RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17441
(458 letters)
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 477
Score = 67.7 bits (164), Expect = 8e-13
Identities = 42/260 (16%), Positives = 86/260 (33%), Gaps = 13/260 (5%)
Query: 62 AVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIF 121
V + IP I S+ SDK ++ FLR VP + QA ++++K +N+ V
Sbjct: 135 QVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSA 194
Query: 122 IHSSDTDGRALLGRFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKN--AQAR 179
+H+ G + + F+ + + + + I G +F L +++ +AR
Sbjct: 195 VHTEGNYGESGMDAFKELAAQE----GLCIAHSDKIYSNAGEKSFDRLLRKLRERLPKAR 250
Query: 180 VYLMYASKQDAEIIFKDAQYLNMTETGYVWI----VTEQALTAKNVPVGIIGLKLVNATN 235
V + + + + L + + + G+ + +
Sbjct: 251 VVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSP 310
Query: 236 EDAHIRDSIYVLTSALKEMNQS-AVITEAPQDCDNSGSIWETGKPSRSSTLVSFLQPFSN 294
E D L N + C G + E + T L+
Sbjct: 311 EVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKKVCTGNESLEENYV 370
Query: 295 TLWILVMV--SVHVVALVLY 312
+ V +++ +A L
Sbjct: 371 QDSKMGFVINAIYAMAHGLQ 390
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial
natriuretic peptide receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 425
Score = 56.7 bits (135), Expect = 2e-09
Identities = 32/287 (11%), Positives = 76/287 (26%), Gaps = 18/287 (6%)
Query: 28 NPILTALSVCKFLISERVYAVIVSHPLTGDLSPAAVSYTSGF---YHIPVIGISSRDSAF 84
+ L+ + G + + F + +P++ +
Sbjct: 61 SDTAAPLAAVDLKWEHSPAVFL------GPGCVYSAAPVGRFTAHWRVPLLTAGAPALGI 114
Query: 85 SDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQE 144
K+ + RT P + D L + + + +D G F
Sbjct: 115 GVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCFFIVEGLYMR 174
Query: 145 DDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIFKDAQYLNMTE 204
+ + V EF G +L + RV + +S + A +T
Sbjct: 175 VRERLNITV-NHQEFVEGDPDHYPKLLRAVRRKGRVIYICSSPDAFRNLMLLALNAGLTG 233
Query: 205 TGYVWIVTEQALTAKNVPVGIIGLKLVNATNEDAHIRDSIYVLTSALKEMNQSAVITEAP 264
YV+ + + G++ K D R + +A + + P
Sbjct: 234 EDYVFFHLDVFGQSLKSAQGLVPQKPWERG--DGQDRSARQAFQAAK------IITYKEP 285
Query: 265 QDCDNSGSIWETGKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVL 311
+ + + + + + N + + + +
Sbjct: 286 DNPEYLEFLKQLKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAV 332
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 36.4 bits (84), Expect = 8e-04
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 292 FSNTLWILVMVSVHVVALVLYLLDRFSPFGRFRLSNSDNTEEDALNLSSAIWFAWGVLLN 351
+LV+V + + + L +R +P + A+W++
Sbjct: 8 AGAATVLLVIVLL-AGSYLAVLAERGAPGAQLI------------TYPRALWWSVETATT 54
Query: 352 SGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTK 398
G G+ P + R + +V + TA LA + V + +
Sbjct: 55 VGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERR 101
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 35.1 bits (81), Expect = 0.002
Identities = 10/93 (10%), Positives = 27/93 (29%), Gaps = 19/93 (20%)
Query: 298 ILVMVSVHVVALVLYLLDRFSPFGRFRLSNSDNTEEDALNLSSAIWFAWGVLLNSGIGEG 357
+LV+ + + ++ S ++++ + + G G+
Sbjct: 7 LLVLAVIIYGTAGFHFIEGESWT-------------------VSLYWTFVTIATVGYGDY 47
Query: 358 TPRSFSARVLGMVWAGFAMIIVASYTANLAAFL 390
+P + + + A L FL
Sbjct: 48 SPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated
protein 23, VPS23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 64
Score = 25.8 bits (57), Expect = 2.3
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 230 LVNATNEDAHIRDSIYVLTSALKE 253
L N +D + D+I L+ L
Sbjct: 7 LYNLVAQDYALTDTIEALSRMLHR 30
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 162
Score = 26.4 bits (58), Expect = 6.1
Identities = 8/95 (8%), Positives = 30/95 (31%), Gaps = 5/95 (5%)
Query: 84 FSDKNIHVSFLRTVPPYSHQADVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNQ 143
+ +I + H + + L ++ + + + ++ + +
Sbjct: 63 IRNLDIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIVLISSKYDAEATAE 122
Query: 144 EDDVEIKVQ-----VEAVIEFEPGLTTFKDQLYEM 173
+V ++ + V+ F + D++ M
Sbjct: 123 LVEVARDLKRDRNDIPEVMIFSDSIYVKDDEVMLM 157
>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId:
1542]}
Length = 540
Score = 26.4 bits (58), Expect = 9.2
Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 12/128 (9%)
Query: 78 SSRDSAFSDKNIHVSFLRTVPPYSHQ--ADVWVELLKHFNYMKVIFIHSSDTDGRALL-G 134
+SR S + KN+ ++ ++W K +N +F D +LL
Sbjct: 88 NSRTSTIASKNLSFIWIGGPISDQSLEYYNMWKMFNKDYNIR--LFY-----DKNSLLVN 140
Query: 135 RFQTTSQNQEDDVEIKVQVEAVIEFEPGLTTFKDQLYEMKNAQARVYLMYASKQDAEIIF 194
+T + V I+ +++ G F ++ R M
Sbjct: 141 TLKTAIIQESSKVIIEQNQSNILDGTYGHNKFYSDRMKLIYRYKRELKMLYENMKQNNSV 200
Query: 195 KDA--QYL 200
D +L
Sbjct: 201 DDIIINFL 208
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.386
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,621,419
Number of extensions: 72115
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 9
Length of query: 458
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 370
Effective length of database: 1,199,356
Effective search space: 443761720
Effective search space used: 443761720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)