RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17441
(458 letters)
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION
channel, NMDA receptor, allosteri modulation,
phenylethanolamine, polyamine; HET: NAG BMA; 2.00A
{Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Length = 384
Score = 210 bits (536), Expect = 6e-64
Identities = 122/295 (41%), Positives = 176/295 (59%), Gaps = 22/295 (7%)
Query: 4 HINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPL--TGDLSPA 61
N + + + AT + PN I ALSVC+ LIS +VYA++VSHP T L+P
Sbjct: 27 QANKR--HFTRKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPPAPTDHLTPT 84
Query: 62 AVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIF 121
+SYT+GFY IPVIG+++R S +SDK+IH+SFLRTVPPYSHQA VW E+++ FN+ VI
Sbjct: 85 PISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVIL 144
Query: 122 IHSSDTDGRALLGRFQTTSQNQED---------------DVEIKVQVEAVIEFEPGLTTF 166
I S D +GRA + +T + +E D + + + V++FEPG
Sbjct: 145 IVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNL 204
Query: 167 KDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQ---ALTAKNVPV 223
L E K +ARV ++ AS+ DA ++K A L+MT GYVW+V E+ + P
Sbjct: 205 TALLLEAKELEARVIILSASEDDATAVYKSAAMLDMTGAGYVWLVGEREISGSALRYAPD 264
Query: 224 GIIGLKLVNATNEDAHIRDSIYVLTSALKEMNQSAVITEAPQDCDNSGSIWETGK 278
GIIGL+L+N NE AHI D++ V+ A+ E+ + IT+ P+ C + +IW+TG
Sbjct: 265 GIIGLQLINGKNESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGP 319
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel,
allosteric modulation, phenylethanolamine,
N-glycosylation, extracellular; HET: NAG BMA MAN FUC
QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A*
3jpy_A*
Length = 364
Score = 174 bits (441), Expect = 2e-50
Identities = 52/291 (17%), Positives = 117/291 (40%), Gaps = 14/291 (4%)
Query: 8 DIQYVNKGVTFSATGIQMDP-NPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYT 66
+ + V + M+ +P +C + ++ V+ + + + +
Sbjct: 26 KDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEAIAQILDFI 85
Query: 67 SGFYHIPVIGISSRDSA-FSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSS 125
S P++GI S +DK+ F + P QA V + +++ +++ + +
Sbjct: 86 SAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTY 145
Query: 126 DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQ-LYEMKNAQARVYLMY 184
+ + + ++T +N + ++E V+ + L + ++K Q+ + L+Y
Sbjct: 146 FPGYQDFVNKIRSTIEN----SFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLY 201
Query: 185 ASKQDAEIIFKDAQYLNMTETGYVWIVTEQAL-----TAKNVPVGIIGLKLVNA-TNEDA 238
+K++A IF+ A + +T GY WIV P G+I + A
Sbjct: 202 CTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPSEFPTGLISVSYDEWDYGLPA 261
Query: 239 HIRDSIYVLTSALKEM-NQSAVITEAPQDCDNSGSIWETGKPSRSSTLVSF 288
+RD I ++T+A +M ++ + I E C N+ + L++
Sbjct: 262 RVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINV 312
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane,
glycoprotein, transport, membrane, postsynaptic cell
membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus
norvegicus}
Length = 823
Score = 132 bits (333), Expect = 2e-33
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 23/218 (10%)
Query: 259 VITEAPQDCDNSGSIWETG-------KPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVL 311
+ + D S G + SFL P + +W+ ++ + V++VL
Sbjct: 472 ITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVL 531
Query: 312 YLLDRFSPFGRFRLSNSDNTE------EDALNLSSAIWFAWGVLLNSGIGEGTPRSFSAR 365
+L+ RFSP+ D E + + +++WF+ G + G + +PRS S R
Sbjct: 532 FLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQG-ADISPRSLSGR 590
Query: 366 VLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVD 425
++G VW F +II++SYTANLAAFL +ER + + D + + T+ +
Sbjct: 591 IVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAED---LSKQTEIAYGTLDSGSTK 647
Query: 426 MYFRRQV--ELSNMYRTMEANNYD----TAEDAIADVK 457
+FRR M+ M + T + +A V+
Sbjct: 648 EFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVR 685
Score = 113 bits (283), Expect = 6e-27
Identities = 39/312 (12%), Positives = 90/312 (28%), Gaps = 65/312 (20%)
Query: 5 INFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVS 64
+ I + N + C S VYA+ ++
Sbjct: 34 LTPHIDNLEVA------------NSFAVTNAFCS-QFSRGVYAIFG--FYDKKSV-NTIT 77
Query: 65 YTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHS 124
G H+ I S F H ++ P + L++++ + K +++
Sbjct: 78 SFCGTLHVSFITPS-----FPTDGTHPFVIQMRP---DLKGALLSLIEYYQWDKFAYLYD 129
Query: 125 SDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMY 184
SD L + ++ ++ I + T++ +++ + R ++
Sbjct: 130 SDRGLSTLQAVLDSAAEK---KWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILD 186
Query: 185 ASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKNV------PVGIIGLKLVNATN--- 235
+ I + GY +I+ T ++ + G ++V+ +
Sbjct: 187 CERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGAEVSGFQIVDYDDSLV 246
Query: 236 -------------------------EDAHIRDSIYVLTSALKEMNQSAV-ITEAPQDCD- 268
A D++ V+T A + + + + I+ D
Sbjct: 247 SKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDC 306
Query: 269 --NSGSIWETGK 278
N W G
Sbjct: 307 LANPAVPWGQGV 318
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION
channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus}
PDB: 3om1_A* 3qlu_A* 3qlv_A
Length = 393
Score = 120 bits (301), Expect = 3e-30
Identities = 50/310 (16%), Positives = 104/310 (33%), Gaps = 48/310 (15%)
Query: 3 QHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAA 62
+ IN I+ ++ + ++ + V +V+ P + S +
Sbjct: 30 EQINGIIEVPA-KARVEVDIFELQRDSQYETTDTMCQILPKGVVSVL--GPSSSPASAST 86
Query: 63 VSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFI 122
VS+ G IP I + ++ + + P + +LK FNY I
Sbjct: 87 VSHICGEKEIPHIKVGPEETPRLQYL-RFASVSLYPSNEDVSLAVSRILKSFNYPSASLI 145
Query: 123 HSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYL 182
+ L + I + +V + L E+++ + +
Sbjct: 146 CAKAECLLRL--------EELVRGFLISKETLSVRMLDDS-RDPTPLLKEIRDDKVSTII 196
Query: 183 MYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTA------KNVPVGIIGLKLVNATN- 235
+ A+ + ++ + A L MT Y +I+T I+G + N ++
Sbjct: 197 IDANASISHLVLRKASELGMTSAFYKYILTTMDFPILHLDGIVEDSSNILGFSMFNTSHP 256
Query: 236 ---------------------------EDAHIRDSIYVLTSALKEMNQSAVITEAPQDCD 268
A + D+++V+ SA++E+N+S I P C
Sbjct: 257 FYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQEIGVKPLACT 316
Query: 269 NSGSIWETGK 278
++ +IW G
Sbjct: 317 SA-NIWPHGT 325
>3o21_A Glutamate receptor 3; periplasmatic binding protein,
oligomerization, membrane, TR protein; HET: NAG; 2.20A
{Rattus norvegicus} PDB: 3p3w_A
Length = 389
Score = 98.0 bits (243), Expect = 2e-22
Identities = 44/314 (14%), Positives = 88/314 (28%), Gaps = 55/314 (17%)
Query: 3 QHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAA 62
Q N + K + +D + + + S VYA+
Sbjct: 28 QLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFG--FYDQMSMNTL 85
Query: 63 VSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFI 122
S+ H + S A I + + LL ++ + K +++
Sbjct: 86 TSFCGAL-HTSFVTPSFPTDADVQFVIQM--------RPALKGAILSLLSYYKWEKFVYL 136
Query: 123 HSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYL 182
+ ++ L + QN + ++ + + + F+ + EM Q + YL
Sbjct: 137 YDTERGFSVLQAIMEAAVQN---NWQVTARS---VGNIKDVQEFRRIIEEMDRRQEKRYL 190
Query: 183 MYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALT------AKNVPVGIIGLKLVNATNE 236
+ + I + L GY +++ T + I G ++VN N
Sbjct: 191 IDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILLERVMHGGANITGFQIVNNENP 250
Query: 237 D----------------------------AHIRDSIYVLTSALKEMNQSAVITEAPQDC- 267
A D+I V+ A + + + V
Sbjct: 251 MVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGSAG 310
Query: 268 ---DNSGSIWETGK 278
N W G
Sbjct: 311 DCLANPAVPWSQGI 324
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL
membrane, endoplasmic reticulum, glycoprotein, ION TRA
ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus}
PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Length = 376
Score = 96.8 bits (240), Expect = 4e-22
Identities = 39/289 (13%), Positives = 89/289 (30%), Gaps = 53/289 (18%)
Query: 28 NPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDK 87
N + C S VYA+ + S ++ G H+ I S F
Sbjct: 45 NSFAVTNAFCS-QFSRGVYAIFGFY---DKKSVNTITSFCGTLHVSFITPS-----FPTD 95
Query: 88 NIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDV 147
H ++ P + L++++ + K +++ SD L + ++
Sbjct: 96 GTHPFVIQMRPDLKG---ALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEK---KW 149
Query: 148 EIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGY 207
++ I + T++ +++ + R ++ + I + GY
Sbjct: 150 QVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGY 209
Query: 208 VWIVTEQALTAKNV------PVGIIGLKLVNATNED------------------------ 237
+I+ T ++ + G ++V+ +
Sbjct: 210 HYIIANLGFTDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATI 269
Query: 238 ----AHIRDSIYVLTSALKEMNQSAV-ITEAPQDCD---NSGSIWETGK 278
A D++ V+T A + + + + I+ D N W G
Sbjct: 270 KYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGV 318
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane,
transport protein; HET: NAG BMA MAN; 2.50A {Rattus
norvegicus}
Length = 384
Score = 96.4 bits (239), Expect = 5e-22
Identities = 39/314 (12%), Positives = 83/314 (26%), Gaps = 63/314 (20%)
Query: 3 QHINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAA 62
+ + + + + C S+ VYA+
Sbjct: 33 SQLTEPPKLLP-QIDIVNIS-----DSFEMTYRFCS-QFSKGVYAIFG--FYERRTVNML 83
Query: 63 VSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFI 122
S+ H+ I S + + + + + ++ H+ + ++I
Sbjct: 84 TSFCGAL-HVCFITPSFPVDTSNQFVLQL--------RPELQEALISIIDHYKWQTFVYI 134
Query: 123 HSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYL 182
+ +D L T ++ QV AV ++ +++ + R+ +
Sbjct: 135 YDADRGLSVLQRVLDTAAEK-------NWQVTAVNILTTTEEGYRMLFQDLEKKKERLVV 187
Query: 183 MYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTA------KNVPVGIIGLKLVNATN- 235
+ + I L GY +I+ K + G +LVN T+
Sbjct: 188 VDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDIDLNKFKESGANVTGFQLVNYTDT 247
Query: 236 ---------------------------EDAHIRDSIYVLTSALKEMNQ---SAVITEAPQ 265
A D + V+ A + + +
Sbjct: 248 IPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDISRRGNAG 307
Query: 266 DCD-NSGSIWETGK 278
DC N W G
Sbjct: 308 DCLANPAVPWGQGI 321
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap
module, G-protein coupled receptor, signaling; 2.38A
{Homo sapiens} PDB: 4f12_A*
Length = 433
Score = 96.1 bits (239), Expect = 9e-22
Identities = 28/174 (16%), Positives = 62/174 (35%), Gaps = 18/174 (10%)
Query: 42 SERVYAVIVSHPLTGDLSPA---AVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVP 98
V G + P+ ++ + +++ + ++ +DK + F RTVP
Sbjct: 83 GPNHLMVF------GGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVP 136
Query: 99 PYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIE 158
+ ++LLKH+ + +V + + + +I++
Sbjct: 137 SDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGE----DIEISDTESFS 192
Query: 159 FEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVT 212
+P + ++K R+ L + A +F A NM + Y WI+
Sbjct: 193 NDP-----CTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIP 241
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein
glycoprotein, cell junction, cell membrane,
glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus
norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Length = 395
Score = 93.6 bits (232), Expect = 4e-21
Identities = 52/316 (16%), Positives = 101/316 (31%), Gaps = 74/316 (23%)
Query: 4 HINFDIQYVNKGVTFSATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSP--- 60
+ +D Q +N +F A+ D +S V A+ G
Sbjct: 44 TLTYDTQKINLYDSFEASKKACD-------------QLSLGVAAIF------GPSHSSSA 84
Query: 61 AAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVI 120
AV +P I + +K+ ++ P +S + ++L++ F + V
Sbjct: 85 NAVQSICNALGVPHIQTRWKHQVSDNKDSF--YVSLYPDFSSLSRAILDLVQFFKWKTVT 142
Query: 121 FIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARV 180
++ G L ++ + + K L EMK +
Sbjct: 143 VVYDDS-TGLIRLQELIKAPSRYNLRLK-------IRQLPADTKDAKPLLKEMKRGKEFH 194
Query: 181 YLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKNVP------VGIIGLKLVNAT 234
+ S + A I K A + M Y +I T L A +V V + G +++N
Sbjct: 195 VIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTE 254
Query: 235 N--------------------------------EDAHIRDSIYVLTSALKEMNQSAVITE 262
N + A + D+++V++ A+++ Q +T
Sbjct: 255 NTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQ---MTV 311
Query: 263 APQDCDNSGSIWETGK 278
+ C+ W G
Sbjct: 312 SSLQCNRH-KPWRFGT 326
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein
fold, dimer, hormone/growth FACT receptor, lyase
complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP:
c.93.1.1 PDB: 1t34_A* 3a3k_A*
Length = 435
Score = 92.5 bits (229), Expect = 2e-20
Identities = 24/189 (12%), Positives = 52/189 (27%), Gaps = 10/189 (5%)
Query: 28 NPILTALSVCKFLISERVYAVIVSHPLTGDLSP---AAVSYTSGFYHIPVIGISSRDSAF 84
+ L+ + G A V + + +P++ +
Sbjct: 61 SDTAAPLAAVDLKWEHSPAVFL------GPGCVYSAAPVGRFTAHWRVPLLTAGAPALGI 114
Query: 85 SDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQE 144
K+ + RT P + D L + + + +D G F
Sbjct: 115 GVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCFFIVEGLYMR 174
Query: 145 DDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTE 204
+ + V E + L ++ + RV + +S + A +T
Sbjct: 175 VRERLNITVNHQEFVEGDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTG 233
Query: 205 TGYVWIVTE 213
YV+ +
Sbjct: 234 EDYVFFHLD 242
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 86.7 bits (214), Expect = 1e-18
Identities = 28/192 (14%), Positives = 65/192 (33%), Gaps = 14/192 (7%)
Query: 26 DPNPILTALSVCKFLISERVYAVIVSHPLTGDLSP---AAVSYTSGFYHIPVIGISSRDS 82
+ + + + ++ G + A V+ + + +P++ + +
Sbjct: 66 GNRALFSLVDRVAAARGAKPDLIL------GPVCEYAAAPVARLASHWDLPMLSAGALAA 119
Query: 83 AFSDKNIHV-SFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQ 141
F K+ R P Y+ ++ + L +H ++ + ++S D R T +
Sbjct: 120 GFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCY----FTLE 175
Query: 142 NQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLN 201
+ + + ++ F+ + + A RV +M AS I A
Sbjct: 176 GVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHG 235
Query: 202 MTETGYVWIVTE 213
MT Y + E
Sbjct: 236 MTSGDYAFFNIE 247
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics,
structural genomics consortium, SGC, CE membrane,
G-protein coupled receptor; HET: Z99; 2.26A {Homo
sapiens}
Length = 479
Score = 84.9 bits (210), Expect = 7e-18
Identities = 36/185 (19%), Positives = 74/185 (40%), Gaps = 17/185 (9%)
Query: 41 ISERVYAVIVSHPLTGDLSPA---AVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTV 97
I + VI G + V+ + IP I +S + SDK+ + F RTV
Sbjct: 113 IPLLIAGVI------GGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTV 166
Query: 98 PPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVI 157
PP +QA E+L+ FN+ V + S G + F+ ++ + + +
Sbjct: 167 PPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAE----KV 222
Query: 158 EFEPGLTTFKDQLYE-MKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQAL 216
++ + E ++ ARV +++ D+ + A N + + W+ ++
Sbjct: 223 GRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAASRANAS---FTWVASDGWG 279
Query: 217 TAKNV 221
+++
Sbjct: 280 AQESI 284
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99; 2.80A {Homo
sapiens} PDB: 2e4z_A*
Length = 481
Score = 83.7 bits (207), Expect = 2e-17
Identities = 40/209 (19%), Positives = 80/209 (38%), Gaps = 16/209 (7%)
Query: 19 SATGIQMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPA---AVSYTSGFYHIPVI 75
A + + T F+ E+V VI G + V+ + IP I
Sbjct: 92 QALIQKDTSDVRCTNGEPPVFVKPEKVVGVI------GASGSSVSIMVANILRLFQIPQI 145
Query: 76 GISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGR 135
+S SD + F R VPP S QA V+++K + V + S + G +
Sbjct: 146 SYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVES 205
Query: 136 FQTTSQNQEDDVEIKV-QVEAVIEFEPGLTTFKDQLYE--MKNAQARVYLMYASKQDAEI 192
F S+ + + Q + + T D++ + + +R +++A+ +D +
Sbjct: 206 FTQISKEAG---GLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQ 262
Query: 193 IFKDAQYLNMTETGYVWIVTEQALTAKNV 221
I A+ + ++W+ ++ + N
Sbjct: 263 ILAAAKRADQV-GHFLWVGSDSWGSKINP 290
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 79.8 bits (197), Expect = 3e-16
Identities = 36/177 (20%), Positives = 71/177 (40%), Gaps = 17/177 (9%)
Query: 42 SERVYAVIVSHPLTGDLSPA---AVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVP 98
+ VI G + V+ + IP I +S + SDK+ + F RTVP
Sbjct: 115 PLLIAGVI------GGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVP 168
Query: 99 PYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIE 158
P +QA E+L+ FN+ V + S G + F+ ++ + I + +
Sbjct: 169 PDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLR----NICIATAEKVG 224
Query: 159 FEPGLTTFKDQLYE-MKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQ 214
++ + E ++ ARV +++ D+ + A +N + W+ ++
Sbjct: 225 RSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAANRVN---ASFTWVASDG 278
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 79.1 bits (195), Expect = 5e-16
Identities = 33/199 (16%), Positives = 74/199 (37%), Gaps = 21/199 (10%)
Query: 42 SERVYAVIVSHPLTGDLSPA---AVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVP 98
+ + VI G S + V + IP I S+ SDK ++ FLR VP
Sbjct: 126 KKPIAGVI------GPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVP 179
Query: 99 PYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIE 158
+ QA ++++K +N+ V +H+ G + + F+ + + + + +
Sbjct: 180 SDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQE------GLSIAHSDK 233
Query: 159 F--EPGLTTFKDQLYEMK--NAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQ 214
G +F L +++ +ARV + + + + L + G ++
Sbjct: 234 IYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGV--VGEFSLIGSD 291
Query: 215 ALTAKNVPVGIIGLKLVNA 233
++ + ++
Sbjct: 292 GWADRDEVIEGYEVEANGG 310
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor,
NR1, ligand binding protein; 1.35A {Rattus norvegicus}
SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A*
1pb8_A 1pb9_A
Length = 292
Score = 68.1 bits (166), Expect = 6e-13
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 15/118 (12%)
Query: 354 IGEGTPRSFSARVLGMVWAGFAMIIVASYTAN--------------LAAFLVLERPKTKL 399
+ + ++ + G + +G A +IVA T N +L + T++
Sbjct: 98 VNNSNKKEWNGMM-GELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRI 156
Query: 400 TGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDAIADVK 457
TGIND RLRN + ATVK S+VD+YFRRQVELS MYR ME +NY++A +AI V+
Sbjct: 157 TGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVR 214
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo
sapiens} SCOP: j.35.1.1
Length = 27
Score = 54.0 bits (129), Expect = 3e-10
Identities = 20/26 (76%), Positives = 23/26 (88%)
Query: 331 TEEDALNLSSAIWFAWGVLLNSGIGE 356
+ DAL LSSA+WF+WGVLLNSGIGE
Sbjct: 2 SNGDALTLSSAMWFSWGVLLNSGIGE 27
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid
binding protein; branched amino acid, PSI-II, NYSGXRC,
structural genomics; 2.40A {Thermus thermophilus}
Length = 392
Score = 55.5 bits (134), Expect = 1e-08
Identities = 31/185 (16%), Positives = 50/185 (27%), Gaps = 13/185 (7%)
Query: 33 ALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVS 92
+ + V + TG IP I S N
Sbjct: 63 TQRFFEEAVDRFKIPVFL-SYATGANLQLKPLIQE--LRIPTIPASMHIELIDPPNNDYI 119
Query: 93 FLRTVPPYSHQADVWVE-LLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKV 151
F YS Q +E + + KV + GRA + + ++ E+ +
Sbjct: 120 F-LPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAAR------ELGL 172
Query: 152 QVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTET--GYVW 209
Q+ V E G L + A + I KDA+ L + G +
Sbjct: 173 QIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKMRHLGAHY 232
Query: 210 IVTEQ 214
Sbjct: 233 TGGPD 237
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC,
substrate binding P structural genomics, protein
structure initiative; 2.00A {Aeropyrum pernix}
Length = 391
Score = 47.1 bits (112), Expect = 7e-06
Identities = 27/170 (15%), Positives = 48/170 (28%), Gaps = 18/170 (10%)
Query: 38 KFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTV 97
+F V A+I T D + + I I S F
Sbjct: 70 EFRDRYGVIAII--GWGTADTEKLSDQVDT--DKITYISASYSAKLLVKPFN---F-YPA 121
Query: 98 PPYSHQADVWVE-LLKHFNYMKVIFIHSSDTD-GRALLGRFQTTSQNQEDDVEIKVQVEA 155
P YS QA + L F K+ + S R+ +G + + + +QV
Sbjct: 122 PDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRSPIGAIKKAAP------SLGLQVVG 175
Query: 156 VIEFEPGLT--TFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMT 203
+ T + EM A + ++ + + +
Sbjct: 176 DYDLPLRATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLD 225
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 3e-05
Identities = 75/486 (15%), Positives = 138/486 (28%), Gaps = 203/486 (41%)
Query: 41 ISERVYAVIVSHPLTGDLSPA-AVSYTSGFYH-------------IPVIGISSRDSAFSD 86
S R + +SH G L V T+ F+ P G ++ D +
Sbjct: 4 YSTR--PLTLSH---GSLEHVLLVP-TASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 87 KNIHVSFL----RTVPP--YSHQADVWVELLKHF--NYMKVIFIHS--------SDT--- 127
+ FL V P V L F Y++ IH+ +DT
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 128 ----------DGRALLGRFQTTSQN-------QEDDVEIKVQVEAVIEFEPG-----LTT 165
R + R N E + ++ F G
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI------F--GGQGNTDDY 169
Query: 166 FKD--QLYE---------MKNAQARVYLMYASKQDAEIIFKDAQYLNMTETGYVWIVTEQ 214
F++ LY+ +K + + + + DAE +F Q LN+ E W+
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT--QGLNILE----WLENPS 223
Query: 215 A------LTAKNVPVG--IIGL----------KLVNATNEDAHIRDSIYVLTSALKEMNQ 256
L + +P+ +IG+ KL+ T + +R + T + +
Sbjct: 224 NTPDKDYLLS--IPISCPLIGVIQLAHYVVTAKLLGFTPGE--LRSYLKGATGHSQGL-V 278
Query: 257 SAVITEAPQDCDNSGSIWETGKPSRSSTLVSFLQPFSNTL----WI-------------- 298
+AV + S WE SF + +I
Sbjct: 279 TAVAIAE------TDS-WE-----------SFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 299 --LV-------------MVSVHVVAL--VLYLLDRFSPFGRFRLSNSDNTEEDALNLSSA 341
++ M+S+ + V +++ NS + +S
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT---------NSHLPAGKQVEIS-- 369
Query: 342 IWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAF-LVLERPKTKLT 400
L+N ++ +V+ +L L L + K +
Sbjct: 370 -------LVNG------AKNL---------------VVSGPPQSLYGLNLTLRKAKAP-S 400
Query: 401 GINDAR 406
G++ +R
Sbjct: 401 GLDQSR 406
Score = 43.5 bits (102), Expect = 2e-04
Identities = 44/214 (20%), Positives = 72/214 (33%), Gaps = 58/214 (27%)
Query: 105 DVWVELLKHF-------------NYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKV 151
DVW HF N + IH G+ + R ++ E V+ K+
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI--RENYSAMIFETIVDGKL 1701
Query: 152 QVEAVI-EFEPGLT--TF---KDQLYEMKNAQARVYLM-YASKQDAE---IIFKDAQY-- 199
+ E + E T TF K L + Q + LM A+ +D + +I DA +
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 200 --LNMTETG-YVWIVTEQALTAKNVPVGII----GLKLVNA---TNEDAHIRDSIYVLTS 249
L G Y AL + ++ +++V T + A RD +
Sbjct: 1762 HSL-----GEYA------ALASLA---DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 250 ALKEMNQSAVITEAPQD-----CDNSGSIWETGK 278
+ +N V Q+ + G TG
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGK--RTGW 1839
Score = 41.6 bits (97), Expect = 5e-04
Identities = 37/192 (19%), Positives = 67/192 (34%), Gaps = 58/192 (30%)
Query: 289 LQPFSNTLW-------ILVMVSVHVVALVLYLLDRF------------------SP---F 320
+P TL +LV + +A L ++F +P
Sbjct: 6 TRPL--TLSHGSLEHVLLVPTASFFIASQLQ--EQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 321 GRF------RLSNSDNTEEDALNLSSAIW-FAWGVLLNSGIGEGTPRSFSARVLGMVWAG 373
G+F + S + D + L+ + F L + I + +A++L
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQV-LNLCLTEFENCYLEGNDI-----HALAAKLLQENDTT 115
Query: 374 FAMI--IVASYTANLAAFLVLERPKTKLTGINDARLRNTME-NLTCATVKG--SAVDMYF 428
++ +Y + A ++ +RP K + N A R E N + G D YF
Sbjct: 116 LVKTKELIKNY---ITARIMAKRPFDKKS--NSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 429 RRQVELSNMYRT 440
EL ++Y+T
Sbjct: 171 E---ELRDLYQT 179
Score = 39.6 bits (92), Expect = 0.002
Identities = 59/380 (15%), Positives = 116/380 (30%), Gaps = 122/380 (32%)
Query: 29 PILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPV-IGISSRDS--AF- 84
P++ + + ++++ ++ P G+L T + + I+ DS +F
Sbjct: 239 PLIGVIQLAHYVVTAKLLGF---TP--GELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 85 --SDKNIHVSF---LR---TVPPYSHQADVWVELLKHFN----YMKVIFIHSSDTDGRAL 132
K I V F +R P S + + L++ M I S+ +
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI----SNLTQEQV 349
Query: 133 LGRFQTTSQN--QEDDVEIKV-----QVEAVIEFEP-GLTTFKDQLYEMKNA----QARV 180
T+ + VEI + + V+ P L L + K Q+R+
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNL--VVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 181 YLMYASKQDAEIIFKDAQYLNMTE---TGYVWIVTE---QALTAKNVPVGIIGLKL-VNA 233
S++ + ++L + + + ++ + L NV +++ V
Sbjct: 408 PF---SERKLKF---SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 234 TNEDAHIRDSIYVLTSALKEMNQSAVITEAPQDCDNSGSIWETGKPSRSSTLVSFLQPFS 293
T + + +R ++ + + I P WET F
Sbjct: 462 TFDGSDLRVLSGSISERIVDC-----IIRLPVK-------WET------------TTQFK 497
Query: 294 NTLWILVMVSVHVVALVLYLLDRFSPFGRFRLSNSDNTEEDALNLSSAIWFAWGVLLNSG 353
T H+ LD FG G SG
Sbjct: 498 AT---------HI-------LD----FGP------------------------GGA--SG 511
Query: 354 IGEGTPRSFSARVLGMVWAG 373
+G T R+ + ++ AG
Sbjct: 512 LGVLTHRNKDGTGVRVIVAG 531
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell
junction, glycoprotein, ION transport channel,
magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A
2rca_A 2rcb_A
Length = 294
Score = 42.7 bits (100), Expect = 1e-04
Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 18/125 (14%)
Query: 348 VLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLA---------------AFLVL 392
++ + G ++ V G + +G A + V S++ N A +++
Sbjct: 91 IVGDGKYGAWKNGHWTGLV-GDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILV 149
Query: 393 ERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEDA 452
T+L+GI+D +L + + TV+ S+ + Y R+ M+ M N D
Sbjct: 150 RTRGTELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQS--FPEMHEYMRRYNVPATPDG 207
Query: 453 IADVK 457
+ +K
Sbjct: 208 VQYLK 212
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 2e-04
Identities = 73/507 (14%), Positives = 150/507 (29%), Gaps = 132/507 (26%)
Query: 6 NFDIQYVN---KGVTFSAT---GIQMDPNPILTALSVCKFLIS--ERVYAVIVSHPLTGD 57
NFD + V K + S I M + + L + L+S E + V L +
Sbjct: 32 NFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 58 ----LSPAAVSY--TSGFYHIPVIGISSRDSAFSDKNI----HVSFLRTVPPYSHQADVW 107
+SP S + I RD ++D + +VS R + PY +
Sbjct: 91 YKFLMSPIKTEQRQPSMMT---RMYIEQRDRLYNDNQVFAKYNVS--R-LQPY-LKLRQA 143
Query: 108 VELLKHFNYMKVIFIH--------------SSDTDGRALLGRFQ------TTSQNQEDDV 147
+ L+ + I + + +
Sbjct: 144 LLELRPAKN---VLIDGVLGSGKTWVALDVCLSYK---VQCKMDFKIFWLNLKNCNSPET 197
Query: 148 EIKVQVEAVIEFEPGLTTFKDQLYEMK------NAQARVYLMYASKQDAEIIFKDAQYLN 201
+++ + + + +P T+ D +K A+ R L ++ ++ +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN----- 252
Query: 202 MTETGYVWIVTEQALTAKNVPVGIIGLK-LVNATNEDAHIRDSIYVLTSALKEMNQ-SAV 259
V +A A N + K L+ T + D + T+ ++ S
Sbjct: 253 ------VQ--NAKAWNAFN-----LSCKILL--TTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 260 ITEAPQDCDNSGSIWETGKPSRSSTLVSFLQPFSNTLWILV------MVSVH--VVALVL 311
+T E L +++ + ++++
Sbjct: 298 LTPD-----------EV------------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 312 YLL-DRFSPFGRFRLSNSDNTE---EDALN-LSSAI----WFAWGVL-LNSGIGEGTPRS 361
+ D + + ++ N D E +LN L A + V ++ I
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI------- 387
Query: 362 FSARVLGMVWAGFAMIIVASYTANLAAF-LVLERPKTKLTGINDARLRNTMENLTCATVK 420
+L ++W V L + LV ++PK I L ++ +
Sbjct: 388 -PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 421 GSAVDMY-FRRQVELSNMYRTMEANNY 446
S VD Y + + ++ + Y
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYL-DQY 472
Score = 41.0 bits (95), Expect = 0.001
Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 19/176 (10%)
Query: 13 NKGVTFSATGIQMD---PNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGF 69
K T S I ++ AL + ++ Y + + + P Y
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALH--RSIVDH--YNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 70 --YHIPVIGISSRDSAFSDKNIHVSFLR-----TVPPYSHQADVWVELLKHFNYMKVIFI 122
+H+ I R + F + FL ++ + L + Y +I
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--YI 534
Query: 123 HSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQA 178
+D L+ E+++ I + ++ L + ++E + Q
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENL-ICSKYTDLLRI--ALMAEDEAIFEEAHKQV 587
>3snr_A Extracellular ligand-binding receptor; structural genomics,
APC102214, PSI-biology, midwest center structural
genomics, MCSG; HET: MSE TYR PHE; 1.49A
{Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A*
3ukj_A* 3tx6_A*
Length = 362
Score = 41.9 bits (99), Expect = 3e-04
Identities = 29/180 (16%), Positives = 55/180 (30%), Gaps = 14/180 (7%)
Query: 24 QMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSA 83
DP A + + ++E VI+ +T + IP I ++
Sbjct: 51 GGDPT---AATTNARRFVTESKADVIMGSSVTPPSVAISNVANE--AQIPHIALAP--LP 103
Query: 84 FSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQ 143
+ + S P V E +K N V +I SD+ G + +
Sbjct: 104 ITPERAKWSV-VMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKKQGE-- 160
Query: 144 EDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMT 203
+ +++ F T+ Q ++ A L+ AS A + +
Sbjct: 161 ----AMGLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYN 216
>3sg0_A Extracellular ligand-binding receptor; structural genomics,
PSI-biology; HET: 173; 1.20A {Rhodopseudomonas
palustris} PDB: 4dqd_A*
Length = 386
Score = 39.3 bits (92), Expect = 0.002
Identities = 24/182 (13%), Positives = 57/182 (31%), Gaps = 14/182 (7%)
Query: 24 QMDPNPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSA 83
+ DP A + L+SE V++ LT P P++ +++
Sbjct: 71 ESDPT---KAAQNARKLLSEEKVDVLIGSSLTPVSLPLIDIAAE--AKTPLMTMAAAAIL 125
Query: 84 F--SDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQ 141
D+ + + VP A+ + + KV +I SD G +
Sbjct: 126 VAPMDERRKWVY-KVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAP 184
Query: 142 NQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLN 201
++ ++ + + Q+ ++ + + ++ A + K +
Sbjct: 185 ------KLGFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERG 238
Query: 202 MT 203
Sbjct: 239 FK 240
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 32.5 bits (74), Expect = 0.055
Identities = 11/59 (18%), Positives = 27/59 (45%)
Query: 336 LNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLER 394
L A++F+ L G G+ +P++ ++ +++ + +V + LA + L
Sbjct: 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 89
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 32.6 bits (74), Expect = 0.11
Identities = 16/74 (21%), Positives = 31/74 (41%)
Query: 341 AIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLT 400
A++F+ L G G +P++ +V +++ + +V + LA + L +
Sbjct: 56 ALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRK 115
Query: 401 GINDARLRNTMENL 414
DA ME L
Sbjct: 116 KETDAYRLEVMEKL 129
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 31.4 bits (71), Expect = 0.17
Identities = 11/59 (18%), Positives = 26/59 (44%)
Query: 336 LNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLER 394
L A++F+ L G G +P++ ++ +++ + +V + LA + L
Sbjct: 48 LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106
>4evq_A Putative ABC transporter subunit, substrate-bindi component;
structural genomics, PSI-biology, midwest center for
structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas
palustris} PDB: 4evr_A
Length = 375
Score = 30.8 bits (70), Expect = 0.85
Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 9/166 (5%)
Query: 38 KFLISERVYAVIVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTV 97
K + SE+ V++ +G IP I ++ + + RT
Sbjct: 76 KLIQSEKA-DVLIGTVHSGVAMAMVKIARE--DGIPTIVPNAGADIITRAMCAPNVFRTS 132
Query: 98 PPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVI 157
+ + K + + G ++ F+ + K +V I
Sbjct: 133 FANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFT------AGKGEVVKDI 186
Query: 158 EFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMT 203
F+ L E+ + + + S A KD N+
Sbjct: 187 TIAFPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLG 232
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and
osmosensor, secondary TRAN sodium coupled transport;
HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB:
4doj_A* 2w8a_A 2wit_A 3p03_A
Length = 539
Score = 30.4 bits (69), Expect = 1.4
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 273 IWETGKPSRSSTLVSFLQPF--SNTLWILVMVSVHVVALVLYLLDRFSPFGRFRLSNSDN 330
+W G + S N W ++ V ++ + S FG RL D
Sbjct: 35 VWGIGFKDSFTNFASSALSAVVDNLGWAFILFGTVFVFFIVVIA--ASKFGTIRLGRIDE 92
Query: 331 TEEDALNLSSAIWFAWGVLLNSGIGEG 357
E + W + ++ +G+G G
Sbjct: 93 APE----FRTVSWIS--MMFAAGMGIG 113
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
transhydrogenase domain I, oxidoreductase; 1.81A
{Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Length = 384
Score = 29.9 bits (68), Expect = 1.6
Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 236 EDAHIRDSIY------VLTSALKEMNQSAVITEAPQDCDNSGSIWETGKPSRSSTLVSFL 289
A I D + ++A + ++Q+ V+ + + E + L+ L
Sbjct: 41 VGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHL 100
Query: 290 QPFSNTLWILVMVSVHVVALVLYLLDRFS 318
+N + + + A + L+ R S
Sbjct: 101 GALTNRPVVEALTKRKITAYAMELMPRIS 129
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 30.0 bits (67), Expect = 1.7
Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 5/96 (5%)
Query: 67 SGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVW---VELLKHFNYMKVIFIH 123
S Y F+D F + + Y + +W ++ K I +
Sbjct: 64 SSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFN 123
Query: 124 SS--DTDGRALLGRFQTTSQNQEDDVEIKVQVEAVI 157
++ + F T Q+ D + + V+
Sbjct: 124 TAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVV 159
>3r9f_A MCCE protein; microcin C7, acetyltransferase, SELF immunity,
resistance, A coenzyme A, transferase; HET: COA GSU;
1.20A {Escherichia coli} PDB: 3r95_A* 3r96_A* 3r9e_A*
3r9g_A*
Length = 188
Score = 29.2 bits (66), Expect = 1.8
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 186 SKQDAEIIFKDAQYLNMTETGYVWIVTEQALTAKNVPVGIIGLKLVNATNEDAHI 240
+ D+ + + N E + + K G++ +++ N+ A+I
Sbjct: 58 NISDSVSFIEQSMIDNQNEKALILFIKY-----KTKIAGVVSFNIIDHANKTAYI 107
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 29.7 bits (66), Expect = 1.9
Identities = 21/118 (17%), Positives = 40/118 (33%)
Query: 281 RSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFRLSNSDNTEEDALNLSS 340
S +L TL L V VL+LL + + L ++ +
Sbjct: 22 LGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGG 81
Query: 341 AIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTK 398
A +F+ L G G+ P++ A + + M +A T + + + +
Sbjct: 82 AFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKRAE 139
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain
interacting protein, DCAF14 DDB1 and CUL4 associated
factor 14, SGC; 2.25A {Homo sapiens}
Length = 135
Score = 28.5 bits (64), Expect = 2.1
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 434 LSNMYRTMEANNYDTAEDAIADVK 457
+ + T+EA NY++ + DV+
Sbjct: 64 FATVRETLEAGNYESPMELCKDVR 87
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 29.3 bits (65), Expect = 2.8
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 10/117 (8%)
Query: 287 SFLQPFSNTL----WILVMVSVHVVALVLYLLDRFSPFGRFRLSNSDNTEEDAL-NLSSA 341
+L + L W + + + + LV L F L+ D E + + A
Sbjct: 32 GWLDDHYHDLLTVSWPVFITLITGLYLVTNAL-----FALAYLACGDVIENARPGSFTDA 86
Query: 342 IWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTK 398
+F+ + G G+ P A L + A M+ +A + + A
Sbjct: 87 FFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPTAGVL 143
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 29.0 bits (64), Expect = 3.1
Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 2/122 (1%)
Query: 287 SFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFRLSNSDNTEEDALNLSSAIWFAW 346
S + + L++++ ++L ++ + A +F+
Sbjct: 46 SVWRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSV 105
Query: 347 GVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLTGINDAR 406
L G G+ P++ A + + M +A T + A RP+ K+ A
Sbjct: 106 ETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA--RPRAKIMFARHAI 163
Query: 407 LR 408
+R
Sbjct: 164 VR 165
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Length = 101
Score = 27.7 bits (62), Expect = 3.2
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 35 SVCKFLISERVYAVIVSHPLTGDLSPAA---VSYTSGFYHIPVIGISSRD 81
V K + + +V VI+S D + G Y IPV + +R
Sbjct: 25 QVVKAVQNGQVTLVILSS----DAGIHTKKKLLDKCGSYQIPVKVVGNRQ 70
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics
consortium, SGC, cell cycle progression, signal
transduction, apoptosis; 1.74A {Homo sapiens}
Length = 123
Score = 27.7 bits (62), Expect = 4.0
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 434 LSNMYRTMEANNYDTAEDAIADVK 457
+ T++A NYD+ + D++
Sbjct: 53 FGTVRETLDAGNYDSPLEFCKDIR 76
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP,
crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST,
bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens}
PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A*
1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Length = 119
Score = 27.3 bits (61), Expect = 4.3
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 434 LSNMYRTMEANNYDTAEDAIADVK 457
LS + R ++ Y + DV
Sbjct: 57 LSTIKRKLDTGQYQEPWQYVDDVW 80
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor
and arginine permease...; endosomes, trafficking
complex, vacuole protei sorting, ESCRT protein
complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae}
SCOP: a.2.17.1 PDB: 2f66_A*
Length = 65
Score = 26.3 bits (58), Expect = 4.7
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 230 LVNATNEDAHIRDSIYVLTSALKE 253
L N +D + D+I L+ L
Sbjct: 8 LYNLVAQDYALTDTIEALSRMLHR 31
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport
protein, SD methionine, membrane protein; HET: CM5 1PE;
2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Length = 509
Score = 28.8 bits (65), Expect = 4.9
Identities = 11/87 (12%), Positives = 29/87 (33%), Gaps = 12/87 (13%)
Query: 273 IWETGKPSRSSTLVSFLQPF--SNTLWILVMVSVHVVALVLYLLDRFSPFGRFRLSNSDN 330
S+ +++ + + + W V + +L+ F + + RL +
Sbjct: 32 WLTVRDLDASNEVINAVFSYVTNVWGWAFEWYMVIMFGGWFWLV--FGRYAKKRLGD--- 86
Query: 331 TEEDALNLSSAIWFAWGVLLNSGIGEG 357
E+ + +S W ++ S
Sbjct: 87 -EKPEFSTAS--WIF--MMFASCTSAA 108
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic,
transport protein; 1.90A {Salmonella enterica} PDB:
3r39_A 4f3s_A
Length = 259
Score = 28.1 bits (63), Expect = 5.6
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 382 YTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTM 441
Y N + + K L +N+ + + +G A + +E Y
Sbjct: 112 YYINSFYLVSMANHKITLNNLNE------LNKYSIGYPRGMAYSDLIKNDLEPKGYYSLS 165
Query: 442 EANNYDTAEDAIADVK 457
+ Y T + +AD+K
Sbjct: 166 KVKLYPTYNETMADLK 181
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.89A {Homo
sapiens} PDB: 2yem_A*
Length = 130
Score = 26.9 bits (60), Expect = 6.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 434 LSNMYRTMEANNYDTAEDAIADVK 457
+S + +EA Y A++ ADV+
Sbjct: 70 MSTIKSKLEAREYRDAQEFGADVR 93
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2,
KIAA1 WALP4, structural genomics consortium, SGC,
transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Length = 117
Score = 26.9 bits (60), Expect = 7.7
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 434 LSNMYRTMEANNYDTAEDAIADVK 457
S + + + Y E DV+
Sbjct: 56 FSTIREKLSSGQYPNLETFALDVR 79
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn
binding, K-turn RNA, hypothetical R protein, RNA
binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Length = 101
Score = 26.5 bits (59), Expect = 7.8
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 35 SVCKFLISERVYAVIVSHPLTGDLSPAA---VSYTSGFYHIPVIGISSRD 81
V K + + R V+++ D S V+ +Y +P + SR
Sbjct: 26 LVIKEIRNARAKLVLLTE----DASSNTAKKVTDKCNYYKVPYKKVESRA 71
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine
binding domain, signaling protein; 1.20A {Mus musculus}
PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A
3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Length = 120
Score = 26.9 bits (60), Expect = 8.0
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 434 LSNMYRTMEANNYDTAEDAIADVK 457
+S + +E+ Y A++ ADV+
Sbjct: 57 MSTIKSKLESREYRDAQEFGADVR 80
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.89A {Listeria innocua}
Length = 349
Score = 27.7 bits (61), Expect = 8.2
Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 23/101 (22%)
Query: 193 IFKDAQYLNMTETGYVWIVTEQALTAKNVPVGIIGLK----------------------- 229
+ +YL Y W V GI L+
Sbjct: 165 ELNETKYLEWAMKTYEWQTKVLVREDGFVEDGINRLEDGTIDYEWKFTYNQGVYIGANLE 224
Query: 230 LVNATNEDAHIRDSIYVLTSALKEMNQSAVITEAPQDCDNS 270
L T E ++ + +LKE+ + + + D
Sbjct: 225 LYRITKEAIYLDTANKTAAISLKELTEDGIFKDEGNGGDEG 265
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer,
proton pumping, membrane protein, cell inner membrane,
cell membrane, copper; HET: HEA LDA LMT; 2.25A
{Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Length = 298
Score = 27.8 bits (62), Expect = 8.4
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 295 TLWILVMVSVHVVALVLYLLDRFSPF-GRFRLSNSDNTE 332
L+I+ V++ V L+L + RF+ + NT
Sbjct: 67 VLYIITAVTIFVCLLLLICIVRFNRRANPVPARFTHNTP 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.386
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,847,220
Number of extensions: 408334
Number of successful extensions: 885
Number of sequences better than 10.0: 1
Number of HSP's gapped: 862
Number of HSP's successfully gapped: 61
Length of query: 458
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 361
Effective length of database: 3,993,456
Effective search space: 1441637616
Effective search space used: 1441637616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.8 bits)