ~~~~~~~~~giP 88 (297)
T 3rot_A 77 KSLQRANKLNIP 88 (297)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHCCCC
Confidence 677888888864
No 184
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=61.14 E-value=14 Score=35.03 Aligned_cols=81 Identities=6% Similarity=0.031 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEe
Q psy17441 106 VWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYA 185 (458)
Q Consensus 106 ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~ 185 (458)
.+.+.++.+|.+|+.++++.... ...+.+.+.+++.+ ..+-....-.+..+.+.+.++.+++.++|.||-.+
T Consensus 24 ~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~------~~v~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG 95 (353)
T 3hl0_A 24 DVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLA------AGVFSEAAMHTPVEVTKTAVEAYRAAGADCVVSLG 95 (353)
T ss_dssp GHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGE------EEEECCCCTTCBHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCC------cEEecCcCCCCcHHHHHHHHHHHhccCCCEEEEeC
Confidence 46678888999999999876543 35788888888744 22110011112344567777788889999998876
Q ss_pred Chh--hHHHHH
Q psy17441 186 SKQ--DAEIIF 194 (458)
Q Consensus 186 ~~~--~~~~il 194 (458)
-+. |+..++
T Consensus 96 GGs~iD~aK~i 106 (353)
T 3hl0_A 96 GGSTTGLGKAI 106 (353)
T ss_dssp SHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 664 344444
No 185
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=60.92 E-value=49 Score=30.76 Aligned_cols=85 Identities=8% Similarity=-0.100 Sum_probs=52.9
Q ss_pred HHhcCCeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChh
Q psy17441 111 LKHFNYMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQ 188 (458)
Q Consensus 111 l~~~~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~ 188 (458)
++.-.-+.|+++..+ +.|.......+++.+++.|. .+.. .....+.......++.+.+.+.+.||+.....
T Consensus 65 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~ 137 (355)
T 3e3m_A 65 LTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGL------QLLL-GYTAYSPEREEQLVETMLRRRPEAMVLSYDGH 137 (355)
T ss_dssp ------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTC------EEEE-EECTTCHHHHHHHHHHHHHTCCSEEEEECSCC
T ss_pred hhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCC------EEEE-EeCCCChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 333344679998765 45777889999999999883 2211 11222334445677778888999999876554
Q ss_pred hHHHHHHHHHhcCCc
Q psy17441 189 DAEIIFKDAQYLNMT 203 (458)
Q Consensus 189 ~~~~il~~a~~~g~~ 203 (458)
. ...++.+.+.|+.
T Consensus 138 ~-~~~~~~l~~~~iP 151 (355)
T 3e3m_A 138 T-EQTIRLLQRASIP 151 (355)
T ss_dssp C-HHHHHHHHHCCSC
T ss_pred C-HHHHHHHHhCCCC
Confidence 3 3456667777764
No 186
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=60.82 E-value=33 Score=30.77 Aligned_cols=83 Identities=8% Similarity=0.061 Sum_probs=49.9
Q ss_pred HHhcCCeEEEEEEe-cCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhh
Q psy17441 111 LKHFNYMKVIFIHS-SDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQD 189 (458)
Q Consensus 111 l~~~~w~~v~ii~~-~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~ 189 (458)
++.-+-+.|+++.+ ++.|.......+++.+++.|.. +.... ...+. +....++.+.+.+.|.||+......
T Consensus 7 L~~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~------~~~~~-~~~~~-~~~~~~~~l~~~~vdgiIi~~~~~~ 78 (289)
T 3k9c_A 7 LRQASSRLLGVVFELQQPFHGDLVEQIYAAATRRGYD------VMLSA-VAPSR-AEKVAVQALMRERCEAAILLGTRFD 78 (289)
T ss_dssp ------CEEEEEEETTCHHHHHHHHHHHHHHHHTTCE------EEEEE-EBTTB-CHHHHHHHHTTTTEEEEEEETCCCC
T ss_pred hhcCCCCEEEEEEecCCchHHHHHHHHHHHHHHCCCE------EEEEe-CCCCH-HHHHHHHHHHhCCCCEEEEECCCCC
Confidence 33334467888872 2457778899999999998832 22111 12222 3667788888889999998865544
Q ss_pred HHHHHHHHHhcCCc
Q psy17441 190 AEIIFKDAQYLNMT 203 (458)
Q Consensus 190 ~~~il~~a~~~g~~ 203 (458)
. ..++.+.+ |+.
T Consensus 79 ~-~~~~~~~~-~iP 90 (289)
T 3k9c_A 79 T-DELGALAD-RVP 90 (289)
T ss_dssp H-HHHHHHHT-TSC
T ss_pred H-HHHHHHHc-CCC
Confidence 3 45555554 543
No 187
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=60.57 E-value=7.6 Score=33.15 Aligned_cols=54 Identities=15% Similarity=0.294 Sum_probs=37.3
Q ss_pred eccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHH-HHHcCCCCHHHHHHHhh
Q psy17441 392 LERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRT-MEANNYDTAEDAIADVK 457 (458)
Q Consensus 392 ~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gi~~v~ 457 (458)
+.+-.+.+++++||. +.++|+..++....++++.. .. .+...+.+.++++++|.
T Consensus 94 ~~~~~~~~~~~~dL~------g~~v~~~~g~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~l~ 148 (227)
T 3tql_A 94 ADKNTPLTLSKQGLK------GKIIGVQGGTTFDSYLQDSF------GNSITIQRYPSEEDALMDLT 148 (227)
T ss_dssp EETTSCCCCSTTTTT------TCEEEEETTSHHHHHHHHHH------GGGSEEEEESSHHHHHHHHT
T ss_pred EeCCCCCCCCHHHhC------CCEEEEEecccHHHHHHHhc------cccceEEEcCCHHHHHHHHH
Confidence 333334448999997 78999999999998887641 01 22334777888887765
No 188
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=60.33 E-value=14 Score=35.48 Aligned_cols=87 Identities=13% Similarity=0.095 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC--CCcccHHHHHHHHHhccCeEEEE
Q psy17441 106 VWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE--PGLTTFKDQLYEMKNAQARVYLM 183 (458)
Q Consensus 106 ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~--~~~~d~~~~l~~ik~~~~~viil 183 (458)
.+.++++.++.+++.++++......+..+.+.+.+++.|+.+ .....+. +..+.+.+.++.+++.++|.||-
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~------~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIa 94 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAW------AIYDGVVPNPTITVVKEGLGVFQNSGADYLIA 94 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEE------EEECBCCSSCBHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeE------EEECCccCCCCHHHHHHHHHHHHhcCcCEEEE
Confidence 356677778889999998655433346888999998877322 1111122 24556778888888899999997
Q ss_pred EeCh--hhHHHHHHHHH
Q psy17441 184 YASK--QDAEIIFKDAQ 198 (458)
Q Consensus 184 ~~~~--~~~~~il~~a~ 198 (458)
.+-+ -|+..++....
T Consensus 95 vGGGsv~D~aK~iA~~~ 111 (386)
T 1rrm_A 95 IGGGSPQDTCKAIGIIS 111 (386)
T ss_dssp EESHHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHH
Confidence 7654 35555554443
No 189
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=60.05 E-value=18 Score=34.74 Aligned_cols=73 Identities=5% Similarity=-0.009 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC--CCcccHHHHHHHHHhccCeEEEE
Q psy17441 106 VWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE--PGLTTFKDQLYEMKNAQARVYLM 183 (458)
Q Consensus 106 ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~--~~~~d~~~~l~~ik~~~~~viil 183 (458)
.+.+.++.+| +|+.+|++...+.. ..+.+.+.+++ |+ .+.+ ..++ +..+++.+.++.+++.++|+||-
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~~-~~~~v~~~L~~-g~------~~~~-~~~~~~p~~~~v~~~~~~~~~~~~d~IIa 112 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFDA-LSERIGKSCGD-SL------DIRF-ERFGGECCTSEIERVRKVAIEHGSDILVG 112 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHHH-HHHHC-------CC------EEEE-EECCSSCSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHcC-CEEEEEECchHHHH-HHHHHHHHHHc-CC------CeEE-EEcCCCCCHHHHHHHHHHHhhcCCCEEEE
Confidence 3456788889 99999988776543 67888888887 73 2212 1222 24556777778888889999988
Q ss_pred EeChh
Q psy17441 184 YASKQ 188 (458)
Q Consensus 184 ~~~~~ 188 (458)
.+-+.
T Consensus 113 vGGGs 117 (387)
T 3uhj_A 113 VGGGK 117 (387)
T ss_dssp ESSHH
T ss_pred eCCcH
Confidence 87664
No 190
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=59.88 E-value=23 Score=33.46 Aligned_cols=97 Identities=7% Similarity=0.030 Sum_probs=59.1
Q ss_pred HHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeC
Q psy17441 107 WVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYAS 186 (458)
Q Consensus 107 i~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~ 186 (458)
+.++++.++.+++.++++...+. ...+.+.+.+++.|+.+ . .....-.+..+++.+. +.+++.+++.||-.+.
T Consensus 25 l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~----~-~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGG 97 (354)
T 3ce9_A 25 IGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEI----E-AVETVKNIDFDEIGTN-AFKIPAEVDALIGIGG 97 (354)
T ss_dssp HHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEE----E-EEEEECCCBHHHHHHH-HTTSCTTCCEEEEEES
T ss_pred HHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeE----E-EEecCCCCCHHHHHHH-HHhhhcCCCEEEEECC
Confidence 56678888889999999876543 56788899998887432 1 1121112234455566 6667788999997765
Q ss_pred h--hhHHHHHHHHHhcCCcccceEEEeeccc
Q psy17441 187 K--QDAEIIFKDAQYLNMTETGYVWIVTEQA 215 (458)
Q Consensus 187 ~--~~~~~il~~a~~~g~~~~~~~wi~t~~~ 215 (458)
+ -|+..++... .++. ++-|-|..-
T Consensus 98 Gsv~D~aK~vA~~--~~~p---~i~IPTT~~ 123 (354)
T 3ce9_A 98 GKAIDAVKYMAFL--RKLP---FISVPTSTS 123 (354)
T ss_dssp HHHHHHHHHHHHH--HTCC---EEEEESCCS
T ss_pred hHHHHHHHHHHhh--cCCC---EEEecCccc
Confidence 5 3445544422 2332 555555543
No 191
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=59.87 E-value=7.1 Score=33.32 Aligned_cols=50 Identities=12% Similarity=0.289 Sum_probs=33.8
Q ss_pred CCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 396 KTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 396 ~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
.+.|++++||+ +.++|+..++....++++.- ...+...+++.+++++.|.
T Consensus 98 ~~~i~~~~dL~------g~~i~~~~g~~~~~~l~~~~------~~~~~~~~~~~~~~~~~l~ 147 (226)
T 1wdn_A 98 NNDVKSVKDLD------GKVVAVKSGTGSVDYAKANI------KTKDLRQFPNIDNAYMELG 147 (226)
T ss_dssp CCSCSSSTTTT------TCEEEEETTSHHHHHHHHHC------CCSEEEEESSHHHHHHHHH
T ss_pred CCCCCCHHHhC------CCEEEEEcCCcHHHHHHHhC------CCceEEEeCCHHHHHHHHH
Confidence 33699999997 78899999999988887630 0111123556666666654
No 192
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=59.79 E-value=35 Score=31.78 Aligned_cols=79 Identities=14% Similarity=0.037 Sum_probs=50.2
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIF 194 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il 194 (458)
+.|+++..+ +.|.......+++.+++.|..+ .. .....+.......++.+.+.++|.||+...... ...+
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~------~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~ 138 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLAT------II-TNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQL 138 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCE------EE-EECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEE------EE-EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHH
Confidence 568888854 5678888999999999988332 11 111222333456677788888999988765443 2455
Q ss_pred HHHHhcCCc
Q psy17441 195 KDAQYLNMT 203 (458)
Q Consensus 195 ~~a~~~g~~ 203 (458)
+.+.+.|+.
T Consensus 139 ~~l~~~~iP 147 (348)
T 3bil_A 139 EDLQKQGMP 147 (348)
T ss_dssp HHHHHC-CC
T ss_pred HHHHhCCCC
Confidence 666666653
No 193
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=59.76 E-value=14 Score=33.90 Aligned_cols=80 Identities=14% Similarity=-0.032 Sum_probs=51.0
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhh-HHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQD-AEII 193 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~-~~~i 193 (458)
++|+++..+ +.|.......+++.+++.|+ .+.....-..+.....+.++.+.+.+++.|++...... ....
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~------~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~ 77 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGI------DVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPA 77 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTC------EEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCC------EEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHH
Confidence 578888643 56788888999999988772 22110001112233445677777788999888755433 3567
Q ss_pred HHHHHhcCC
Q psy17441 194 FKDAQYLNM 202 (458)
Q Consensus 194 l~~a~~~g~ 202 (458)
++++.+.|+
T Consensus 78 ~~~a~~~gi 86 (316)
T 1tjy_A 78 LKRAMQRGV 86 (316)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHCcC
Confidence 788887775
No 194
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=59.75 E-value=40 Score=31.05 Aligned_cols=81 Identities=6% Similarity=0.016 Sum_probs=50.1
Q ss_pred eEEEEEEec---CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC--CCcccHHHHHHHHHhccCeEEEEEeChhhHH
Q psy17441 117 MKVIFIHSS---DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE--PGLTTFKDQLYEMKNAQARVYLMYASKQDAE 191 (458)
Q Consensus 117 ~~v~ii~~~---d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~--~~~~d~~~~l~~ik~~~~~viil~~~~~~~~ 191 (458)
..|+++..+ ++|.......+++.+++.|..+ .+.. .... .+.......++.+.+.+++.||+........
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~----~~~~-~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 118 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINY----QLNQ-VFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHR 118 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCE----EEEE-EECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeE----EEEe-cCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHH
Confidence 468888765 5688888999999999988332 1111 1111 1223344667777778899999843333234
Q ss_pred HHHHHHHhcCC
Q psy17441 192 IIFKDAQYLNM 202 (458)
Q Consensus 192 ~il~~a~~~g~ 202 (458)
..++++.+.|.
T Consensus 119 ~~~~~~~~~~i 129 (342)
T 1jx6_A 119 KFVEHVLDSTN 129 (342)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHHcCC
Confidence 55666766664
No 195
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=59.68 E-value=6.3 Score=34.84 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=36.0
Q ss_pred ccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 393 ERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 393 ~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
.+-..+|++++||+ +.++|+..++....++.... ..+...+++.++++++|.
T Consensus 125 ~~~~~~i~~~~dL~------g~~i~~~~g~~~~~~l~~~~-------~~~~~~~~~~~~~~~~l~ 176 (268)
T 3qax_A 125 SKRSLETPVLPLTQ------YSSVAVQTGTYQEHYLLSQP-------GICVRSFDSTLEVIMEVR 176 (268)
T ss_dssp EETTSCSCCCCGGG------SSCEEEETTSHHHHHHHTST-------TCCEEEESCHHHHHHHHH
T ss_pred ECCCCCCCCHHHhC------CCEEEEecCcHHHHHHHhCC-------CceEEecCCHHHHHHHHH
Confidence 33336899999997 67899999999999888631 122223556666666654
No 196
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=59.60 E-value=42 Score=29.93 Aligned_cols=80 Identities=9% Similarity=0.013 Sum_probs=51.8
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhh-HHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQD-AEII 193 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~-~~~i 193 (458)
++|+++..+ +.|.......+++.+++.|. .+.. .....+.....+.++.+.+.+++.||+...... ....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~ 75 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGY------EATI-FDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIAN 75 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTC------EEEE-EECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCC------EEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHH
Confidence 468888764 56888889999999999883 2221 111222333456677777788999988754433 3356
Q ss_pred HHHHHhcCCc
Q psy17441 194 FKDAQYLNMT 203 (458)
Q Consensus 194 l~~a~~~g~~ 203 (458)
++++.+.|+.
T Consensus 76 ~~~~~~~~iP 85 (290)
T 2fn9_A 76 VKRAKEAGIP 85 (290)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHCCCe
Confidence 6777776653
No 197
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=59.39 E-value=14 Score=35.09 Aligned_cols=95 Identities=9% Similarity=0.003 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEe-CCCcccHHHHHHHHHhccCeEEEEE
Q psy17441 106 VWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEF-EPGLTTFKDQLYEMKNAQARVYLMY 184 (458)
Q Consensus 106 ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~-~~~~~d~~~~l~~ik~~~~~viil~ 184 (458)
.+.+.++.+|.+|+.+|++....+ ..+.+.+.+++.+ ..+ +.... .+..+.+.+.++.+++.++|.||-.
T Consensus 26 ~l~~~l~~~g~~r~liVtd~~~~~--~~~~v~~~L~~~~------~~~-f~~v~~~p~~~~v~~~~~~~~~~~~D~IIav 96 (358)
T 3jzd_A 26 QVAAEVERLGAKRALVLCTPNQQA--EAERIADLLGPLS------AGV-YAGAVMHVPIESARDATARAREAGADCAVAV 96 (358)
T ss_dssp GHHHHHHHTTCSCEEEECCGGGHH--HHHHHHHHHGGGE------EEE-ECCCCTTCBHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHHhccCC------EEE-ecCCcCCCCHHHHHHHHHHhhccCCCEEEEe
Confidence 456788899999999998776443 4678888888643 211 11111 1234456777788888999999988
Q ss_pred eChh--hHHHHHHHHHhcCCcccceEEEeecc
Q psy17441 185 ASKQ--DAEIIFKDAQYLNMTETGYVWIVTEQ 214 (458)
Q Consensus 185 ~~~~--~~~~il~~a~~~g~~~~~~~wi~t~~ 214 (458)
+-+. |+..++.. ..++. ++-|-|..
T Consensus 97 GGGsviD~aK~iA~--~~~~p---~i~IPTT~ 123 (358)
T 3jzd_A 97 GGGSTTGLGKAIAL--ETGMP---IVAIPTTY 123 (358)
T ss_dssp ESHHHHHHHHHHHH--HHCCC---EEEEECSS
T ss_pred CCcHHHHHHHHHHh--ccCCC---EEEEeCCc
Confidence 7664 34444433 23332 55555553
No 198
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=59.38 E-value=40 Score=30.27 Aligned_cols=79 Identities=5% Similarity=0.051 Sum_probs=52.7
Q ss_pred CeEEEEEEe------cCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhh
Q psy17441 116 YMKVIFIHS------SDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQD 189 (458)
Q Consensus 116 w~~v~ii~~------~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~ 189 (458)
-+.|+++.. .+.|.......+++.+++.|..+ ..... . +.......++.+.+.+.|.||+......
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~------~~~~~-~-~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 77 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDL------LLIPD-E-PGEKYQSLIHLVETRRVDALIVAHTQPE 77 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEE------EEEEE-C-TTCCCHHHHHHHHHTCCSEEEECSCCSS
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEE------EEEeC-C-ChhhHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 357888886 35678888999999999988322 21111 2 2344566777788889999998765433
Q ss_pred HHHHHHHHHhcCCc
Q psy17441 190 AEIIFKDAQYLNMT 203 (458)
Q Consensus 190 ~~~il~~a~~~g~~ 203 (458)
. ..++.+.+.|+.
T Consensus 78 ~-~~~~~l~~~~iP 90 (294)
T 3qk7_A 78 D-FRLQYLQKQNFP 90 (294)
T ss_dssp C-HHHHHHHHTTCC
T ss_pred h-HHHHHHHhCCCC
Confidence 2 456677777764
No 199
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=57.97 E-value=50 Score=29.54 Aligned_cols=79 Identities=8% Similarity=-0.047 Sum_probs=50.9
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIF 194 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il 194 (458)
+.|+++..+ ++|.......+++.+++.|. .+.. .....+.....+.++.+.+.++|.||+...... ...+
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~ 88 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKY------NIIL-SNSDQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHV 88 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTC------EEEE-EECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCC------EEEE-EeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHH
Confidence 578888865 56788889999999999883 2221 111223333456677788889999998764322 3345
Q ss_pred HHHHhcCCc
Q psy17441 195 KDAQYLNMT 203 (458)
Q Consensus 195 ~~a~~~g~~ 203 (458)
+++.+.|+.
T Consensus 89 ~~l~~~~iP 97 (289)
T 2fep_A 89 AEFKRSPVP 97 (289)
T ss_dssp HHHHHSSSC
T ss_pred HHHHhcCCC
Confidence 666666653
No 200
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=57.91 E-value=23 Score=34.17 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCeEEEEEEecCcchh-HHHHHHHHhhhccCCcceeeEEEEEEE-EeCCCcccHHHHHHHHHhccCeEEEE
Q psy17441 106 VWVELLKHFNYMKVIFIHSSDTDGR-ALLGRFQTTSQNQEDDVEIKVQVEAVI-EFEPGLTTFKDQLYEMKNAQARVYLM 183 (458)
Q Consensus 106 ai~~ll~~~~w~~v~ii~~~d~~g~-~~~~~l~~~l~~~gi~v~~~~~v~~~~-~~~~~~~d~~~~l~~ik~~~~~viil 183 (458)
.+.+.++.+|.+++.+|+++..... +..+.+.+.+++.|+.+ ..+.. .-.+..+.+.+.++.+++.++|.||-
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~-----~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 107 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEW-----VEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLG 107 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEE-----EEECCCCSSCBHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeE-----EEecCccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4566778889899999987554333 36788889998877322 11110 01123456777888888999999997
Q ss_pred EeCh--hhHHHHHHH
Q psy17441 184 YASK--QDAEIIFKD 196 (458)
Q Consensus 184 ~~~~--~~~~~il~~ 196 (458)
.+-+ -|+..++..
T Consensus 108 vGGGsviD~AK~iA~ 122 (407)
T 1vlj_A 108 VGGGSVVDSAKAVAA 122 (407)
T ss_dssp EESHHHHHHHHHHHH
T ss_pred eCChhHHHHHHHHHH
Confidence 7654 345555444
No 201
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=57.67 E-value=23 Score=31.30 Aligned_cols=80 Identities=8% Similarity=0.003 Sum_probs=52.1
Q ss_pred EEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEE-eCCCcccHHHHHHHHHhcc-CeEEEEEeCh-hhHHH
Q psy17441 118 KVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIE-FEPGLTTFKDQLYEMKNAQ-ARVYLMYASK-QDAEI 192 (458)
Q Consensus 118 ~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~-~~~~~~d~~~~l~~ik~~~-~~viil~~~~-~~~~~ 192 (458)
+|+++..+ +.|.......+++.+++.|. .+..... -..+.....+.++.+.+.+ ++.||+.... .....
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~------~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~ 75 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGV------TLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTP 75 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTC------EEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCC------EEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHH
Confidence 57777654 56788889999999999882 2221110 0112233445677777778 9999987643 34566
Q ss_pred HHHHHHhcCCc
Q psy17441 193 IFKDAQYLNMT 203 (458)
Q Consensus 193 il~~a~~~g~~ 203 (458)
.++++.+.|+.
T Consensus 76 ~~~~~~~~~ip 86 (276)
T 3ksm_A 76 SVAQYRARNIP 86 (276)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHCCCc
Confidence 77888888864
No 202
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=57.17 E-value=24 Score=31.02 Aligned_cols=70 Identities=16% Similarity=0.306 Sum_probs=44.8
Q ss_pred cccceeEEeeeccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhch--hhHHHHHHHHHc----CCCCHHHHHHH
Q psy17441 382 YTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQV--ELSNMYRTMEAN----NYDTAEDAIAD 455 (458)
Q Consensus 382 yta~l~s~lt~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~gi~~ 455 (458)
|...-.++++-. ..+|++++||. ....+++|++.+++...+|.+.. .|.++|..++.. .+.+.++++++
T Consensus 106 ~~~~~~~~~~~~--~~~i~~~~dL~---g~~~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (263)
T 1mqi_A 106 FMSLGISIMIKK--GTPIESAEDLS---KQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVAR 180 (263)
T ss_dssp SEEECEEEEEET--TCSCCSHHHHH---TCSSSEEECBSSSHHHHHHHHCCSHHHHHHHHHHHHCSSCCCBSSHHHHHHH
T ss_pred eecccEEEEEcC--ccccCCHHHHh---cccCeeEEEEeccHHHHHHHhccchhHHHHHHHHhhCCCceecCCHHHHHHH
Confidence 333333444433 33699999997 23334588777777777776642 366777666432 47899999998
Q ss_pred h
Q psy17441 456 V 456 (458)
Q Consensus 456 v 456 (458)
|
T Consensus 181 l 181 (263)
T 1mqi_A 181 V 181 (263)
T ss_dssp H
T ss_pred H
Confidence 8
No 203
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=56.92 E-value=7.5 Score=33.36 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=33.5
Q ss_pred CCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 399 LTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 399 i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
|++++||+ +.++|+..++....++++.- ...+...+.+.++++++|.
T Consensus 104 ~~~~~dL~------g~~v~~~~g~~~~~~l~~~~------~~~~~~~~~~~~~~~~~l~ 150 (229)
T 2y7i_A 104 YHTFADLK------GKKVGLENGTTHQRYLQDKQ------QAITPVAYDSYLNAFTDLK 150 (229)
T ss_dssp CCSTGGGT------TCEEEEETTSHHHHHHHHHC------TTSEEEEESCHHHHHHHHH
T ss_pred CCCHHHHC------CCEEEEecCCcHHHHHHHhC------CCCeEEecCCHHHHHHHHH
Confidence 99999997 78899999999988887530 0122223667777777664
No 204
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=56.81 E-value=66 Score=28.27 Aligned_cols=93 Identities=4% Similarity=-0.025 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCeEEEEEEec------------CcchhHHHHHHHHhhhccCCcceeeEEEEEE-EEeCCCcccHHHHHH
Q psy17441 105 DVWVELLKHFNYMKVIFIHSS------------DTDGRALLGRFQTTSQNQEDDVEIKVQVEAV-IEFEPGLTTFKDQLY 171 (458)
Q Consensus 105 ~ai~~ll~~~~w~~v~ii~~~------------d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~-~~~~~~~~d~~~~l~ 171 (458)
...++.++..|.+.|=+.... ........+.+++.+++.|+.+ ... ........++.+.++
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i------~~~~~~~~~~~~~~~~~i~ 98 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKI------VGTGVYVAEKSSDWEKMFK 98 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEE------EEEEEECCSSTTHHHHHHH
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeE------EEEeccCCccHHHHHHHHH
Confidence 455677888999988876432 1123455789999999998543 222 222334567888888
Q ss_pred HHHhccCeEEEEEeChhhHHHHHHHHHhcCCc
Q psy17441 172 EMKNAQARVYLMYASKQDAEIIFKDAQYLNMT 203 (458)
Q Consensus 172 ~ik~~~~~viil~~~~~~~~~il~~a~~~g~~ 203 (458)
..+..+++.|++....+....+...|.+.|+.
T Consensus 99 ~A~~lGa~~v~~~~~~~~~~~l~~~a~~~gv~ 130 (262)
T 3p6l_A 99 FAKAMDLEFITCEPALSDWDLVEKLSKQYNIK 130 (262)
T ss_dssp HHHHTTCSEEEECCCGGGHHHHHHHHHHHTCE
T ss_pred HHHHcCCCEEEecCCHHHHHHHHHHHHHhCCE
Confidence 88999999999987667778888888888874
No 205
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=56.78 E-value=32 Score=30.90 Aligned_cols=85 Identities=6% Similarity=-0.029 Sum_probs=51.7
Q ss_pred HHhcCCeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChh
Q psy17441 111 LKHFNYMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQ 188 (458)
Q Consensus 111 l~~~~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~ 188 (458)
++.-.-.+|+++..+ +.|.......+++.+++.|.. +.. .....+.......++.+.+.+++.||+.....
T Consensus 15 L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~------~~~-~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 87 (293)
T 2iks_A 15 LRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQ------LLI-ACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLP 87 (293)
T ss_dssp ---CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCE------EEE-EECTTCHHHHHHHHHHHHHTTCSEEEECCSSC
T ss_pred hhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCE------EEE-EcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 333344678988764 567788899999999998832 221 11122233345667778888899998876543
Q ss_pred hHHHHHHHHHhcCC
Q psy17441 189 DAEIIFKDAQYLNM 202 (458)
Q Consensus 189 ~~~~il~~a~~~g~ 202 (458)
....+++.+.+.|+
T Consensus 88 ~~~~~~~~~~~~~i 101 (293)
T 2iks_A 88 PEHPFYQRWANDPF 101 (293)
T ss_dssp TTCHHHHTTTTSSS
T ss_pred CcHHHHHHHHhCCC
Confidence 22335555655554
No 206
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=56.76 E-value=68 Score=28.72 Aligned_cols=81 Identities=11% Similarity=0.070 Sum_probs=52.3
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhh-HHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQD-AEII 193 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~-~~~i 193 (458)
++|+++..+ +.|.......+++.+++.|. ..+.. .....+.......++.+.+.+++.||+...... ....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~ 76 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-----VQLLM-NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTV 76 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTT-----EEEEE-EECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCC-----eEEEE-ecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHH
Confidence 468888754 56788889999999999882 12211 111222333456677777888999988764433 3566
Q ss_pred HHHHHhcCCc
Q psy17441 194 FKDAQYLNMT 203 (458)
Q Consensus 194 l~~a~~~g~~ 203 (458)
++++.+.|+.
T Consensus 77 ~~~~~~~~iP 86 (309)
T 2fvy_A 77 IEKARGQNVP 86 (309)
T ss_dssp HHHHHTTTCC
T ss_pred HHHHHHCCCc
Confidence 7777776653
No 207
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=56.70 E-value=58 Score=29.90 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=44.4
Q ss_pred eEEEEEEe----cC-cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh
Q psy17441 117 MKVIFIHS----SD-TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK 187 (458)
Q Consensus 117 ~~v~ii~~----~d-~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~ 187 (458)
.+|++|++ +| .|.....+.+++.+++.|+ .+.... +.+..+..+.++.+.+.+.+.||+.+..
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~------~~~~~~--~~~~~~~~~~l~~l~~~~~dgIi~~~~~ 72 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNA------KCKYVT--ASTDAEYVPSLSAFADENMGLVVACGSF 72 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTC------EEEEEE--CCSGGGHHHHHHHHHHTTCSEEEEESTT
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCC------eEEEEe--CCCHHHHHHHHHHHHHcCCCEEEECChh
Confidence 57899986 24 5777888899999998883 222222 1234566778888888899999987643
No 208
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=56.21 E-value=18 Score=31.59 Aligned_cols=116 Identities=17% Similarity=0.181 Sum_probs=58.0
Q ss_pred HHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHHHHHHhcC
Q psy17441 36 VCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFN 115 (458)
Q Consensus 36 ~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~~ll~~~~ 115 (458)
.++.+.+.++.+|+- .|.+ . .....+-+..++|+++... +.++.....+
T Consensus 67 ~~~~l~~~g~d~ivi---aCnt-a-~~~~~l~~~~~iPvi~i~~--------------------------~~~~~a~~~~ 115 (228)
T 2eq5_A 67 LAKEFEREGVDAIII---SCAA-D-PAVEKVRKLLSIPVIGAGS--------------------------SVSALALAYG 115 (228)
T ss_dssp HHHHHHHTTCSEEEE---CSTT-C-TTHHHHHHHCSSCEEEHHH--------------------------HHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEE---eCCc-h-HHHHHHHHhCCCCEeCccH--------------------------HHHHHHHHhC
Confidence 345565678888885 3443 3 4455555667788775321 1111112345
Q ss_pred CeEEEEEEecCcchhHHHHHHHHhh-hccCCcceeeEEEEEEEEeCC--CcccHHHHHHHHHhccCeEEEEEeChh
Q psy17441 116 YMKVIFIHSSDTDGRALLGRFQTTS-QNQEDDVEIKVQVEAVIEFEP--GLTTFKDQLYEMKNAQARVYLMYASKQ 188 (458)
Q Consensus 116 w~~v~ii~~~d~~g~~~~~~l~~~l-~~~gi~v~~~~~v~~~~~~~~--~~~d~~~~l~~ik~~~~~viil~~~~~ 188 (458)
++|+++....... ..+++.+ ++.|..+... .+.....+.. ....+.+.++++.+.++|+|++.|..-
T Consensus 116 -~rigVlat~~t~~----~~~~~~~~~~~g~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~ 185 (228)
T 2eq5_A 116 -RRVGVLNLTEETP----KVIRSILGNNLIAEDHPS-GVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGM 185 (228)
T ss_dssp -SSEEEECSSSCCC----HHHHHHHGGGEEEEECCT-TCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHH
T ss_pred -CeEEEEecCcccH----HHHHHHHHHHhCccccCC-ceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 7888887654332 2345555 5544111000 0000000000 122345566666667899999988764
No 209
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=55.85 E-value=7 Score=35.02 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=39.8
Q ss_pred cccceeEEeeeccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHH--HHHhh
Q psy17441 382 YTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDA--IADVK 457 (458)
Q Consensus 382 yta~l~s~lt~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--i~~v~ 457 (458)
|...-..+++.......|++++||+ +.++|+..|+....+++... .+...+.+.+++ +++|.
T Consensus 107 ~~~~~~~l~~~~~~~~~i~~~~dL~------g~~i~v~~g~~~~~~l~~~~--------~~~~~~~~~~~~~l~~~L~ 170 (271)
T 2iee_A 107 YKYSYGTAIVRKDDLSGIKTLKDLK------GKKAAGAATTVYMEVARKYG--------AKEVIYDNATNEQYLKDVA 170 (271)
T ss_dssp SEEEEEEEEECTTTGGGCSSGGGGT------TCEEESCTTSHHHHHHHHTT--------CEEEECSSCCHHHHHHHHH
T ss_pred ceeCCeEEEEECCCCCCCCCHHHhC------CCEEEEeCCccHHHHHHHcC--------CceEEeCChhhHHHHHHHH
Confidence 3333344444444333799999997 78999999999998887531 122235666666 66653
No 210
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=55.60 E-value=8.7 Score=33.31 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=33.6
Q ss_pred CCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 398 KLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 398 ~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
+|++++||. +.++|+..|+....++.+.. . ..+...+++.++++++|.
T Consensus 101 ~~~~~~dL~------g~~i~~~~g~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~l~ 148 (237)
T 3kzg_A 101 KISTFDDLH------GKKIGVRKGTPYARQVLSEN--R----NNQVIFYELIQDMLLGLS 148 (237)
T ss_dssp SCCSGGGGT------TCEEEEETTSTHHHHHHHTC--S----SCEEEEESSHHHHHHHHH
T ss_pred CCCCHHHhC------CCEEEEecCCHHHHHHHHhC--C----CCcEEEeCCHHHHHHHHH
Confidence 399999997 78999999999777776531 0 112224667777777664
No 211
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=55.59 E-value=53 Score=30.09 Aligned_cols=83 Identities=12% Similarity=-0.025 Sum_probs=50.6
Q ss_pred HhcCCeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhh
Q psy17441 112 KHFNYMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQD 189 (458)
Q Consensus 112 ~~~~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~ 189 (458)
+.-.-..|+++..+ +.|.......+++.+++.|.. +.. .....+.......++.+.+.+.+.||+......
T Consensus 59 ~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~------~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 131 (332)
T 2o20_A 59 ASKRTTTVGVILPTITSTYFAAITRGVDDIASMYKYN------MIL-ANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLD 131 (332)
T ss_dssp ---CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCE------EEE-EECTTCHHHHHHHHHHHHHTTCSEEEECSSCCC
T ss_pred hcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCE------EEE-EECCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 33344679999864 567888899999999998832 211 111222333456677778888999998764322
Q ss_pred HHHHHHHHHhcCC
Q psy17441 190 AEIIFKDAQYLNM 202 (458)
Q Consensus 190 ~~~il~~a~~~g~ 202 (458)
...++.+.+.++
T Consensus 132 -~~~~~~l~~~~i 143 (332)
T 2o20_A 132 -EKIRTSLKNSRT 143 (332)
T ss_dssp -HHHHHHHHHHCC
T ss_pred -HHHHHHHHhCCC
Confidence 234555555554
No 212
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=54.46 E-value=72 Score=28.28 Aligned_cols=85 Identities=7% Similarity=-0.019 Sum_probs=50.1
Q ss_pred HHhcCCeEEEEEEec----CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeC
Q psy17441 111 LKHFNYMKVIFIHSS----DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYAS 186 (458)
Q Consensus 111 l~~~~w~~v~ii~~~----d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~ 186 (458)
++.-.-.+|+++..+ ++|.......+++.+++.|. .+.. .....+.......++++.+.+.+.||+...
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 86 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGR------QLLL-ADGKHSAEEERQAIQYLLDLRCDAIMIYPR 86 (296)
T ss_dssp -----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTC------EEEE-ECCTTSHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred hhcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCC------EEEE-EeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 333344679998754 45788889999999998882 2211 111222333456677777788999998765
Q ss_pred hhhHHHHHHHHHh-cCCc
Q psy17441 187 KQDAEIIFKDAQY-LNMT 203 (458)
Q Consensus 187 ~~~~~~il~~a~~-~g~~ 203 (458)
.... ..++.+.+ .|..
T Consensus 87 ~~~~-~~~~~l~~~~~iP 103 (296)
T 3brq_A 87 FLSV-DEIDDIIDAHSQP 103 (296)
T ss_dssp SSCH-HHHHHHHHTCSSC
T ss_pred CCCh-HHHHHHHhcCCCC
Confidence 4332 34566666 5653
No 213
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=53.85 E-value=94 Score=27.20 Aligned_cols=94 Identities=6% Similarity=0.015 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCCeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEE
Q psy17441 105 DVWVELLKHFNYMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYL 182 (458)
Q Consensus 105 ~ai~~ll~~~~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vii 182 (458)
...++.++..|.+.|=+.... .+......+.+++.+++.|+.+ ..+.. ........+.+.++..+..+++.|+
T Consensus 33 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i---~~~~~--~~~~~~~~~~~~i~~A~~lGa~~v~ 107 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTG---YAVGP--IYMKSEEEIDRAFDYAKRVGVKLIV 107 (257)
T ss_dssp HHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEE---EEEEE--EEECSHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeE---EEEec--cccCCHHHHHHHHHHHHHhCCCEEE
Confidence 456777888999988876532 1223455789999999999544 11111 1113455677788888889999999
Q ss_pred EEeChhhHHHHHHHHHhcCCc
Q psy17441 183 MYASKQDAEIIFKDAQYLNMT 203 (458)
Q Consensus 183 l~~~~~~~~~il~~a~~~g~~ 203 (458)
+....+....+...|.+.|+.
T Consensus 108 ~~p~~~~l~~l~~~a~~~gv~ 128 (257)
T 3lmz_A 108 GVPNYELLPYVDKKVKEYDFH 128 (257)
T ss_dssp EEECGGGHHHHHHHHHHHTCE
T ss_pred ecCCHHHHHHHHHHHHHcCCE
Confidence 887667788888888888874
No 214
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=52.98 E-value=28 Score=31.18 Aligned_cols=81 Identities=6% Similarity=-0.013 Sum_probs=53.6
Q ss_pred CCeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHHH
Q psy17441 115 NYMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEI 192 (458)
Q Consensus 115 ~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~ 192 (458)
+-+.|+++..+ +.|.......+++.+++.|. .+.. .....+.......++.+.+.+.+.||+..... ...
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~ 78 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGY------SVLL-ANTAEDIVREREAVGQFFERRVDGLILAPSEG-EHD 78 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC------EEEE-EECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCC------EEEE-EeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChH
Confidence 34678888755 45777889999999999883 2221 11222344456677788888999999876543 344
Q ss_pred HHHHHHhcCCc
Q psy17441 193 IFKDAQYLNMT 203 (458)
Q Consensus 193 il~~a~~~g~~ 203 (458)
.++.+.+.|+.
T Consensus 79 ~~~~~~~~~iP 89 (291)
T 3egc_A 79 YLRTELPKTFP 89 (291)
T ss_dssp HHHHSSCTTSC
T ss_pred HHHHhhccCCC
Confidence 56666666653
No 215
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=52.74 E-value=85 Score=28.83 Aligned_cols=79 Identities=11% Similarity=-0.049 Sum_probs=53.2
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIF 194 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il 194 (458)
+.|+++..+ +.|.......+++.+++.|.. +.. .....+.......++.+.+.+.|.||+....... ..+
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~------~~~-~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~ 140 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQ------PVV-GVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AAR 140 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSE------EEE-EECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCE------EEE-EeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHH
Confidence 468888754 568888999999999998832 211 1122233445567777888899999987654333 566
Q ss_pred HHHHhcCCc
Q psy17441 195 KDAQYLNMT 203 (458)
Q Consensus 195 ~~a~~~g~~ 203 (458)
+.+.+.|+.
T Consensus 141 ~~l~~~~iP 149 (344)
T 3kjx_A 141 AMLDAAGIP 149 (344)
T ss_dssp HHHHHCSSC
T ss_pred HHHHhCCCC
Confidence 677777764
No 216
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=52.32 E-value=14 Score=32.29 Aligned_cols=68 Identities=7% Similarity=0.021 Sum_probs=42.7
Q ss_pred cccceeEEeeeccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 382 YTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 382 yta~l~s~lt~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
|..+-..+++.+.....|++++||. .+.+.++|+..++....++++.. + ...+...+++.++++++|.
T Consensus 96 ~~~~~~~~~~~~~~~~~i~~~~dL~---~~~g~~i~~~~g~~~~~~l~~~~-~----~~~~~~~~~~~~~~~~~l~ 163 (257)
T 2q88_A 96 ILCDAEAFALKKGNPLGLKSYKDIA---DNPDAKIGAPGGGTEEKLALEAG-V----PRDRVIVVPDGQSGLKMLQ 163 (257)
T ss_dssp CCEECEEEEEETTCTTCCCBHHHHH---HCTTCCEEECTTSHHHHHHHHTT-C----CGGGEEECSSHHHHHHHHH
T ss_pred hhcCceEEEEECCCccCCCCHHHHh---ccCCceEEEECCcccHHHHHhcC-C----CCceEEEcCCHHHHHHHHH
Confidence 3333334555444334699999996 12367899999999998887641 0 0112234677777777764
No 217
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=51.99 E-value=36 Score=32.33 Aligned_cols=86 Identities=7% Similarity=0.069 Sum_probs=55.5
Q ss_pred HHHHHHHhcCCeEEEEEEecCcchh-HHHHHHHHhhhccCCcceeeEEEEEE-EEeCCCcccHHHHHHHHHhccCeEEEE
Q psy17441 106 VWVELLKHFNYMKVIFIHSSDTDGR-ALLGRFQTTSQNQEDDVEIKVQVEAV-IEFEPGLTTFKDQLYEMKNAQARVYLM 183 (458)
Q Consensus 106 ai~~ll~~~~w~~v~ii~~~d~~g~-~~~~~l~~~l~~~gi~v~~~~~v~~~-~~~~~~~~d~~~~l~~ik~~~~~viil 183 (458)
.+.++++.+| +++.+|++.+.... +..+.+.+.+++.|+.+ . .+. ..-.+..+++.+.++.+++.++|.||-
T Consensus 31 ~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~----~-~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIa 104 (371)
T 1o2d_A 31 KRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISY----E-IFDEVEENPSFDNVMKAVERYRNDSFDFVVG 104 (371)
T ss_dssp HHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEE----E-EEEEECSSCBHHHHHHHHHHHTTSCCSEEEE
T ss_pred HHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeE----E-EeCCccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 3455667778 89999998755432 36788888898877332 1 111 111234566778888888889999997
Q ss_pred EeCh--hhHHHHHHHH
Q psy17441 184 YASK--QDAEIIFKDA 197 (458)
Q Consensus 184 ~~~~--~~~~~il~~a 197 (458)
.+-+ -|+..++...
T Consensus 105 vGGGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 105 LGGGSPMDFAKAVAVL 120 (371)
T ss_dssp EESHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHH
Confidence 7654 3455555443
No 218
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=51.78 E-value=59 Score=28.98 Aligned_cols=81 Identities=6% Similarity=-0.013 Sum_probs=51.2
Q ss_pred CCeEEEEEEec--C--cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhH
Q psy17441 115 NYMKVIFIHSS--D--TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDA 190 (458)
Q Consensus 115 ~w~~v~ii~~~--d--~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~ 190 (458)
+-+.|+++..+ + .|.......+++.+++.|. .+.. .....+.......++.+.+.+.+.||+......
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~- 78 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQY------HLVV-TPHIHAKDSMVPIRYILETGSADGVIISKIEPN- 78 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSC------EEEE-CCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTT-
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCC------EEEE-ecCCcchhHHHHHHHHHHcCCccEEEEecCCCC-
Confidence 44678888865 2 6788899999999999882 2221 111222333445555567788999998754432
Q ss_pred HHHHHHHHhcCCc
Q psy17441 191 EIIFKDAQYLNMT 203 (458)
Q Consensus 191 ~~il~~a~~~g~~ 203 (458)
...++.+.+.|+.
T Consensus 79 ~~~~~~l~~~~iP 91 (288)
T 3gv0_A 79 DPRVRFMTERNMP 91 (288)
T ss_dssp CHHHHHHHHTTCC
T ss_pred cHHHHHHhhCCCC
Confidence 2456667777754
No 219
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=51.71 E-value=55 Score=29.94 Aligned_cols=79 Identities=9% Similarity=-0.042 Sum_probs=51.3
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhcc--CeEEEEEeChhh-HH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQ--ARVYLMYASKQD-AE 191 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~--~~viil~~~~~~-~~ 191 (458)
.+|+++..+ +.|.......+++.+++.|..+ ... ....+.......++.+.+.+ .+.||+...... ..
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l------~~~-~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~ 78 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPY------VPL-TTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADAR 78 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCE------EEE-ECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEE------EEe-cCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHH
Confidence 468888754 5677888899999999988432 111 11222333456677777778 999988765443 33
Q ss_pred HHHHHHHhcCC
Q psy17441 192 IIFKDAQYLNM 202 (458)
Q Consensus 192 ~il~~a~~~g~ 202 (458)
..++.+.+.|+
T Consensus 79 ~~~~~~~~~~i 89 (332)
T 2rjo_A 79 VIVEACSKAGA 89 (332)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHCCC
Confidence 56777776665
No 220
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=51.62 E-value=24 Score=32.04 Aligned_cols=86 Identities=9% Similarity=0.064 Sum_probs=52.5
Q ss_pred HHHhcCCeEEEEEEec-------CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEE
Q psy17441 110 LLKHFNYMKVIFIHSS-------DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYL 182 (458)
Q Consensus 110 ll~~~~w~~v~ii~~~-------d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vii 182 (458)
-++.-.-+.|+++..+ +.|.......+++.+++.|. .+.. .....+.......++.+.+.+.+.||
T Consensus 16 ~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI 88 (305)
T 3huu_A 16 TLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGY------STRM-TVSENSGDLYHEVKTMIQSKSVDGFI 88 (305)
T ss_dssp -----CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTC------EEEE-CCCSSHHHHHHHHHHHHHTTCCSEEE
T ss_pred HhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCC------EEEE-EeCCCChHHHHHHHHHHHhCCCCEEE
Confidence 3444455789998766 45778888999999998882 2211 11111222345667778888999999
Q ss_pred EEeChhhHHHHHHHHHhcCCc
Q psy17441 183 MYASKQDAEIIFKDAQYLNMT 203 (458)
Q Consensus 183 l~~~~~~~~~il~~a~~~g~~ 203 (458)
+...... ...++.+.+.|+.
T Consensus 89 i~~~~~~-~~~~~~l~~~~iP 108 (305)
T 3huu_A 89 LLYSLKD-DPIEHLLNEFKVP 108 (305)
T ss_dssp ESSCBTT-CHHHHHHHHTTCC
T ss_pred EeCCcCC-cHHHHHHHHcCCC
Confidence 8754432 2456677777764
No 221
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=51.39 E-value=42 Score=30.48 Aligned_cols=80 Identities=8% Similarity=-0.040 Sum_probs=49.1
Q ss_pred EEEEEEecCc-chhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChh-hHHHHHH
Q psy17441 118 KVIFIHSSDT-DGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQ-DAEIIFK 195 (458)
Q Consensus 118 ~v~ii~~~d~-~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~-~~~~il~ 195 (458)
+|+++..+.. |.......+++.+++.|. .+.....-..+.......++++.+.+++.||+..... .....++
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~------~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGV------DTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIK 76 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTC------EEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCC------EEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 5777765422 777888899999998872 2221110011223345567777778899998865443 3345677
Q ss_pred HHHhcCCc
Q psy17441 196 DAQYLNMT 203 (458)
Q Consensus 196 ~a~~~g~~ 203 (458)
.+.+.|+.
T Consensus 77 ~~~~~~iP 84 (313)
T 2h3h_A 77 KALEMGIP 84 (313)
T ss_dssp HHHHTTCC
T ss_pred HHHHCCCe
Confidence 77777754
No 222
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=50.28 E-value=35 Score=30.45 Aligned_cols=81 Identities=9% Similarity=0.026 Sum_probs=52.1
Q ss_pred CCeEEEEEEec-------CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh
Q psy17441 115 NYMKVIFIHSS-------DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK 187 (458)
Q Consensus 115 ~w~~v~ii~~~-------d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~ 187 (458)
+-++|+++..+ +.|.......+++.+++.|. .+.. .....+.......++.+.+.+.+.||+....
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~-~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~ 79 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGY------ALYM-STGETEEEIFNGVVKMVQGRQIGGIILLYSR 79 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTC------EEEE-CCCCSHHHHHHHHHHHHHTTCCCEEEESCCB
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCC------EEEE-EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 44678888766 45788889999999999882 2211 1111122334566777778899999886544
Q ss_pred hhHHHHHHHHHhcCCc
Q psy17441 188 QDAEIIFKDAQYLNMT 203 (458)
Q Consensus 188 ~~~~~il~~a~~~g~~ 203 (458)
.. ...++.+.+.|+.
T Consensus 80 ~~-~~~~~~l~~~~iP 94 (292)
T 3k4h_A 80 EN-DRIIQYLHEQNFP 94 (292)
T ss_dssp TT-CHHHHHHHHTTCC
T ss_pred CC-hHHHHHHHHCCCC
Confidence 33 2466777777764
No 223
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=49.84 E-value=50 Score=29.87 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEe
Q psy17441 31 LTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIG 76 (458)
Q Consensus 31 ~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is 76 (458)
+.+...++.|.+.++.+|+- .|.+..+.++..+-+.+++|+|+
T Consensus 56 ~~~~~~~~~L~~~g~d~IVi---ACNTas~~~l~~lr~~~~iPVig 98 (276)
T 2dwu_A 56 SFVFEMVEFLKQFPLKALVV---ACNTAAAATLAALQEALSIPVIG 98 (276)
T ss_dssp HHHHHHHHHHTTSCEEEEEE---CCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHCCCCEEEE---eCCcHHHHHHHHHHHHCCCCEEe
Confidence 34455667777789999996 45421223566676778899885
No 224
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=49.50 E-value=24 Score=31.98 Aligned_cols=46 Identities=9% Similarity=0.023 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEee
Q psy17441 28 NPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGI 77 (458)
Q Consensus 28 ~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~ 77 (458)
++.......++.|.+.|+.+|+- .|.. ....+..+-+..++|+|..
T Consensus 83 ~~~~~l~~~~~~L~~~Gad~IVI---aCNT-ah~~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 83 SPYRYLERYLHMLEDAGAECIVI---PCNT-AHYWFDDLQNVAKARMISI 128 (268)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEC---SCSG-GGGGHHHHHHHCSSEEECH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEE---eCCC-HHHHHHHHHHHCCCCEEcc
Confidence 33444566778887899999985 4553 3336677778889999974
No 225
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=49.32 E-value=34 Score=29.33 Aligned_cols=61 Identities=7% Similarity=0.095 Sum_probs=38.0
Q ss_pred eEEeeeccCCCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHH--HHHc-CCCCHHHHHHHhh
Q psy17441 387 AAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRT--MEAN-NYDTAEDAIADVK 457 (458)
Q Consensus 387 ~s~lt~~~~~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~gi~~v~ 457 (458)
..+++. +-..+|++++||. +.++|+..|+....+++.-. +.+.. ++.. ...+.++++++|.
T Consensus 96 ~~~~~~-~~~~~i~~~~dL~------g~~i~~~~g~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~ 159 (246)
T 4eq9_A 96 NVLVVK-KDDSSIKSLDDIG------GKSTEVVQATTSAKQLEAYN---AEHTDNPTILNYTKADFQQIMVRLS 159 (246)
T ss_dssp EEEEEE-TTCCSCSSGGGCT------TCEEEECTTCHHHHHHHHHH---HHCTTSCCEEEECCCCHHHHHHHHH
T ss_pred eEEEEE-CCCCCCCCHHHhC------CCEEEEecCccHHHHHHHHH---hhCCCcceEEEecCCCHHHHHHHHH
Confidence 334433 3345799999997 78999999999988887620 00000 0001 1247788888775
No 226
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=49.18 E-value=1.6e+02 Score=26.97 Aligned_cols=145 Identities=12% Similarity=-0.005 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHhhcCCeEEEEEeCCCCCC-CchHHHHHhhccc-CCcEEeeecCCCCCCCCccccceeecCCCchhHHH
Q psy17441 28 NPILTALSVCKFLISERVYAVIVSHPLTGD-LSPAAVSYTSGFY-HIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQAD 105 (458)
Q Consensus 28 ~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~-~~~~~~~~i~~~~-~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ 105 (458)
.|.+.+..+++++.+.++-+++-. ...-. .....+...+... ++.+|.|++-- +-++.. .+.-..|.
T Consensus 79 vP~~~~~~~~~e~i~~Gi~~iv~~-t~G~~~~~~~~l~~~a~~~~gi~liGPnc~G--ii~p~~--~~~~~~~~------ 147 (305)
T 2fp4_A 79 VPPPFAAAAINEAIDAEVPLVVCI-TEGIPQQDMVRVKHRLLRQGKTRLIGPNCPG--VINPGE--CKIGIMPG------ 147 (305)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEC-CCCCCHHHHHHHHHHHTTCSSCEEECSSSCE--EEETTT--EEEESSCG------
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEE-CCCCChHHHHHHHHHHHhcCCcEEEeCCCCe--Eecccc--cceeeccc------
Confidence 355667777777878888764420 22111 0123688889999 99999887732 211211 11112232
Q ss_pred HHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCC---cccHHHHHHHHHh-ccCeEE
Q psy17441 106 VWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPG---LTTFKDQLYEMKN-AQARVY 181 (458)
Q Consensus 106 ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~---~~d~~~~l~~ik~-~~~~vi 181 (458)
..+.--+|+++......+ ..+.+.+.+.|+.+ ...+.+-.+ ..++.+.|+-+.+ ..+++|
T Consensus 148 ------~~~~~G~va~vSqSG~l~----~~~~~~~~~~g~G~------S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I 211 (305)
T 2fp4_A 148 ------HIHKKGRIGIVSRSGTLT----YEAVHQTTQVGLGQ------SLCVGIGGDPFNGTDFTDCLEIFLNDPATEGI 211 (305)
T ss_dssp ------GGCCEEEEEEEESCSHHH----HHHHHHHHHTTCCE------EEEEECCSSSSCSCCHHHHHHHHHHCTTCCEE
T ss_pred ------cCCCCCCEEEEecchHHH----HHHHHHHHhcCCCe------eEEeccCCCcCCCCCHHHHHHHHhcCCCCcEE
Confidence 123457899998876655 33444556666332 223333222 4678888888765 678999
Q ss_pred EEEeCh-----hhHHHHHHHHHh
Q psy17441 182 LMYASK-----QDAEIIFKDAQY 199 (458)
Q Consensus 182 il~~~~-----~~~~~il~~a~~ 199 (458)
+++... .+++.|++++++
T Consensus 212 ~l~~E~~g~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 212 ILIGEIGGNAEENAAEFLKQHNS 234 (305)
T ss_dssp EEEEESSSSHHHHHHHHHHHHSC
T ss_pred EEEEecCCchhhHHHHHHHHHHH
Confidence 998775 468899998765
No 227
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=48.51 E-value=48 Score=29.44 Aligned_cols=69 Identities=9% Similarity=0.093 Sum_probs=44.9
Q ss_pred HHhcCCeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEe
Q psy17441 111 LKHFNYMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYA 185 (458)
Q Consensus 111 l~~~~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~ 185 (458)
++.-.-+.|+++..+ +.|.......+++.+++.|..+ +.. .....+.......++.+.+.+.|.||+..
T Consensus 5 L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~-----~~~-~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 5 LYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTA-----LIS-FSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ---CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEE-----EEE-ECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCE-----EEE-EeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 444455789998865 5678888999999999988220 111 11122333445667778888999999886
No 228
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=48.40 E-value=59 Score=26.89 Aligned_cols=67 Identities=9% Similarity=0.011 Sum_probs=42.2
Q ss_pred cCCeEEEEEEecCcchh---HHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHh-ccCeEEEEEeC
Q psy17441 114 FNYMKVIFIHSSDTDGR---ALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKN-AQARVYLMYAS 186 (458)
Q Consensus 114 ~~w~~v~ii~~~d~~g~---~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~-~~~~viil~~~ 186 (458)
|.--+++||...|+-|+ .....+.+.+++.| ..+.....++.+.+.+.+.+++..+ .++|+||..+-
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G------~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAG------HKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHT------CEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCC------CeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 34457888887665432 34566778888777 3334444456566667777777655 36898888743
No 229
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=48.23 E-value=11 Score=33.82 Aligned_cols=53 Identities=8% Similarity=0.167 Sum_probs=35.2
Q ss_pred CCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 397 TKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 397 ~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
.+|++++||. +.++|+..++....+++... ......++...+.+.++++++|.
T Consensus 120 ~~i~sl~dL~------g~~v~~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~L~ 172 (287)
T 2vha_A 120 GDIKDFADLK------GKAVVVTSGTTSEVLLNKLN--EEQKMNMRIISAKDHGDSFRTLE 172 (287)
T ss_dssp SSCCSGGGGT------TCEEEEETTSHHHHHHHHHH--HHTTCCCEEEEESSHHHHHHHHH
T ss_pred CCCCCHHHcC------CCEEEEeCCCcHHHHHHHHh--hccCCCceEEEcCCHHHHHHHHH
Confidence 4699999997 67899999999888887531 00000112224677778877765
No 230
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=48.23 E-value=22 Score=32.13 Aligned_cols=43 Identities=12% Similarity=0.262 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhcCCeEEEEEeCCCCCCCch-HHHHHhhcccCCcEEee
Q psy17441 31 LTALSVCKFLISERVYAVIVSHPLTGDLSP-AAVSYTSGFYHIPVIGI 77 (458)
Q Consensus 31 ~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~-~~~~~i~~~~~iP~Is~ 77 (458)
......++.|.+.++.+|+- .|.+ .+ .++..+-+..++|+|..
T Consensus 52 ~~~~~~~~~L~~~g~d~ivi---aCNT-as~~~l~~lr~~~~iPvigi 95 (267)
T 2gzm_A 52 QFTWEMTEHLLDLNIKMLVI---ACNT-ATAVVLEEMQKQLPIPVVGV 95 (267)
T ss_dssp HHHHHHHHHHHTTTCSEEEE---CCHH-HHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHHHHCCCCEEEE---eCch-hhHHHHHHHHHhCCCCEEee
Confidence 34445567777789988886 3542 32 35667777789998863
No 231
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=46.91 E-value=57 Score=28.74 Aligned_cols=78 Identities=6% Similarity=-0.052 Sum_probs=50.5
Q ss_pred CeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHH
Q psy17441 116 YMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEII 193 (458)
Q Consensus 116 w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~i 193 (458)
-+.|+++..+ +.|.......+++.+++.|..+ .. .....+.......++.+.+.+++.||+.... ...
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~------~~-~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~ 77 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQV------LI-GNSDNDIKKAQGYLATFVSHNCTGMISTAFN---ENI 77 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCE------EE-EECTTCHHHHHHHHHHHHHTTCSEEEECGGG---HHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEE------EE-EeCCCCHHHHHHHHHHHHhCCCCEEEEecCC---hHH
Confidence 3568888765 5678888999999999988332 11 1222233445667778888899999997633 234
Q ss_pred HH-HHHhcCCc
Q psy17441 194 FK-DAQYLNMT 203 (458)
Q Consensus 194 l~-~a~~~g~~ 203 (458)
++ .+.+.|+.
T Consensus 78 ~~~~l~~~~iP 88 (277)
T 3e61_A 78 IENTLTDHHIP 88 (277)
T ss_dssp HHHHHHHC-CC
T ss_pred HHHHHHcCCCC
Confidence 66 67777653
No 232
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=46.34 E-value=77 Score=28.19 Aligned_cols=80 Identities=4% Similarity=-0.078 Sum_probs=50.7
Q ss_pred CeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHH---HHHHHHhccCeEEEEEeChhhH
Q psy17441 116 YMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKD---QLYEMKNAQARVYLMYASKQDA 190 (458)
Q Consensus 116 w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~---~l~~ik~~~~~viil~~~~~~~ 190 (458)
-+.|+++..+ ++|.......+++.+++.|. .+.. .....+...... .++.+.+.+.+.||+......
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~- 79 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHR------HVVV-ATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH- 79 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTC------EEEE-ECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCC------EEEE-EeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC-
Confidence 3578888754 56788888999999998883 2211 111222233445 677788888999998765433
Q ss_pred HHHHHHHHhcCCc
Q psy17441 191 EIIFKDAQYLNMT 203 (458)
Q Consensus 191 ~~il~~a~~~g~~ 203 (458)
...++.+.+.|+.
T Consensus 80 ~~~~~~l~~~~iP 92 (290)
T 2rgy_A 80 DEDLDELHRMHPK 92 (290)
T ss_dssp HHHHHHHHHHCSS
T ss_pred HHHHHHHhhcCCC
Confidence 3455666666653
No 233
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=46.27 E-value=83 Score=27.85 Aligned_cols=80 Identities=9% Similarity=0.042 Sum_probs=49.8
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChh-hHHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQ-DAEII 193 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~-~~~~i 193 (458)
+.++++..+ ++|.......+++.+++.|.. +.. .....+.......++.+.+.++|.||+..... .....
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~------~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 74 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYK------IIV-EDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTA 74 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCE------EEE-EECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcE------EEE-ecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHH
Confidence 367787754 567888889999999988832 211 11112223334567777778899998865432 22345
Q ss_pred HHHHHhcCCc
Q psy17441 194 FKDAQYLNMT 203 (458)
Q Consensus 194 l~~a~~~g~~ 203 (458)
++.+.+.|+.
T Consensus 75 ~~~~~~~~iP 84 (283)
T 2ioy_A 75 IKEANSKNIP 84 (283)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHCCCe
Confidence 6777777753
No 234
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=46.06 E-value=60 Score=26.67 Aligned_cols=63 Identities=14% Similarity=0.053 Sum_probs=40.5
Q ss_pred EEEEEEecCcc--h---hHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhc-cCeEEEEEeC
Q psy17441 118 KVIFIHSSDTD--G---RALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNA-QARVYLMYAS 186 (458)
Q Consensus 118 ~v~ii~~~d~~--g---~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~-~~~viil~~~ 186 (458)
+++||...|+- | ......+.+.+++.| ..+.....++.+.+.+.+.+++..+. ++|+||..+-
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G------~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG 71 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGP------FEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGG 71 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSS------EEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCC------CeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 57777765541 1 123466888888877 44444455565666777777776654 6899988743
No 235
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=45.13 E-value=1.2e+02 Score=27.39 Aligned_cols=81 Identities=9% Similarity=0.028 Sum_probs=50.6
Q ss_pred CeEEEEEEec-CcchhHHHHHHHHhhhcc-CCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhh-HHH
Q psy17441 116 YMKVIFIHSS-DTDGRALLGRFQTTSQNQ-EDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQD-AEI 192 (458)
Q Consensus 116 w~~v~ii~~~-d~~g~~~~~~l~~~l~~~-gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~-~~~ 192 (458)
-.+|+++..+ +.|.......+++.+++. |. .+.. .....+.......++.+.+.+++.||+...... ...
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~------~l~i-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~ 78 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGV------SVEI-RSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTP 78 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSC------EEEE-EECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCc------EEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHH
Confidence 3578888764 446667788899999887 72 2221 111222333456677777788999998765433 245
Q ss_pred HHHHHHhcCCc
Q psy17441 193 IFKDAQYLNMT 203 (458)
Q Consensus 193 il~~a~~~g~~ 203 (458)
.++++.+.|+.
T Consensus 79 ~~~~~~~~~iP 89 (325)
T 2x7x_A 79 IVEEAYQKGIP 89 (325)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHCCCe
Confidence 66777666653
No 236
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=45.05 E-value=54 Score=27.74 Aligned_cols=63 Identities=10% Similarity=0.081 Sum_probs=39.5
Q ss_pred eEEEEEEecCcc--h--hHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEe
Q psy17441 117 MKVIFIHSSDTD--G--RALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYA 185 (458)
Q Consensus 117 ~~v~ii~~~d~~--g--~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~ 185 (458)
-+++||...|+- | ......+.+.+++.| ..+.....++.+.+.+.+.+++..+.++|+|+..+
T Consensus 31 ~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G------~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttG 97 (185)
T 3rfq_A 31 GRALVVVVDDRTAHGDEDHSGPLVTELLTEAG------FVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVG 97 (185)
T ss_dssp EEEEEEEECHHHHTTCCCSHHHHHHHHHHHTT------EEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEES
T ss_pred CEEEEEEECcccCCCCcCcHHHHHHHHHHHCC------CEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECC
Confidence 467777765531 2 233566777888777 44444445565566677777776545789888774
No 237
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=44.82 E-value=17 Score=32.62 Aligned_cols=48 Identities=10% Similarity=0.109 Sum_probs=33.6
Q ss_pred CCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 396 KTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 396 ~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
..+|++++||. +.++|+..++....+++.. .++...+.+.++.+++|.
T Consensus 153 ~~~i~s~~dL~------G~~v~v~~g~~~~~~l~~~--------~~~~~~~~~~~~~~~~l~ 200 (283)
T 2yln_A 153 DSNIKSIADIK------GVKTAQSLTSNYGEKAKAA--------GAQLVPVDGLAQSLTLIE 200 (283)
T ss_dssp TCSCCSGGGCT------TSEEEECTTSHHHHHHHHT--------TCEEEECSSHHHHHHHHH
T ss_pred CCCCCCHHHhC------CCEEEEecCchHHHHHHHc--------CCeEEEeCCHHHHHHHHH
Confidence 34599999997 7889999999998888763 122223556666666554
No 238
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=44.66 E-value=28 Score=32.25 Aligned_cols=68 Identities=13% Similarity=0.006 Sum_probs=43.9
Q ss_pred HHhcCCeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeC
Q psy17441 111 LKHFNYMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYAS 186 (458)
Q Consensus 111 l~~~~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~ 186 (458)
++.-.-+.|+++..+ +.|.......+++.+++.|. .+... ... +.......++.+.+.+.|.||+...
T Consensus 59 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~~-~~~-~~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 59 LREHRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGY------QMLVA-EAN-SVQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp -----CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTC------EEEEE-ECC-SHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred hhcCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCC------EEEEE-CCC-ChHHHHHHHHHHHhCCCCEEEEcch
Confidence 333345679999865 45788889999999999883 22211 112 2334456777888889999998765
No 239
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=44.65 E-value=89 Score=22.84 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=48.3
Q ss_pred eeecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHH
Q psy17441 93 FLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYE 172 (458)
Q Consensus 93 ~~r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ 172 (458)
+.-.+-.+..-++..+.+++..|-.-..+||+.|. +.++.|....+..|..| . .. ....|+...+.+
T Consensus 53 ivvvvvddkewaekairfvkslgaqvliiiydqdq---nrleefsrevrrrgfev------r---tv-tspddfkksler 119 (134)
T 2l69_A 53 IVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQDQ---NRLEEFSREVRRRGFEV------R---TV-TSPDDFKKSLER 119 (134)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHCCCCEEEEECSCH---HHHHHHHHHHHHTTCCE------E---EE-SSHHHHHHHHHH
T ss_pred EEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCch---hHHHHHHHHHHhcCceE------E---Ee-cChHHHHHHHHH
Confidence 34444566677888889999999999999998763 45788888888888332 2 12 234577777766
Q ss_pred HH
Q psy17441 173 MK 174 (458)
Q Consensus 173 ik 174 (458)
+.
T Consensus 120 li 121 (134)
T 2l69_A 120 LI 121 (134)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 240
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=44.43 E-value=14 Score=33.37 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=33.5
Q ss_pred CCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 398 KLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 398 ~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
+|++++||+ +.++|+..++....+++..- ...+...+.+.++++++|.
T Consensus 155 ~i~sl~dL~------gk~v~~~~g~~~~~~l~~~~------~~~~~~~~~~~~~~~~~l~ 202 (291)
T 2yjp_A 155 PITDMAQLK------DQTLLVNKGTTADAFFTKSH------PEVKLLKFDQNTETFDALK 202 (291)
T ss_dssp CCCSGGGGT------TSEEEEETTSHHHHHHHHHC------TTSEEEEESSHHHHHHHHH
T ss_pred CCCCHHHhC------CCEEEEecCCcHHHHHHHhC------CCceEEEeCCHHHHHHHHH
Confidence 799999997 78899999999988887630 0111123566666766654
No 241
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=43.77 E-value=53 Score=31.10 Aligned_cols=80 Identities=10% Similarity=0.013 Sum_probs=52.6
Q ss_pred HHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCC--CcccHHHHHHHHHhccCeEEEEE
Q psy17441 107 WVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEP--GLTTFKDQLYEMKNAQARVYLMY 184 (458)
Q Consensus 107 i~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~--~~~d~~~~l~~ik~~~~~viil~ 184 (458)
+.++++.++ +++.++++...+. ...+.+.+.+++.|+. +.. ..++. ..+++.+.++.+++.+++.||-.
T Consensus 23 l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~------~~~-~~~~ge~~~~~v~~~~~~~~~~~~d~IIav 93 (370)
T 1jq5_A 23 IANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIA------AEE-VVFSGEASRNEVERIANIARKAEAAIVIGV 93 (370)
T ss_dssp HHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCE------EEE-EECCSSCBHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCe------EEE-EeeCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 556777788 9999998765433 4578888999887732 221 22322 23456677777888899999977
Q ss_pred eCh--hhHHHHHH
Q psy17441 185 ASK--QDAEIIFK 195 (458)
Q Consensus 185 ~~~--~~~~~il~ 195 (458)
+-+ -|+..++.
T Consensus 94 GGGsv~D~aK~iA 106 (370)
T 1jq5_A 94 GGGKTLDTAKAVA 106 (370)
T ss_dssp ESHHHHHHHHHHH
T ss_pred CChHHHHHHHHHH
Confidence 654 34555544
No 242
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=43.66 E-value=45 Score=29.83 Aligned_cols=79 Identities=11% Similarity=0.014 Sum_probs=43.9
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIF 194 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il 194 (458)
++|+++..+ +.|.......+++.+++.|..+ ........+.......++.+.+.+++.||+...... ...+
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~------~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~ 81 (290)
T 3clk_A 9 NVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNL------IIVYSGSADPEEQKHALLTAIERPVMGILLLSIALT-DDNL 81 (290)
T ss_dssp CEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEE------EEEC----------CHHHHHHSSCCSEEEEESCC-----CH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeE------EEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHH
Confidence 578888753 5688888999999999988322 111011112223345667777788999998765432 2345
Q ss_pred HHHHhcCC
Q psy17441 195 KDAQYLNM 202 (458)
Q Consensus 195 ~~a~~~g~ 202 (458)
+.+.+.|+
T Consensus 82 ~~l~~~~i 89 (290)
T 3clk_A 82 QLLQSSDV 89 (290)
T ss_dssp HHHHCC--
T ss_pred HHHHhCCC
Confidence 55655554
No 243
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=43.39 E-value=77 Score=27.78 Aligned_cols=79 Identities=10% Similarity=0.072 Sum_probs=50.0
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIF 194 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il 194 (458)
+.|+++..+ ++|.......+++.+++.|..+ .. .....+.......++.+.+.+.+.||+...... ...+
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~------~~-~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~ 75 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQL------LL-GYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTH 75 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEE------CC-EECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEE------EE-EcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHH
Confidence 468888754 5677888899999999988321 11 111222333455677788888998888765432 2456
Q ss_pred HHHHhcCCc
Q psy17441 195 KDAQYLNMT 203 (458)
Q Consensus 195 ~~a~~~g~~ 203 (458)
+.+.+.|..
T Consensus 76 ~~l~~~~iP 84 (275)
T 3d8u_A 76 QLLEASNTP 84 (275)
T ss_dssp HHHHHHTCC
T ss_pred HHHHhCCCC
Confidence 666666653
No 244
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=43.20 E-value=72 Score=26.27 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=36.7
Q ss_pred EEEEEEecCcc--h---hHHHHHHHHh----hhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEe
Q psy17441 118 KVIFIHSSDTD--G---RALLGRFQTT----SQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYA 185 (458)
Q Consensus 118 ~v~ii~~~d~~--g---~~~~~~l~~~----l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~ 185 (458)
+++||...|+- | ......+.+. +++.| ..+.....++.+.+.+.+.+++..+.++|+|+..+
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G------~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittG 77 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYS------YELISEVVVPEGYDTVVEAIATALKQGARFIITAG 77 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CE------EEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEES
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCC------CEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECC
Confidence 67777765542 1 1234567777 77766 44444455666666777777777654589998874
No 245
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=43.15 E-value=86 Score=27.51 Aligned_cols=80 Identities=10% Similarity=0.081 Sum_probs=49.5
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhh-HHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQD-AEII 193 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~-~~~i 193 (458)
+.++++..+ ++|.......+++.+++.|.. +.. .....+...-...++.+.+.++|.||+...... ....
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~------~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 74 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYN------LVV-LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNA 74 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCE------EEE-EECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcE------EEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHH
Confidence 467888754 567888899999999988832 211 111122223345566777778999888654332 2345
Q ss_pred HHHHHhcCCc
Q psy17441 194 FKDAQYLNMT 203 (458)
Q Consensus 194 l~~a~~~g~~ 203 (458)
++.+.+.|..
T Consensus 75 ~~~~~~~~iP 84 (271)
T 2dri_A 75 VKMANQANIP 84 (271)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHCCCc
Confidence 6777777653
No 246
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=42.37 E-value=1.4e+02 Score=24.35 Aligned_cols=87 Identities=8% Similarity=-0.110 Sum_probs=55.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh----hhHHH
Q psy17441 117 MKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK----QDAEI 192 (458)
Q Consensus 117 ~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~----~~~~~ 192 (458)
.+|.+.....+...-....+...++..| ..+. .. .........++.+++.++++|.+.+.. .....
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G------~eVi---~l-G~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~ 88 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAG------FEVV---YT-GLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKR 88 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTT------CEEE---CC-CSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCC------CEEE---EC-CCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHH
Confidence 4566666555555555677777888887 2221 11 123456677888888999999988754 34667
Q ss_pred HHHHHHhcCCcccceEEEeecc
Q psy17441 193 IFKDAQYLNMTETGYVWIVTEQ 214 (458)
Q Consensus 193 il~~a~~~g~~~~~~~wi~t~~ 214 (458)
++++.++.|... -.+|+....
T Consensus 89 ~i~~L~~~g~~~-i~v~vGG~~ 109 (161)
T 2yxb_A 89 LMAKLRELGADD-IPVVLGGTI 109 (161)
T ss_dssp HHHHHHHTTCTT-SCEEEEECC
T ss_pred HHHHHHhcCCCC-CEEEEeCCC
Confidence 777777877622 356666543
No 247
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=42.08 E-value=91 Score=27.97 Aligned_cols=80 Identities=8% Similarity=0.011 Sum_probs=50.8
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhh-HHHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQD-AEII 193 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~-~~~i 193 (458)
.+|+++..+ +.|.......+++.+++.|. .+... ....+.....+.++.+.+.+++.||+...... ....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~------~l~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 75 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGI------TLKIA-DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPV 75 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTC------EEEEE-ECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCC------EEEEe-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHH
Confidence 468888754 45777888889999998883 22211 11222333456677777788999988765432 2456
Q ss_pred HHHHHhcCCc
Q psy17441 194 FKDAQYLNMT 203 (458)
Q Consensus 194 l~~a~~~g~~ 203 (458)
++.+.+.|+.
T Consensus 76 ~~~~~~~~iP 85 (306)
T 2vk2_A 76 LKEAKDAEIP 85 (306)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHCCCC
Confidence 6777776653
No 248
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=41.94 E-value=30 Score=30.89 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=48.7
Q ss_pred eEEEEEEec----CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC--CCcccHHHHHHHHHhccCeEEEEEeChhh-
Q psy17441 117 MKVIFIHSS----DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE--PGLTTFKDQLYEMKNAQARVYLMYASKQD- 189 (458)
Q Consensus 117 ~~v~ii~~~----d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~--~~~~d~~~~l~~ik~~~~~viil~~~~~~- 189 (458)
++|+++..+ +.|.......+++.+++.|. .+.. ...+ .+.......++.+.+.+++.||+......
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~-~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 78 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEI------KLEF-MAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEK 78 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTC------EEEE-CCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTT
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCC------EEEE-ecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHH
Confidence 468888753 56788888999999998872 2211 1111 12233445677777788999988755433
Q ss_pred HHHHHHHHHhcCC
Q psy17441 190 AEIIFKDAQYLNM 202 (458)
Q Consensus 190 ~~~il~~a~~~g~ 202 (458)
....++.+.+.|+
T Consensus 79 ~~~~~~~~~~~~i 91 (289)
T 3brs_A 79 TYDAAKEIKDAGI 91 (289)
T ss_dssp THHHHTTTGGGTC
T ss_pred hHHHHHHHHHCCC
Confidence 2345666655554
No 249
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=41.85 E-value=49 Score=28.75 Aligned_cols=59 Identities=27% Similarity=0.314 Sum_probs=43.4
Q ss_pred CCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhch--------hhHHHHHHHHH-----cCCCCHHHHHHHhh
Q psy17441 396 KTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQV--------ELSNMYRTMEA-----NNYDTAEDAIADVK 457 (458)
Q Consensus 396 ~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~--------~~~~~~~~~~~-----~~~~~~~~gi~~v~ 457 (458)
..+|++++||+ ..-.+..|+..++....++++.. .|.++|+.++. ..+++.++++++|+
T Consensus 114 ~~~i~~~~dL~---~~v~v~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 185 (265)
T 2v3u_A 114 GTSIQSLQDLS---KQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVK 185 (265)
T ss_dssp TCCCCSHHHHH---TCSSSCEECBTTSHHHHHHHHHHTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHH
T ss_pred CCCccchhhhh---hhhcEEEEEeccHHHHHHHHhcCCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHH
Confidence 34699999997 23356788888888888887641 26677777742 35889999999885
No 250
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=41.03 E-value=1.6e+02 Score=25.79 Aligned_cols=64 Identities=9% Similarity=0.004 Sum_probs=42.9
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK 187 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~ 187 (458)
++|+++..+ ++|.......+++.+++.|. .+.. .....+.....+.++.+.+.+++.||+....
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGY------TLIL-GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTC------EEEE-EECTTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCC------eEEE-EcCCCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 578888754 56778888999999998882 2221 1112233344566777778889999987654
No 251
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=40.62 E-value=61 Score=27.53 Aligned_cols=48 Identities=10% Similarity=0.268 Sum_probs=32.7
Q ss_pred CChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 400 TGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 400 ~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
++++||. +.++|+..++....++++. +.. ..++...+++.++++++|.
T Consensus 104 ~~~~dL~------g~~v~~~~g~~~~~~l~~~--~~~--~~~~~~~~~~~~~~~~~l~ 151 (239)
T 1lst_A 104 PTLESLK------GKHVGVLQGSTQEAYANDN--WRT--KGVDVVAYANQDLIYSDLT 151 (239)
T ss_dssp SSHHHHT------TCEEEEETTSHHHHHHHHH--TGG--GTCEEEEESSHHHHHHHHH
T ss_pred CCHHHhC------CCEEEEEcCccHHHHHHHh--ccc--CCCeEEEcCCHHHHHHHHH
Confidence 5999997 6789999999998888653 100 0122224677777777765
No 252
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=40.53 E-value=76 Score=26.52 Aligned_cols=66 Identities=5% Similarity=-0.080 Sum_probs=42.2
Q ss_pred cCCeEEEEEEecCc-c------h---hHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhc-cCeEEE
Q psy17441 114 FNYMKVIFIHSSDT-D------G---RALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNA-QARVYL 182 (458)
Q Consensus 114 ~~w~~v~ii~~~d~-~------g---~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~-~~~vii 182 (458)
+.--+++||...|. + | ......+.+.+++.| ..+......+.+.+.+.+.+++..+. ++|+||
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G------~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVi 86 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENG------HKIIGYSLVPDDKIKILKAFTDALSIDEVDVII 86 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTT------CEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCC------CEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 44467888887653 1 2 234567788888877 33344444565666677777776554 489998
Q ss_pred EEe
Q psy17441 183 MYA 185 (458)
Q Consensus 183 l~~ 185 (458)
..+
T Consensus 87 ttG 89 (178)
T 2pjk_A 87 STG 89 (178)
T ss_dssp EES
T ss_pred ECC
Confidence 874
No 253
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=40.51 E-value=1.4e+02 Score=24.02 Aligned_cols=89 Identities=8% Similarity=-0.086 Sum_probs=49.9
Q ss_pred eEEEEEEecC-cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcc-cHHHHHHHHHhccCeEEEEEeChhh--H--
Q psy17441 117 MKVIFIHSSD-TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLT-TFKDQLYEMKNAQARVYLMYASKQD--A-- 190 (458)
Q Consensus 117 ~~v~ii~~~d-~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~-d~~~~l~~ik~~~~~viil~~~~~~--~-- 190 (458)
+++.|+|... ...+..++.+.+.+++.|+ .+. .++.... +....+.++.+ .+.|++.++... .
T Consensus 5 ~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~------~v~---~~~~~~~~~~~~~~~~~~~--~d~ii~Gspty~g~~p~ 73 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLAQAIINGITKTGV------GVD---VVDLGAAVDLQELRELVGR--CTGLVIGMSPAASAASI 73 (159)
T ss_dssp CEEEEEECTTSTTHHHHHHHHHHHHHHTTC------EEE---EEESSSCCCHHHHHHHHHT--EEEEEEECCBTTSHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHCCC------eEE---EEECcCcCCHHHHHHHHHh--CCEEEEEcCcCCCCccH
Confidence 5788888654 2334678888898988772 221 1223334 56666666654 577777765422 1
Q ss_pred HHHHHHHHhcCCcccceEEEeecccc
Q psy17441 191 EIIFKDAQYLNMTETGYVWIVTEQAL 216 (458)
Q Consensus 191 ~~il~~a~~~g~~~~~~~wi~t~~~~ 216 (458)
..++.......+.+.....+.+.+|.
T Consensus 74 ~~~l~~l~~~~~~~k~va~fgs~g~~ 99 (159)
T 3fni_A 74 QGALSTILGSVNEKQAVGIFETGGGD 99 (159)
T ss_dssp HHHHHHHHHHCCTTSEEEEECCSSSC
T ss_pred HHHHHHHHhhcccCCEEEEEEcCCCC
Confidence 34565655555554433444444443
No 254
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=40.42 E-value=49 Score=29.72 Aligned_cols=79 Identities=10% Similarity=0.014 Sum_probs=49.4
Q ss_pred eEEEEEEe-------cCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhh
Q psy17441 117 MKVIFIHS-------SDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQD 189 (458)
Q Consensus 117 ~~v~ii~~-------~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~ 189 (458)
+.|+++.. .+.|.......+++.+++.|. .+.. .....+.......++.+.+.+.|.||+......
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 80 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGY------GTQT-TVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN 80 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTC------EEEE-CCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCC------EEEE-EcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC
Confidence 56888872 356788889999999999882 2211 111112223445667777888999988654322
Q ss_pred HHHHHHHHHhcCCc
Q psy17441 190 AEIIFKDAQYLNMT 203 (458)
Q Consensus 190 ~~~il~~a~~~g~~ 203 (458)
...++.+.+.|+.
T Consensus 81 -~~~~~~l~~~~iP 93 (295)
T 3hcw_A 81 -DPIKQMLIDESMP 93 (295)
T ss_dssp -CHHHHHHHHTTCC
T ss_pred -hHHHHHHHhCCCC
Confidence 2456666666654
No 255
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=40.22 E-value=90 Score=28.91 Aligned_cols=76 Identities=4% Similarity=-0.085 Sum_probs=46.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHH
Q psy17441 117 MKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKD 196 (458)
Q Consensus 117 ~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~ 196 (458)
+++.+|+.-..-.......+.+.+++.|+.+ .... .....+.....++....+.|.|++.+-......+++.
T Consensus 30 ~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~------~~~~--t~~~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~ 101 (332)
T 2bon_A 30 PASLLILNGKSTDNLPLREAIMLLREEGMTI------HVRV--TWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTA 101 (332)
T ss_dssp CCEEEEECSSSTTCHHHHHHHHHHHTTTCCE------EEEE--CCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHH
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHcCCcE------EEEE--ecCcchHHHHHHHHHhcCCCEEEEEccchHHHHHHHH
Confidence 6788887544322145677888888887332 1111 1222344455555555678888888888788888887
Q ss_pred HHhc
Q psy17441 197 AQYL 200 (458)
Q Consensus 197 a~~~ 200 (458)
+.+.
T Consensus 102 l~~~ 105 (332)
T 2bon_A 102 LIQC 105 (332)
T ss_dssp HHHC
T ss_pred Hhhc
Confidence 7643
No 256
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=39.69 E-value=1.7e+02 Score=24.74 Aligned_cols=89 Identities=8% Similarity=-0.112 Sum_probs=57.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh----hhHHH
Q psy17441 117 MKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK----QDAEI 192 (458)
Q Consensus 117 ~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~----~~~~~ 192 (458)
.+|.+....++...-....+...++.+| ..+. .+. ........+..+++.++++|.+.+.. .....
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G------~~v~---~LG-~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~ 158 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGG------FTVY---NLG-VDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKS 158 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTT------CEEE---ECC-SSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCC------CEEE---ECC-CCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHH
Confidence 4677777666555555777888888888 2222 122 23446677778888899999988653 34677
Q ss_pred HHHHHHhcCCcccceEEEeeccc
Q psy17441 193 IFKDAQYLNMTETGYVWIVTEQA 215 (458)
Q Consensus 193 il~~a~~~g~~~~~~~wi~t~~~ 215 (458)
++++.++.|+..+-.+++....+
T Consensus 159 ~i~~l~~~~~~~~~~v~vGG~~~ 181 (210)
T 1y80_A 159 TIDALIAAGLRDRVKVIVGGAPL 181 (210)
T ss_dssp HHHHHHHTTCGGGCEEEEESTTC
T ss_pred HHHHHHhcCCCCCCeEEEECCCC
Confidence 77888888765333566655443
No 257
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=39.20 E-value=18 Score=31.68 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEee
Q psy17441 28 NPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGI 77 (458)
Q Consensus 28 ~~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~ 77 (458)
++.......++.+.+.++.+|+- .|.+ ....+..+-+..++|+|+.
T Consensus 58 ~~~~~l~~~~~~l~~~g~d~ivi---aCnT-a~~~~~~l~~~~~iPvi~i 103 (228)
T 1jfl_A 58 DPRPQLIWTAKRLEECGADFIIM---PCNT-AHAFVEDIRKAIKIPIISM 103 (228)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEC---SCTG-GGGGHHHHHHHCSSCBCCH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEE---cCcc-HHHHHHHHHHhCCCCEech
Confidence 34455556677776778988885 4553 3355666667778888864
No 258
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=39.05 E-value=18 Score=32.49 Aligned_cols=48 Identities=23% Similarity=0.455 Sum_probs=33.1
Q ss_pred CCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 398 KLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 398 ~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
+|++++||+ +.++|+..++....+++..- ...+...+.+.+++++.|.
T Consensus 144 ~i~~~~dL~------g~~i~~~~g~~~~~~l~~~~------~~~~~~~~~~~~~~~~~L~ 191 (292)
T 1xt8_A 144 NITSVEDLK------DKTLLLNKGTTADAYFTQNY------PNIKTLKYDQNTETFAALM 191 (292)
T ss_dssp CCCSSGGGT------TSEEEEETTSHHHHHHHHHC------TTSEEEEESSHHHHHHHHH
T ss_pred CCCCHHHhC------CCEEEEeCCCcHHHHHHHhC------CCceEEEcCCHHHHHHHHH
Confidence 799999997 78899999999988887531 0111123566666666654
No 259
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=38.66 E-value=33 Score=31.01 Aligned_cols=44 Identities=14% Similarity=0.317 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhc-CCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEee
Q psy17441 31 LTALSVCKFLIS-ERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGI 77 (458)
Q Consensus 31 ~~~~~~~~~l~~-~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~ 77 (458)
+.+...++.|.+ .++.+|+- .|.+..+.++..+-+.+++|+|..
T Consensus 52 ~~~~~~~~~L~~~~g~d~iVi---ACNTas~~~l~~lr~~~~iPVigi 96 (272)
T 1zuw_A 52 QYTWELTNYLLENHHIKMLVI---ACNTATAIALDDIQRSVGIPVVGV 96 (272)
T ss_dssp HHHHHHHHHHHHHSCCSEEEE---CCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHHHhhcCCCEEEE---eCchhhHHHHHHHHHHCCCCEEcc
Confidence 344556677777 89988885 354212235666777788998863
No 260
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=38.06 E-value=86 Score=30.00 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=57.6
Q ss_pred HHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCC-----CcccHHHHHHHHHhccC---eEE
Q psy17441 110 LLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEP-----GLTTFKDQLYEMKNAQA---RVY 181 (458)
Q Consensus 110 ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~-----~~~d~~~~l~~ik~~~~---~vi 181 (458)
+++.++.+++.+|++...+. ...+.+.+.+++.|+. +.. ..++. ..+.+.+.++.+++.++ +.|
T Consensus 56 ~l~~~~~~rvlIVtd~~v~~-~~~~~v~~~L~~~g~~------~~~-~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~I 127 (390)
T 3okf_A 56 LLSLSAKQKVVIVTNHTVAP-LYAPAIISLLDHIGCQ------HAL-LELPDGEQYKTLETFNTVMSFLLEHNYSRDVVV 127 (390)
T ss_dssp GGCCCTTCEEEEEEETTTHH-HHHHHHHHHHHHHTCE------EEE-EEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEE
T ss_pred HHHhcCCCEEEEEECCcHHH-HHHHHHHHHHHHcCCe------EEE-EEECCCcCCchHHHHHHHHHHHHhcCCCcCcEE
Confidence 34455678999999877654 3778889999887732 221 22332 23456677777777766 678
Q ss_pred EEEeCh--hhHHHHHHHHHhcCCcccceEEEeec
Q psy17441 182 LMYASK--QDAEIIFKDAQYLNMTETGYVWIVTE 213 (458)
Q Consensus 182 il~~~~--~~~~~il~~a~~~g~~~~~~~wi~t~ 213 (458)
|-.+.+ -|...++......|+. ++-|-|.
T Consensus 128 IAvGGGsv~D~ak~~Aa~~~rgip---~I~IPTT 158 (390)
T 3okf_A 128 IALGGGVIGDLVGFAAACYQRGVD---FIQIPTT 158 (390)
T ss_dssp EEEESHHHHHHHHHHHHHBTTCCE---EEEEECS
T ss_pred EEECCcHHhhHHHHHHHHhcCCCC---EEEeCCC
Confidence 777655 3555555554555543 5656665
No 261
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=37.93 E-value=33 Score=30.90 Aligned_cols=85 Identities=6% Similarity=-0.047 Sum_probs=50.4
Q ss_pred HHHHhcCCeEEEEEEecC--cchh-HHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEe
Q psy17441 109 ELLKHFNYMKVIFIHSSD--TDGR-ALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYA 185 (458)
Q Consensus 109 ~ll~~~~w~~v~ii~~~d--~~g~-~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~ 185 (458)
.-++.-+-+.|+++..+. .|.. .....+++.+++.|.. +.. .....+.......++.+.+.+.|.||+..
T Consensus 6 r~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~------~~~-~~~~~~~~~~~~~~~~l~~~~vdGiIi~~ 78 (301)
T 3miz_A 6 RLIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKT------ILI-ANTGGSSEREVEIWKMFQSHRIDGVLYVT 78 (301)
T ss_dssp ------CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCE------EEE-EECTTCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCE------EEE-EeCCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 334444557899988653 4666 8899999999998832 221 11222334456677788888999998876
Q ss_pred ChhhHHHHHHHHHhcCC
Q psy17441 186 SKQDAEIIFKDAQYLNM 202 (458)
Q Consensus 186 ~~~~~~~il~~a~~~g~ 202 (458)
..... .++.+.+.|+
T Consensus 79 ~~~~~--~~~~~~~~~i 93 (301)
T 3miz_A 79 MYRRI--VDPESGDVSI 93 (301)
T ss_dssp EEEEE--CCCCCTTCCC
T ss_pred CCccH--HHHHHHhCCC
Confidence 54332 3444444554
No 262
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=37.64 E-value=10 Score=33.17 Aligned_cols=38 Identities=11% Similarity=0.041 Sum_probs=29.2
Q ss_pred HHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeee
Q psy17441 38 KFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGIS 78 (458)
Q Consensus 38 ~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~ 78 (458)
..+.+.+|+.|+| |..|+ =...+..+++.+++|+||.+
T Consensus 24 ~~~~k~kiI~llG--pPGsG-KgTqa~~L~~~~g~~hIstG 61 (217)
T 3umf_A 24 QKLAKAKVIFVLG--GPGSG-KGTQCEKLVQKFHFNHLSSG 61 (217)
T ss_dssp CCTTSCEEEEEEC--CTTCC-HHHHHHHHHHHHCCEEECHH
T ss_pred hhccCCcEEEEEC--CCCCC-HHHHHHHHHHHHCCceEcHH
Confidence 3344567999999 77776 55667889999999999864
No 263
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=37.55 E-value=20 Score=31.64 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEe
Q psy17441 30 ILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIG 76 (458)
Q Consensus 30 ~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is 76 (458)
.......++.|.+.|+.+|+- + |.. ....+..+-+..++|+|+
T Consensus 62 ~~~l~~~~~~L~~~g~~~ivi--a-CNT-a~~~~~~l~~~~~iPvi~ 104 (231)
T 3ojc_A 62 AQLLSNAAISLKHAGAEVIVV--C-TNT-MHKVADDIEAACGLPLLH 104 (231)
T ss_dssp HHHHHHHHHHHHHHTCCEEEE--C-SSG-GGGGHHHHHHHHCSCBCC
T ss_pred HHHHHHHHHHHHhcCCCEEEE--e-CCc-hHHHHHHHHHhCCCCEec
Confidence 345566677777789988886 3 442 333446666677888875
No 264
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=37.34 E-value=1.8e+02 Score=25.59 Aligned_cols=78 Identities=8% Similarity=0.023 Sum_probs=48.4
Q ss_pred CeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHH
Q psy17441 116 YMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEII 193 (458)
Q Consensus 116 w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~i 193 (458)
-++|+++..+ ++|.......+++.+++.|. .+.. .....+.......++.+.+.+++.||+....... ..
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~ 79 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEKNGY------RILL-CNTESDLARSRSCLTLLSGKMVDGVITMDALSEL-PE 79 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC------EEEE-EECTTCHHHHHHHTHHHHTTCCSEEEECCCGGGH-HH
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHHcCC------EEEE-EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCh-HH
Confidence 3578888764 56788889999999998883 2221 1112222334556777778889999987543322 34
Q ss_pred HHHHHhcCC
Q psy17441 194 FKDAQYLNM 202 (458)
Q Consensus 194 l~~a~~~g~ 202 (458)
++.+. .|.
T Consensus 80 ~~~l~-~~i 87 (285)
T 3c3k_A 80 LQNII-GAF 87 (285)
T ss_dssp HHHHH-TTS
T ss_pred HHHHh-cCC
Confidence 45554 554
No 265
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=37.06 E-value=1.1e+02 Score=27.03 Aligned_cols=80 Identities=5% Similarity=-0.045 Sum_probs=48.8
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEE-eCCCcccHHHHHHHHHhccCeEEEEEeChhh-HHH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIE-FEPGLTTFKDQLYEMKNAQARVYLMYASKQD-AEI 192 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~-~~~~~~d~~~~l~~ik~~~~~viil~~~~~~-~~~ 192 (458)
+.|+++..+ +.|.......+++.+++.|..+ ..... ...+.......++.+.+.+.|.||+...... ...
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~ 75 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSV------DIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVM 75 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCE------EEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEE------EEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHH
Confidence 357777754 5678888899999999888332 11110 1112223345567777788999888654332 234
Q ss_pred HHHHHHhcCC
Q psy17441 193 IFKDAQYLNM 202 (458)
Q Consensus 193 il~~a~~~g~ 202 (458)
.++++.+.|+
T Consensus 76 ~~~~~~~~~i 85 (288)
T 1gud_A 76 PVARAWKKGI 85 (288)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHCCC
Confidence 5667776665
No 266
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=34.91 E-value=88 Score=27.75 Aligned_cols=79 Identities=4% Similarity=-0.032 Sum_probs=49.3
Q ss_pred eEEEEEEec------CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhH
Q psy17441 117 MKVIFIHSS------DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDA 190 (458)
Q Consensus 117 ~~v~ii~~~------d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~ 190 (458)
+.|+++..+ ++|.......+++.+++.|. .+.. .....+.......++.+.+.+.+.||+.......
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 77 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNY------FVLP-FPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYND 77 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTC------EEEE-CCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTC
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCC------EEEE-EeCCCchHHHHHHHHHHHcCCCCEEEEeecCCCc
Confidence 467777643 46788889999999998882 2211 1111223334567788888889999887543322
Q ss_pred HHHHHHHHhcCCc
Q psy17441 191 EIIFKDAQYLNMT 203 (458)
Q Consensus 191 ~~il~~a~~~g~~ 203 (458)
..++.+.+.|+.
T Consensus 78 -~~~~~l~~~~iP 89 (287)
T 3bbl_A 78 -PRVQFLLKQKFP 89 (287)
T ss_dssp -HHHHHHHHTTCC
T ss_pred -HHHHHHHhcCCC
Confidence 345666666653
No 267
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=34.83 E-value=98 Score=28.19 Aligned_cols=79 Identities=8% Similarity=-0.054 Sum_probs=48.5
Q ss_pred CeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHH
Q psy17441 116 YMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEII 193 (458)
Q Consensus 116 w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~i 193 (458)
-..++++..+ +.|.......+++.+++.|. .+... ....+.......++.+.+.+.+.||+....... ..
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~ 131 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATMYKY------NIILS-NSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EH 131 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTC------EEEEE-ECCSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCC------EEEEE-eCCCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HH
Confidence 3578988754 56888889999999998883 22111 111122233455666667789988887644332 45
Q ss_pred HHHHHhcCC
Q psy17441 194 FKDAQYLNM 202 (458)
Q Consensus 194 l~~a~~~g~ 202 (458)
++.+.+.|+
T Consensus 132 ~~~l~~~~i 140 (332)
T 2hsg_A 132 VEELKKSPV 140 (332)
T ss_dssp HHHHTTSSS
T ss_pred HHHHHhCCC
Confidence 566655554
No 268
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=34.27 E-value=1.3e+02 Score=27.83 Aligned_cols=77 Identities=8% Similarity=0.123 Sum_probs=47.3
Q ss_pred eEEEEEEec-------CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCc-ccHHHHHHHHHhccCeEEEEEeChh
Q psy17441 117 MKVIFIHSS-------DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGL-TTFKDQLYEMKNAQARVYLMYASKQ 188 (458)
Q Consensus 117 ~~v~ii~~~-------d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~-~d~~~~l~~ik~~~~~viil~~~~~ 188 (458)
+.|+++..+ +.|.......+++.++ |. +..+ . ....+. ......++.+.+.+.|.||+.....
T Consensus 69 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~--g~----~~~~--~-~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 139 (366)
T 3h5t_A 69 GAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG--DT----QLTL--I-PASPASSVDHVSAQQLVNNAAVDGVVIYSVAK 139 (366)
T ss_dssp CEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS--SC----EEEE--E-ECCCCTTCCHHHHHHHHHTCCCSCEEEESCCT
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHh--hC----CEEE--E-EcCCCccHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 458888865 4566677788888777 51 2221 1 112122 2466778888888999999876533
Q ss_pred hHHHHHHHHHhcCCc
Q psy17441 189 DAEIIFKDAQYLNMT 203 (458)
Q Consensus 189 ~~~~il~~a~~~g~~ 203 (458)
. ...++.+.+.|+.
T Consensus 140 ~-~~~~~~l~~~~iP 153 (366)
T 3h5t_A 140 G-DPHIDAIRARGLP 153 (366)
T ss_dssp T-CHHHHHHHHHTCC
T ss_pred C-hHHHHHHHHCCCC
Confidence 2 2455666666653
No 269
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=34.12 E-value=2.2e+02 Score=24.36 Aligned_cols=89 Identities=7% Similarity=-0.087 Sum_probs=57.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEE--EeChh----hH
Q psy17441 117 MKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLM--YASKQ----DA 190 (458)
Q Consensus 117 ~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil--~~~~~----~~ 190 (458)
.++.+-....+...-+..-+...++.+| ..+. ... .+......++.+++.++++|.+ .+... ..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G------~~Vi---~LG-~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~ 162 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANG------FQIV---DLG-VDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQ 162 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTS------CEEE---ECC-SSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCC------CeEE---EcC-CCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHH
Confidence 4566666555555555677778888888 2222 122 2345677788899999999998 54442 35
Q ss_pred HHHHHHHHhcCCcccceEEEeeccc
Q psy17441 191 EIIFKDAQYLNMTETGYVWIVTEQA 215 (458)
Q Consensus 191 ~~il~~a~~~g~~~~~~~wi~t~~~ 215 (458)
..++++.++.|+..+-.+|+.....
T Consensus 163 ~~~i~~l~~~~~~~~v~v~vGG~~~ 187 (215)
T 3ezx_A 163 KDLMDRLNEEKLRDSVKCMFGGAPV 187 (215)
T ss_dssp HHHHHHHHHTTCGGGSEEEEESSSC
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCC
Confidence 6777888888874333566665543
No 270
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=33.68 E-value=43 Score=29.51 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=33.9
Q ss_pred CCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 397 TKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 397 ~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
.+|++++||+ +.++|+..++....++++.- . ...+...+.+.++++++|.
T Consensus 137 ~~i~~~~dL~------g~~i~~~~g~~~~~~l~~~~--~---~~~~i~~~~~~~~~~~~l~ 186 (272)
T 2pvu_A 137 SPVKNALDLK------GKTIGVQNATTGQEAAEKLF--G---KGPHIKKFETTVVAIMELL 186 (272)
T ss_dssp CCCCSGGGGT------TSCEEEETTSHHHHHHHHHH--C---SSTTEEEESSHHHHHHHHH
T ss_pred CCCCCHHHhC------CCeEEEEcCchHHHHHHHhc--C---CCCeEEEcCCHHHHHHHHH
Confidence 3499999997 67899999999988877530 0 0111123567777777765
No 271
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=33.46 E-value=54 Score=27.06 Aligned_cols=62 Identities=13% Similarity=0.003 Sum_probs=38.1
Q ss_pred eEEEEEEecCcc--hh---HHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEe
Q psy17441 117 MKVIFIHSSDTD--GR---ALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYA 185 (458)
Q Consensus 117 ~~v~ii~~~d~~--g~---~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~ 185 (458)
-+++||...|+- |+ .....+.+.+++.|. .+.....++.+ +.+.+.+++..+.++|+|+..+
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~------~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittG 74 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGF------SSAQPEVVADG-SPVGEALRKAIDDDVDVILTSG 74 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTC------EECCCEEECSS-HHHHHHHHHHHHTTCSEEEEES
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCC------EEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECC
Confidence 467777766542 21 235667788888773 33333334555 6677777776655789988874
No 272
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=33.30 E-value=1.1e+02 Score=25.29 Aligned_cols=62 Identities=5% Similarity=-0.075 Sum_probs=36.7
Q ss_pred EEEEEEecCcch----------hHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHh-ccCeEEEEEe
Q psy17441 118 KVIFIHSSDTDG----------RALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKN-AQARVYLMYA 185 (458)
Q Consensus 118 ~v~ii~~~d~~g----------~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~-~~~~viil~~ 185 (458)
+++||...|.-. ......+.+.+++.| ..+.....++.+.+.+...+.+... .++|+|+..+
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G------~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENG------HKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTT------CEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCC------CEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 688887544211 122356788888887 3344444455555556666665443 5688888874
No 273
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=32.77 E-value=1.8e+02 Score=26.82 Aligned_cols=82 Identities=6% Similarity=-0.066 Sum_probs=50.0
Q ss_pred HHHhcCCeEEEEEEecCcc---hhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeC
Q psy17441 110 LLKHFNYMKVIFIHSSDTD---GRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYAS 186 (458)
Q Consensus 110 ll~~~~w~~v~ii~~~d~~---g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~ 186 (458)
.+..+--+++.+|+.-..- +......+.+.+++.| ..+... ......+.....+++...+.+.|++.+-
T Consensus 18 ~~~~m~m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g------~~~~~~--~t~~~~~a~~~~~~~~~~~~d~vvv~GG 89 (337)
T 2qv7_A 18 RGSHMMRKRARIIYNPTSGKEQFKRELPDALIKLEKAG------YETSAY--ATEKIGDATLEAERAMHENYDVLIAAGG 89 (337)
T ss_dssp -CCCSCCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTT------EEEEEE--ECCSTTHHHHHHHHHTTTTCSEEEEEEC
T ss_pred cccccccceEEEEECCCCCCCchHHHHHHHHHHHHHcC------CeEEEE--EecCcchHHHHHHHHhhcCCCEEEEEcC
Confidence 3333334788888855432 2355678888998877 222221 2222234555556666667888888888
Q ss_pred hhhHHHHHHHHHh
Q psy17441 187 KQDAEIIFKDAQY 199 (458)
Q Consensus 187 ~~~~~~il~~a~~ 199 (458)
......+++.+.+
T Consensus 90 DGTv~~v~~~l~~ 102 (337)
T 2qv7_A 90 DGTLNEVVNGIAE 102 (337)
T ss_dssp HHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHh
Confidence 8777777877743
No 274
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=32.24 E-value=1.8e+02 Score=22.78 Aligned_cols=86 Identities=6% Similarity=-0.073 Sum_probs=51.7
Q ss_pred EEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhh----HHHH
Q psy17441 118 KVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQD----AEII 193 (458)
Q Consensus 118 ~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~----~~~i 193 (458)
+|.+-....+...-...-+...++..|. .+.+.-. .....+.++.+++.++++|.+.+.... ...+
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~------~Vi~lG~----~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~ 74 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGF------NVVNIGV----LSPQELFIKAAIETKADAILVSSLYGQGEIDCKGL 74 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTC------EEEEEEE----EECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCC------EEEECCC----CCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHH
Confidence 5555555555444556677778888873 3222111 223556777788888999988765532 4556
Q ss_pred HHHHHhcCCcccceEEEeecc
Q psy17441 194 FKDAQYLNMTETGYVWIVTEQ 214 (458)
Q Consensus 194 l~~a~~~g~~~~~~~wi~t~~ 214 (458)
+++.++.|+.. -.+|+....
T Consensus 75 i~~l~~~g~~~-i~v~vGG~~ 94 (137)
T 1ccw_A 75 RQKCDEAGLEG-ILLYVGGNI 94 (137)
T ss_dssp HHHHHHTTCTT-CEEEEEESC
T ss_pred HHHHHhcCCCC-CEEEEECCC
Confidence 66777777642 356665543
No 275
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=31.90 E-value=43 Score=31.80 Aligned_cols=94 Identities=6% Similarity=-0.037 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEE-EeCCCcccHHHHHHHHHhccCeEEEE
Q psy17441 105 DVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVI-EFEPGLTTFKDQLYEMKNAQARVYLM 183 (458)
Q Consensus 105 ~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~-~~~~~~~d~~~~l~~ik~~~~~viil 183 (458)
+.+.+.++.+|.+|+.++++....+ ..+.+.+.++. . ..+.. .-.+..+.+.+.++.+++.++|.||-
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~~--------~-~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 94 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIEV--------A-IWHDEVVMHVPIEVAERARAVATDNEIDLLVC 94 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSCC--------S-EEECCCCTTCBHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcCC--------C-EEEcceecCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4467788999999999998776443 34556555552 1 11111 11123556777778888899999988
Q ss_pred EeChh--hHHHHHHHHHhcCCcccceEEEeecc
Q psy17441 184 YASKQ--DAEIIFKDAQYLNMTETGYVWIVTEQ 214 (458)
Q Consensus 184 ~~~~~--~~~~il~~a~~~g~~~~~~~wi~t~~ 214 (458)
.+-+. |+..++.. ..++. ++-|-|..
T Consensus 95 vGGGs~iD~aK~iA~--~~~~P---~i~IPTTa 122 (364)
T 3iv7_A 95 VGGGSTIGLAKAIAM--TTALP---IVAIPTTY 122 (364)
T ss_dssp EESHHHHHHHHHHHH--HHCCC---EEEEECSS
T ss_pred eCCcHHHHHHHHHHh--ccCCC---EEEEcCCc
Confidence 76664 34444432 23332 55555554
No 276
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=31.90 E-value=1.8e+02 Score=22.68 Aligned_cols=48 Identities=10% Similarity=-0.060 Sum_probs=26.3
Q ss_pred HHHHHHHHHhccCeEEEEEeC--hhhHHHHHHHHHhcCCcccceEEEeec
Q psy17441 166 FKDQLYEMKNAQARVYLMYAS--KQDAEIIFKDAQYLNMTETGYVWIVTE 213 (458)
Q Consensus 166 ~~~~l~~ik~~~~~viil~~~--~~~~~~il~~a~~~g~~~~~~~wi~t~ 213 (458)
-.+.+..+++..+|+|+++.. .-+...++++.++..-...-.+.+.|.
T Consensus 46 g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa 95 (134)
T 3to5_A 46 GLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITA 95 (134)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEES
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEEC
Confidence 345555666667777777633 345666777666544322223444443
No 277
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=31.84 E-value=71 Score=28.87 Aligned_cols=64 Identities=9% Similarity=-0.024 Sum_probs=43.3
Q ss_pred eEEEEEEec---C-cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh
Q psy17441 117 MKVIFIHSS---D-TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK 187 (458)
Q Consensus 117 ~~v~ii~~~---d-~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~ 187 (458)
.+|++++.+ | .|.....+.+++.+++.|+ .+..... ..+..+..+.++.+.+.+.+.||+.+..
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~------~~~~~~~-~~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDV------DVVLEEG-VNSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHHHHHSCC------EEEEECC-CCSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCC------eEEEEeC-CCCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 578898863 3 6788888999999998873 2221111 1223456677888888899999986543
No 278
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=31.51 E-value=65 Score=28.32 Aligned_cols=76 Identities=5% Similarity=-0.158 Sum_probs=37.6
Q ss_pred EEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHHHHHHH
Q psy17441 119 VIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKD 196 (458)
Q Consensus 119 v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~ 196 (458)
|+++..+ ++|.......+++.+++.|. .+.. .....+.......++.+.+.+.+.||+....... ..++.
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~ 73 (276)
T 2h0a_A 2 VSVLLPFVATEFYRRLVEGIEGVLLEQRY------DLAL-FPILSLARLKRYLENTTLAYLTDGLILASYDLTE-RFEEG 73 (276)
T ss_dssp EEEEECCSCCHHHHHHHHHHHHHHGGGTC------EEEE-CCCCSCCCCC---------CCCSEEEEESCCCC-------
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCC------EEEE-EeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-HHHHH
Confidence 5677654 56788889999999999882 2211 1111122334566777777889999987654332 34555
Q ss_pred HHhcCC
Q psy17441 197 AQYLNM 202 (458)
Q Consensus 197 a~~~g~ 202 (458)
+.+.|+
T Consensus 74 ~~~~~i 79 (276)
T 2h0a_A 74 RLPTER 79 (276)
T ss_dssp CCSCSS
T ss_pred HhhcCC
Confidence 555554
No 279
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=31.39 E-value=1.1e+02 Score=27.39 Aligned_cols=65 Identities=9% Similarity=0.058 Sum_probs=43.3
Q ss_pred eEEEEEE-ecCcchhHHHHHHHHhhhccCC---cceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeC
Q psy17441 117 MKVIFIH-SSDTDGRALLGRFQTTSQNQED---DVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYAS 186 (458)
Q Consensus 117 ~~v~ii~-~~d~~g~~~~~~l~~~l~~~gi---~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~ 186 (458)
+.|+++- .+++|.....+.+++.++++|. .+ .+.. ..-..+.+.....++++.+.++|.||+.+.
T Consensus 3 ~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy~g~~v----~l~~-~~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 3 AKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQV----KIDF-MNSEGDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGE----EEEE-EECTTCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred eEEEEEEccCChhHHHHHHHHHHHHHHcCCCCCce----EEEE-ecCCCCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 5688872 3356788889999999999884 22 2211 111223444567788888889999998753
No 280
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=31.30 E-value=1.8e+02 Score=23.43 Aligned_cols=87 Identities=9% Similarity=-0.041 Sum_probs=47.1
Q ss_pred EEEEEEecC-cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh--hhH--HH
Q psy17441 118 KVIFIHSSD-TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK--QDA--EI 192 (458)
Q Consensus 118 ~v~ii~~~d-~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~--~~~--~~ 192 (458)
++.|+|... ...+..++.+.+.+++.|+.+ . .++....+....+.++.+ .|.|++.++. ... ..
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v------~---~~~~~~~~~~~~~~~~~~--~d~ii~Gspty~g~~p~~~ 70 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVKTGVAV------E---MVDLRAVDPQELIEAVSS--ARGIVLGTPPSQPSEAVAT 70 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHHTTCCE------E---EEETTTCCHHHHHHHHHH--CSEEEEECCBSSCCHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhCCCeE------E---EEECCCCCHHHHHHHHHh--CCEEEEEcCCcCCchhHHH
Confidence 467777543 234467888888888777322 1 122333455555555554 5677766543 122 35
Q ss_pred HHHHHHhcCCcccceEEEeeccc
Q psy17441 193 IFKDAQYLNMTETGYVWIVTEQA 215 (458)
Q Consensus 193 il~~a~~~g~~~~~~~wi~t~~~ 215 (458)
++.......+.+.....+.+.+|
T Consensus 71 fl~~l~~~~l~gk~v~~fgs~g~ 93 (161)
T 3hly_A 71 ALSTIFAAAHNKQAIGLFDSYGG 93 (161)
T ss_dssp HHHHHHHHCCTTSEEEEECCCCS
T ss_pred HHHHHHhhhhCCCEEEEEEcCCC
Confidence 66666554455543444444444
No 281
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=30.88 E-value=53 Score=29.20 Aligned_cols=81 Identities=9% Similarity=-0.038 Sum_probs=49.3
Q ss_pred cCCeEEEEEEe-c--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhH
Q psy17441 114 FNYMKVIFIHS-S--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDA 190 (458)
Q Consensus 114 ~~w~~v~ii~~-~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~ 190 (458)
-+-+.|+++.. + +.|.......+++.+++.|..+ .+.. ... +..+....++.+.+.+++.||+.......
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~----~~~~-~~~--~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 81 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNY----NVVI-CPY--KTDCLHLEKGISKENSFDAAIIANISNYD 81 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCS----EEEE-EEE--CTTCGGGCGGGSTTTCCSEEEESSCCHHH
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeE----EEEe-cCC--CchhHHHHHHHHhccCCCEEEEecCCccc
Confidence 34467999987 3 4578888999999999998544 1111 111 22233455666777889999987665444
Q ss_pred HHHHHHHHhcCC
Q psy17441 191 EIIFKDAQYLNM 202 (458)
Q Consensus 191 ~~il~~a~~~g~ 202 (458)
..+.+ +.+.|+
T Consensus 82 ~~~~~-~~~~~i 92 (289)
T 3g85_A 82 LEYLN-KASLTL 92 (289)
T ss_dssp HHHHH-HCCCSS
T ss_pred HHHHH-hccCCC
Confidence 33333 334444
No 282
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=30.34 E-value=1.5e+02 Score=26.67 Aligned_cols=113 Identities=13% Similarity=0.076 Sum_probs=66.8
Q ss_pred HHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEE
Q psy17441 105 DVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMY 184 (458)
Q Consensus 105 ~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~ 184 (458)
..++.-....|-..+.++.+..-++ +..+.++..-+..++.| .... |- .+.+ ++.+.+..+++.|++.
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f~-Gs~~~L~~ir~~v~lPV------l~Kd-fi--~d~~--qi~ea~~~GAD~VlLi 149 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSFQ-GAPEFLTAARQACSLPA------LRKD-FL--FDPY--QVYEARSWGADCILII 149 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTTC-CCHHHHHHHHHTSSSCE------EEES-CC--CSTH--HHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHCCCCEEEEeccccccC-CCHHHHHHHHHhcCCCE------EECC-cc--CCHH--HHHHHHHcCCCEEEEc
Confidence 4567777888999999998666443 34455555444433222 1111 11 1122 4667888999999998
Q ss_pred eC---hhhHHHHHHHHHhcCCcccceEEEeeccccc---cCCCCCeeEEEEecCC
Q psy17441 185 AS---KQDAEIIFKDAQYLNMTETGYVWIVTEQALT---AKNVPVGIIGLKLVNA 233 (458)
Q Consensus 185 ~~---~~~~~~il~~a~~~g~~~~~~~wi~t~~~~~---~~~~~~g~~g~~~~~~ 233 (458)
+. ..+...++..++++||. +.+-.+.... .......++|+...+.
T Consensus 150 ~a~L~~~~l~~l~~~a~~lGl~----~lvevh~~eEl~~A~~~ga~iIGinnr~l 200 (272)
T 3tsm_A 150 MASVDDDLAKELEDTAFALGMD----ALIEVHDEAEMERALKLSSRLLGVNNRNL 200 (272)
T ss_dssp TTTSCHHHHHHHHHHHHHTTCE----EEEEECSHHHHHHHTTSCCSEEEEECBCT
T ss_pred ccccCHHHHHHHHHHHHHcCCe----EEEEeCCHHHHHHHHhcCCCEEEECCCCC
Confidence 64 35678899999999985 3333332111 1223445777765543
No 283
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=30.24 E-value=37 Score=31.00 Aligned_cols=44 Identities=16% Similarity=0.315 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEee
Q psy17441 31 LTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGI 77 (458)
Q Consensus 31 ~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~ 77 (458)
......++.|.+.++.+|+- .|.+..+.++..+-+..++|+|..
T Consensus 71 ~~~~~~~~~L~~~g~d~IVI---aCNTas~~~l~~lr~~~~iPVigi 114 (286)
T 2jfq_A 71 QYTVEIARKLMEFDIKMLVI---ACNTATAVALEYLQKTLSISVIGV 114 (286)
T ss_dssp HHHHHHHHHHTTSCCSEEEE---CCHHHHHHHHHHHHHHCSSEEEES
T ss_pred HHHHHHHHHHHHCCCCEEEE---eCCchhHHHHHHHHHhCCCCEEec
Confidence 34455567776788988885 354212224666667788998863
No 284
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=30.18 E-value=1e+02 Score=26.64 Aligned_cols=53 Identities=15% Similarity=-0.021 Sum_probs=33.9
Q ss_pred ccccchhHHHHHHHhhccCCCCCCC----CchhhHHHHHHHHHHH-HHHHhhccccee
Q psy17441 335 ALNLSSAIWFAWGVLLNSGIGEGTP----RSFSARVLGMVWAGFA-MIIVASYTANLA 387 (458)
Q Consensus 335 ~~~~~~~~w~~~~~l~~~g~~~~~p----~s~~~Ri~~~~w~~~~-~i~~~~yta~l~ 387 (458)
-.++.+++|..+..+++.|.++... .+.-+.+....|.+.+ +++++.+.|-+.
T Consensus 163 F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~ 220 (229)
T 4dxw_A 163 WGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILV 220 (229)
T ss_dssp TSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999887544211 1112445444454444 788888887653
No 285
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=29.41 E-value=1.3e+02 Score=24.98 Aligned_cols=61 Identities=10% Similarity=-0.014 Sum_probs=30.7
Q ss_pred EEEEEEecCc--chh---HHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEe
Q psy17441 118 KVIFIHSSDT--DGR---ALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYA 185 (458)
Q Consensus 118 ~v~ii~~~d~--~g~---~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~ 185 (458)
+++||...|+ .|+ .....+.+.+++.| ..+.....++.+...+.+.+++..+ ++|+||..+
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G------~~v~~~~iv~Dd~~~I~~~l~~a~~-~~DlVittG 70 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHG------YQVRRGFVVMDDLDEIGWAFRVALE-VSDLVVSSG 70 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTT------CEEEEEEEECSCHHHHHHHHHHHHH-HCSEEEEES
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCC------CEEEEEEEeCCCHHHHHHHHHHHHh-cCCEEEEcC
Confidence 4566655443 121 33455666666666 2333333344444555555555543 367776653
No 286
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=28.87 E-value=27 Score=30.09 Aligned_cols=31 Identities=6% Similarity=-0.023 Sum_probs=24.5
Q ss_pred eEEEEEeCCCCCCCchHHHHHhhcccCCcEEeee
Q psy17441 45 VYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGIS 78 (458)
Q Consensus 45 V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~ 78 (458)
+..++| |..|+ =...+..+++.+++|+||.+
T Consensus 2 ~Iil~G--pPGsG-KgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLG--PPGAG-KGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEEC--STTSS-HHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEEC--CCCCC-HHHHHHHHHHHHCCeEEcHH
Confidence 456888 77776 55667889999999999865
No 287
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=28.53 E-value=1.1e+02 Score=24.82 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=17.7
Q ss_pred cHHHHHHHHHhcc--CeEEEEEeCh------hhHHHHHHHHHhcCC
Q psy17441 165 TFKDQLYEMKNAQ--ARVYLMYASK------QDAEIIFKDAQYLNM 202 (458)
Q Consensus 165 d~~~~l~~ik~~~--~~viil~~~~------~~~~~il~~a~~~g~ 202 (458)
.+...|..+++.. .++|++.--. .+...++....+.|.
T Consensus 61 ~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~~~~~~~~~~~l~~~gv 106 (167)
T 3guv_A 61 QFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYGV 106 (167)
T ss_dssp HHHHHHHHHHTCTTCCSEEEESCGGGTCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCccEEEEEeCchhcCCHHHHHHHHHHHHHCCC
Confidence 4555555555443 4555543211 234444555555554
No 288
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=28.38 E-value=1.3e+02 Score=26.49 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=42.9
Q ss_pred CeEEEEEEec-CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh
Q psy17441 116 YMKVIFIHSS-DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK 187 (458)
Q Consensus 116 w~~v~ii~~~-d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~ 187 (458)
-.+|+++..+ ++|.......+++.+++.|. .+.. .....+.......++.+.+.+++.||+....
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 8 SNIIAFIVPDQNPFFTEVLTEISHECQKHHL------HVAV-ASSEENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHHGGGTC------EEEE-EECTTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCEEEEEECCCCchHHHHHHHHHHHHHHCCC------EEEE-EeCCCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 3578888764 56788889999999998883 2221 1112223334566777778889999887544
No 289
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=27.68 E-value=2.9e+02 Score=24.44 Aligned_cols=92 Identities=9% Similarity=0.038 Sum_probs=54.8
Q ss_pred EEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCch--hHHHHHHHHHHhcCC-------
Q psy17441 46 YAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYS--HQADVWVELLKHFNY------- 116 (458)
Q Consensus 46 ~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~--~~~~ai~~ll~~~~w------- 116 (458)
..++| +..| .....+...++|.+.-.-.+....+.. ...-|..|..- +...++.+.++--.-
T Consensus 139 L~l~~--l~gs-----~~~~~A~~~Gl~~~~E~FADR~Y~~dG--~LvpR~~~gAvi~d~~~~~~rv~~m~~~g~V~t~~ 209 (250)
T 2dfa_A 139 LPLVV--LPGT-----VYEEEARKAGLRVVLEAFPERAYLRSG--QLAPRSMPGSWITDPEEAARRALRMVLEGKVEALD 209 (250)
T ss_dssp CCEEE--CTTS-----HHHHHHHHTTCCEEEEECTTBCBCTTS--SBCCTTSTTCBCCCHHHHHHHHHHHHHTSEEEBTT
T ss_pred cEEEe--cCCh-----HHHHHHHHcCCcEEEEEeeccccCCCC--CEecCCCCCCccCCHHHHHHHHHHHHHCCCEEecC
Confidence 34566 5444 477788899999998666555443332 34455555443 333444444432211
Q ss_pred -eE------EEEEEecCcchhHHHHHHHHhhhccCCc
Q psy17441 117 -MK------VIFIHSSDTDGRALLGRFQTTSQNQEDD 146 (458)
Q Consensus 117 -~~------v~ii~~~d~~g~~~~~~l~~~l~~~gi~ 146 (458)
++ -.+++.|++-...++..+++.+++.||.
T Consensus 210 G~~i~i~adTiCvHGD~p~Av~~a~~iR~~L~~~gi~ 246 (250)
T 2dfa_A 210 GGEVAVRADTLCIHGDNPNAPEVARAVREALEQAGVE 246 (250)
T ss_dssp SSEEECCCSEEEEC---CCHHHHHHHHHHHHHTTTCE
T ss_pred CCEeeccCCEEEECCCCHHHHHHHHHHHHHHHHCCCe
Confidence 11 3467788888889999999999998843
No 290
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=27.52 E-value=89 Score=26.75 Aligned_cols=54 Identities=6% Similarity=0.101 Sum_probs=34.1
Q ss_pred CCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 396 KTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 396 ~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
..++++++||+ +.++|+..++....+++.. +++..-..+...+++.++.++.|.
T Consensus 137 ~~~i~~~~dL~------g~~i~~~~g~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~l~ 190 (259)
T 2v25_A 137 EKKYKSLADMK------GANIGVAQAATTKKAIGEA--AKKIGIDVKFSEFPDYPSIKAALD 190 (259)
T ss_dssp GGCCCSGGGCT------TCEEEEETTCSHHHHHHHH--HHHTTCCCEEEEESSHHHHHHHHH
T ss_pred CCCCCCHHHhC------CCEEEEecCCchHHHHHHH--HHhcCCceeEEEeCCHHHHHHHHH
Confidence 45789999997 6778999999888777652 000000001124677777777765
No 291
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=27.04 E-value=1.8e+02 Score=24.51 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=39.2
Q ss_pred cCCeEEEEEEecCcc--h---hHHHHHHHHhhhc---cCCcceeeEEEEEEEEeCCCcccHHHHHHHHHh-ccCeEEEEE
Q psy17441 114 FNYMKVIFIHSSDTD--G---RALLGRFQTTSQN---QEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKN-AQARVYLMY 184 (458)
Q Consensus 114 ~~w~~v~ii~~~d~~--g---~~~~~~l~~~l~~---~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~-~~~~viil~ 184 (458)
+.--+++||...|+- | ......+.+.+++ .| ..+.....++.+.+.+.+.+++..+ .++|+||..
T Consensus 12 ~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G------~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 12 DHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLG------GTISAYKIVPDEIEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp -CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTC------CEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred cCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCC------cEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEc
Confidence 344567777765541 1 1234567777776 55 3334444456566667777777654 368988887
Q ss_pred eC
Q psy17441 185 AS 186 (458)
Q Consensus 185 ~~ 186 (458)
+-
T Consensus 86 GG 87 (189)
T 1jlj_A 86 GG 87 (189)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 292
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=25.86 E-value=2.7e+02 Score=24.60 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEE
Q psy17441 105 DVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMY 184 (458)
Q Consensus 105 ~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~ 184 (458)
..++.-.... -.-+.++++.+ |..+..+.++..-+.-++.| -... | ....+ ++.+.+..++|+|++.
T Consensus 64 ~~iA~~y~~~-A~~IsVlTd~~-~F~gs~~dL~~ir~~v~lPv------LrKD-f--i~~~~--qi~ea~~~GAD~ilLi 130 (251)
T 1i4n_A 64 EDFIRMYDEL-ADAISILTEKH-YFKGDPAFVRAARNLTCRPI------LAKD-F--YIDTV--QVKLASSVGADAILII 130 (251)
T ss_dssp HHHHHHHHHH-CSEEEEECCCS-SSCCCTHHHHHHHTTCCSCE------EEEC-C--CCSTH--HHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHh-CCceEEEeccc-ccCCCHHHHHHHHHhCCCCE------EEee-C--CCCHH--HHHHHHHcCCCEEEEe
Confidence 3445444444 56788887665 43344455555444433222 1111 1 12233 3566899999999998
Q ss_pred eCh---hhHHHHHHHHHhcCCcccceEEEeeccccc---cCCC-CCeeEEEEecCC
Q psy17441 185 ASK---QDAEIIFKDAQYLNMTETGYVWIVTEQALT---AKNV-PVGIIGLKLVNA 233 (458)
Q Consensus 185 ~~~---~~~~~il~~a~~~g~~~~~~~wi~t~~~~~---~~~~-~~g~~g~~~~~~ 233 (458)
+.. .+...+++.|+++||. +.+-...... ...+ ..-++|+...+-
T Consensus 131 ~a~l~~~~l~~l~~~a~~lGl~----~lvEv~~~eE~~~A~~l~g~~iIGinnr~l 182 (251)
T 1i4n_A 131 ARILTAEQIKEIYEAAEELGMD----SLVEVHSREDLEKVFSVIRPKIIGINTRDL 182 (251)
T ss_dssp GGGSCHHHHHHHHHHHHTTTCE----EEEEECSHHHHHHHHTTCCCSEEEEECBCT
T ss_pred cccCCHHHHHHHHHHHHHcCCe----EEEEeCCHHHHHHHHhcCCCCEEEEeCccc
Confidence 765 5688899999999985 4444333221 1123 345777766543
No 293
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=25.73 E-value=1.1e+02 Score=29.36 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=49.4
Q ss_pred HHHHHHhcCCeEEEEEEecCcchh-HHHHHHHHhhhccCCcceeeEEEEEEE-EeCCCcccHHHHHHHHHhccCeEEEEE
Q psy17441 107 WVELLKHFNYMKVIFIHSSDTDGR-ALLGRFQTTSQNQEDDVEIKVQVEAVI-EFEPGLTTFKDQLYEMKNAQARVYLMY 184 (458)
Q Consensus 107 i~~ll~~~~w~~v~ii~~~d~~g~-~~~~~l~~~l~~~gi~v~~~~~v~~~~-~~~~~~~d~~~~l~~ik~~~~~viil~ 184 (458)
+.+.++ +| +++.+|+++..... +..+.+.+.++ |+.+ ..+.. .-.+..+.+.+.++.+++.++|.||-.
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~-----~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIav 113 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDV-----LEFGGIEPNPAYETLMNAVKLVREQKVTFLLAV 113 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEE-----EEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEE-----EEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEe
Confidence 455666 78 89999986654333 36788888886 5221 11110 111234556777788888999999977
Q ss_pred eCh--hhHHHHHHH
Q psy17441 185 ASK--QDAEIIFKD 196 (458)
Q Consensus 185 ~~~--~~~~~il~~ 196 (458)
+-+ -|+..++..
T Consensus 114 GGGsviD~AK~iA~ 127 (408)
T 1oj7_A 114 GGGSVLDGTKFIAA 127 (408)
T ss_dssp ESHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHH
Confidence 654 345555444
No 294
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=25.65 E-value=1.6e+02 Score=25.25 Aligned_cols=63 Identities=10% Similarity=0.004 Sum_probs=41.9
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeC
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYAS 186 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~ 186 (458)
+.|+++..+ ++|.......+++.+++.|. .+... ....+.....+.++.+.+.+.+.||+...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~------~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGY------DPIMM-ESQFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTC------EEEEE-ECTTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCC------EEEEE-eCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 467888754 56777888999999998883 22211 11223333456677788888999988764
No 295
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=25.50 E-value=1.2e+02 Score=27.31 Aligned_cols=68 Identities=9% Similarity=-0.059 Sum_probs=42.1
Q ss_pred eEEEEEE-ecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEE-eCCCcccHHHHHHHHHhccCeEEEEEeC
Q psy17441 117 MKVIFIH-SSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIE-FEPGLTTFKDQLYEMKNAQARVYLMYAS 186 (458)
Q Consensus 117 ~~v~ii~-~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~-~~~~~~d~~~~l~~ik~~~~~viil~~~ 186 (458)
.+|+|+- .+++.-....+.|++.|++.|..- +..+..... -..+........+++.+.++|+|+..+.
T Consensus 9 ~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~--g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~t 78 (302)
T 3lkv_A 9 AKVAVSQIVEHPALDATRQGLLDGLKAKGYEE--GKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHTTCCB--TTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEESH
T ss_pred ceEEEEEeecChhHHHHHHHHHHHHHhhCccc--CCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 5788874 445544566788999999887321 111222222 2224455667788888899999886543
No 296
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=25.41 E-value=2.4e+02 Score=21.93 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=14.7
Q ss_pred HHHHHHHhc--cCeEEEEEeC--hhhHHHHHHHHHhcC
Q psy17441 168 DQLYEMKNA--QARVYLMYAS--KQDAEIIFKDAQYLN 201 (458)
Q Consensus 168 ~~l~~ik~~--~~~viil~~~--~~~~~~il~~a~~~g 201 (458)
+.+..+++. .+++|+++.. ..+...++++.++..
T Consensus 72 ~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~ 109 (157)
T 3hzh_A 72 EAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFD 109 (157)
T ss_dssp HHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhC
Confidence 333444443 4455555432 223444455444433
No 297
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=25.24 E-value=2.2e+02 Score=21.41 Aligned_cols=69 Identities=7% Similarity=-0.014 Sum_probs=41.8
Q ss_pred HHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeC--hhhHHHHHHHHHhcCCcccceEEE
Q psy17441 133 LGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYAS--KQDAEIIFKDAQYLNMTETGYVWI 210 (458)
Q Consensus 133 ~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~--~~~~~~il~~a~~~g~~~~~~~wi 210 (458)
...+.+.+++.| ..+ ... .+....+..+++..+++|++... ..+...++++.++......-.+.+
T Consensus 19 ~~~l~~~l~~~g------~~v---~~~----~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (140)
T 3grc_A 19 ARLLNLMLEKGG------FDS---DMV----HSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVV 85 (140)
T ss_dssp HHHHHHHHHHTT------CEE---EEE----CSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEE
T ss_pred HHHHHHHHHHCC------CeE---EEE----CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEE
Confidence 456667777666 221 112 24567777788888999998744 346778888887733222224555
Q ss_pred eecc
Q psy17441 211 VTEQ 214 (458)
Q Consensus 211 ~t~~ 214 (458)
.++.
T Consensus 86 ~s~~ 89 (140)
T 3grc_A 86 VSAN 89 (140)
T ss_dssp ECTT
T ss_pred EecC
Confidence 5554
No 298
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=25.20 E-value=3.8e+02 Score=24.15 Aligned_cols=69 Identities=10% Similarity=-0.009 Sum_probs=45.1
Q ss_pred HhcCCeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh
Q psy17441 112 KHFNYMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK 187 (458)
Q Consensus 112 ~~~~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~ 187 (458)
+.-.-+.|+++..+ +.|.......+++.+++.|. .+.. .....+.......++.+.+.+.+.||+....
T Consensus 54 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 54 KVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGY------TLIL-GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp HHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTC------EEEE-EECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred ccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCC------EEEE-EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 33344679999854 56788889999999999883 2221 1112223334556777788889999987544
No 299
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=25.12 E-value=4.4e+02 Score=24.86 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=57.7
Q ss_pred HHHhcCCeEEEEEEecCcchhHHHHHHHHhhhcc------CCcceeeEEEEEEEEeCC-----CcccHHHHHHHHHhcc-
Q psy17441 110 LLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQ------EDDVEIKVQVEAVIEFEP-----GLTTFKDQLYEMKNAQ- 177 (458)
Q Consensus 110 ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~------gi~v~~~~~v~~~~~~~~-----~~~d~~~~l~~ik~~~- 177 (458)
+++.++.+++.++++.+.... ..+.+.+.+++. |+ .+. ...++. ..+.+.+..+.+++.+
T Consensus 30 ~~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~------~~~-~~~~~~gE~~k~~~~v~~~~~~~~~~~~ 101 (393)
T 1sg6_A 30 LISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSP------RLL-IYNRPPGEVSKSRQTKADIEDWMLSQNP 101 (393)
T ss_dssp HHHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCC------EEE-EEEECSSGGGSSHHHHHHHHHHHHTSSS
T ss_pred HHHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCc------eeE-EEEeCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 346678889999987654332 567777777665 42 221 123333 2345667777778777
Q ss_pred -C---eEEEEEeCh--hhHHHHHHHHHhcCCcccceEEEeecc
Q psy17441 178 -A---RVYLMYASK--QDAEIIFKDAQYLNMTETGYVWIVTEQ 214 (458)
Q Consensus 178 -~---~viil~~~~--~~~~~il~~a~~~g~~~~~~~wi~t~~ 214 (458)
+ +.||-.+-+ -|...++......|+. ++-|-|..
T Consensus 102 ~~~r~d~iIalGGGsv~D~ak~~Aa~~~rgip---~i~IPTTl 141 (393)
T 1sg6_A 102 PCGRDTVVIALGGGVIGDLTGFVASTYMRGVR---YVQVPTTL 141 (393)
T ss_dssp CCCTTCEEEEEESHHHHHHHHHHHHHGGGCCE---EEEEECSH
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhcCCCC---EEEECCch
Confidence 7 888877654 4566666655555553 66666654
No 300
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=25.09 E-value=1.3e+02 Score=26.76 Aligned_cols=79 Identities=14% Similarity=-0.002 Sum_probs=50.7
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCC--CcccHHHHHHHHHhccCeEEEEEeChhh-HH
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEP--GLTTFKDQLYEMKNAQARVYLMYASKQD-AE 191 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~--~~~d~~~~l~~ik~~~~~viil~~~~~~-~~ 191 (458)
.+|+++..+ +.|.......+++.+++.|. .+... .... +.......++.+.+.+++.||+...... ..
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~ 78 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGV------NLRVL-EAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYE 78 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTC------EEEEE-ECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSST
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCC------eEEEE-cCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHH
Confidence 578888755 56788889999999999883 22211 1122 3334556777777889999998755433 23
Q ss_pred HHHHHHHhcCCc
Q psy17441 192 IIFKDAQYLNMT 203 (458)
Q Consensus 192 ~il~~a~~~g~~ 203 (458)
..++++. .|+.
T Consensus 79 ~~~~~~~-~~iP 89 (304)
T 3o1i_D 79 HNLKSWV-GNTP 89 (304)
T ss_dssp TTHHHHT-TTSC
T ss_pred HHHHHHc-CCCC
Confidence 4466665 5653
No 301
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=25.06 E-value=1.7e+02 Score=26.49 Aligned_cols=65 Identities=6% Similarity=-0.023 Sum_probs=42.4
Q ss_pred CCeEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh
Q psy17441 115 NYMKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK 187 (458)
Q Consensus 115 ~w~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~ 187 (458)
.-..|+++..+ +.|.......+++.+++.|. .+.. .....+.......++.+.+.+.+.|| ....
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~------~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~ 125 (330)
T 3ctp_A 59 NSKTIGLMVPNISNPFFNQMASVIEEYAKNKGY------TLFL-CNTDDDKEKEKTYLEVLQSHRVAGII-ASRS 125 (330)
T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC------EEEE-EECTTCHHHHHHHHHHHHHTTCSEEE-EETC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCC------EEEE-EeCCCChHHHHHHHHHHHhCCCCEEE-ECCC
Confidence 34679999864 55778888999999998883 2221 11122233345667777788899999 6543
No 302
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=25.02 E-value=2.1e+02 Score=21.08 Aligned_cols=69 Identities=14% Similarity=0.052 Sum_probs=43.1
Q ss_pred HHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeC--hhhHHHHHHHHHhcCCcccceEEE
Q psy17441 133 LGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYAS--KQDAEIIFKDAQYLNMTETGYVWI 210 (458)
Q Consensus 133 ~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~--~~~~~~il~~a~~~g~~~~~~~wi 210 (458)
...+.+.+++.| ..+ ... .+..+.++.+++..+++|++... ..+...++++.++......-.+.+
T Consensus 16 ~~~l~~~L~~~g------~~v---~~~----~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 82 (127)
T 3i42_A 16 AETFKELLEMLG------FQA---DYV----MSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVA 82 (127)
T ss_dssp HHHHHHHHHHTT------EEE---EEE----SSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEE
T ss_pred HHHHHHHHHHcC------CCE---EEE----CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEE
Confidence 566777777766 221 122 24567777788888999999854 456788888888763222224555
Q ss_pred eecc
Q psy17441 211 VTEQ 214 (458)
Q Consensus 211 ~t~~ 214 (458)
.++.
T Consensus 83 ~s~~ 86 (127)
T 3i42_A 83 VSGF 86 (127)
T ss_dssp EECC
T ss_pred EECC
Confidence 5544
No 303
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=24.49 E-value=2.4e+02 Score=25.33 Aligned_cols=79 Identities=6% Similarity=-0.066 Sum_probs=44.2
Q ss_pred EEEEEEecCc----chhHHHHHHHHhhhc-------cCCcceeeEEEEEEEEeCC-CcccHHHHHHHHHhccCeEEEEEe
Q psy17441 118 KVIFIHSSDT----DGRALLGRFQTTSQN-------QEDDVEIKVQVEAVIEFEP-GLTTFKDQLYEMKNAQARVYLMYA 185 (458)
Q Consensus 118 ~v~ii~~~d~----~g~~~~~~l~~~l~~-------~gi~v~~~~~v~~~~~~~~-~~~d~~~~l~~ik~~~~~viil~~ 185 (458)
+|+++..... +|......++.++++ .| ..+.....-.. +.......++++.+.+.+.||...
T Consensus 4 ~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G------~~l~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~ 77 (346)
T 1usg_A 4 KVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKG------DKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHL 77 (346)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTT------BCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCS
T ss_pred EEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCC------eEEEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEcCC
Confidence 6788876642 566667777777765 33 22222222111 223344566677667888887654
Q ss_pred ChhhHHHHHHHHHhcCC
Q psy17441 186 SKQDAEIIFKDAQYLNM 202 (458)
Q Consensus 186 ~~~~~~~il~~a~~~g~ 202 (458)
.......+...+.+.++
T Consensus 78 ~s~~~~~~~~~~~~~~i 94 (346)
T 1usg_A 78 CSSSTQPASDIYEDEGI 94 (346)
T ss_dssp SHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHCCC
Confidence 44545555666666554
No 304
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=24.44 E-value=2e+02 Score=26.94 Aligned_cols=89 Identities=10% Similarity=-0.049 Sum_probs=53.2
Q ss_pred CeEEEEEEec----CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhhHH
Q psy17441 116 YMKVIFIHSS----DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAE 191 (458)
Q Consensus 116 w~~v~ii~~~----d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~~~ 191 (458)
-.+|++|+.+ ..|.....+.+++..++.|.. ..+...... .+..++.+.++++.+.+.+.||+.+.. ...
T Consensus 26 ~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~----~~~~~~e~~-~~~~d~~~~l~~l~~~g~d~Ii~~g~~-~~~ 99 (356)
T 3s99_A 26 KLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDK----VETTFLENV-AEGADAERSIKRIARAGNKLIFTTSFG-YMD 99 (356)
T ss_dssp CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTT----EEEEEECSC-CTTHHHHHHHHHHHHTTCSEEEECSGG-GHH
T ss_pred CCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCc----eEEEEEecC-CCHHHHHHHHHHHHHCCCCEEEECCHH-HHH
Confidence 3689999964 246667778888777765511 222222211 133578889999999999988776433 334
Q ss_pred HHHHHHHhcCCcccceEEEeecc
Q psy17441 192 IIFKDAQYLNMTETGYVWIVTEQ 214 (458)
Q Consensus 192 ~il~~a~~~g~~~~~~~wi~t~~ 214 (458)
.+.+.|.+.. +..++..+.
T Consensus 100 ~~~~vA~~~P----dv~fv~id~ 118 (356)
T 3s99_A 100 PTVKVAKKFP----DVKFEHATG 118 (356)
T ss_dssp HHHHHHTTCT----TSEEEEESC
T ss_pred HHHHHHHHCC----CCEEEEEec
Confidence 4555554432 235555554
No 305
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=24.30 E-value=1.5e+02 Score=22.85 Aligned_cols=67 Identities=7% Similarity=0.012 Sum_probs=41.1
Q ss_pred EEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeC--hhhHHHHHHHHH
Q psy17441 121 FIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYAS--KQDAEIIFKDAQ 198 (458)
Q Consensus 121 ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~--~~~~~~il~~a~ 198 (458)
+|.+|+..- ...+.+.+++.|..| . ....+-.+.++.+++..+|+|+++.. ..+...++++.+
T Consensus 12 LiVdD~~~~---~~~l~~~L~~~G~~v---------~---~~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr 76 (123)
T 2lpm_A 12 LVVEDESMI---AMLIEDTLCELGHEV---------A---ATASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILA 76 (123)
T ss_dssp EEESSSTTT---SHHHHHHHHHHCCCC---------C---BCSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHH
T ss_pred EEEeCCHHH---HHHHHHHHHHCCCEE---------E---EEECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 344454433 455666677766221 0 01235567778888889999999743 445677777777
Q ss_pred hcCC
Q psy17441 199 YLNM 202 (458)
Q Consensus 199 ~~g~ 202 (458)
+.++
T Consensus 77 ~~~i 80 (123)
T 2lpm_A 77 ERNV 80 (123)
T ss_dssp HTCC
T ss_pred cCCC
Confidence 7653
No 306
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=23.81 E-value=4.5e+02 Score=24.58 Aligned_cols=88 Identities=6% Similarity=-0.058 Sum_probs=49.3
Q ss_pred CeEEEEEEecC-cchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh------h
Q psy17441 116 YMKVIFIHSSD-TDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK------Q 188 (458)
Q Consensus 116 w~~v~ii~~~d-~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~------~ 188 (458)
++++.++|... ......++.+.+.+.+.|. .+.. ++....+......++.+ +|.|++.++. .
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~------~v~~---~~l~~~~~~~~~~~l~~--~D~iiigsP~y~~~~~~ 324 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGC------ETVL---LEMTSSDITKVALHTYD--SGAVAFASPTLNNTMMP 324 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTC------EEEE---EEGGGCCHHHHHHHHHT--CSEEEEECCCBTTBCCH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCC------eEEE---EEcCcCCHHHHHHHHHh--CCEEEEEcCccCcCchH
Confidence 57888888543 2334567888888877662 2211 22223344455555554 6788877554 3
Q ss_pred hHHHHHHHHHhcCC-cccceEEEeecc
Q psy17441 189 DAEIIFKDAQYLNM-TETGYVWIVTEQ 214 (458)
Q Consensus 189 ~~~~il~~a~~~g~-~~~~~~wi~t~~ 214 (458)
....++.......+ .++....+.+.+
T Consensus 325 ~~k~fld~l~~~~~~~~K~~~~~~t~g 351 (414)
T 2q9u_A 325 SVAAALNYVRGLTLIKGKPAFAFGAFG 351 (414)
T ss_dssp HHHHHHHHHHHHTTTTTSBEEEEEEES
T ss_pred HHHHHHHHHHhhcccCCCEEEEEEecC
Confidence 46667776655444 443344444443
No 307
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=23.77 E-value=3.7e+02 Score=25.12 Aligned_cols=90 Identities=11% Similarity=0.058 Sum_probs=63.1
Q ss_pred ecCCCchhHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHH
Q psy17441 95 RTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMK 174 (458)
Q Consensus 95 r~~p~~~~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik 174 (458)
+..|+.....+.+.++++..+-++|-|.++.+.+ .+.|++.+.+.++ .+ +.++++ ...+....
T Consensus 259 mClPSle~I~rqIk~~vk~~~lksVFIATDa~~~----~~ELk~~L~~~~v------~v---v~~~pe----~a~ID~~I 321 (362)
T 3zy2_A 259 ICSPSKQQILEQIVEKVGSIGAKSVFVASDKDHM----IDEINEALKPYEI------EA---HRQEPD----DMYTSLAI 321 (362)
T ss_dssp HHSCCHHHHHHHHHHHHHHHTCSEEEEEESSCCC----HHHHHHHHGGGTC------CE---ECCSSC----CHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhcCCcEEEEecCCHHH----HHHHHHHhhccCc------eE---EEeCCc----hhHHHHHH
Confidence 3468999999999999999999999888876653 5788888876552 21 223332 35556666
Q ss_pred hccCeEEEEEeChhhHHHHHHHHHhcC
Q psy17441 175 NAQARVYLMYASKQDAEIIFKDAQYLN 201 (458)
Q Consensus 175 ~~~~~viil~~~~~~~~~il~~a~~~g 201 (458)
-+.++.+|-.|...-...+.++=.-+|
T Consensus 322 ~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 322 MGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp HHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred HHhCCEeecCccccccHHHHHHHHhcC
Confidence 678899998877776666655544555
No 308
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=23.64 E-value=2.3e+02 Score=21.05 Aligned_cols=68 Identities=4% Similarity=0.129 Sum_probs=39.5
Q ss_pred HHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh--hhHHHHHHHHHhcCCcccceEEE
Q psy17441 133 LGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK--QDAEIIFKDAQYLNMTETGYVWI 210 (458)
Q Consensus 133 ~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~--~~~~~il~~a~~~g~~~~~~~wi 210 (458)
.+.+.+.+++.| ..+. .... + ..+.+..+++..+++|++.... .+...++++.++..... .+.+
T Consensus 14 ~~~l~~~L~~~g------~~v~--~~~~-~---~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~--~ii~ 79 (134)
T 3f6c_A 14 IAAIRNLLIKND------IEIL--AELT-E---GGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSG--IIII 79 (134)
T ss_dssp HHHHHHHHHHTT------EEEE--EEES-S---STTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCS--EEEE
T ss_pred HHHHHHHHhhCC------cEEE--EEcC-C---HHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCC--eEEE
Confidence 566677777665 2221 1222 2 2234455666789999998543 45778888888765433 3444
Q ss_pred eecc
Q psy17441 211 VTEQ 214 (458)
Q Consensus 211 ~t~~ 214 (458)
.++.
T Consensus 80 ~s~~ 83 (134)
T 3f6c_A 80 VSAK 83 (134)
T ss_dssp EECC
T ss_pred EeCC
Confidence 4443
No 309
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=23.56 E-value=1e+02 Score=27.03 Aligned_cols=64 Identities=6% Similarity=-0.034 Sum_probs=42.9
Q ss_pred eEEEEEEec--CcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeChhh
Q psy17441 117 MKVIFIHSS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQD 189 (458)
Q Consensus 117 ~~v~ii~~~--d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~~~ 189 (458)
+.|+++..+ +.|.......+++.+++.|. .+.. .... +.......++.+.+.+.+.|| ......
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~------~~~~-~~~~-~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 6 QLIAVLIDDYSNPWFIDLIQSLSDVLTPKGY------RLSV-IDSL-TSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp CEEEEEESCTTSGGGHHHHHHHHHHHGGGTC------EEEE-ECSS-SSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHCCC------EEEE-EeCC-CchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 578888754 56888999999999999883 2221 1112 334455677788888999999 544433
No 310
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=23.54 E-value=2.6e+02 Score=21.64 Aligned_cols=68 Identities=7% Similarity=-0.053 Sum_probs=40.9
Q ss_pred HHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeC--hhhHHHHHHHHHhcCCcccceEEE
Q psy17441 133 LGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYAS--KQDAEIIFKDAQYLNMTETGYVWI 210 (458)
Q Consensus 133 ~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~--~~~~~~il~~a~~~g~~~~~~~wi 210 (458)
...+.+.+++.| ..+ ... .+..+.++.+++..+++|++... ..+...+++..++......-.+.+
T Consensus 20 ~~~l~~~L~~~g------~~v---~~~----~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~ 86 (154)
T 3gt7_A 20 AEHLKHILEETG------YQT---EHV----RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVIL 86 (154)
T ss_dssp HHHHHHHHHTTT------CEE---EEE----SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred HHHHHHHHHHCC------CEE---EEe----CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEE
Confidence 566677777766 221 112 24566777777888999998854 345777888887764222223444
Q ss_pred eec
Q psy17441 211 VTE 213 (458)
Q Consensus 211 ~t~ 213 (458)
.+.
T Consensus 87 ~s~ 89 (154)
T 3gt7_A 87 LTI 89 (154)
T ss_dssp EEC
T ss_pred EEC
Confidence 443
No 311
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=23.52 E-value=2.5e+02 Score=21.58 Aligned_cols=72 Identities=6% Similarity=-0.051 Sum_probs=49.9
Q ss_pred hhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHH--HhccCeEEEEEeChhhHHHHHHHHHhcCCcccc
Q psy17441 129 GRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEM--KNAQARVYLMYASKQDAEIIFKDAQYLNMTETG 206 (458)
Q Consensus 129 g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~i--k~~~~~viil~~~~~~~~~il~~a~~~g~~~~~ 206 (458)
-.+..+.++++++++| ..+... + |....+.+- ....+-.|+.+|++..+..+++...+.|+.-+.
T Consensus 12 ~~e~~~~l~~al~~~G------f~v~~~--i-----d~~~~l~~k~g~~~~~~~il~~cnP~~a~~~l~~~p~~g~~lPc 78 (129)
T 1j3m_A 12 LAEARAQVEAALKEEG------FGILTE--I-----DVAATLKAKLGLEKPPYLILGACNPNLAARALEALPEIGLLLPC 78 (129)
T ss_dssp HHHHHHHHHHHHHHTT------CEEEEE--E-----EHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHCGGGGGGCSE
T ss_pred HHHHHHHHHHHHHHCC------CEEEEE--e-----CHHHHHHHhcCCCCCCeEEEEECCHHHHHHHHHhCHHHHhhcCc
Confidence 4577899999999998 332222 2 344443322 123455778899999999999999999998877
Q ss_pred eEEEeec
Q psy17441 207 YVWIVTE 213 (458)
Q Consensus 207 ~~wi~t~ 213 (458)
.+.+--+
T Consensus 79 rv~V~e~ 85 (129)
T 1j3m_A 79 NVVLREA 85 (129)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 7766544
No 312
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=23.52 E-value=1.1e+02 Score=25.00 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=23.0
Q ss_pred EEEEEEEEeCCCcccHHHHHHHHHh-ccCeEEEEEeC
Q psy17441 151 VQVEAVIEFEPGLTTFKDQLYEMKN-AQARVYLMYAS 186 (458)
Q Consensus 151 ~~v~~~~~~~~~~~d~~~~l~~ik~-~~~~viil~~~ 186 (458)
..+......+.+.+.+.+.+++..+ .++|+||..+-
T Consensus 44 ~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG 80 (167)
T 1uuy_A 44 AKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGG 80 (167)
T ss_dssp EEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred cEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4444444456566667777777654 47899988743
No 313
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=23.51 E-value=3.8e+02 Score=25.99 Aligned_cols=147 Identities=10% Similarity=0.055 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHhhcCCeEEEEE-e-CCCCCCC----chHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCch
Q psy17441 28 NPILTALSVCKFLISERVYAVIV-S-HPLTGDL----SPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYS 101 (458)
Q Consensus 28 ~~~~~~~~~~~~l~~~~V~aiIG-~-~~~~s~~----~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~ 101 (458)
.+...+..++++..+.++-+++- + |-.-... ....+...+..+++.+|.|+|.- ..+.....+ .-..|..
T Consensus 72 vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~G-v~~~~~~~~--~~~~~~~- 147 (457)
T 2csu_A 72 VPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCVG-IMNTHVDLN--ATFITVA- 147 (457)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCCE-EEEGGGTEE--EESSCCC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcce-EEccCCCce--eeecCCC-
Confidence 34556666677776767765442 1 1111110 14667788899999999988842 122111111 1112321
Q ss_pred hHHHHHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeC-CCcccHHHHHHHHHh-ccCe
Q psy17441 102 HQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFE-PGLTTFKDQLYEMKN-AQAR 179 (458)
Q Consensus 102 ~~~~ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~-~~~~d~~~~l~~ik~-~~~~ 179 (458)
.. .+|++|......+ ..+...+.+.|+. +...+..- ..+.++.+.|+-+.+ ..++
T Consensus 148 -----------~~--G~v~~vsqSG~~~----~~~~~~~~~~g~G------~s~~vs~G~~~~~~~~d~l~~~~~D~~t~ 204 (457)
T 2csu_A 148 -----------KK--GNVAFISQSGALG----AGIVYKTIKEDIG------FSKFISVGNMADVDFAELMEYLADTEEDK 204 (457)
T ss_dssp -----------EE--CSEEEEESCHHHH----HHHHHHHHHTTCE------ESEEEECTTCCSSCHHHHHHHHTTCSSCC
T ss_pred -----------CC--CCEEEEeCCHHHH----HHHHHHHHhcCCC------eeEEEECCCcCCCCHHHHHHHHhcCCCCC
Confidence 12 6799998765544 3344555566632 22223332 135578888888755 6789
Q ss_pred EEEEEeCh-hhHHHHHHHHHhcC
Q psy17441 180 VYLMYASK-QDAEIIFKDAQYLN 201 (458)
Q Consensus 180 viil~~~~-~~~~~il~~a~~~g 201 (458)
+|+++... .+.+.+++.|++..
T Consensus 205 ~I~l~~E~i~~~~~f~~~a~~~~ 227 (457)
T 2csu_A 205 AIALYIEGVRNGKKFMEVAKRVT 227 (457)
T ss_dssp EEEEEESCCSCHHHHHHHHHHHH
T ss_pred EEEEEEecCCCHHHHHHHHHHhc
Confidence 99999987 77899999988874
No 314
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=23.40 E-value=2.2e+02 Score=20.89 Aligned_cols=49 Identities=12% Similarity=0.014 Sum_probs=28.4
Q ss_pred cHHHHHHHHHhccCeEEEEEeC--hhhHHHHHHHHHhcCCcccceEEEeec
Q psy17441 165 TFKDQLYEMKNAQARVYLMYAS--KQDAEIIFKDAQYLNMTETGYVWIVTE 213 (458)
Q Consensus 165 d~~~~l~~ik~~~~~viil~~~--~~~~~~il~~a~~~g~~~~~~~wi~t~ 213 (458)
+..+.++.+++..+++|+++.. ..+...++++.++......-.+.+.+.
T Consensus 34 ~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 34 NGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp SHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEES
T ss_pred CHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEec
Confidence 4455666677777888887643 345667777776553222223444444
No 315
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=23.26 E-value=53 Score=28.08 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=30.6
Q ss_pred hhhhhhcCCCCceEEEEeCCChHHHHHhhchhhHHHHHHHHHcCCCCHHHHHHHhh
Q psy17441 402 INDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457 (458)
Q Consensus 402 ~~dL~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~v~ 457 (458)
++||. + ++|+..|+....+++.. ..+...+++.++++++|.
T Consensus 102 ~~dL~------g-~igv~~g~~~~~~l~~~--------~~~~~~~~~~~~~~~~L~ 142 (232)
T 3i6v_A 102 GADLS------G-IVAAQTATIQAGYIAES--------GATLVEFATPEETIAAVR 142 (232)
T ss_dssp TCCTT------S-EEEEETTSHHHHHHHHS--------SSEEEEESSHHHHHHHHH
T ss_pred hHHhC------C-CEEEecCchHHHHHHhc--------CCeEEEeCCHHHHHHHHH
Confidence 78886 6 99999999999998874 222334677777777765
No 316
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=23.20 E-value=1.5e+02 Score=26.33 Aligned_cols=84 Identities=11% Similarity=0.081 Sum_probs=46.1
Q ss_pred HHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCch--hHHH---HHHHHHHhc-----CCeE------EEEEEec
Q psy17441 62 AVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYS--HQAD---VWVELLKHF-----NYMK------VIFIHSS 125 (458)
Q Consensus 62 ~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~--~~~~---ai~~ll~~~-----~w~~------v~ii~~~ 125 (458)
.....+...++|.+.-.-.+....+.. ...-|..|..- +... -+.++++.- .-++ -.+++.|
T Consensus 143 ~~~~~A~~~Gl~~~~E~FADR~Y~~dG--~LvpR~~~gAvi~d~~~~~~rv~~m~~~g~V~t~~G~~i~i~adTiCvHGD 220 (252)
T 1xw8_A 143 ELIRAGKQYGLTTREEVFADRGYQADG--SLVPRSQSGALIENEEQALAQTLEMVQHGRVKSITGEWATVAAQTVCLHGD 220 (252)
T ss_dssp HHHHHHHHTTCCEEEEECTTSCBCTTS--SBCCTTTCC-----CTTHHHHHHHHHHHSEEECTTSCEEECCCCEEECCCC
T ss_pred HHHHHHHHcCCcEEEEEeeccccCCCC--CEeccCCCCCccCCHHHHHHHHHHHHHCCCEEecCCCEeeccCCEEEECCC
Confidence 467788899999998666555443332 34445445432 1222 333344331 1122 3456778
Q ss_pred CcchhHHHHHHHHhhhccCCcc
Q psy17441 126 DTDGRALLGRFQTTSQNQEDDV 147 (458)
Q Consensus 126 d~~g~~~~~~l~~~l~~~gi~v 147 (458)
++-...++..+++.+++.||.|
T Consensus 221 ~p~Av~~a~~iR~~L~~~gi~i 242 (252)
T 1xw8_A 221 GEHALAFARRLRSAFAEKGIVV 242 (252)
T ss_dssp C-CCHHHHHHHHHHC----CCB
T ss_pred ChHHHHHHHHHHHHHHHCCCEE
Confidence 8888899999999999988654
No 317
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=22.71 E-value=2.5e+02 Score=21.21 Aligned_cols=71 Identities=8% Similarity=0.114 Sum_probs=41.1
Q ss_pred HHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh--hhHHHHHHHHHhcCCcccceEEE
Q psy17441 133 LGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK--QDAEIIFKDAQYLNMTETGYVWI 210 (458)
Q Consensus 133 ~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~--~~~~~il~~a~~~g~~~~~~~wi 210 (458)
...+.+.+++.|.. .. .... .+..+.+..+++..+++|++.... .+...++++.++.+....-.+.+
T Consensus 18 ~~~l~~~L~~~~~~----~~---v~~~----~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~ 86 (144)
T 3kht_A 18 IALIRRVLDRKDIH----CQ---LEFV----DNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVI 86 (144)
T ss_dssp HHHHHHHHHHTTCC----EE---EEEE----SSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEE
T ss_pred HHHHHHHHHhcCCC----ee---EEEE----CCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEE
Confidence 46666777766621 11 1112 245666777777888999987543 45777888887743322224555
Q ss_pred eecc
Q psy17441 211 VTEQ 214 (458)
Q Consensus 211 ~t~~ 214 (458)
.++.
T Consensus 87 ~s~~ 90 (144)
T 3kht_A 87 LTDN 90 (144)
T ss_dssp EETT
T ss_pred EeCC
Confidence 5543
No 318
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=22.62 E-value=2.4e+02 Score=23.36 Aligned_cols=61 Identities=11% Similarity=0.040 Sum_probs=36.3
Q ss_pred EEEEEEecCcc--h---hHHHHHHHHhhh---ccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhc-cCeEEEEEe
Q psy17441 118 KVIFIHSSDTD--G---RALLGRFQTTSQ---NQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNA-QARVYLMYA 185 (458)
Q Consensus 118 ~v~ii~~~d~~--g---~~~~~~l~~~l~---~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~-~~~viil~~ 185 (458)
+++||...|+- | ......+.+.++ +.| ..+ ....++.+.+.+.+.+++..+. ++|+||..+
T Consensus 7 rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G------~~v-~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittG 76 (178)
T 2pbq_A 7 VIGVVTISDRASKGIYEDISGKAIIDYLKDVIITP------FEV-EYRVIPDERDLIEKTLIELADEKGCSLILTTG 76 (178)
T ss_dssp EEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSC------CEE-EEEEECSCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred EEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCC------CEE-EEEEcCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 67777765531 1 122455666555 777 333 2334555566777777776653 689998874
No 319
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=22.58 E-value=70 Score=26.24 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=10.6
Q ss_pred cccHHHHHHHHHhc-cCeEEEEE
Q psy17441 163 LTTFKDQLYEMKNA-QARVYLMY 184 (458)
Q Consensus 163 ~~d~~~~l~~ik~~-~~~viil~ 184 (458)
+.||.+.++++++. +.+|+++.
T Consensus 118 D~DF~plv~~lr~~~G~~V~v~g 140 (165)
T 2qip_A 118 DGDFSLLVERIQQRYNKKVTVYG 140 (165)
T ss_dssp CGGGHHHHHHHHHHHCCEEEEEE
T ss_pred ChhHHHHHHHHHHHcCcEEEEEe
Confidence 34555555555553 44444443
No 320
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=22.06 E-value=1.3e+02 Score=27.21 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=22.2
Q ss_pred CCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhh
Q psy17441 396 KTKLTGINDARLRNTMENLTCATVKGSAVDMYFRR 430 (458)
Q Consensus 396 ~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~ 430 (458)
..+|++++||+ +.++|+..++....++..
T Consensus 120 ~s~I~s~~DLk------Gk~i~v~~gs~~~~~~~~ 148 (324)
T 3ksx_A 120 KSALRTVADLK------GKRIAFQKGSSAHNLLLR 148 (324)
T ss_dssp TCSCCSGGGGT------TCEEEECTTSHHHHHHHH
T ss_pred CCCCCCHHHhC------CCEEEecCCChHHHHHHH
Confidence 45799999997 778898878776655443
No 321
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=21.81 E-value=2.6e+02 Score=21.03 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=30.1
Q ss_pred cHHHHHHHHHhccCeEEEEEeC--hhhHHHHHHHHHhcCCcccceEEEeec
Q psy17441 165 TFKDQLYEMKNAQARVYLMYAS--KQDAEIIFKDAQYLNMTETGYVWIVTE 213 (458)
Q Consensus 165 d~~~~l~~ik~~~~~viil~~~--~~~~~~il~~a~~~g~~~~~~~wi~t~ 213 (458)
+..+.++.+.+..+++|+++.. ..+...++++.++......-.+.+.+.
T Consensus 36 ~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~ 86 (136)
T 3t6k_A 36 SGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTA 86 (136)
T ss_dssp SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEEC
T ss_pred CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEec
Confidence 4456666777778899998754 345677777777654322223444444
No 322
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=21.72 E-value=90 Score=24.55 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHhcCCeEEEEEEecCcch----hHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCccc-HHHHHHHHHh
Q psy17441 101 SHQADVWVELLKHFNYMKVIFIHSSDTDG----RALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTT-FKDQLYEMKN 175 (458)
Q Consensus 101 ~~~~~ai~~ll~~~~w~~v~ii~~~d~~g----~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d-~~~~l~~ik~ 175 (458)
..|-..+-++.+..||.-+.+..+....| +.....+.+.+++..+.+ +-+.....+..+..+ ....+..+++
T Consensus 24 ~~Q~~~l~~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~l~~ll~~~~~g~~d~---lvv~~ldRl~R~~~~~~~~~~~~l~~ 100 (138)
T 3bvp_A 24 DEQIDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDIENKAFDT---VLVYKLDRLSRSVRDTLYLVKDVFTK 100 (138)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEETCCSSSSCCHHHHHHHHGGGGTSCSE---EEESSHHHHCSCHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHhCCCCE---EEEEeCCcccccHHHHHHHHHHHHHH
Confidence 45666777777778888666554432222 344555555555432111 111111122223333 3344445566
Q ss_pred ccCeEEEE
Q psy17441 176 AQARVYLM 183 (458)
Q Consensus 176 ~~~~viil 183 (458)
.+.+++.+
T Consensus 101 ~gv~l~~~ 108 (138)
T 3bvp_A 101 NKIDFISL 108 (138)
T ss_dssp GTCEEEET
T ss_pred CCCEEEEe
Confidence 66666654
No 323
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=21.53 E-value=2.3e+02 Score=21.23 Aligned_cols=66 Identities=6% Similarity=0.020 Sum_probs=37.2
Q ss_pred HHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeCh----hhHHHHHHHHHhcCCcccceE
Q psy17441 133 LGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASK----QDAEIIFKDAQYLNMTETGYV 208 (458)
Q Consensus 133 ~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~~----~~~~~il~~a~~~g~~~~~~~ 208 (458)
...+++.+++.| ..+. .. .+..+.+..+++..+++|++.... .+...++++.++.+... .+
T Consensus 19 ~~~l~~~L~~~g------~~v~---~~----~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~--~i 83 (136)
T 3kto_A 19 RAALSKLLSPLD------VTIQ---CF----ASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHL--PT 83 (136)
T ss_dssp HHHHHHHHTTSS------SEEE---EE----SSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCC--CE
T ss_pred HHHHHHHHHHCC------cEEE---Ee----CCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCC--CE
Confidence 466667777665 2211 12 134455555666678888887543 34667777777765322 34
Q ss_pred EEeec
Q psy17441 209 WIVTE 213 (458)
Q Consensus 209 wi~t~ 213 (458)
.+.++
T Consensus 84 i~~s~ 88 (136)
T 3kto_A 84 IVMAS 88 (136)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 44444
No 324
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=21.46 E-value=1.1e+02 Score=30.00 Aligned_cols=95 Identities=8% Similarity=0.080 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCC--CcccHHHHHHHHHhccCeEEEE
Q psy17441 106 VWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEP--GLTTFKDQLYEMKNAQARVYLM 183 (458)
Q Consensus 106 ai~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~--~~~d~~~~l~~ik~~~~~viil 183 (458)
.+.++++.+|-+++.||++..... ...+.+.+.+++.|+. +.. ..++. ..+++.+..+.+++ ++|.||-
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~------~~~-~~~~ge~~~~~v~~~~~~~~~-~~D~IIA 151 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMT------VTK-LVFGGEASLVELDKLRKQCPD-DTQVIIG 151 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCE------EEE-EEECSCCCHHHHHHHHTTSCT-TCCEEEE
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCe------EEE-EeeCCCCCHHHHHHHHHHHhh-CCCEEEE
Confidence 456677778866999998765433 4678888889887732 221 12222 22345555555566 8899997
Q ss_pred EeCh--hhHHHHHHHHHhcCCcccceEEEeecc
Q psy17441 184 YASK--QDAEIIFKDAQYLNMTETGYVWIVTEQ 214 (458)
Q Consensus 184 ~~~~--~~~~~il~~a~~~g~~~~~~~wi~t~~ 214 (458)
.+-+ -|+..++.. ..++. ++-|-|..
T Consensus 152 vGGGSviD~AK~iA~--~~giP---~I~IPTTA 179 (450)
T 1ta9_A 152 VGGGKTMDSAKYIAH--SMNLP---SIICPTTA 179 (450)
T ss_dssp EESHHHHHHHHHHHH--HTTCC---EEEEESSC
T ss_pred eCCcHHHHHHHHHHH--hcCCC---EEEEeCCC
Confidence 7654 345554442 22332 55565553
No 325
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=21.42 E-value=2.6e+02 Score=20.96 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=31.2
Q ss_pred cHHHHHHHHHh-ccCeEEEEEeC---hhhHHHHHHHHHhcCCcccceEEEeecc
Q psy17441 165 TFKDQLYEMKN-AQARVYLMYAS---KQDAEIIFKDAQYLNMTETGYVWIVTEQ 214 (458)
Q Consensus 165 d~~~~l~~ik~-~~~~viil~~~---~~~~~~il~~a~~~g~~~~~~~wi~t~~ 214 (458)
+..+.++.+++ ..+++|+++.. ..+...++++.++......-.+.+.++.
T Consensus 37 ~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 90 (140)
T 3lua_A 37 NLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKS 90 (140)
T ss_dssp SHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESC
T ss_pred CHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCC
Confidence 45566677777 78999998755 4467778888877322222245555543
No 326
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=21.38 E-value=3.2e+02 Score=21.96 Aligned_cols=37 Identities=5% Similarity=-0.043 Sum_probs=22.0
Q ss_pred cHHHHHHHHHhccCeEEEEEe--ChhhHHHHHHHHHhcC
Q psy17441 165 TFKDQLYEMKNAQARVYLMYA--SKQDAEIIFKDAQYLN 201 (458)
Q Consensus 165 d~~~~l~~ik~~~~~viil~~--~~~~~~~il~~a~~~g 201 (458)
+....+..+++..+++|+++. +..+...++++.++..
T Consensus 39 ~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~ 77 (184)
T 3rqi_A 39 NKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQ 77 (184)
T ss_dssp SHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHC
T ss_pred CHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcC
Confidence 344556666666777777753 3334566666666544
No 327
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=20.79 E-value=2.8e+02 Score=20.96 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=38.7
Q ss_pred HHHHHHhhhccCCcceeeEEEEEEEEeCC--C-cccHHHHHHHHHhccCeEEEEEeChhhHHHHHHHHH---hcCCcccc
Q psy17441 133 LGRFQTTSQNQEDDVEIKVQVEAVIEFEP--G-LTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQ---YLNMTETG 206 (458)
Q Consensus 133 ~~~l~~~l~~~gi~v~~~~~v~~~~~~~~--~-~~d~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~---~~g~~~~~ 206 (458)
++.++++|.+.|+. +.++..+.-+-. + .+.|+.....+....-..+.+.+..+.+..++.... +.|-.+++
T Consensus 13 l~~vk~AL~~~G~~---g~Tv~~v~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~v~~vv~~I~~~~~tg~~GdG 89 (112)
T 3mhy_A 13 LDEVREALTSLGIQ---GLTVSEVKGFGRQKGQTEIYRGAEYSVSFLPKVKVEVAVSDDQYEQVVEAIQKAANTGRIGDG 89 (112)
T ss_dssp HHHHHHHHHHHTCC---CEEEEEEEEECTTTTCC---------CCCEEEEEEEEEECTTTHHHHHHHHHHHHCCSSTTCC
T ss_pred HHHHHHHHHHCCCC---eEEEEEEEeEccccCCcceeccceeeecccceEEEEEEEchHHHHHHHHHHHHHhcCCCCCCe
Confidence 57888888888843 466654444422 1 122332222222221223445566666555555544 44556678
Q ss_pred eEEEeec
Q psy17441 207 YVWIVTE 213 (458)
Q Consensus 207 ~~wi~t~ 213 (458)
++|+..=
T Consensus 90 kIfV~~v 96 (112)
T 3mhy_A 90 KIFVLDI 96 (112)
T ss_dssp EEEEEEC
T ss_pred EEEEEEh
Confidence 8888754
No 328
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=20.71 E-value=2.9e+02 Score=21.19 Aligned_cols=66 Identities=11% Similarity=0.049 Sum_probs=38.2
Q ss_pred HHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeC--hhhHHHHHHHHHhcCCcccceEEE
Q psy17441 133 LGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYAS--KQDAEIIFKDAQYLNMTETGYVWI 210 (458)
Q Consensus 133 ~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~--~~~~~~il~~a~~~g~~~~~~~wi 210 (458)
...+.+.+++.| ..+. .. .+..+.+..+++..+++|+++.. ..+...++++.++..... .+.+
T Consensus 27 ~~~l~~~L~~~g------~~v~---~~----~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~--~ii~ 91 (153)
T 3hv2_A 27 LQRLQQLLSPLP------YTLH---FA----RDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPST--TRIL 91 (153)
T ss_dssp HHHHHHHHTTSS------CEEE---EE----SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTS--EEEE
T ss_pred HHHHHHHhcccC------cEEE---EE----CCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCC--eEEE
Confidence 566677777665 2111 12 24556666677778888888754 345677777777654322 3444
Q ss_pred eec
Q psy17441 211 VTE 213 (458)
Q Consensus 211 ~t~ 213 (458)
+++
T Consensus 92 ~s~ 94 (153)
T 3hv2_A 92 LTG 94 (153)
T ss_dssp ECC
T ss_pred EEC
Confidence 444
No 329
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=20.53 E-value=2e+02 Score=26.28 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=22.2
Q ss_pred CCCCCChhhhhhcCCCCceEEEEeCCChHHHHHhh
Q psy17441 396 KTKLTGINDARLRNTMENLTCATVKGSAVDMYFRR 430 (458)
Q Consensus 396 ~~~i~~~~dL~~~~~~~~~~~g~~~~s~~~~~~~~ 430 (458)
.++|++++||+ +.++|+..+|....++..
T Consensus 108 ~s~i~s~~DLk------Gk~I~v~~gs~~~~~~~~ 136 (348)
T 3uif_A 108 NSTAKSIKDLK------GKKIALHRGRPWELAFSN 136 (348)
T ss_dssp TCCCCSGGGGT------TSEEEECTTSTHHHHHHH
T ss_pred CCCCCCHHHcC------CCEEEecCCChHHHHHHH
Confidence 45799999997 678898888877655443
No 330
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=20.37 E-value=6.1e+02 Score=24.79 Aligned_cols=142 Identities=8% Similarity=-0.045 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEeCCCCCCCchHHHHHhhcccCCcEEeeecCCCCCCCCccccceeecCCCchhHHHHHH
Q psy17441 29 PILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWV 108 (458)
Q Consensus 29 ~~~~~~~~~~~l~~~~V~aiIG~~~~~s~~~~~~~~~i~~~~~iP~Is~~a~~~~ls~~~~~p~~~r~~p~~~~~~~ai~ 108 (458)
+...+..+.++..+.|+-+||=+... +......+..++..+++.+|.|++ ..... ...+..| ..
T Consensus 45 Pa~~v~~~v~e~~~~Gv~~viis~Gf-~~~~~~~l~~~A~~~g~rliGPNc--G~~~~-~~~~~~f----~~-------- 108 (480)
T 3dmy_A 45 AGEYAAELANQALDRNLNVMMFSDNV-TLEDEIQLKTRAREKGLLVMGPDC--GTSMI-AGTPLAF----AN-------- 108 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCCCC-CHHHHHHHHHHHHHTTCCEECSSC--CEEEE-TTEEEES----CC--------
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCC-CHHHHHHHHHHHHHcCCEEEecCc--ccccc-CCccccc----cC--------
Confidence 34555555666667777755531011 111234567788999999999998 32221 1111111 11
Q ss_pred HHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCC-------CcccHHHHHHHHHh-ccCeE
Q psy17441 109 ELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEP-------GLTTFKDQLYEMKN-AQARV 180 (458)
Q Consensus 109 ~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~-------~~~d~~~~l~~ik~-~~~~v 180 (458)
.+.-.+|++|......+ ..+...+.+.|+.+ ...+..-. .+.++.+.|+-+.+ ..+++
T Consensus 109 ----~~~~G~vaivSqSGal~----~~i~~~~~~~g~G~------S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~ 174 (480)
T 3dmy_A 109 ----VMPEGNIGVIGASGTGI----QELCSQIALAGEGI------THAIGLGGRDLSREVGGISALTALEMLSADEKSEV 174 (480)
T ss_dssp ----CCCEEEEEEEESCSHHH----HHHHHHHHHTTCCE------EEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCE
T ss_pred ----CCCCCCEEEEeccHHHH----HHHHHHHHHcCCCc------eEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCE
Confidence 02346899998876555 33445555666332 22233311 23357788888765 67899
Q ss_pred EEEEeCh---hhHHHHHHHHHhc
Q psy17441 181 YLMYASK---QDAEIIFKDAQYL 200 (458)
Q Consensus 181 iil~~~~---~~~~~il~~a~~~ 200 (458)
|+++... ..++.|++++++.
T Consensus 175 I~ly~E~~~e~~~~~f~~~ar~~ 197 (480)
T 3dmy_A 175 LAFVSKPPAEAVRLKIVNAMKAT 197 (480)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEEecCCcHHHHHHHHHHHhC
Confidence 9998743 3347889888754
No 331
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=20.29 E-value=1.6e+02 Score=26.30 Aligned_cols=85 Identities=8% Similarity=0.033 Sum_probs=52.7
Q ss_pred HHHHHHhcCCeEEEEEEecCcchhHHHHHHHHhhhccCCcceeeEEEEEEEEeCCCcccHHHHHHHHHhccCeEEEEEeC
Q psy17441 107 WVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYAS 186 (458)
Q Consensus 107 i~~ll~~~~w~~v~ii~~~d~~g~~~~~~l~~~l~~~gi~v~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~viil~~~ 186 (458)
+++..+ -|-.-++++++.+ |..+..+.++..-+...+ .+-....+ -|- -++.+.+..++|.|++.+.
T Consensus 69 iA~~~~-~GA~aiSVLTd~~-~F~Gs~~~L~~vr~~v~l------PvLrKDFi----id~-yQI~eAr~~GADaILLI~a 135 (258)
T 4a29_A 69 YAKFME-RYAVGLSITTEEK-YFNGSYETLRKIASSVSI------PILMSDFI----VKE-SQIDDAYNLGADTVLLIVK 135 (258)
T ss_dssp HHHHHT-TTCSEEEEECCST-TTCCCHHHHHHHHTTCSS------CEEEESCC----CSH-HHHHHHHHHTCSEEEEEGG
T ss_pred HHHHHh-CCCeEEEEeCCCC-CCCCCHHHHHHHHHhcCC------CEeecccc----ccH-HHHHHHHHcCCCeeehHHh
Confidence 445444 3667888888766 544556666665444332 22111111 111 3456678889999998755
Q ss_pred h---hhHHHHHHHHHhcCCcc
Q psy17441 187 K---QDAEIIFKDAQYLNMTE 204 (458)
Q Consensus 187 ~---~~~~~il~~a~~~g~~~ 204 (458)
. .+...+...|+++||..
T Consensus 136 ~L~~~~l~~l~~~A~~lGl~~ 156 (258)
T 4a29_A 136 ILTERELESLLEYARSYGMEP 156 (258)
T ss_dssp GSCHHHHHHHHHHHHHTTCCC
T ss_pred hcCHHHHHHHHHHHHHHhHHH
Confidence 3 56889999999999973
No 332
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=20.22 E-value=2.7e+02 Score=20.54 Aligned_cols=37 Identities=5% Similarity=-0.032 Sum_probs=21.0
Q ss_pred cHHHHHHHHHhccCeEEEEEeCh--hhHHHHHHHHHhcC
Q psy17441 165 TFKDQLYEMKNAQARVYLMYASK--QDAEIIFKDAQYLN 201 (458)
Q Consensus 165 d~~~~l~~ik~~~~~viil~~~~--~~~~~il~~a~~~g 201 (458)
+..+.++.+++..+++|++.... .+...++++.++.+
T Consensus 39 ~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (130)
T 3eod_A 39 DGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRG 77 (130)
T ss_dssp CHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTT
T ss_pred CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 44556666666677777776432 34456666666554
Done!