BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17442
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B4MU83|NMDA1_DROWI Glutamate [NMDA] receptor subunit 1 OS=Drosophila willistoni
GN=Nmdar1 PE=3 SV=1
Length = 982
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/58 (87%), Positives = 56/58 (96%)
Query: 19 KLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHES 76
KLMAFIWDSSRL++EA++DCELVTAGELFGRSGY IGLQKGSPW DAVTLAIL+FHES
Sbjct: 728 KLMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHES 785
>sp|B3P2E5|NMDA1_DROER Glutamate [NMDA] receptor subunit 1 OS=Drosophila erecta GN=Nmdar1
PE=3 SV=1
Length = 997
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/68 (79%), Positives = 60/68 (88%), Gaps = 4/68 (5%)
Query: 19 KLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTV 78
KLMAFIWDSSRL++EA++DCELVTAGELFGRSGY IGLQKGSPW DAVTLAIL+FHES
Sbjct: 740 KLMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESG- 798
Query: 79 CYLFMAKV 86
FM K+
Sbjct: 799 ---FMEKL 803
>sp|B4QWW7|NMDA1_DROSI Glutamate [NMDA] receptor subunit 1 OS=Drosophila simulans
GN=Nmdar1 PE=3 SV=1
Length = 997
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/68 (79%), Positives = 60/68 (88%), Gaps = 4/68 (5%)
Query: 19 KLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTV 78
KLMAFIWDSSRL++EA++DCELVTAGELFGRSGY IGLQKGSPW DAVTLAIL+FHES
Sbjct: 740 KLMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESG- 798
Query: 79 CYLFMAKV 86
FM K+
Sbjct: 799 ---FMEKL 803
>sp|B4I414|NMDA1_DROSE Glutamate [NMDA] receptor subunit 1 OS=Drosophila sechellia
GN=Nmdar1 PE=3 SV=1
Length = 997
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/68 (79%), Positives = 60/68 (88%), Gaps = 4/68 (5%)
Query: 19 KLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTV 78
KLMAFIWDSSRL++EA++DCELVTAGELFGRSGY IGLQKGSPW DAVTLAIL+FHES
Sbjct: 740 KLMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESG- 798
Query: 79 CYLFMAKV 86
FM K+
Sbjct: 799 ---FMEKL 803
>sp|B4PVB0|NMDA1_DROYA Glutamate [NMDA] receptor subunit 1 OS=Drosophila yakuba GN=Nmdar1
PE=3 SV=1
Length = 997
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/68 (79%), Positives = 60/68 (88%), Gaps = 4/68 (5%)
Query: 19 KLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTV 78
KLMAFIWDSSRL++EA++DCELVTAGELFGRSGY IGLQKGSPW DAVTLAIL+FHES
Sbjct: 740 KLMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESG- 798
Query: 79 CYLFMAKV 86
FM K+
Sbjct: 799 ---FMEKL 803
>sp|B3LZ39|NMDA1_DROAN Glutamate [NMDA] receptor subunit 1 OS=Drosophila ananassae
GN=Nmdar1 PE=3 SV=1
Length = 994
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/68 (79%), Positives = 60/68 (88%), Gaps = 4/68 (5%)
Query: 19 KLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTV 78
KLMAFIWDSSRL++EA++DCELVTAGELFGRSGY IGLQKGSPW DAVTLAIL+FHES
Sbjct: 737 KLMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESG- 795
Query: 79 CYLFMAKV 86
FM K+
Sbjct: 796 ---FMEKL 800
>sp|Q24418|NMDA1_DROME Glutamate [NMDA] receptor subunit 1 OS=Drosophila melanogaster
GN=Nmdar1 PE=1 SV=1
Length = 997
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/68 (79%), Positives = 60/68 (88%), Gaps = 4/68 (5%)
Query: 19 KLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTV 78
KLMAFIWDSSRL++EA++DCELVTAGELFGRSGY IGLQKGSPW DAVTLAIL+FHES
Sbjct: 740 KLMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESG- 798
Query: 79 CYLFMAKV 86
FM K+
Sbjct: 799 ---FMEKL 803
>sp|B4JHV0|NMDA1_DROGR Glutamate [NMDA] receptor subunit 1 OS=Drosophila grimshawi
GN=Nmdar1 PE=3 SV=1
Length = 982
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/68 (79%), Positives = 60/68 (88%), Gaps = 4/68 (5%)
Query: 19 KLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTV 78
KLMAFIWDSSRL++EA++DCELVTAGELFGRSGY IGLQKGSPW DAVTLAIL+FHES
Sbjct: 735 KLMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESG- 793
Query: 79 CYLFMAKV 86
FM K+
Sbjct: 794 ---FMEKL 798
>sp|B4KD90|NMDA1_DROMO Glutamate [NMDA] receptor subunit 1 OS=Drosophila mojavensis
GN=Nmdar1 PE=3 SV=1
Length = 980
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/68 (79%), Positives = 60/68 (88%), Gaps = 4/68 (5%)
Query: 19 KLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTV 78
KLMAFIWDSSRL++EA++DCELVTAGELFGRSGY IGLQKGSPW DAVTLAIL+FHES
Sbjct: 737 KLMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESG- 795
Query: 79 CYLFMAKV 86
FM K+
Sbjct: 796 ---FMEKL 800
>sp|B4GF83|NMDA1_DROPE Glutamate [NMDA] receptor subunit 1 OS=Drosophila persimilis
GN=Nmdar1 PE=3 SV=1
Length = 1004
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 60/68 (88%), Gaps = 4/68 (5%)
Query: 19 KLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTV 78
KLMAFIWDSSRL++EA++DCELVTAGELFGRSGY +GLQKGSPW D+VTLAIL+FHES
Sbjct: 752 KLMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGVGLQKGSPWTDSVTLAILEFHESG- 810
Query: 79 CYLFMAKV 86
FM K+
Sbjct: 811 ---FMEKL 815
>sp|Q296F7|NMDA1_DROPS Glutamate [NMDA] receptor subunit 1 OS=Drosophila pseudoobscura
pseudoobscura GN=Nmdar1 PE=3 SV=1
Length = 1004
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 60/68 (88%), Gaps = 4/68 (5%)
Query: 19 KLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTV 78
KLMAFIWDSSRL++EA++DCELVTAGELFGRSGY +GLQKGSPW D+VTLAIL+FHES
Sbjct: 752 KLMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGVGLQKGSPWTDSVTLAILEFHESG- 810
Query: 79 CYLFMAKV 86
FM K+
Sbjct: 811 ---FMEKL 815
>sp|B4LZB5|NMDA1_DROVI Glutamate [NMDA] receptor subunit 1 OS=Drosophila virilis GN=Nmdar1
PE=3 SV=1
Length = 984
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 59/68 (86%), Gaps = 4/68 (5%)
Query: 19 KLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTV 78
KLMAFIWDSSRL++EA++DCELVTAGELFGRSGY +GLQKGSPW DAVTL IL+FHES
Sbjct: 737 KLMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGVGLQKGSPWTDAVTLTILEFHESG- 795
Query: 79 CYLFMAKV 86
FM K+
Sbjct: 796 ---FMEKL 800
>sp|Q5R1P0|NMDZ1_CANFA Glutamate receptor ionotropic, NMDA 1 OS=Canis familiaris GN=GRIN1
PE=2 SV=2
Length = 943
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 19 KLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHES 76
KL AFIWDS+ L+FEA+Q C+LVT GELF RSG+ IG++K SPW V+L+IL HE+
Sbjct: 746 KLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHEN 803
>sp|Q05586|NMDZ1_HUMAN Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1
SV=1
Length = 938
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 19 KLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHES 76
KL AFIWDS+ L+FEA+Q C+LVT GELF RSG+ IG++K SPW V+L+IL HE+
Sbjct: 725 KLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHEN 782
>sp|P35438|NMDZ1_MOUSE Glutamate receptor ionotropic, NMDA 1 OS=Mus musculus GN=Grin1 PE=1
SV=1
Length = 938
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 18 KKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHES 76
KL AFIWDS+ L+FEA+Q C+LVT GELF RSG+ IG++K SPW V+L+IL HE+
Sbjct: 724 NKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHEN 782
>sp|P35439|NMDZ1_RAT Glutamate receptor ionotropic, NMDA 1 OS=Rattus norvegicus GN=Grin1
PE=1 SV=1
Length = 938
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 19 KLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHES 76
KL AFIWDS+ L+FEA+Q C+LVT GELF RSG+ IG++K SPW V+L+IL HE+
Sbjct: 725 KLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHEN 782
>sp|Q00959|NMDE1_RAT Glutamate receptor ionotropic, NMDA 2A OS=Rattus norvegicus
GN=Grin2a PE=1 SV=2
Length = 1464
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 2 RFDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD--CELVT--AGELFGRSGYAIGLQ 57
RF+ + +V T KL AFI+D++ L+++A +D C+LVT +G +F +GY I LQ
Sbjct: 707 RFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFASTGYGIALQ 766
Query: 58 KGSPWADAVTLAILDF 73
KGSPW + LA+L F
Sbjct: 767 KGSPWKRQIDLALLQF 782
>sp|Q5IS45|NMDE1_PANTR Glutamate receptor ionotropic, NMDA 2A OS=Pan troglodytes GN=GRIN2A
PE=2 SV=1
Length = 1464
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 2 RFDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD--CELVT--AGELFGRSGYAIGLQ 57
+F+ K +V T KL AFI+D++ L+++A +D C+LVT +G +F +GY I LQ
Sbjct: 707 KFNQKGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQ 766
Query: 58 KGSPWADAVTLAILDF 73
KGSPW + LA+L F
Sbjct: 767 KGSPWKRQIDLALLQF 782
>sp|Q12879|NMDE1_HUMAN Glutamate receptor ionotropic, NMDA 2A OS=Homo sapiens GN=GRIN2A
PE=1 SV=1
Length = 1464
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 2 RFDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD--CELVT--AGELFGRSGYAIGLQ 57
+F+ K +V T KL AFI+D++ L+++A +D C+LVT +G +F +GY I LQ
Sbjct: 707 KFNQKGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQ 766
Query: 58 KGSPWADAVTLAILDF 73
KGSPW + LA+L F
Sbjct: 767 KGSPWKRQIDLALLQF 782
>sp|P35436|NMDE1_MOUSE Glutamate receptor ionotropic, NMDA 2A OS=Mus musculus GN=Grin2a
PE=1 SV=2
Length = 1464
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 2 RFDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD--CELVT--AGELFGRSGYAIGLQ 57
+F+ + +V T KL AFI+D++ L+++A +D C+LVT +G +F +GY I LQ
Sbjct: 707 KFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQ 766
Query: 58 KGSPWADAVTLAILDF 73
KGSPW + LA+L F
Sbjct: 767 KGSPWKRQIDLALLQF 782
>sp|Q91755|GRIK2_XENLA Glutamate receptor ionotropic, kainate 2 (Fragment) OS=Xenopus
laevis GN=grik2 PE=2 SV=1
Length = 285
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 22 AFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYL 81
AF+ +S+ ++F ++C L G L GY +G GSP+ D +T+AIL E V ++
Sbjct: 111 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGVLHM 170
Query: 82 FMAK 85
K
Sbjct: 171 MKEK 174
>sp|Q13224|NMDE2_HUMAN Glutamate receptor ionotropic, NMDA 2B OS=Homo sapiens GN=GRIN2B
PE=1 SV=3
Length = 1484
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 17 TKKLMAFIWDSSRLDFEAAQD--CELVT--AGELFGRSGYAIGLQKGSPWADAVTLAILD 72
T KL AFI+D++ L++ A +D C+LVT +G++F +GY I +QK S W V LAIL
Sbjct: 723 TGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFASTGYGIAIQKDSGWKRQVDLAILQ 782
Query: 73 F 73
Sbjct: 783 L 783
>sp|Q01098|NMDE3_MOUSE Glutamate receptor ionotropic, NMDA 2C OS=Mus musculus GN=Grin2c
PE=2 SV=2
Length = 1239
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 4/59 (6%)
Query: 19 KLMAFIWDSSRLDFEAAQD--CELVT--AGELFGRSGYAIGLQKGSPWADAVTLAILDF 73
KL AFI+D++ L++ A +D C+LVT +G++F +GY I +QK S W A+ LA+L F
Sbjct: 722 KLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIAMQKDSHWKRAIDLALLQF 780
>sp|Q00960|NMDE2_RAT Glutamate receptor ionotropic, NMDA 2B OS=Rattus norvegicus
GN=Grin2b PE=1 SV=1
Length = 1482
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 17 TKKLMAFIWDSSRLDFEAAQD--CELVT--AGELFGRSGYAIGLQKGSPWADAVTLAILD 72
T KL AFI+D++ L++ A +D C+LVT +G++F +GY I +QK S W V LAIL
Sbjct: 723 TGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFASTGYGIAIQKDSGWKRQVDLAILQ 782
Query: 73 F 73
Sbjct: 783 L 783
>sp|Q01097|NMDE2_MOUSE Glutamate receptor ionotropic, NMDA 2B OS=Mus musculus GN=Grin2b
PE=1 SV=3
Length = 1482
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 17 TKKLMAFIWDSSRLDFEAAQD--CELVT--AGELFGRSGYAIGLQKGSPWADAVTLAILD 72
T KL AFI+D++ L++ A +D C+LVT +G++F +GY I +QK S W V LAIL
Sbjct: 723 TGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFASTGYGIAIQKDSGWKRQVDLAILQ 782
Query: 73 F 73
Sbjct: 783 L 783
>sp|Q5R1P3|NMDE2_CANFA Glutamate receptor ionotropic, NMDA 2B OS=Canis familiaris
GN=GRIN2B PE=2 SV=1
Length = 1485
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 17 TKKLMAFIWDSSRLDFEAAQD--CELVT--AGELFGRSGYAIGLQKGSPWADAVTLAILD 72
T KL AFI+D++ L++ A +D C+LVT +G++F +GY I +QK S W V LAIL
Sbjct: 723 TGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFASTGYGIAIQKDSGWKRQVDLAILQ 782
Query: 73 F 73
Sbjct: 783 L 783
>sp|Q14957|NMDE3_HUMAN Glutamate receptor ionotropic, NMDA 2C OS=Homo sapiens GN=GRIN2C
PE=2 SV=3
Length = 1233
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 4/59 (6%)
Query: 19 KLMAFIWDSSRLDFEAAQD--CELVT--AGELFGRSGYAIGLQKGSPWADAVTLAILDF 73
KL AFI+D++ L++ A +D C+LVT +G++F +GY I +QK S W A+ LA+L F
Sbjct: 722 KLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIAMQKDSHWKRAIDLALLQF 780
>sp|Q03391|NMDE4_MOUSE Glutamate receptor ionotropic, NMDA 2D OS=Mus musculus GN=Grin2d
PE=1 SV=3
Length = 1323
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 19 KLMAFIWDSSRLDFEAAQD--CELVT--AGELFGRSGYAIGLQKGSPWADAVTLAILDF 73
KL AFI+D++ L++ A +D C+LVT +G++F +GY I L KGS W + LA+L F
Sbjct: 749 KLDAFIYDAAVLNYMARKDEGCKLVTIGSGKVFATTGYGIALHKGSRWKRPIDLALLQF 807
>sp|Q62645|NMDE4_RAT Glutamate receptor ionotropic, NMDA 2D OS=Rattus norvegicus
GN=Grin2d PE=1 SV=2
Length = 1323
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 19 KLMAFIWDSSRLDFEAAQD--CELVT--AGELFGRSGYAIGLQKGSPWADAVTLAILDF 73
KL AFI+D++ L++ A +D C+LVT +G++F +GY I L KGS W + LA+L F
Sbjct: 749 KLDAFIYDAAVLNYMARKDEGCKLVTIGSGKVFATTGYGIALHKGSRWKRPIDLALLQF 807
>sp|O15399|NMDE4_HUMAN Glutamate receptor ionotropic, NMDA 2D OS=Homo sapiens GN=GRIN2D
PE=2 SV=2
Length = 1336
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 19 KLMAFIWDSSRLDFEAAQD--CELVT--AGELFGRSGYAIGLQKGSPWADAVTLAILDF 73
KL AFI+D++ L++ A +D C+LVT +G++F +GY I L KGS W + LA+L F
Sbjct: 752 KLDAFIYDAAVLNYMARKDEGCKLVTIGSGKVFATTGYGIALHKGSRWKRPIDLALLQF 810
>sp|P42260|GRIK2_RAT Glutamate receptor ionotropic, kainate 2 OS=Rattus norvegicus
GN=Grik2 PE=1 SV=2
Length = 908
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 22 AFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYL 81
AF+ +S+ ++F ++C L G L GY +G GSP+ D +T+AIL E ++
Sbjct: 734 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHM 793
Query: 82 FMAK 85
K
Sbjct: 794 MKEK 797
>sp|P39087|GRIK2_MOUSE Glutamate receptor ionotropic, kainate 2 OS=Mus musculus GN=Grik2
PE=1 SV=4
Length = 908
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 22 AFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYL 81
AF+ +S+ ++F ++C L G L GY +G GSP+ D +T+AIL E ++
Sbjct: 734 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHM 793
Query: 82 FMAK 85
K
Sbjct: 794 MKEK 797
>sp|Q13002|GRIK2_HUMAN Glutamate receptor ionotropic, kainate 2 OS=Homo sapiens GN=GRIK2
PE=1 SV=1
Length = 908
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 22 AFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYL 81
AF+ +S+ ++F ++C L G L GY +G GSP+ D +T+AIL E ++
Sbjct: 734 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHM 793
Query: 82 FMAK 85
K
Sbjct: 794 MKEK 797
>sp|Q38PU3|GRIK2_MACFA Glutamate receptor ionotropic, kainate 2 OS=Macaca fascicularis
GN=GRIK2 PE=2 SV=1
Length = 908
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 22 AFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYL 81
AF+ +S+ ++F ++C L G L GY +G GSP+ D +T+AIL E ++
Sbjct: 734 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHM 793
Query: 82 FMAK 85
K
Sbjct: 794 MKEK 797
>sp|Q9R1M7|NMD3A_RAT Glutamate receptor ionotropic, NMDA 3A OS=Rattus norvegicus
GN=Grin3a PE=1 SV=1
Length = 1135
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 2 RFDVKFSPSTV--VRHGTKKLMAFIWDSSRLDFEAA--QDCELVTAGELFGRSGYAIGLQ 57
R++V +P V +++ +KL AFI D + LD+E + DC+L+T G+ F GY IGL
Sbjct: 819 RYNVPATPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLP 878
Query: 58 KGSPWADAVTLAILDF 73
SP ++ I +
Sbjct: 879 PNSPLTSNISELISQY 894
>sp|Q00961|NMDE3_RAT Glutamate receptor ionotropic, NMDA 2C OS=Rattus norvegicus
GN=Grin2c PE=1 SV=1
Length = 1237
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 19 KLMAFIWDSSRLDFEAAQD--CELVT--AGELFGRSGYAIGLQKGSPWADAVTLAILDF 73
KL AFI+D++ L++ A +D C+LVT +G++F +GY I +QK S W A+ LA+L
Sbjct: 722 KLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIAMQKDSHWKRAIDLALLQL 780
>sp|Q8TCU5|NMD3A_HUMAN Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A
PE=1 SV=2
Length = 1115
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 2 RFDVKFSPSTV--VRHGTKKLMAFIWDSSRLDFEAA--QDCELVTAGELFGRSGYAIGLQ 57
R++V +P V +++ +KL AFI D + LD+E + DC+L+T G+ F GY IGL
Sbjct: 819 RYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLP 878
Query: 58 KGSPWADAVTLAILDF 73
SP ++ I +
Sbjct: 879 PNSPLTANISELISQY 894
>sp|Q9ULK0|GRID1_HUMAN Glutamate receptor ionotropic, delta-1 OS=Homo sapiens GN=GRID1
PE=2 SV=2
Length = 1009
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 8 SPSTVVRHGTKKLMAFIWDSSRLDFEAA--QDCELVTAGELFGRSGYAIGLQKGSPWADA 65
SPS +R K AF+WD + +++ A DC + G GY I LQ GSP+ D
Sbjct: 724 SPSEGIRKAKKGNYAFLWDVAVVEYAALTDDDCSVTVIGNSISSKGYGIALQHGSPYRDL 783
Query: 66 VTLAILDFHES 76
+ IL+ ++
Sbjct: 784 FSQRILELQDT 794
>sp|Q38PU2|GRIK3_MACFA Glutamate receptor ionotropic, kainate 3 OS=Macaca fascicularis
GN=GRIK3 PE=2 SV=1
Length = 919
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 9 PSTVVRHGTKKLM-------AFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSP 61
PS +V++ + + A + +S+ +++ ++C L G L GY IG GSP
Sbjct: 715 PSALVKNNEEGIQRALTADYALLMESTTIEYVTQRNCNLTQIGGLIDSKGYGIGTPMGSP 774
Query: 62 WADAVTLAILDFHESTVCYLFMAK 85
+ D +T+AIL E ++ K
Sbjct: 775 YRDKITIAILQLQEEDKLHIMKEK 798
>sp|Q13003|GRIK3_HUMAN Glutamate receptor ionotropic, kainate 3 OS=Homo sapiens GN=GRIK3
PE=2 SV=3
Length = 919
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 9 PSTVVRHGTKKLM-------AFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSP 61
PS +V++ + + A + +S+ +++ ++C L G L GY IG GSP
Sbjct: 715 PSALVKNNEEGIQRALTADYALLMESTTIEYVTQRNCNLTQIGGLIDSKGYGIGTPMGSP 774
Query: 62 WADAVTLAILDFHESTVCYLFMAK 85
+ D +T+AIL E ++ K
Sbjct: 775 YRDKITIAILQLQEEDKLHIMKEK 798
>sp|Q61627|GRID1_MOUSE Glutamate receptor ionotropic, delta-1 OS=Mus musculus GN=Grid1
PE=1 SV=2
Length = 1009
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 8 SPSTVVRHGTKKLMAFIWDSSRLDFEAA--QDCELVTAGELFGRSGYAIGLQKGSPWADA 65
+PS +R K AF+WD + +++ A DC + G GY I LQ GSP+ D
Sbjct: 724 NPSEGIRKAKKGNYAFLWDVAVVEYAALTDDDCSVTVIGNSISSKGYGIALQHGSPYRDL 783
Query: 66 VTLAILDFHES 76
+ IL+ ++
Sbjct: 784 FSQRILELQDT 794
>sp|Q62640|GRID1_RAT Glutamate receptor ionotropic, delta-1 OS=Rattus norvegicus
GN=Grid1 PE=2 SV=1
Length = 1009
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 8 SPSTVVRHGTKKLMAFIWDSSRLDFEAA--QDCELVTAGELFGRSGYAIGLQKGSPWADA 65
+PS +R K AF+WD + +++ A DC + G GY I LQ GSP+ D
Sbjct: 724 NPSEGIRKAKKGNYAFLWDVAVVEYAALTDDDCSVTVIGNSISSKGYGIALQHGSPYRDL 783
Query: 66 VTLAILDFHES 76
+ IL+ ++
Sbjct: 784 FSQRILELQDT 794
>sp|Q90218|GLRK_ANAPL Probable glutamate receptor OS=Anas platyrhynchos GN=KBP PE=2 SV=1
Length = 487
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 22 AFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHES 76
AFI +S D AA+ C L+ A E+ G G+ I + SPW +++A+L ES
Sbjct: 335 AFIGESISQDLAAARHCNLIRAPEVIGARGFGIATAQASPWTKKLSIAVLKLRES 389
>sp|B1AS29|GRIK3_MOUSE Glutamate receptor ionotropic, kainate 3 OS=Mus musculus GN=Grik3
PE=2 SV=1
Length = 919
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 9 PSTVVRHGTKKLM-------AFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSP 61
PS +V++ + + A + +S+ +++ ++C L G L GY IG GSP
Sbjct: 715 PSALVKNNEEGIQRTLTADYALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSP 774
Query: 62 WADAVTLAILDFHESTVCYLFMAK 85
+ D +T+AIL E ++ K
Sbjct: 775 YRDKITIAILQLQEEDKLHIMKEK 798
>sp|Q63226|GRID2_RAT Glutamate receptor ionotropic, delta-2 OS=Rattus norvegicus
GN=Grid2 PE=1 SV=2
Length = 1007
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 22 AFIWDSSRLDFEAAQD--CELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHES 76
AF+WD++ L++ A D C T G GY I LQ GSP+ D + IL+ +S
Sbjct: 738 AFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQS 794
>sp|Q61625|GRID2_MOUSE Glutamate receptor ionotropic, delta-2 OS=Mus musculus GN=Grid2
PE=1 SV=1
Length = 1007
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 22 AFIWDSSRLDFEAAQD--CELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHES 76
AF+WD++ L++ A D C T G GY I LQ GSP+ D + IL+ +S
Sbjct: 738 AFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQS 794
>sp|P42264|GRIK3_RAT Glutamate receptor ionotropic, kainate 3 OS=Rattus norvegicus
GN=Grik3 PE=1 SV=1
Length = 919
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 9 PSTVVRHGTKKLM-------AFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSP 61
PS +V++ + + A + +S+ +++ ++C L G L GY IG GSP
Sbjct: 715 PSALVKNNEEGIQRTLTADYALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSP 774
Query: 62 WADAVTLAILDFHESTVCYLFMAK 85
+ D +T+AIL E ++ K
Sbjct: 775 YRDKITIAILQLQEEDKLHIMKEK 798
>sp|Q63273|GRIK5_RAT Glutamate receptor ionotropic, kainate 5 OS=Rattus norvegicus
GN=Grik5 PE=1 SV=1
Length = 979
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 22 AFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHEST 77
AF+ +S+ ++ +C L G L GY IG+ GSP+ D +TLAIL E+
Sbjct: 718 AFLLESTMNEYHRRLNCNLTQIGGLLDTKGYGIGMPLGSPFRDEITLAILQLQENN 773
>sp|Q61626|GRIK5_MOUSE Glutamate receptor ionotropic, kainate 5 OS=Mus musculus GN=Grik5
PE=2 SV=2
Length = 979
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 22 AFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHEST 77
AF+ +S+ ++ +C L G L GY IG+ GSP+ D +TLAIL E+
Sbjct: 718 AFLLESTMNEYHRRLNCNLTQIGGLLDTKGYGIGMPLGSPFRDEITLAILQLQENN 773
>sp|Q16478|GRIK5_HUMAN Glutamate receptor ionotropic, kainate 5 OS=Homo sapiens GN=GRIK5
PE=2 SV=2
Length = 980
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 22 AFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHEST 77
AF+ +S+ ++ +C L G L GY IG+ GSP+ D +TLAIL E+
Sbjct: 718 AFLLESTMNEYHRRLNCNLTQIGGLLDTKGYGIGMPLGSPFRDEITLAILQLQENN 773
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,314,432
Number of Sequences: 539616
Number of extensions: 941384
Number of successful extensions: 2376
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2285
Number of HSP's gapped (non-prelim): 88
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)