Query psy17442
Match_columns 90
No_of_seqs 150 out of 1030
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 22:34:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pb7_A N-methyl-D-aspartate re 99.8 9.4E-19 3.2E-23 115.6 10.0 86 4-89 202-287 (292)
2 2rc8_A Glutamate [NMDA] recept 99.7 1.2E-17 4.1E-22 110.2 9.3 87 3-89 199-289 (294)
3 1yae_A Glutamate receptor, ion 99.7 3E-17 1E-21 108.8 10.8 85 4-89 204-288 (312)
4 3g3k_A Glutamate receptor, ion 99.7 1.5E-17 5.1E-22 106.9 8.0 84 5-89 171-254 (259)
5 2a5s_A N-methyl-D-aspartate re 99.7 9.6E-17 3.3E-21 105.4 10.4 85 5-89 192-280 (284)
6 4gvo_A LMO2349 protein; struct 99.7 9.3E-18 3.2E-22 107.7 5.2 86 4-89 149-236 (243)
7 4h5g_A Amino acid ABC superfam 99.7 4.6E-17 1.6E-21 104.4 8.0 85 4-88 149-237 (243)
8 2v3u_A Glutamate receptor delt 99.7 4.9E-16 1.7E-20 99.7 9.7 85 4-89 173-259 (265)
9 3kzg_A Arginine 3RD transport 99.7 1.9E-16 6.5E-21 100.4 6.7 86 4-89 136-231 (237)
10 3del_B Arginine binding protei 99.7 5.7E-16 1.9E-20 98.2 8.8 86 4-89 143-233 (242)
11 3i6v_A Periplasmic His/Glu/Gln 99.7 6E-16 2.1E-20 98.4 8.5 86 4-89 130-218 (232)
12 1mqi_A Glutamate receptor 2; G 99.6 2.1E-15 7.2E-20 97.0 10.0 85 4-89 170-257 (263)
13 4f3p_A Glutamine-binding perip 99.6 1.8E-15 6.1E-20 96.7 9.1 86 4-89 156-243 (249)
14 1ii5_A SLR1257 protein; membra 99.6 3.2E-15 1.1E-19 93.8 9.8 86 4-89 140-227 (233)
15 3k4u_A Binding component of AB 99.6 2.5E-15 8.4E-20 95.7 8.6 86 4-89 141-229 (245)
16 3qax_A Probable ABC transporte 99.6 4E-15 1.4E-19 95.3 9.2 86 4-89 164-254 (268)
17 3hv1_A Polar amino acid ABC up 99.6 2.6E-15 9E-20 96.8 7.1 86 4-89 160-249 (268)
18 3kg2_A Glutamate receptor 2; I 99.6 8.3E-15 2.8E-19 107.1 10.3 84 5-88 674-759 (823)
19 4eq9_A ABC transporter substra 99.6 7.7E-15 2.6E-19 92.9 8.6 84 6-89 149-236 (246)
20 3h7m_A Sensor protein; histidi 99.6 7.5E-15 2.6E-19 92.2 8.2 86 4-89 143-231 (234)
21 3tql_A Arginine-binding protei 99.6 6.3E-15 2.2E-19 92.0 7.0 84 4-87 136-227 (227)
22 2y7i_A STM4351; arginine-bindi 99.6 1.4E-14 4.7E-19 90.9 8.3 85 4-88 138-228 (229)
23 1wdn_A GLNBP, glutamine bindin 99.6 1.8E-14 6.2E-19 89.9 8.6 86 4-89 135-223 (226)
24 2pyy_A Ionotropic glutamate re 99.6 2.2E-14 7.4E-19 89.6 8.5 86 4-89 136-223 (228)
25 3kbr_A Cyclohexadienyl dehydra 99.6 1.1E-14 3.8E-19 92.1 7.2 84 4-88 151-237 (239)
26 4i62_A Amino acid ABC transpor 99.5 3.1E-14 1E-18 91.1 8.3 86 4-89 176-265 (269)
27 2yln_A Putative ABC transporte 99.5 3.2E-14 1.1E-18 93.1 8.4 86 4-89 188-278 (283)
28 2vha_A Periplasmic binding tra 99.5 5.4E-14 1.8E-18 91.5 9.1 86 4-89 160-249 (287)
29 2yjp_A Putative ABC transporte 99.5 3.4E-14 1.2E-18 93.2 8.0 85 4-88 190-276 (291)
30 1xt8_A Putative amino-acid tra 99.5 2.7E-14 9.2E-19 93.4 7.5 86 4-89 179-266 (292)
31 1lst_A Lysine, arginine, ornit 99.5 4.3E-14 1.5E-18 89.2 7.3 86 4-89 139-233 (239)
32 2pvu_A ARTJ; basic amino acid 99.5 2E-13 6.8E-18 88.3 9.4 86 4-89 174-263 (272)
33 3mpk_A Virulence sensor protei 99.5 1.3E-13 4.5E-18 89.2 7.0 85 4-89 165-253 (267)
34 4dz1_A DALS D-alanine transpor 99.5 2.8E-13 9.7E-18 87.2 7.8 85 4-89 169-254 (259)
35 2iee_A ORF2, probable ABC tran 99.4 3.7E-13 1.3E-17 87.2 6.5 84 4-88 156-246 (271)
36 2q88_A EHUB, putative ABC tran 99.4 8.6E-13 3E-17 84.2 7.2 86 4-89 151-241 (257)
37 2v25_A Major cell-binding fact 99.3 6.1E-12 2.1E-16 79.9 4.9 81 4-88 178-259 (259)
38 3n5l_A Binding protein compone 98.9 2.2E-09 7.5E-14 71.7 6.6 83 6-88 155-243 (310)
39 3p7i_A PHND, subunit of alkylp 98.9 9.1E-09 3.1E-13 69.2 7.5 83 6-88 164-252 (321)
40 2f5x_A BUGD; periplasmic bindi 98.2 1.6E-05 5.6E-10 53.3 9.3 84 4-88 170-277 (312)
41 2qpq_A Protein BUG27; alpha/be 98.2 1.6E-05 5.3E-10 53.1 9.0 84 4-88 161-268 (301)
42 2ozz_A Hypothetical protein YH 98.1 2.1E-06 7.3E-11 55.6 4.0 61 6-70 142-210 (231)
43 2dvz_A BUGE, putative exported 98.1 3.3E-05 1.1E-09 51.8 9.0 85 4-88 174-281 (314)
44 2x26_A Periplasmic aliphatic s 97.0 0.0021 7.3E-08 41.7 6.6 83 5-88 138-232 (308)
45 3un6_A Hypothetical protein sa 96.9 0.0027 9.2E-08 42.1 6.2 82 7-88 190-283 (341)
46 3ix1_A N-formyl-4-amino-5-amin 95.2 0.038 1.3E-06 35.7 5.1 57 5-61 41-97 (302)
47 3ksx_A Nitrate transport prote 95.0 0.1 3.5E-06 34.1 6.8 58 5-62 65-123 (324)
48 1zbm_A Hypothetical protein AF 95.0 0.06 2.1E-06 34.4 5.5 68 6-76 131-210 (280)
49 3lr1_A Tungstate ABC transport 94.9 0.12 4.2E-06 33.3 6.7 82 3-86 38-135 (236)
50 3ksx_A Nitrate transport prote 94.8 0.064 2.2E-06 35.1 5.4 53 7-59 166-219 (324)
51 3muq_A Uncharacterized conserv 94.6 0.16 5.3E-06 32.8 6.8 83 3-86 38-135 (237)
52 3un6_A Hypothetical protein sa 94.6 0.13 4.3E-06 34.0 6.4 56 5-61 89-144 (341)
53 3qsl_A Putative exported prote 94.6 0.18 6.1E-06 32.7 7.0 56 5-60 71-126 (346)
54 3uif_A Sulfonate ABC transport 94.5 0.11 3.7E-06 34.4 6.0 55 8-62 57-111 (348)
55 1h45_A Lactoferrin; metal tran 94.1 0.14 4.7E-06 34.7 5.9 58 4-62 39-105 (334)
56 3qsl_A Putative exported prote 93.9 0.13 4.3E-06 33.5 5.3 33 5-37 173-205 (346)
57 4esw_A Pyrimidine biosynthesis 93.9 0.15 5.2E-06 33.7 5.7 57 5-61 45-101 (342)
58 1ryo_A Serotransferrin; iron t 93.5 0.19 6.3E-06 34.0 5.6 58 4-62 41-107 (327)
59 1iej_A Ovotransferrin; iron, m 93.0 0.22 7.6E-06 33.7 5.4 58 4-62 38-104 (332)
60 2x26_A Periplasmic aliphatic s 92.9 0.44 1.5E-05 30.6 6.5 58 5-62 39-97 (308)
61 3uif_A Sulfonate ABC transport 92.8 0.19 6.3E-06 33.3 4.8 65 7-72 154-227 (348)
62 2x7q_A Ca3427, possible thiami 92.5 0.41 1.4E-05 31.3 6.1 72 5-77 152-237 (321)
63 2de3_A Dibenzothiophene desulf 92.3 0.76 2.6E-05 30.9 7.3 75 11-87 210-298 (365)
64 4edp_A ABC transporter, substr 92.2 1.5 5.1E-05 28.3 10.2 79 6-84 217-297 (351)
65 2g29_A Nitrate transport prote 91.9 0.46 1.6E-05 32.5 6.0 69 7-75 192-272 (417)
66 1blf_A Lactoferrin; transferri 91.8 0.39 1.3E-05 35.5 5.7 58 5-62 39-104 (689)
67 2xxp_A CPS2A; replication, pep 91.7 0.16 5.6E-06 35.1 3.5 31 4-34 67-97 (398)
68 1cb6_A Protein (lactoferrin); 91.6 0.42 1.4E-05 35.4 5.8 58 5-62 39-104 (691)
69 2d3i_A Ovotransferrin; aluminu 91.4 0.51 1.7E-05 35.0 6.0 58 5-62 39-104 (686)
70 3v83_A Serotransferrin; iron b 91.0 0.52 1.8E-05 35.0 5.7 58 5-62 61-126 (698)
71 2x7q_A Ca3427, possible thiami 90.9 1.1 3.9E-05 29.1 6.9 57 6-62 52-112 (321)
72 3up9_A Putative uncharacterize 90.8 0.82 2.8E-05 29.7 6.0 51 4-55 41-93 (245)
73 3l6g_A Betaine ABC transporter 90.6 0.33 1.1E-05 31.2 4.0 55 7-61 38-95 (256)
74 3skp_A Serotransferrin; iron b 90.4 0.6 2.1E-05 31.8 5.2 55 5-61 34-100 (342)
75 3tmg_A Glycine betaine, L-prol 90.2 0.37 1.3E-05 31.4 4.0 56 7-62 52-110 (280)
76 2ozz_A Hypothetical protein YH 89.8 2.1 7.2E-05 27.4 7.2 53 7-60 53-108 (231)
77 3r26_A Molybdate-binding perip 89.5 2.6 8.8E-05 26.3 9.7 77 6-88 154-234 (237)
78 4i1d_A ABC transporter substra 89.5 2.4 8.2E-05 27.2 7.5 69 7-75 186-254 (324)
79 3gxa_A Outer membrane lipoprot 89.3 0.59 2E-05 30.9 4.4 53 4-57 57-111 (275)
80 1blf_A Lactoferrin; transferri 89.3 0.95 3.2E-05 33.5 5.9 36 5-42 374-409 (689)
81 3v83_A Serotransferrin; iron b 89.2 1 3.4E-05 33.5 6.0 53 5-59 390-454 (698)
82 3rpw_A ABC transporter; struct 88.7 3.4 0.00012 27.0 7.9 69 7-75 221-289 (365)
83 3gzg_A Molybdate-binding perip 88.3 3 0.0001 26.6 7.2 78 5-88 169-250 (253)
84 1cb6_A Protein (lactoferrin); 88.2 1 3.5E-05 33.4 5.4 36 5-42 374-409 (691)
85 4euo_A ABC transporter, substr 88.1 3.7 0.00013 26.4 8.9 76 6-82 180-255 (320)
86 2b4l_A Glycine betaine-binding 86.8 0.94 3.2E-05 29.4 4.2 53 8-60 202-257 (268)
87 4ib2_A Putative lipoprotein; p 86.1 1.4 4.7E-05 28.7 4.7 42 4-45 44-87 (252)
88 2d3i_A Ovotransferrin; aluminu 86.0 1.6 5.4E-05 32.4 5.4 36 5-42 374-409 (686)
89 3ir1_A Outer membrane lipoprot 86.0 1.3 4.3E-05 28.8 4.4 52 4-56 35-88 (245)
90 3p7i_A PHND, subunit of alkylp 86.0 2.8 9.6E-05 27.7 6.3 57 5-63 53-115 (321)
91 3mc2_A Inhibitor of carbonic a 85.9 0.73 2.5E-05 34.2 3.6 57 5-62 48-113 (687)
92 3k2d_A ABC-type metal ION tran 85.2 1.1 3.9E-05 28.9 3.9 51 4-55 40-92 (237)
93 3n5l_A Binding protein compone 84.8 2.8 9.7E-05 27.4 5.8 58 5-63 43-105 (310)
94 1us5_A Putative GLUR0 ligand b 84.7 4.5 0.00015 25.8 6.7 24 4-27 165-188 (314)
95 1ryo_A Serotransferrin; iron t 84.3 4.3 0.00015 27.3 6.6 70 5-74 185-271 (327)
96 3tqw_A Methionine-binding prot 84.0 1.4 4.8E-05 28.5 3.9 42 4-45 37-80 (240)
97 4ddd_A Immunogenic protein; ss 83.9 4.8 0.00017 26.5 6.7 57 6-63 74-139 (327)
98 4eqb_A Spermidine/putrescine A 83.9 6.6 0.00023 25.3 7.3 74 9-82 192-267 (330)
99 3tod_A Lactotransferrin; C-LOB 82.7 1.5 5.2E-05 29.7 3.8 26 5-30 33-58 (335)
100 4ef1_A Pheromone COB1/lipoprot 82.2 2 6.8E-05 27.9 4.1 42 4-45 37-80 (246)
101 1xs5_A 29 kDa protein, membran 82.2 2.8 9.5E-05 26.8 4.8 41 4-44 36-78 (241)
102 3kn3_A Putative periplasmic pr 82.1 0.83 2.8E-05 29.5 2.3 57 3-61 38-95 (242)
103 3hn0_A Nitrate transport prote 81.7 2 6.8E-05 27.7 4.0 31 7-37 131-161 (283)
104 1us5_A Putative GLUR0 ligand b 81.5 7.7 0.00026 24.7 6.8 57 5-62 57-123 (314)
105 2rin_A Putative glycine betain 81.0 3.2 0.00011 27.1 4.9 53 7-59 43-99 (298)
106 4ecf_A ABC-type phosphate tran 78.9 1.1 3.8E-05 28.7 2.1 58 3-62 36-93 (264)
107 1sw5_A Osmoprotection protein 78.8 2.8 9.4E-05 26.9 4.0 56 5-60 42-119 (275)
108 3mc2_A Inhibitor of carbonic a 78.7 3.2 0.00011 30.8 4.7 36 5-42 371-406 (687)
109 3k6v_A Solute-binding protein 78.6 13 0.00043 25.1 9.1 82 6-88 227-331 (354)
110 3oxn_A Putative transcriptiona 78.1 3.5 0.00012 24.9 4.2 51 5-63 54-104 (241)
111 2y7p_A LYSR-type regulatory pr 77.7 3.8 0.00013 24.6 4.3 51 5-63 43-93 (218)
112 3cvg_A Putative metal binding 76.8 5.3 0.00018 25.7 4.9 58 3-61 58-116 (294)
113 1r9l_A Glycine betaine-binding 76.6 3 0.0001 27.4 3.8 54 6-59 44-101 (309)
114 3gzg_A Molybdate-binding perip 76.6 3.1 0.00011 26.5 3.7 58 3-61 54-114 (253)
115 3cfz_A UPF0100 protein MJ1186; 76.2 12 0.00042 23.8 6.6 66 6-74 186-278 (292)
116 3ho7_A OXYR; beta-alpha-barrel 76.0 9.8 0.00033 22.5 6.2 72 3-74 140-211 (232)
117 4got_A Methionine-binding lipo 75.7 9.2 0.00032 24.8 5.8 73 4-79 39-130 (249)
118 2h9b_A HTH-type transcriptiona 74.7 5.7 0.0002 25.2 4.7 50 6-63 126-175 (312)
119 3r26_A Molybdate-binding perip 74.4 4.1 0.00014 25.4 3.8 57 3-60 38-97 (237)
120 4ab5_A Transcriptional regulat 73.1 12 0.00039 21.9 7.7 70 3-74 135-206 (222)
121 1zbm_A Hypothetical protein AF 71.9 2.7 9.2E-05 26.5 2.5 22 5-26 44-65 (280)
122 3mpk_A Virulence sensor protei 71.6 6.2 0.00021 24.5 4.2 20 5-24 78-97 (267)
123 1tks_A 3,4-dihydroxy-2-butanon 70.7 3.3 0.00011 26.2 2.7 26 1-26 1-26 (204)
124 2qmx_A Prephenate dehydratase; 70.6 14 0.00047 24.4 5.7 55 4-60 31-94 (283)
125 3rqt_A Putative uncharacterize 69.5 21 0.00073 24.6 6.8 70 5-75 203-273 (486)
126 4ddd_A Immunogenic protein; ss 68.8 3.3 0.00011 27.3 2.6 24 4-27 180-203 (327)
127 2ql3_A Probable transcriptiona 68.8 4.4 0.00015 23.7 2.9 23 5-27 40-62 (209)
128 3kos_A HTH-type transcriptiona 68.5 15 0.00052 21.5 7.4 70 3-73 134-203 (219)
129 2h98_A HTH-type transcriptiona 68.0 8.5 0.00029 24.6 4.3 50 6-63 126-175 (313)
130 3hn0_A Nitrate transport prote 67.5 13 0.00043 23.8 5.1 40 4-43 39-78 (283)
131 3pu5_A Extracellular solute-bi 67.2 22 0.00074 22.7 8.1 73 6-80 193-268 (333)
132 3oxn_A Putative transcriptiona 67.0 18 0.0006 21.6 6.7 57 3-61 145-203 (241)
133 2i49_A Bicarbonate transporter 67.0 9.7 0.00033 26.2 4.7 79 7-85 200-293 (429)
134 1p99_A Hypothetical protein PG 66.6 8.2 0.00028 25.3 4.1 41 4-44 71-114 (295)
135 3onm_A Transcriptional regulat 66.3 3.8 0.00013 24.8 2.3 25 4-28 61-85 (238)
136 3r6u_A Choline-binding protein 66.3 22 0.00076 23.1 6.1 55 5-59 49-124 (284)
137 1ixh_A Phosphate-binding prote 65.6 8.7 0.0003 25.1 4.1 57 3-62 33-89 (321)
138 3mwb_A Prephenate dehydratase; 65.6 13 0.00046 24.8 5.0 57 5-61 37-101 (313)
139 3cij_A UPF0100 protein AF_0094 65.1 24 0.00081 22.4 9.4 78 6-87 188-291 (295)
140 3cfx_A UPF0100 protein MA_0280 64.9 24 0.00082 22.4 8.3 78 6-87 189-292 (296)
141 3jv9_A OXYR, transcriptional r 63.6 19 0.00065 20.8 5.3 69 3-74 137-207 (219)
142 4gl0_A LMO0810 protein; struct 63.5 27 0.00091 22.5 8.6 68 9-76 195-264 (333)
143 1twy_A ABC transporter, peripl 63.1 16 0.00055 22.4 4.8 55 5-63 62-116 (290)
144 2xwv_A Sialic acid-binding per 63.1 20 0.00067 23.5 5.4 52 7-59 169-221 (312)
145 2hxw_A Major antigenic peptide 62.9 16 0.00056 22.0 4.8 76 6-87 150-228 (237)
146 4exl_A PBP 1, phosphate-bindin 62.1 5.3 0.00018 25.5 2.5 57 3-62 36-93 (265)
147 1ixc_A CBNR, LYSR-type regulat 60.8 8.5 0.00029 23.9 3.2 23 6-28 127-149 (294)
148 2hzl_A Trap-T family sorbitol/ 59.9 9.9 0.00034 25.3 3.6 53 7-59 197-252 (365)
149 4ef1_A Pheromone COB1/lipoprot 59.6 18 0.00061 23.4 4.6 72 8-84 158-234 (246)
150 3hhf_B Transcriptional regulat 59.2 23 0.00079 20.4 7.3 68 3-71 132-201 (213)
151 2pfz_A Putative exported prote 57.9 21 0.00072 23.0 4.8 51 7-59 163-215 (301)
152 2qmw_A PDT, prephenate dehydra 57.6 21 0.00071 23.3 4.7 55 4-60 33-96 (267)
153 2vpn_A Periplasmic substrate b 55.5 21 0.00073 23.2 4.6 51 7-59 166-218 (316)
154 3luy_A Probable chorismate mut 52.5 37 0.0013 22.9 5.4 55 5-61 43-106 (329)
155 1pc3_A Phosphate-binding prote 52.0 30 0.001 23.0 4.9 56 3-60 59-114 (350)
156 3szp_A Transcriptional regulat 52.0 38 0.0013 20.6 6.6 70 3-74 215-286 (291)
157 2zzv_A ABC transporter, solute 51.3 7.6 0.00026 25.9 1.9 24 7-30 199-222 (361)
158 2esn_A Probable transcriptiona 50.8 42 0.0015 20.8 6.6 68 3-72 231-300 (310)
159 2qsx_A Putative transcriptiona 50.6 37 0.0013 20.1 6.8 70 3-74 140-211 (218)
160 3o66_A Glycine betaine/carniti 50.6 39 0.0013 21.9 5.2 55 5-59 48-123 (282)
161 2v84_A Spermidine/putrescine A 50.4 48 0.0016 21.3 6.0 69 8-76 209-282 (343)
162 3mz1_A Putative transcriptiona 49.8 42 0.0014 20.5 7.0 67 3-71 217-285 (300)
163 3tpa_A Heme-binding protein A; 48.9 11 0.00037 26.4 2.4 54 5-59 226-279 (521)
164 1h45_A Lactoferrin; metal tran 48.8 58 0.002 21.8 6.0 68 7-74 192-276 (334)
165 4dxb_A RG13, maltose-binding p 48.4 73 0.0025 22.9 9.4 76 7-82 209-292 (637)
166 3c9h_A ABC transporter, substr 47.4 55 0.0019 21.2 9.3 70 6-75 214-286 (355)
167 1uqw_A Putative binding protei 45.6 14 0.00048 25.7 2.6 54 5-59 220-273 (509)
168 3fxq_A LYSR type regulator of 44.5 37 0.0012 21.2 4.3 69 3-73 221-291 (305)
169 2g29_A Nitrate transport prote 43.3 36 0.0012 23.0 4.3 55 5-60 70-134 (417)
170 2noo_A NIKA, nickel-binding pe 42.7 80 0.0028 21.7 6.3 20 5-24 199-218 (502)
171 3t66_A Nickel ABC transporter 42.6 81 0.0028 21.8 6.3 54 5-59 196-249 (496)
172 1pot_A POTD, spermidine/putres 42.4 63 0.0022 20.4 7.5 67 10-76 190-258 (325)
173 2czl_A Hypothetical protein TT 41.8 18 0.00062 22.5 2.5 25 7-31 125-150 (272)
174 3mio_A DHBP synthase, 3,4-dihy 41.7 21 0.00071 22.5 2.7 24 3-26 2-25 (206)
175 1xs5_A 29 kDa protein, membran 41.6 64 0.0022 20.3 6.8 75 9-86 156-232 (241)
176 1atg_A MODA, periplasmic molyb 41.3 52 0.0018 19.2 8.0 81 5-86 143-225 (231)
177 3hz7_A Uncharacterized protein 41.0 41 0.0014 17.8 3.8 51 9-61 19-75 (87)
178 1k4i_A 3,4-dihydroxy-2-butanon 40.8 22 0.00077 22.9 2.8 24 3-26 10-33 (233)
179 3fzv_A Probable transcriptiona 40.6 49 0.0017 20.4 4.4 70 3-73 223-294 (306)
180 1i6a_A OXYR, hydrogen peroxide 39.0 56 0.0019 19.0 4.3 69 3-73 133-203 (219)
181 3hhg_A Transcriptional regulat 39.0 67 0.0023 19.8 7.2 67 3-71 218-287 (306)
182 3ttm_A Polyamine transport pro 38.7 75 0.0026 20.2 8.0 73 10-82 205-285 (346)
183 1zu0_A Chitin oligosaccharide 38.2 31 0.001 24.1 3.4 20 5-24 200-219 (529)
184 4gd5_A Phosphate ABC transport 38.2 28 0.00095 22.0 3.0 56 3-62 69-124 (279)
185 2hpg_A ABC transporter, peripl 38.1 21 0.00072 23.5 2.4 51 7-59 184-236 (327)
186 3cni_A Putative ABC type-2 tra 37.8 16 0.00055 21.2 1.7 23 6-28 42-64 (156)
187 2lnb_A Z-DNA-binding protein 1 37.5 22 0.00074 19.1 1.9 17 63-79 48-64 (80)
188 3u65_B TP33 protein; tetratric 37.0 35 0.0012 22.5 3.3 64 8-73 184-255 (328)
189 3iot_A Maltose-binding protein 37.0 94 0.0032 20.9 8.7 69 7-75 209-286 (449)
190 3cg1_A UPF0100 protein PF0080; 35.2 83 0.0028 19.7 8.0 80 6-86 188-291 (296)
191 2wul_A Glutaredoxin related pr 34.2 37 0.0013 19.2 2.8 20 69-88 92-111 (118)
192 2xw6_A MGS, methylglyoxal synt 33.9 32 0.0011 20.1 2.5 22 7-28 62-83 (134)
193 3ob4_A Conglutin, maltose ABC 33.7 1.2E+02 0.004 21.0 9.1 65 7-71 209-281 (500)
194 2pfy_A Putative exported prote 33.6 22 0.00076 22.9 1.9 51 7-59 164-216 (301)
195 1lq7_A Alpha3W; three helix bu 33.6 36 0.0012 16.8 2.3 20 67-86 15-34 (67)
196 1al3_A Cys regulon transcripti 33.4 91 0.0031 19.6 5.8 70 3-75 222-293 (324)
197 3ttn_A Polyamine transport pro 33.2 92 0.0032 19.7 9.0 68 9-76 200-275 (340)
198 2lpm_A Two-component response 33.1 35 0.0012 19.2 2.6 24 5-28 39-62 (123)
199 2wem_A Glutaredoxin-related pr 32.7 27 0.00092 19.5 2.0 20 69-88 92-111 (118)
200 3exa_A TRNA delta(2)-isopenten 32.4 31 0.0011 23.2 2.5 33 52-84 193-226 (322)
201 3py7_A Maltose-binding peripla 32.2 1.3E+02 0.0043 20.9 9.0 65 7-71 210-282 (523)
202 3eph_A TRNA isopentenyltransfe 32.2 41 0.0014 23.4 3.2 33 52-84 190-223 (409)
203 1uth_A LYSR-type regulatory pr 32.2 94 0.0032 19.4 5.2 57 3-61 232-290 (315)
204 3f6p_A Transcriptional regulat 32.1 44 0.0015 17.6 2.8 24 5-28 32-55 (120)
205 4gl8_A Oligopeptide ABC transp 31.4 29 0.001 24.1 2.4 25 4-28 243-267 (529)
206 3lvj_C Sulfurtransferase TUSA; 31.4 59 0.002 16.8 3.6 50 9-59 28-81 (82)
207 1b93_A Protein (methylglyoxal 31.2 37 0.0013 20.3 2.5 20 8-27 71-90 (152)
208 3cg4_A Response regulator rece 31.0 51 0.0018 17.7 3.0 24 4-27 36-59 (142)
209 3f5f_A Maltose-binding peripla 30.7 1.5E+02 0.0051 21.3 9.0 65 7-71 209-281 (658)
210 3i42_A Response regulator rece 30.5 40 0.0014 17.8 2.5 24 4-27 32-55 (127)
211 3m8u_A Heme-binding protein A; 30.1 1.3E+02 0.0044 20.9 5.5 54 5-59 221-274 (522)
212 1snn_A DHBP synthase, 3,4-dihy 30.0 29 0.00098 22.3 1.9 22 5-26 1-22 (227)
213 3kht_A Response regulator; PSI 29.6 45 0.0015 18.1 2.6 25 4-28 36-60 (144)
214 2cjr_A Nucleocapsid protein; o 29.6 22 0.00074 20.8 1.2 24 49-72 96-123 (128)
215 2xzm_2 40S ribosomal protein S 29.2 31 0.0011 21.8 2.0 19 17-35 183-201 (208)
216 3foz_A TRNA delta(2)-isopenten 29.0 41 0.0014 22.5 2.7 33 52-84 198-232 (316)
217 3oai_A Maltose-binding peripla 28.9 1.3E+02 0.0046 20.2 8.8 65 7-71 209-281 (507)
218 3eod_A Protein HNR; response r 28.7 49 0.0017 17.5 2.7 24 5-28 37-60 (130)
219 3t6k_A Response regulator rece 28.5 44 0.0015 18.1 2.5 24 4-27 33-56 (136)
220 3h4z_A Maltose-binding peripla 28.5 1.6E+02 0.0054 20.9 9.1 65 7-71 209-281 (568)
221 3gt7_A Sensor protein; structu 28.4 51 0.0017 18.3 2.8 24 4-27 36-59 (154)
222 1vmd_A MGS, methylglyoxal synt 27.8 46 0.0016 20.5 2.5 21 8-28 87-107 (178)
223 3nhm_A Response regulator; pro 27.1 45 0.0015 17.7 2.3 24 4-27 32-55 (133)
224 1r5j_A Putative phosphotransac 27.1 33 0.0011 22.8 1.9 21 6-26 112-132 (337)
225 4e7p_A Response regulator; DNA 27.0 51 0.0017 18.1 2.6 25 4-28 51-75 (150)
226 3grc_A Sensor protein, kinase; 27.0 44 0.0015 18.0 2.3 24 4-27 35-58 (140)
227 3gl9_A Response regulator; bet 26.7 48 0.0016 17.6 2.3 24 4-27 31-54 (122)
228 3crm_A TRNA delta(2)-isopenten 26.7 48 0.0016 22.1 2.7 34 53-86 205-240 (323)
229 2ohw_A YUEI protein; structura 26.5 1E+02 0.0034 17.9 4.1 23 37-59 89-111 (133)
230 1nnf_A Iron-utilization peripl 26.2 1.2E+02 0.0042 18.8 10.2 70 6-75 173-251 (309)
231 3d3q_A TRNA delta(2)-isopenten 25.9 57 0.002 22.0 2.9 33 52-84 199-232 (340)
232 3quf_A Extracellular solute-bi 25.7 1.4E+02 0.0049 19.5 9.1 69 7-75 246-326 (414)
233 3osr_A Maltose-binding peripla 25.7 2E+02 0.0067 21.0 9.0 65 7-71 245-317 (653)
234 1dpe_A Dipeptide-binding prote 25.7 1.3E+02 0.0045 20.7 4.8 54 5-59 219-272 (507)
235 3u5c_I RP19, S14, YS9, 40S rib 25.6 37 0.0013 21.3 1.8 17 12-28 157-173 (200)
236 3fxb_A Trap dicarboxylate tran 25.2 52 0.0018 21.6 2.6 51 7-59 180-232 (326)
237 3m6m_D Sensory/regulatory prot 25.1 55 0.0019 17.9 2.5 23 5-27 44-66 (143)
238 3o9p_A Periplasmic murein pept 24.9 35 0.0012 23.7 1.9 19 5-23 229-247 (519)
239 3lte_A Response regulator; str 24.9 58 0.002 17.2 2.5 25 4-28 35-59 (132)
240 2qxy_A Response regulator; reg 24.8 64 0.0022 17.3 2.7 23 5-27 34-56 (142)
241 4aty_A Terephthalate 1,2-CIS-d 24.3 23 0.0008 23.9 0.8 25 3-27 115-139 (349)
242 2qr3_A Two-component system re 24.2 62 0.0021 17.3 2.5 24 5-28 33-56 (140)
243 3g21_A GAG polyprotein, capsid 24.2 41 0.0014 17.8 1.6 27 60-87 13-39 (77)
244 3hv2_A Response regulator/HD d 24.1 59 0.002 17.9 2.5 25 4-28 43-67 (153)
245 2rjn_A Response regulator rece 23.8 70 0.0024 17.5 2.8 24 4-27 36-59 (154)
246 3kyj_B CHEY6 protein, putative 23.8 59 0.002 17.7 2.4 25 4-28 44-69 (145)
247 3n94_A Fusion protein of malto 23.6 1.7E+02 0.006 19.7 8.8 65 7-71 211-283 (475)
248 3mp6_A MBP, SGF29, maltose-bin 23.5 1.9E+02 0.0064 20.0 9.0 65 7-71 210-282 (522)
249 3ilh_A Two component response 23.2 66 0.0023 17.2 2.5 25 4-28 40-69 (146)
250 3o3u_N Maltose-binding peripla 23.2 1.9E+02 0.0064 19.9 9.0 65 7-71 209-281 (581)
251 2rdm_A Response regulator rece 23.0 80 0.0027 16.5 2.9 23 5-27 35-58 (132)
252 3h3g_A Fusion protein of malto 23.0 1.9E+02 0.0066 20.0 9.0 65 7-71 211-283 (539)
253 1p6q_A CHEY2; chemotaxis, sign 22.7 80 0.0027 16.5 2.8 23 5-27 37-59 (129)
254 1jbe_A Chemotaxis protein CHEY 22.6 81 0.0028 16.5 2.8 23 5-27 35-57 (128)
255 3cnb_A DNA-binding response re 22.4 68 0.0023 17.1 2.5 24 5-28 40-63 (143)
256 3ipz_A Monothiol glutaredoxin- 22.3 54 0.0018 17.7 2.0 16 70-85 90-105 (109)
257 1eoq_A GAG polyprotein capsid 22.1 54 0.0018 18.1 1.9 25 56-80 3-29 (96)
258 3ilx_A First ORF in transposon 22.0 71 0.0024 18.4 2.5 23 6-28 50-72 (143)
259 3bvp_A INT, TP901-1 integrase; 21.9 71 0.0024 17.9 2.5 22 6-27 58-79 (138)
260 2yvq_A Carbamoyl-phosphate syn 21.9 30 0.001 20.0 0.9 18 9-26 86-103 (143)
261 3lua_A Response regulator rece 21.8 50 0.0017 17.8 1.8 24 4-27 34-58 (140)
262 2hxr_A HTH-type transcriptiona 21.7 1.3E+02 0.0044 17.5 7.1 65 3-72 158-224 (238)
263 3a10_A Response regulator; pho 21.6 68 0.0023 16.4 2.3 23 5-27 31-53 (116)
264 1qbj_A Protein (double-strande 21.6 58 0.002 17.0 1.9 18 63-80 41-58 (81)
265 2gib_A Nucleocapsid protein; d 21.3 50 0.0017 18.5 1.6 22 49-70 66-91 (103)
266 2fyi_A HTH-type transcriptiona 21.3 1.3E+02 0.0045 17.5 5.2 70 3-75 143-214 (228)
267 3rqi_A Response regulator prot 21.3 72 0.0025 18.4 2.5 24 4-27 36-59 (184)
268 3oo8_A ABC transporter binding 21.2 1.8E+02 0.0062 19.0 7.6 70 7-76 244-325 (415)
269 3n53_A Response regulator rece 21.1 52 0.0018 17.7 1.8 25 4-28 31-55 (140)
270 1sfu_A 34L protein; protein/Z- 21.0 62 0.0021 17.0 1.9 17 63-79 43-59 (75)
271 3g13_A Putative conjugative tr 20.7 72 0.0025 18.5 2.4 21 6-26 62-82 (169)
272 1vi1_A Fatty acid/phospholipid 20.6 53 0.0018 22.0 2.0 23 7-29 81-103 (345)
273 1u7n_A Fatty acid/phospholipid 20.6 48 0.0016 22.1 1.8 23 7-29 81-103 (336)
274 2q5c_A NTRC family transcripti 20.6 1.5E+02 0.0052 17.9 4.1 32 6-37 129-160 (196)
275 2klx_A Glutaredoxin; thioredox 20.5 76 0.0026 15.9 2.3 17 69-85 71-87 (89)
276 3cz5_A Two-component response 20.4 85 0.0029 17.1 2.6 24 4-27 36-59 (153)
277 3mq9_A Bone marrow stromal ant 20.4 2.1E+02 0.0072 19.5 9.0 65 7-71 223-295 (471)
278 3hdg_A Uncharacterized protein 20.3 51 0.0018 17.6 1.6 24 4-27 36-59 (137)
279 2gha_A Maltose ABC transporter 20.2 1.9E+02 0.0063 18.7 9.3 69 7-75 210-288 (382)
280 4h1x_A PBP 2, phosphate-bindin 20.2 1.5E+02 0.0051 18.9 4.0 54 4-62 189-242 (265)
No 1
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.79 E-value=9.4e-19 Score=115.59 Aligned_cols=86 Identities=42% Similarity=0.676 Sum_probs=81.3
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCChHHHHHHHHHhhhccHHHHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYLFM 83 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~l~ 83 (90)
.+++..+++.+|.+|++||++.|.+.+.++++++|++.+++..+...+|+|+++|+++|++.||.+|.+|+++|++++|.
T Consensus 202 ~~~~~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~ 281 (292)
T 1pb7_A 202 NYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLD 281 (292)
T ss_dssp CBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECSSCSEEEEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHH
T ss_pred cCCCHHHHHHHHHcCCceEEEEcHHHHHHHHhcCCCEEEcCccccCCceEEEEeCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 57889999999999999999999999999998889999998888889999999999999999999999999999999999
Q ss_pred HHhccC
Q psy17442 84 AKVHLN 89 (90)
Q Consensus 84 ~kW~~~ 89 (90)
+||+..
T Consensus 282 ~kw~~~ 287 (292)
T 1pb7_A 282 KTWVRY 287 (292)
T ss_dssp HHHTSS
T ss_pred HhhCCC
Confidence 999964
No 2
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.74 E-value=1.2e-17 Score=110.16 Aligned_cols=87 Identities=31% Similarity=0.493 Sum_probs=80.4
Q ss_pred cccCChHHHHHHhhc--CCceEEEeehhHHhHHHhc--CCCeEEeCCcccccceEEEEeCCCCChHHHHHHHHHhhhccH
Q psy17442 3 FDVKFSPSTVVRHGT--KKLMAFIWDSSRLDFEAAQ--DCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTV 78 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~--G~ida~i~d~~~~~~~~~~--~~~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~ 78 (90)
+.+++..+++.+|.+ |++||++.+.+.+.+++++ .|++.+++..+...+|+|+++|+++|++.||++|.+|+++|+
T Consensus 199 ~~~~~~~~~~~~l~~~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~ 278 (294)
T 2rc8_A 199 YNVPATPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGF 278 (294)
T ss_dssp GCBSSHHHHHHHHHSSSCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTHHHHHHHHHHHHHHTTH
T ss_pred hcCCCHHHHHHHHHhccCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 357899999999999 9999999999999999886 478999988888889999999999999999999999999999
Q ss_pred HHHHHHHhccC
Q psy17442 79 CYLFMAKVHLN 89 (90)
Q Consensus 79 ~~~l~~kW~~~ 89 (90)
+++|.+|||..
T Consensus 279 ~~~l~~kw~~~ 289 (294)
T 2rc8_A 279 MDVLHDKWYKV 289 (294)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHhhcCC
Confidence 99999999964
No 3
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.73 E-value=3e-17 Score=108.82 Aligned_cols=85 Identities=29% Similarity=0.502 Sum_probs=79.8
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCChHHHHHHHHHhhhccHHHHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYLFM 83 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~l~ 83 (90)
.+++..+++.+|.+|+ ||++.+.+++.+++++.|++.+++..+...+++|+++|+++|++.||.+|.+|+++|++++|.
T Consensus 204 ~~~~~~~~~~~l~~G~-Da~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~ 282 (312)
T 1yae_A 204 LVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMK 282 (312)
T ss_dssp CBSSHHHHHHHHHHSS-EEEEEEHHHHHHHHTTCTTEEEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCCHHHHHHHHHcCC-cEEEeccHHHHHHHhcCCCEEEecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 3678999999999999 999999999999998888999998888889999999999999999999999999999999999
Q ss_pred HHhccC
Q psy17442 84 AKVHLN 89 (90)
Q Consensus 84 ~kW~~~ 89 (90)
+|||..
T Consensus 283 ~kw~~~ 288 (312)
T 1yae_A 283 EKWWRG 288 (312)
T ss_dssp HHHHCC
T ss_pred hhhcCC
Confidence 999975
No 4
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.72 E-value=1.5e-17 Score=106.91 Aligned_cols=84 Identities=31% Similarity=0.527 Sum_probs=78.4
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCChHHHHHHHHHhhhccHHHHHHH
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYLFMA 84 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~l~~ 84 (90)
+++..+++.+|.+|+ ||++.+.+++.+++++.|++.+++..+...+++|+++|++||++.||++|.+|+++|++++|.+
T Consensus 171 ~~~~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~ 249 (259)
T 3g3k_A 171 VKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKE 249 (259)
T ss_dssp ESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHHCTTEEEESSCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHH
T ss_pred cCCHHHHHHHHHhCC-eEEEechHHHHHHhcCCceEEEecccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHH
Confidence 578999999999999 9999999999998888889999988888999999999999999999999999999999999999
Q ss_pred HhccC
Q psy17442 85 KVHLN 89 (90)
Q Consensus 85 kW~~~ 89 (90)
|||..
T Consensus 250 kw~~~ 254 (259)
T 3g3k_A 250 KWWRG 254 (259)
T ss_dssp HHHCC
T ss_pred hhcCC
Confidence 99964
No 5
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.71 E-value=9.6e-17 Score=105.38 Aligned_cols=85 Identities=36% Similarity=0.585 Sum_probs=77.5
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcC--CCeEEeC--CcccccceEEEEeCCCCChHHHHHHHHHhhhccHHH
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD--CELVTAG--ELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCY 80 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~--~~l~~~~--~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~ 80 (90)
.++..+++.+|.+|++||++.|.+.+.+++++. |++.+++ ..+...+++|+++|+++|++.||++|.+++++|+++
T Consensus 192 ~~~~~~~l~~l~~G~vDa~i~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~ 271 (284)
T 2a5s_A 192 QRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEME 271 (284)
T ss_dssp CSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHcCCeeEEEEchHHHHHHHhcCCCCCEEEeCCccccccCceEEEecCCCHHHHHHHHHHHHHHhCChHH
Confidence 378999999999999999999999999998873 7888774 567788999999999999999999999999999999
Q ss_pred HHHHHhccC
Q psy17442 81 LFMAKVHLN 89 (90)
Q Consensus 81 ~l~~kW~~~ 89 (90)
+|.+||+..
T Consensus 272 ~i~~kw~~~ 280 (284)
T 2a5s_A 272 ELETLWLTG 280 (284)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHhhhc
Confidence 999999864
No 6
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.71 E-value=9.3e-18 Score=107.67 Aligned_cols=86 Identities=15% Similarity=0.055 Sum_probs=77.1
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhc-CCCeEEeCCcccccceEEEEeCCCC-ChHHHHHHHHHhhhccHHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQ-DCELVTAGELFGRSGYAIGLQKGSP-WADAVTLAILDFHESTVCYL 81 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~-~~~l~~~~~~~~~~~~~ia~~kgs~-l~~~vn~~l~~l~~~G~~~~ 81 (90)
.+++..+++.+|.+|++||++.+..++.++.++ ...+.++++.+...+++++++|+++ |++.||++|.+|+++|++++
T Consensus 149 ~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~~l~~~G~~~~ 228 (243)
T 4gvo_A 149 EGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKK 228 (243)
T ss_dssp CCSGGGSHHHHHHHTSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECTTCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred ccCChHHHHHHHHcCCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHhCcHHHH
Confidence 456788999999999999999999999888876 4567778778888899999999987 99999999999999999999
Q ss_pred HHHHhccC
Q psy17442 82 FMAKVHLN 89 (90)
Q Consensus 82 l~~kW~~~ 89 (90)
|.+|||..
T Consensus 229 i~~kw~g~ 236 (243)
T 4gvo_A 229 LSEKWLGA 236 (243)
T ss_dssp HHHHHHCG
T ss_pred HHHHHCCC
Confidence 99999964
No 7
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.70 E-value=4.6e-17 Score=104.40 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=73.5
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe---CCcccccceEEEEeCCCC-ChHHHHHHHHHhhhccHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA---GELFGRSGYAIGLQKGSP-WADAVTLAILDFHESTVC 79 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~---~~~~~~~~~~ia~~kgs~-l~~~vn~~l~~l~~~G~~ 79 (90)
.+++..+++.+|.+|++|+++.|.+++.+++.++..+... .......+++|+++|+++ |++.||++|.+|+++|++
T Consensus 149 ~~~~~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~~~L~~~~n~aL~~l~~dG~~ 228 (243)
T 4h5g_A 149 SLTNMGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNSDDLKEVVDKVIQKLKDEGTY 228 (243)
T ss_dssp EESCHHHHHHHHHHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSCHHHHHHHHHHHHHHHHHTHH
T ss_pred EeCCHHHHHHHHHcCCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCCHHHHHHHHHHHHHHHHCCHH
Confidence 4688999999999999999999999999888776554432 334456789999999987 999999999999999999
Q ss_pred HHHHHHhcc
Q psy17442 80 YLFMAKVHL 88 (90)
Q Consensus 80 ~~l~~kW~~ 88 (90)
++|.+||+.
T Consensus 229 ~~i~~Kw~~ 237 (243)
T 4h5g_A 229 QSYLEKAAS 237 (243)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 999999975
No 8
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.67 E-value=4.9e-16 Score=99.67 Aligned_cols=85 Identities=29% Similarity=0.520 Sum_probs=75.4
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhc--CCCeEEeCCcccccceEEEEeCCCCChHHHHHHHHHhhhccHHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQ--DCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYL 81 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~--~~~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~ 81 (90)
.+++..+++.+|.+|++ |++.+.+++.+++++ .|.+.+++..+...+++|+++|+++|++.||++|.+|+++|++++
T Consensus 173 ~~~~~~~~~~~l~~G~~-a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~ 251 (265)
T 2v3u_A 173 NVLESQAGIQKVKYGNY-AFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDI 251 (265)
T ss_dssp CBSSHHHHHHHHHHSSC-EEEEEHHHHHHHHHHCTTCCEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHH
T ss_pred ccCCHHHHHHHHHcCCE-EEEEcchHHHHHHhcCCCccEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHH
Confidence 46799999999999999 999999999988875 367888888888889999999999999999999999999999999
Q ss_pred HHHHhccC
Q psy17442 82 FMAKVHLN 89 (90)
Q Consensus 82 l~~kW~~~ 89 (90)
|.+||+..
T Consensus 252 i~~kw~~~ 259 (265)
T 2v3u_A 252 LKHKWWPK 259 (265)
T ss_dssp HHHHHCCC
T ss_pred HHhhcCCC
Confidence 99999975
No 9
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.66 E-value=1.9e-16 Score=100.42 Aligned_cols=86 Identities=9% Similarity=0.087 Sum_probs=77.1
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCC--------CeEEeCCcc-cccceEEEEeCCCC-ChHHHHHHHHHh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDC--------ELVTAGELF-GRSGYAIGLQKGSP-WADAVTLAILDF 73 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~--------~l~~~~~~~-~~~~~~ia~~kgs~-l~~~vn~~l~~l 73 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++.+ .+.+++..+ ...+++++++|+++ +.+.+|++|.+|
T Consensus 136 ~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l 215 (237)
T 3kzg_A 136 FYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPDQFVLIKKINKILLEM 215 (237)
T ss_dssp EESSHHHHHHHHHTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECGGGHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEEEcCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999988754 788887777 78899999999975 999999999999
Q ss_pred hhccHHHHHHHHhccC
Q psy17442 74 HESTVCYLFMAKVHLN 89 (90)
Q Consensus 74 ~~~G~~~~l~~kW~~~ 89 (90)
+++|++++|.+||+..
T Consensus 216 ~~~G~~~~i~~k~~~~ 231 (237)
T 3kzg_A 216 EADGTYLRLYSEYFEG 231 (237)
T ss_dssp HHSSHHHHHHHHHC--
T ss_pred HHCCcHHHHHHHHhCc
Confidence 9999999999999975
No 10
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.66 E-value=5.7e-16 Score=98.22 Aligned_cols=86 Identities=17% Similarity=0.102 Sum_probs=78.2
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccc----eEEEEeCCCC-ChHHHHHHHHHhhhccH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSG----YAIGLQKGSP-WADAVTLAILDFHESTV 78 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~----~~ia~~kgs~-l~~~vn~~l~~l~~~G~ 78 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++.+.+.+++..+...+ ++++++|+++ |++.||++|.+|+++|+
T Consensus 143 ~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~ 222 (242)
T 3del_B 143 SFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGV 222 (242)
T ss_dssp EESSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETTCHHHHHHHHHHHHHHHHTTH
T ss_pred EECCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEEeCCCHHHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999988766888876677777 9999999987 99999999999999999
Q ss_pred HHHHHHHhccC
Q psy17442 79 CYLFMAKVHLN 89 (90)
Q Consensus 79 ~~~l~~kW~~~ 89 (90)
+++|.+||+..
T Consensus 223 ~~~i~~k~~~~ 233 (242)
T 3del_B 223 LAELEQKWGLN 233 (242)
T ss_dssp HHHHHHHTTGG
T ss_pred HHHHHHHHCCC
Confidence 99999999975
No 11
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.65 E-value=6e-16 Score=98.36 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=77.2
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcC-CCeEEeCC-cccccceEEEEeCCCC-ChHHHHHHHHHhhhccHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD-CELVTAGE-LFGRSGYAIGLQKGSP-WADAVTLAILDFHESTVCY 80 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~-~~l~~~~~-~~~~~~~~ia~~kgs~-l~~~vn~~l~~l~~~G~~~ 80 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++. +++.+++. .+...+++++++|+++ |.+.+|++|.+|+++|+++
T Consensus 130 ~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~G~~~ 209 (232)
T 3i6v_A 130 EFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLN 209 (232)
T ss_dssp EESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCHHHHHHHHHHHHHHHHTSHHH
T ss_pred EeCCHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCChHH
Confidence 4678999999999999999999999999998874 67777764 4567889999999986 9999999999999999999
Q ss_pred HHHHHhccC
Q psy17442 81 LFMAKVHLN 89 (90)
Q Consensus 81 ~l~~kW~~~ 89 (90)
+|.+|||..
T Consensus 210 ~i~~k~~~~ 218 (232)
T 3i6v_A 210 TMIKKWFGE 218 (232)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHcCC
Confidence 999999975
No 12
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.64 E-value=2.1e-15 Score=97.00 Aligned_cols=85 Identities=25% Similarity=0.404 Sum_probs=77.2
Q ss_pred ccCChHHHHHHh--hcCCceEEEeehhHHhHHHhcC-CCeEEeCCcccccceEEEEeCCCCChHHHHHHHHHhhhccHHH
Q psy17442 4 DVKFSPSTVVRH--GTKKLMAFIWDSSRLDFEAAQD-CELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCY 80 (90)
Q Consensus 4 ~~~~~~~~~~~l--~~G~ida~i~d~~~~~~~~~~~-~~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~ 80 (90)
.+++..+++.+| .+|+ ||++.+.+++.+++++. +.+.+++..+...+++|+++|+++|++.||++|.+|+++|+++
T Consensus 170 ~~~~~~~~~~~l~~~~g~-da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~ 248 (263)
T 1mqi_A 170 FVRTTAEGVARVRKSKGK-YAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLD 248 (263)
T ss_dssp CBSSHHHHHHHHHHTTTS-EEEEEEHHHHHHHTTSTTCCEEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHH
T ss_pred ecCCHHHHHHHHhhcCCc-EEEEechHHHHHHHhcCCCceEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHH
Confidence 467889999999 9999 99999999998888764 6787888778888999999999999999999999999999999
Q ss_pred HHHHHhccC
Q psy17442 81 LFMAKVHLN 89 (90)
Q Consensus 81 ~l~~kW~~~ 89 (90)
+|.+||+..
T Consensus 249 ~i~~k~~~~ 257 (263)
T 1mqi_A 249 KLKNKWWYD 257 (263)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHcCC
Confidence 999999974
No 13
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.63 E-value=1.8e-15 Score=96.67 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=78.4
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcC--CCeEEeCCcccccceEEEEeCCCCChHHHHHHHHHhhhccHHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD--CELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYL 81 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~--~~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~ 81 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++. ..+.+++..+...+++++++|++++.+.+|++|.+|+++|++++
T Consensus 156 ~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~ 235 (249)
T 4f3p_A 156 QFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELARMKADGRYAK 235 (249)
T ss_dssp EESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTCTHHHHHHHHHHHHHHHTHHHH
T ss_pred EcCCHHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCchHHHHHHHHHHHHHhCCcHHH
Confidence 4678899999999999999999999999998874 45888877788889999999998899999999999999999999
Q ss_pred HHHHhccC
Q psy17442 82 FMAKVHLN 89 (90)
Q Consensus 82 l~~kW~~~ 89 (90)
|.+|||..
T Consensus 236 i~~k~~~~ 243 (249)
T 4f3p_A 236 IYKKWFGS 243 (249)
T ss_dssp HHHHHHSS
T ss_pred HHHHHcCC
Confidence 99999975
No 14
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.63 E-value=3.2e-15 Score=93.82 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=77.2
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcC--CCeEEeCCcccccceEEEEeCCCCChHHHHHHHHHhhhccHHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD--CELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYL 81 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~--~~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~ 81 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++. ..+.+++..+...+++++++|++++.+.+|++|.+|+++|++++
T Consensus 140 ~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~l~~l~~~g~~~~ 219 (233)
T 1ii5_A 140 ETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAE 219 (233)
T ss_dssp EESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETTCTTHHHHHHHHHHHHHTTHHHH
T ss_pred EcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCCchHHHHHHHHHHHHHhCCcHHH
Confidence 4678899999999999999999999999988874 36888877777788999999999999999999999999999999
Q ss_pred HHHHhccC
Q psy17442 82 FMAKVHLN 89 (90)
Q Consensus 82 l~~kW~~~ 89 (90)
|.+||+..
T Consensus 220 i~~k~~~~ 227 (233)
T 1ii5_A 220 FTERWLGP 227 (233)
T ss_dssp HHHHHHC-
T ss_pred HHHHHcCC
Confidence 99999865
No 15
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.62 E-value=2.5e-15 Score=95.69 Aligned_cols=86 Identities=14% Similarity=0.077 Sum_probs=77.8
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcC--CCeEEeCCcccccceEEEEeCCCC-ChHHHHHHHHHhhhccHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD--CELVTAGELFGRSGYAIGLQKGSP-WADAVTLAILDFHESTVCY 80 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~--~~l~~~~~~~~~~~~~ia~~kgs~-l~~~vn~~l~~l~~~G~~~ 80 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++. ..+.+++..+...+++++++|+++ |.+.+|++|.+|+++|+++
T Consensus 141 ~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~ 220 (245)
T 3k4u_A 141 TYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYD 220 (245)
T ss_dssp EESSHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCHHHHHHHHHHHHHHHHHSHHH
T ss_pred EeCCHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCHHHHHHHHHHHHHHHhCcHHH
Confidence 4678999999999999999999999999887763 567777888888899999999987 9999999999999999999
Q ss_pred HHHHHhccC
Q psy17442 81 LFMAKVHLN 89 (90)
Q Consensus 81 ~l~~kW~~~ 89 (90)
+|.+|||..
T Consensus 221 ~i~~k~~~~ 229 (245)
T 3k4u_A 221 ELYERWFVD 229 (245)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHhcCc
Confidence 999999975
No 16
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.61 E-value=4e-15 Score=95.26 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=78.2
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccc----eEEEEeCCCC-ChHHHHHHHHHhhhccH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSG----YAIGLQKGSP-WADAVTLAILDFHESTV 78 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~----~~ia~~kgs~-l~~~vn~~l~~l~~~G~ 78 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++.+.+.+++..+...+ ++++++|+++ +++.+|++|.+++++|+
T Consensus 164 ~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~ 243 (268)
T 3qax_A 164 SFDSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDLKSEGV 243 (268)
T ss_dssp EESCHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTTCHHHHHHHHHHHHHHHHTTH
T ss_pred ecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEEeCCCHHHHHHHHHHHHHHHHCCc
Confidence 467899999999999999999999999999988766877777777777 9999999987 99999999999999999
Q ss_pred HHHHHHHhccC
Q psy17442 79 CYLFMAKVHLN 89 (90)
Q Consensus 79 ~~~l~~kW~~~ 89 (90)
++++.+||+..
T Consensus 244 ~~~i~~k~~~~ 254 (268)
T 3qax_A 244 IQSLTKKWQLS 254 (268)
T ss_dssp HHHHHHHTTCS
T ss_pred HHHHHHHHcCC
Confidence 99999999975
No 17
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.59 E-value=2.6e-15 Score=96.77 Aligned_cols=86 Identities=6% Similarity=0.048 Sum_probs=78.0
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcC---CCeEEeCCcccccceEEEEeCCCC-ChHHHHHHHHHhhhccHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD---CELVTAGELFGRSGYAIGLQKGSP-WADAVTLAILDFHESTVC 79 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~---~~l~~~~~~~~~~~~~ia~~kgs~-l~~~vn~~l~~l~~~G~~ 79 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++. +.+.+++..+...+++++++|+++ +.+.||++|.+|+++|++
T Consensus 160 ~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~ 239 (268)
T 3hv1_A 160 QYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARKVDKTLIKKINQGFETLYKNGEF 239 (268)
T ss_dssp EESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECTTCHHHHHHHHHHHHHHHHHTHH
T ss_pred EeCCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 4678899999999999999999999999998873 568888777888899999999986 999999999999999999
Q ss_pred HHHHHHhccC
Q psy17442 80 YLFMAKVHLN 89 (90)
Q Consensus 80 ~~l~~kW~~~ 89 (90)
++|.+|||..
T Consensus 240 ~~i~~k~~~~ 249 (268)
T 3hv1_A 240 QKISNKWFGE 249 (268)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHhcCC
Confidence 9999999975
No 18
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.59 E-value=8.3e-15 Score=107.08 Aligned_cols=84 Identities=24% Similarity=0.387 Sum_probs=77.1
Q ss_pred cCChHHHHHHhh-cCCceEEEeehhHHhHHHhcC-CCeEEeCCcccccceEEEEeCCCCChHHHHHHHHHhhhccHHHHH
Q psy17442 5 VKFSPSTVVRHG-TKKLMAFIWDSSRLDFEAAQD-CELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYLF 82 (90)
Q Consensus 5 ~~~~~~~~~~l~-~G~ida~i~d~~~~~~~~~~~-~~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~l 82 (90)
+++..+++.+++ ++..+|++.|.+.+.|+..++ |++.++++.+...+|||++||||||++.||.+|++|+++|.++++
T Consensus 674 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~~ 753 (823)
T 3kg2_A 674 VRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKL 753 (823)
T ss_dssp BSSHHHHHHHHHTTTTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTCSSHHHHHHHHHHHHHTTHHHHH
T ss_pred cCCHHHHHHHHhccCCceEEEechHHHHHHHhcCCCceEEccccccccceeEeecCCChHHHHHHHHHHHHHhCCcHHHH
Confidence 468999999997 455699999999998887765 999999999999999999999999999999999999999999999
Q ss_pred HHHhcc
Q psy17442 83 MAKVHL 88 (90)
Q Consensus 83 ~~kW~~ 88 (90)
.++||.
T Consensus 754 ~~~w~~ 759 (823)
T 3kg2_A 754 KNKWWY 759 (823)
T ss_dssp HHHHHT
T ss_pred HHhhCc
Confidence 999985
No 19
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.59 E-value=7.7e-15 Score=92.90 Aligned_cols=84 Identities=11% Similarity=-0.029 Sum_probs=74.4
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHHhcC--CCeEEeCCcccccc-eEEEEeCCCC-ChHHHHHHHHHhhhccHHHH
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD--CELVTAGELFGRSG-YAIGLQKGSP-WADAVTLAILDFHESTVCYL 81 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~--~~l~~~~~~~~~~~-~~ia~~kgs~-l~~~vn~~l~~l~~~G~~~~ 81 (90)
.+..+++.+|.+|++||++.+.+.+.+++++. ..+.++.......+ ++++++|+++ +.+.+|++|.+|+++|++++
T Consensus 149 ~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~ 228 (246)
T 4eq9_A 149 ADFQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQGQDELKSFVDKRIKELYKDGTLEK 228 (246)
T ss_dssp CCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEETTCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHcCCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCcHHH
Confidence 48899999999999999999999999998863 46887776665555 8899999986 99999999999999999999
Q ss_pred HHHHhccC
Q psy17442 82 FMAKVHLN 89 (90)
Q Consensus 82 l~~kW~~~ 89 (90)
|.+|||..
T Consensus 229 i~~k~~~~ 236 (246)
T 4eq9_A 229 LSKQFFGD 236 (246)
T ss_dssp HHHHHHSS
T ss_pred HHHHhcCC
Confidence 99999975
No 20
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.58 E-value=7.5e-15 Score=92.20 Aligned_cols=86 Identities=7% Similarity=-0.041 Sum_probs=77.3
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcC--CCeEEeCCcccccceEEEEeCCCC-ChHHHHHHHHHhhhccHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD--CELVTAGELFGRSGYAIGLQKGSP-WADAVTLAILDFHESTVCY 80 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~--~~l~~~~~~~~~~~~~ia~~kgs~-l~~~vn~~l~~l~~~G~~~ 80 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++. ..+.+++..+...+++++++|+++ +.+.+|++|.+|+++|+++
T Consensus 143 ~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~ 222 (234)
T 3h7m_A 143 LTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQYE 222 (234)
T ss_dssp EESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHHHHHHHTHHH
T ss_pred EeCCHHHHHHHHHcCCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCHHHHHHHHHHHHHHHHcCcHH
Confidence 4678899999999999999999999999988863 467777777778889999999986 9999999999999999999
Q ss_pred HHHHHhccC
Q psy17442 81 LFMAKVHLN 89 (90)
Q Consensus 81 ~l~~kW~~~ 89 (90)
+|.+|||..
T Consensus 223 ~i~~k~~~~ 231 (234)
T 3h7m_A 223 AIRAKWLGV 231 (234)
T ss_dssp HHHHHSTTC
T ss_pred HHHHHhccc
Confidence 999999964
No 21
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.57 E-value=6.3e-15 Score=92.04 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=72.7
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCC--CeEEeCCccccc-----ceEEEEeCCCC-ChHHHHHHHHHhhh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDC--ELVTAGELFGRS-----GYAIGLQKGSP-WADAVTLAILDFHE 75 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~--~l~~~~~~~~~~-----~~~ia~~kgs~-l~~~vn~~l~~l~~ 75 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++.+ .+.+++..+... +++++++|+++ +.+.+|++|.+|++
T Consensus 136 ~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~ 215 (227)
T 3tql_A 136 RYPSEEDALMDLTSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGNQALLLKLNKALAAIKA 215 (227)
T ss_dssp EESSHHHHHHHHTTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTCHHHHHHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCCHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999888743 377765544443 45899999987 99999999999999
Q ss_pred ccHHHHHHHHhc
Q psy17442 76 STVCYLFMAKVH 87 (90)
Q Consensus 76 ~G~~~~l~~kW~ 87 (90)
+|++++|.+|||
T Consensus 216 ~g~~~~i~~k~~ 227 (227)
T 3tql_A 216 NGVYAAIVQKYF 227 (227)
T ss_dssp TSHHHHHHHHHC
T ss_pred CChHHHHHHhhC
Confidence 999999999997
No 22
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.56 E-value=1.4e-14 Score=90.89 Aligned_cols=85 Identities=11% Similarity=0.044 Sum_probs=75.3
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccc-----cceEEEEeCCCC-ChHHHHHHHHHhhhcc
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGR-----SGYAIGLQKGSP-WADAVTLAILDFHEST 77 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~-----~~~~ia~~kgs~-l~~~vn~~l~~l~~~G 77 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++.+++.+++..+.. .+++++++|+++ +.+.+|++|.+|+++|
T Consensus 138 ~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g 217 (229)
T 2y7i_A 138 AYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYGKGLGIAVRKDNDALLQEINAALDKVKASP 217 (229)
T ss_dssp EESCHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCTTEEECSCCBCCTTTSCCCBCCEECTTCHHHHHHHHHHHHHHHTSH
T ss_pred ecCCHHHHHHHHHcCCcCEEEechHHHHHHHHhCCCeEEeccccccccccccceEEEEeCCCHHHHHHHHHHHHHHHhCC
Confidence 4678899999999999999999999999998876578887655432 478999999987 9999999999999999
Q ss_pred HHHHHHHHhcc
Q psy17442 78 VCYLFMAKVHL 88 (90)
Q Consensus 78 ~~~~l~~kW~~ 88 (90)
++++|.+||+.
T Consensus 218 ~~~~i~~k~~~ 228 (229)
T 2y7i_A 218 EYAQMQEKWFT 228 (229)
T ss_dssp HHHHHHHHHHC
T ss_pred hHHHHHHHHcC
Confidence 99999999985
No 23
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.56 E-value=1.8e-14 Score=89.89 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=76.7
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcC--CCeEEeCCcccccceEEEEeCCCC-ChHHHHHHHHHhhhccHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD--CELVTAGELFGRSGYAIGLQKGSP-WADAVTLAILDFHESTVCY 80 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~--~~l~~~~~~~~~~~~~ia~~kgs~-l~~~vn~~l~~l~~~G~~~ 80 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++. ..+.+++..+...+++++++|+++ +.+.+|++|.+|+++|+++
T Consensus 135 ~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~g~~~ 214 (226)
T 1wdn_A 135 QFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYN 214 (226)
T ss_dssp EESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHHHHHHTSHHH
T ss_pred EeCCHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHHHHHHHHHHHHHHHhCChHH
Confidence 3678899999999999999999999999988874 467777666667789999999985 9999999999999999999
Q ss_pred HHHHHhccC
Q psy17442 81 LFMAKVHLN 89 (90)
Q Consensus 81 ~l~~kW~~~ 89 (90)
+|.+||+..
T Consensus 215 ~i~~k~~~~ 223 (226)
T 1wdn_A 215 EIYKKWFGT 223 (226)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHcCC
Confidence 999999975
No 24
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.56 E-value=2.2e-14 Score=89.64 Aligned_cols=86 Identities=23% Similarity=0.290 Sum_probs=76.7
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcC--CCeEEeCCcccccceEEEEeCCCCChHHHHHHHHHhhhccHHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD--CELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYL 81 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~--~~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~ 81 (90)
.+.+..+++.+|.+|++|+++.+.+.+.+++++. +.+.+++..+...+++++++|++++.+.+|.+|.+|+++|++++
T Consensus 136 ~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~g~~~~ 215 (228)
T 2pyy_A 136 EVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGTYQS 215 (228)
T ss_dssp EESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTTHHHHHHHHHHHHHTTHHHH
T ss_pred ecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHHHHHHHHHHHHHHhCCcHHH
Confidence 4678899999999999999999999999888764 46777766666778999999998999999999999999999999
Q ss_pred HHHHhccC
Q psy17442 82 FMAKVHLN 89 (90)
Q Consensus 82 l~~kW~~~ 89 (90)
|.+||+..
T Consensus 216 i~~k~~~~ 223 (228)
T 2pyy_A 216 LYDKWFDP 223 (228)
T ss_dssp HHHHHHCC
T ss_pred HHHHHcCC
Confidence 99999864
No 25
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.55 E-value=1.1e-14 Score=92.09 Aligned_cols=84 Identities=12% Similarity=-0.056 Sum_probs=73.7
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeC--CcccccceEEEEeCCCC-ChHHHHHHHHHhhhccHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAG--ELFGRSGYAIGLQKGSP-WADAVTLAILDFHESTVCY 80 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~--~~~~~~~~~ia~~kgs~-l~~~vn~~l~~l~~~G~~~ 80 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++.+.+.++. ..+...+++++++| ++ +.+.+|++|.+|+++|+++
T Consensus 151 ~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~l~~~ln~~l~~l~~~g~~~ 229 (239)
T 3kbr_A 151 VHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR-DEAFKRYVDQWLHIAEQSGLLR 229 (239)
T ss_dssp ECCCTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECS-CHHHHHHHHHHHHHHHHHTHHH
T ss_pred EeCCHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcC-CHHHHHHHHHHHHHHHHCCcHH
Confidence 46788999999999999999999999999988866676664 34678889999999 65 9999999999999999999
Q ss_pred HHHHHhcc
Q psy17442 81 LFMAKVHL 88 (90)
Q Consensus 81 ~l~~kW~~ 88 (90)
+|.+|||.
T Consensus 230 ~i~~k~~~ 237 (239)
T 3kbr_A 230 QRMEHWLE 237 (239)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhc
Confidence 99999996
No 26
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.54 E-value=3.1e-14 Score=91.15 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=75.3
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCccc---ccceEEEEeCCCC-ChHHHHHHHHHhhhccHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFG---RSGYAIGLQKGSP-WADAVTLAILDFHESTVC 79 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~---~~~~~ia~~kgs~-l~~~vn~~l~~l~~~G~~ 79 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++.+.+.+....+. ..+++++++|++| +.+.+|++|.+++++|++
T Consensus 176 ~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~ 255 (269)
T 4i62_A 176 SLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGEL 255 (269)
T ss_dssp EESCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEESSCHHHHHHHHHHHHHHHHTTHH
T ss_pred ecCCHHHHHHHHHcCCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEeCCCHHHHHHHHHHHHHHHhCChH
Confidence 467889999999999999999999999999888766666644433 6688999999987 999999999999999999
Q ss_pred HHHHHHhccC
Q psy17442 80 YLFMAKVHLN 89 (90)
Q Consensus 80 ~~l~~kW~~~ 89 (90)
+++.+|||..
T Consensus 256 ~~i~~k~~~~ 265 (269)
T 4i62_A 256 DKLIEDAFKA 265 (269)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhCC
Confidence 9999999864
No 27
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.53 E-value=3.2e-14 Score=93.08 Aligned_cols=86 Identities=10% Similarity=-0.021 Sum_probs=76.4
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcC--CCeEEeC-Cccc-ccceEEEEeCCCC-ChHHHHHHHHHhhhccH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD--CELVTAG-ELFG-RSGYAIGLQKGSP-WADAVTLAILDFHESTV 78 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~--~~l~~~~-~~~~-~~~~~ia~~kgs~-l~~~vn~~l~~l~~~G~ 78 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++. ..+.+++ ..+. ..+++|+++|+++ |.+.||++|.+|+++|+
T Consensus 188 ~~~~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~~~~l~~~i~~al~~l~~~g~ 267 (283)
T 2yln_A 188 PVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGT 267 (283)
T ss_dssp ECSSHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESSCHHHHHHHHHHHHHHHHTTH
T ss_pred EeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCCCHHHHHHHHHHHHHHHHCCc
Confidence 3578899999999999999999999999988764 2488887 6677 7889999999986 99999999999999999
Q ss_pred HHHHHHHhccC
Q psy17442 79 CYLFMAKVHLN 89 (90)
Q Consensus 79 ~~~l~~kW~~~ 89 (90)
+++|.+||+..
T Consensus 268 ~~~i~~k~~~~ 278 (283)
T 2yln_A 268 LKKLGEQFFGK 278 (283)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHcCC
Confidence 99999999965
No 28
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.53 E-value=5.4e-14 Score=91.49 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=77.2
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcC---CCeEEeCCcccccceEEEEeCCCC-ChHHHHHHHHHhhhccHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD---CELVTAGELFGRSGYAIGLQKGSP-WADAVTLAILDFHESTVC 79 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~---~~l~~~~~~~~~~~~~ia~~kgs~-l~~~vn~~l~~l~~~G~~ 79 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++. ..+.+++..+...+++++++|+++ +.+.+|++|.+|+++|++
T Consensus 160 ~~~~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~ 239 (287)
T 2vha_A 160 SAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEA 239 (287)
T ss_dssp EESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred EcCCHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCceEEEEeCCCHHHHHHHHHHHHHHHhCchH
Confidence 4678899999999999999999999999988763 367888777778889999999986 999999999999999999
Q ss_pred HHHHHHhccC
Q psy17442 80 YLFMAKVHLN 89 (90)
Q Consensus 80 ~~l~~kW~~~ 89 (90)
+++.+||+..
T Consensus 240 ~~i~~k~~~~ 249 (287)
T 2vha_A 240 EKWFDKWFKN 249 (287)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHcCC
Confidence 9999999864
No 29
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.53 E-value=3.4e-14 Score=93.16 Aligned_cols=85 Identities=18% Similarity=0.075 Sum_probs=77.0
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccce-EEEEeCCCC-ChHHHHHHHHHhhhccHHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGY-AIGLQKGSP-WADAVTLAILDFHESTVCYL 81 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~-~ia~~kgs~-l~~~vn~~l~~l~~~G~~~~ 81 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++.+.+.+++..+...++ +++++|++| +.+.+|++|.+|+++|++++
T Consensus 190 ~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~al~~l~~~g~~~~ 269 (291)
T 2yjp_A 190 KFDQNTETFDALKDGRGVALAHDNALLWAWAKENPNFEVAIGNLGPAEFIAPAVQKGNADLLNWVNGEIAAMKKDGRLKA 269 (291)
T ss_dssp EESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEECCSSSCEEECCEEETTCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred EeCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcCCcccCCcceEEEEeCCCHHHHHHHHHHHHHHHhCChHHH
Confidence 3578899999999999999999999999988876668888777777888 999999987 99999999999999999999
Q ss_pred HHHHhcc
Q psy17442 82 FMAKVHL 88 (90)
Q Consensus 82 l~~kW~~ 88 (90)
|.+||+.
T Consensus 270 i~~k~~~ 276 (291)
T 2yjp_A 270 AYEKTLL 276 (291)
T ss_dssp HHHHHTH
T ss_pred HHHHhcc
Confidence 9999985
No 30
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.53 E-value=2.7e-14 Score=93.36 Aligned_cols=86 Identities=12% Similarity=0.027 Sum_probs=77.1
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccce-EEEEeCCCC-ChHHHHHHHHHhhhccHHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGY-AIGLQKGSP-WADAVTLAILDFHESTVCYL 81 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~-~ia~~kgs~-l~~~vn~~l~~l~~~G~~~~ 81 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++...+.+++..+...++ +++++|+++ +.+.+|++|.+++++|++++
T Consensus 179 ~~~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~ 258 (292)
T 1xt8_A 179 KYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHK 258 (292)
T ss_dssp EESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEEEEEEEEEEECCEEETTCHHHHHHHHHHHHHHHTTTHHHH
T ss_pred EcCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcccccccCceeEEEEeCCCHHHHHHHHHHHHHHHhCcHHHH
Confidence 3578899999999999999999999999998876568777766777788 999999987 99999999999999999999
Q ss_pred HHHHhccC
Q psy17442 82 FMAKVHLN 89 (90)
Q Consensus 82 l~~kW~~~ 89 (90)
|.+||+..
T Consensus 259 i~~k~~~~ 266 (292)
T 1xt8_A 259 AYDETLKA 266 (292)
T ss_dssp HHHHHTGG
T ss_pred HHHHhcCC
Confidence 99999863
No 31
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.51 E-value=4.3e-14 Score=89.24 Aligned_cols=86 Identities=16% Similarity=0.054 Sum_probs=72.8
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhH-HHhc--CCCeEEeCCccccc-----ceEEEEeCCCC-ChHHHHHHHHHhh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDF-EAAQ--DCELVTAGELFGRS-----GYAIGLQKGSP-WADAVTLAILDFH 74 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~-~~~~--~~~l~~~~~~~~~~-----~~~ia~~kgs~-l~~~vn~~l~~l~ 74 (90)
.+++..+++.+|.+|++||++.+.+.+.+ ++.+ ..++.+++..+... +++++++|+++ +.+.+|++|.+|+
T Consensus 139 ~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~l~ 218 (239)
T 1lst_A 139 AYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELR 218 (239)
T ss_dssp EESSHHHHHHHHHTTSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTCHHHHHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEEeCCCHHHHHHHHHHHHHHH
Confidence 46788999999999999999999998864 4544 24577776655433 68999999987 9999999999999
Q ss_pred hccHHHHHHHHhccC
Q psy17442 75 ESTVCYLFMAKVHLN 89 (90)
Q Consensus 75 ~~G~~~~l~~kW~~~ 89 (90)
++|++++|.+||+..
T Consensus 219 ~~G~~~~i~~k~~~~ 233 (239)
T 1lst_A 219 QDGTYDKMAKKYFDF 233 (239)
T ss_dssp HTTHHHHHHHTTCSS
T ss_pred HCccHHHHHHHHcCC
Confidence 999999999999975
No 32
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.49 E-value=2e-13 Score=88.30 Aligned_cols=86 Identities=13% Similarity=0.002 Sum_probs=75.2
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCC--CeEEeCCcc--cccceEEEEeCCCCChHHHHHHHHHhhhccHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDC--ELVTAGELF--GRSGYAIGLQKGSPWADAVTLAILDFHESTVC 79 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~--~l~~~~~~~--~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~ 79 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++.. .+.+++... ...+++++++|+.++.+.+|++|.+++++|++
T Consensus 174 ~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~ 253 (272)
T 2pvu_A 174 KFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVINSGKY 253 (272)
T ss_dssp EESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHH
T ss_pred EcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCCHHHHHHHHHHHHHHHhCChH
Confidence 35788999999999999999999999999887643 477876653 66789999999944999999999999999999
Q ss_pred HHHHHHhccC
Q psy17442 80 YLFMAKVHLN 89 (90)
Q Consensus 80 ~~l~~kW~~~ 89 (90)
++|.+||+..
T Consensus 254 ~~i~~k~~~~ 263 (272)
T 2pvu_A 254 TEIYKKWFGK 263 (272)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHcCC
Confidence 9999999875
No 33
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.46 E-value=1.3e-13 Score=89.18 Aligned_cols=85 Identities=8% Similarity=0.065 Sum_probs=73.3
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhc--CCCeEEeCCcc-cccceEEEEeCCCC-ChHHHHHHHHHhhhccHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQ--DCELVTAGELF-GRSGYAIGLQKGSP-WADAVTLAILDFHESTVC 79 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~--~~~l~~~~~~~-~~~~~~ia~~kgs~-l~~~vn~~l~~l~~~G~~ 79 (90)
.+++..+++.+|.+|++||++.+.+++.+++++ ...+.+++... ...+++++++|+++ +.+.||++|.+|.++| +
T Consensus 165 ~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~~-~ 243 (267)
T 3mpk_A 165 TADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTELMSILNKALYSISNDE-L 243 (267)
T ss_dssp EESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCHHHHHHHHHHHHTSCHHH-H
T ss_pred EeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCHHHHHHHHHHHHhCCHHH-H
Confidence 467899999999999999999999999999887 45677775433 46789999999987 9999999999999996 9
Q ss_pred HHHHHHhccC
Q psy17442 80 YLFMAKVHLN 89 (90)
Q Consensus 80 ~~l~~kW~~~ 89 (90)
++|.+||+..
T Consensus 244 ~~i~~kw~~~ 253 (267)
T 3mpk_A 244 ASIISRWRGS 253 (267)
T ss_dssp HHHHHTTC--
T ss_pred HHHHHhhccC
Confidence 9999999864
No 34
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.45 E-value=2.8e-13 Score=87.16 Aligned_cols=85 Identities=11% Similarity=-0.023 Sum_probs=74.5
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhc-CCCeEEeCCcccccceEEEEeCCCCChHHHHHHHHHhhhccHHHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQ-DCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYLF 82 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~-~~~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~l 82 (90)
.+++..+++.+|.+|++||++.+.+.+.++.++ ...+.+........+++|+++|+++|.+.+|++|.+ ..++.++++
T Consensus 169 ~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ln~~l~~-~g~~~l~~~ 247 (259)
T 4dz1_A 169 LYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSPVRDDFNLWLKE-QGPQKISGI 247 (259)
T ss_dssp EESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHH-HCHHHHHHH
T ss_pred ecCCHHHHHHHHHcCCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeCChHHHHHHHHHHHh-CCCeehHHH
Confidence 467889999999999999999999998888766 456666655566788999999999999999999999 889999999
Q ss_pred HHHhccC
Q psy17442 83 MAKVHLN 89 (90)
Q Consensus 83 ~~kW~~~ 89 (90)
.++|+..
T Consensus 248 ~~~~~~~ 254 (259)
T 4dz1_A 248 VDSWMKH 254 (259)
T ss_dssp HHHHTCC
T ss_pred HHHHHhh
Confidence 9999865
No 35
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.42 E-value=3.7e-13 Score=87.20 Aligned_cols=84 Identities=7% Similarity=-0.022 Sum_probs=71.3
Q ss_pred ccCChHHH--HHHhhcCCceEEEeehhHHhHHHh-cC--CCeEEe-CCcccccceEEEEeCCCC-ChHHHHHHHHHhhhc
Q psy17442 4 DVKFSPST--VVRHGTKKLMAFIWDSSRLDFEAA-QD--CELVTA-GELFGRSGYAIGLQKGSP-WADAVTLAILDFHES 76 (90)
Q Consensus 4 ~~~~~~~~--~~~l~~G~ida~i~d~~~~~~~~~-~~--~~l~~~-~~~~~~~~~~ia~~kgs~-l~~~vn~~l~~l~~~ 76 (90)
.+++..++ +.+|.+|++| ++.+...+.+++. +. ..+.++ +..+...+++++++|+++ |++.||++|.+|+++
T Consensus 156 ~~~~~~~~~l~~~L~~GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~al~~l~~~ 234 (271)
T 2iee_A 156 IYDNATNEQYLKDVANGRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKD 234 (271)
T ss_dssp ECSSCCHHHHHHHHHHTSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEETTCHHHHHHHHHHHHHHHHH
T ss_pred EeCChhhHHHHHHHHcCCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEEEcCCCHHHHHHHHHHHHHHHHC
Confidence 35677888 9999999999 7777777766665 43 357777 666777889999999987 999999999999999
Q ss_pred cHHHHHHHHhcc
Q psy17442 77 TVCYLFMAKVHL 88 (90)
Q Consensus 77 G~~~~l~~kW~~ 88 (90)
|++++|.+||+.
T Consensus 235 G~~~~i~~k~~~ 246 (271)
T 2iee_A 235 GSLTKLSKQFFN 246 (271)
T ss_dssp THHHHHHHHHTT
T ss_pred CCHHHHHHHhCC
Confidence 999999999997
No 36
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.40 E-value=8.6e-13 Score=84.22 Aligned_cols=86 Identities=10% Similarity=0.047 Sum_probs=71.4
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcC--CCeEEeCCccc--ccceEEEEeCCCC-ChHHHHHHHHHhhhccH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD--CELVTAGELFG--RSGYAIGLQKGSP-WADAVTLAILDFHESTV 78 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~--~~l~~~~~~~~--~~~~~ia~~kgs~-l~~~vn~~l~~l~~~G~ 78 (90)
.+++..+++.+|.+|++||++.+.+.+.+++++. ..+..+..... ..+++++++|+++ +.+.+|++|.+|+++|+
T Consensus 151 ~~~~~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~~~~~g~ 230 (257)
T 2q88_A 151 VVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGE 230 (257)
T ss_dssp ECSSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGGGHHHHHHHHHHHHHHHHHTH
T ss_pred EcCCHHHHHHHHHcCCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEcCCCHHHHHHHHHHHHHHHhCCc
Confidence 4678899999999999999999999999988763 24555543221 3567889999975 99999999999999999
Q ss_pred HHHHHHHhccC
Q psy17442 79 CYLFMAKVHLN 89 (90)
Q Consensus 79 ~~~l~~kW~~~ 89 (90)
+++|.+||+..
T Consensus 231 ~~~i~~k~~~~ 241 (257)
T 2q88_A 231 FAKIIEPYGFS 241 (257)
T ss_dssp HHHHHGGGTCC
T ss_pred HHHHHHHhCCC
Confidence 99999999653
No 37
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.25 E-value=6.1e-12 Score=79.86 Aligned_cols=81 Identities=22% Similarity=0.176 Sum_probs=70.4
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCC-ChHHHHHHHHHhhhccHHHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSP-WADAVTLAILDFHESTVCYLF 82 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~-l~~~vn~~l~~l~~~G~~~~l 82 (90)
.+++..+++.+|.+|++|+++.+.+.+.+++++.+. +++..+...+++++++|+++ +.+.+|++|.+++++ ++++
T Consensus 178 ~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~~~~~--~~~i 253 (259)
T 2v25_A 178 EFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSE--ILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEHKNE--IDAL 253 (259)
T ss_dssp EESSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTEE--ECSCCCSEEEECCEEETTCHHHHHHHHHHHHHTHHH--HHHH
T ss_pred EeCCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCCC--ccccccccceeEEEEcCCCHHHHHHHHHHHHHHHHH--HHHH
Confidence 467889999999999999999999998887776543 55556667789999999985 999999999999999 9999
Q ss_pred HHHhcc
Q psy17442 83 MAKVHL 88 (90)
Q Consensus 83 ~~kW~~ 88 (90)
.+||..
T Consensus 254 ~~k~~~ 259 (259)
T 2v25_A 254 AKKWGL 259 (259)
T ss_dssp HHHTTC
T ss_pred HHHhCc
Confidence 999974
No 38
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.93 E-value=2.2e-09 Score=71.69 Aligned_cols=83 Identities=6% Similarity=-0.005 Sum_probs=70.6
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHHhcC----CCeEEeCCcccccceEEEEeCC-CC-ChHHHHHHHHHhhhccHH
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD----CELVTAGELFGRSGYAIGLQKG-SP-WADAVTLAILDFHESTVC 79 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~----~~l~~~~~~~~~~~~~ia~~kg-s~-l~~~vn~~l~~l~~~G~~ 79 (90)
.+.++++.+|.+|++||++.+.+.+..++++. ..+.++........++|++|++ ++ +++.||.+|.++.++|++
T Consensus 155 g~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~ 234 (310)
T 3n5l_A 155 SSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQ 234 (310)
T ss_dssp CCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHH
T ss_pred CCHHHHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhH
Confidence 45678999999999999999999998888764 4677776554556789999999 54 999999999999999999
Q ss_pred HHHHHHhcc
Q psy17442 80 YLFMAKVHL 88 (90)
Q Consensus 80 ~~l~~kW~~ 88 (90)
.++.++|..
T Consensus 235 ~~~l~~~g~ 243 (310)
T 3n5l_A 235 KKVLADLQW 243 (310)
T ss_dssp HHHHHHTTE
T ss_pred HHHHHhcCc
Confidence 999998854
No 39
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.86 E-value=9.1e-09 Score=69.15 Aligned_cols=83 Identities=12% Similarity=0.015 Sum_probs=70.0
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHHhcC----CCeEEeCCcccccceEEEEeCC-CC-ChHHHHHHHHHhhhccHH
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD----CELVTAGELFGRSGYAIGLQKG-SP-WADAVTLAILDFHESTVC 79 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~----~~l~~~~~~~~~~~~~ia~~kg-s~-l~~~vn~~l~~l~~~G~~ 79 (90)
.+.++++.+|.+|++||++.+.+.+..++++. ..+.++........++|+++|+ ++ +++.|+.+|.++.++|++
T Consensus 164 ~~~~~a~~al~~G~vDa~~~~~~~~~~~~~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~ 243 (321)
T 3p7i_A 164 AGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEE 243 (321)
T ss_dssp CCHHHHHHHHHTTSSSEEEEEHHHHHTHHHHCHHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHH
T ss_pred CCHHHHHHHHHCCCceEEEechHHHHHHHHhCcchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHH
Confidence 45788999999999999999999988887653 4688876555556789999999 54 999999999999999999
Q ss_pred HHHHHHhcc
Q psy17442 80 YLFMAKVHL 88 (90)
Q Consensus 80 ~~l~~kW~~ 88 (90)
.++.+++..
T Consensus 244 ~~~l~~~g~ 252 (321)
T 3p7i_A 244 KAVLERLGW 252 (321)
T ss_dssp HHHHHHHTE
T ss_pred HHHHHhcCc
Confidence 999887754
No 40
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=98.19 E-value=1.6e-05 Score=53.28 Aligned_cols=84 Identities=7% Similarity=-0.081 Sum_probs=63.8
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe---CC----------ccc---------ccceEEEEeCCC-
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA---GE----------LFG---------RSGYAIGLQKGS- 60 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~---~~----------~~~---------~~~~~ia~~kgs- 60 (90)
-+++..+++.+|..|++|+++.+.+.+..+++.. +++++ ++ ++. ...+|++.|+|-
T Consensus 170 py~G~~~a~~aL~~G~VD~~~~~~~~~~~~i~~g-~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p 248 (312)
T 2f5x_A 170 PYKGTAPAMNDLLGKQVDLMCDQTTNTTQQITSG-KVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTP 248 (312)
T ss_dssp ECSSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTT-SSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCC
T ss_pred ccCChHHHHHHHHcCCccEEEechHHHHHHHHcC-CeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCC
Confidence 4678899999999999999999988777666642 22222 11 111 123689999994
Q ss_pred C-ChHHHHHHHHHhhhccHHHHHHHHhcc
Q psy17442 61 P-WADAVTLAILDFHESTVCYLFMAKVHL 88 (90)
Q Consensus 61 ~-l~~~vn~~l~~l~~~G~~~~l~~kW~~ 88 (90)
+ +.+.++++|.++.+++++.+..+++..
T Consensus 249 ~~vv~~l~~al~~~~~~p~~~~~~~~~g~ 277 (312)
T 2f5x_A 249 KPVVDKLVKSLQAGLADPKFQERMKQLGA 277 (312)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 3 999999999999999999998888754
No 41
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=98.18 E-value=1.6e-05 Score=53.07 Aligned_cols=84 Identities=6% Similarity=-0.145 Sum_probs=64.3
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe---CC----------cc--------c-ccceEEEEeCC-C
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA---GE----------LF--------G-RSGYAIGLQKG-S 60 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~---~~----------~~--------~-~~~~~ia~~kg-s 60 (90)
.+.+..+++.+|.+|++|+++.+.+.+..+++.. +++++ ++ ++ . ...+|++.|+| +
T Consensus 161 py~g~~~a~~al~~G~vD~~~~~~~~~~~~i~~g-~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p 239 (301)
T 2qpq_A 161 PYKGCGPALNDVLGSQIGLAVVTASSAIPFIKAG-KLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATP 239 (301)
T ss_dssp ECSSHHHHHHHHHTTSSSCEEEEHHHHHHHHHTT-SEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCC
T ss_pred ccCChHHHHHHHHCCCccEEEEcHHHHHHHHhcC-CeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCC
Confidence 4678899999999999999999988776666542 33332 11 01 1 12368999999 4
Q ss_pred C-ChHHHHHHHHHhhhccHHHHHHHHhcc
Q psy17442 61 P-WADAVTLAILDFHESTVCYLFMAKVHL 88 (90)
Q Consensus 61 ~-l~~~vn~~l~~l~~~G~~~~l~~kW~~ 88 (90)
+ +.+.++++|.++.+++++.+..+++..
T Consensus 240 ~~vv~~l~~al~~~~~~~~~~~~~~~~g~ 268 (301)
T 2qpq_A 240 MAVRQKLYDGIAKVMQRDDVQKKLADLGY 268 (301)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 3 999999999999999999999888754
No 42
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.13 E-value=2.1e-06 Score=55.65 Aligned_cols=61 Identities=10% Similarity=0.070 Sum_probs=43.6
Q ss_pred CChHHHHHHhhcCCceEEEe--ehhHHhHHHhcCCCeEEe--CC---cccccceEEEEeCCC-CChHHHHHHH
Q psy17442 6 KFSPSTVVRHGTKKLMAFIW--DSSRLDFEAAQDCELVTA--GE---LFGRSGYAIGLQKGS-PWADAVTLAI 70 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~--d~~~~~~~~~~~~~l~~~--~~---~~~~~~~~ia~~kgs-~l~~~vn~~l 70 (90)
.++.+++.+|++|++||+++ |.+... ++.++... .. ........|+++||+ ++++.+|+.|
T Consensus 142 ~~y~~~i~~L~~G~IDA~Iwn~d~~~a~----~~~~l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~~I 210 (231)
T 2ozz_A 142 LSYHESLQRIVKGDVDAVIWNVVAENEL----TMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVV 210 (231)
T ss_dssp CCHHHHHHHHHHTSCCEEEEEC-CHHHH----HHTTEEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHcCCccEEEEcCcchhhh----cCCCcceeccccccccccCCceEEEEECCCHHHHHHHHHHh
Confidence 67899999999999999999 888765 22334322 22 223344559999997 4999999875
No 43
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=98.07 E-value=3.3e-05 Score=51.83 Aligned_cols=85 Identities=11% Similarity=-0.060 Sum_probs=63.7
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcC-C-CeEEeCC----------cc--------c-ccceEEEEeCCC-C
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD-C-ELVTAGE----------LF--------G-RSGYAIGLQKGS-P 61 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~-~-~l~~~~~----------~~--------~-~~~~~ia~~kgs-~ 61 (90)
-+++..+++.+|..|++|+++.+.+.+..+++.. - -+.+.++ ++ . ...+|++.|+|- +
T Consensus 174 py~G~~~a~~al~~G~vD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~ 253 (314)
T 2dvz_A 174 PYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPM 253 (314)
T ss_dssp ECSSHHHHHHHHHHTSSSEEEEEHHHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCH
T ss_pred ccCCHHHHHHHHHcCCceEEEEcHHHHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCH
Confidence 4678899999999999999999988777666642 1 1222211 01 1 123689999994 3
Q ss_pred -ChHHHHHHHHHhhhccHHHHHHHHhcc
Q psy17442 62 -WADAVTLAILDFHESTVCYLFMAKVHL 88 (90)
Q Consensus 62 -l~~~vn~~l~~l~~~G~~~~l~~kW~~ 88 (90)
..+.+++++.++.+++++.+..+++..
T Consensus 254 ~vv~~l~~al~~~~~~p~~~~~~~~~g~ 281 (314)
T 2dvz_A 254 DVVNKLRDAAVVALKDPKVIKALDDQGS 281 (314)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTE
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 999999999999999999998888754
No 44
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.05 E-value=0.0021 Score=41.71 Aligned_cols=83 Identities=7% Similarity=-0.035 Sum_probs=54.2
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCC--cccccceEEEEe----CCCC-ChHHHHHHHHH----h
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGE--LFGRSGYAIGLQ----KGSP-WADAVTLAILD----F 73 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~--~~~~~~~~ia~~----kgs~-l~~~vn~~l~~----l 73 (90)
..+..+++.+|.+|++||++.+.+.+..+..+. .+.++.. .+......++++ +.+| +.+.+++++.+ +
T Consensus 138 ~~~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~ 216 (308)
T 2x26_A 138 YLTPADARAAFQQGNVDAWAIWDPYYSAALLQG-GVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALT 216 (308)
T ss_dssp ECCHHHHHHHHHTTSSSEEEEETTHHHHHHHHS-SEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred ecChHHHHHHHHcCCCCEEEecchhHHHHHhcC-CcEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999988887766543 3444422 222222223443 3344 77788877776 5
Q ss_pred hhcc-HHHHHHHHhcc
Q psy17442 74 HEST-VCYLFMAKVHL 88 (90)
Q Consensus 74 ~~~G-~~~~l~~kW~~ 88 (90)
++++ +..++..+|+.
T Consensus 217 ~~~~~~~~~~~~~~~~ 232 (308)
T 2x26_A 217 RSQREQSIALLAKTMG 232 (308)
T ss_dssp HHTHHHHHHHHHHHHT
T ss_pred HHCHHHHHHHHHHHhC
Confidence 5565 67788888763
No 45
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=96.91 E-value=0.0027 Score=42.14 Aligned_cols=82 Identities=4% Similarity=-0.048 Sum_probs=57.3
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe-CCcc-cc-cceEEEEeCC----CC-----ChHHHHHHHHHhh
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA-GELF-GR-SGYAIGLQKG----SP-----WADAVTLAILDFH 74 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~-~~~~-~~-~~~~ia~~kg----s~-----l~~~vn~~l~~l~ 74 (90)
+.++++.+|.+|++||++...|....+..+.....+. ...+ .. ....++++++ +| +.+.+++++..++
T Consensus 190 ~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~ 269 (341)
T 3un6_A 190 SPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMN 269 (341)
T ss_dssp CGGGHHHHHHTTSCSEEEEETTHHHHHHHSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHcCCCCEEEecCCHHHHHHhcCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999999887776654322222 2222 22 2356777654 33 6777788888888
Q ss_pred hccHHHHHHHHhcc
Q psy17442 75 ESTVCYLFMAKVHL 88 (90)
Q Consensus 75 ~~G~~~~l~~kW~~ 88 (90)
++++..++..+|+.
T Consensus 270 ~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 270 DRKQSVDIMTHHFK 283 (341)
T ss_dssp SHHHHHHHHHHHSS
T ss_pred hCHHHHHHHHHHhC
Confidence 88877788888874
No 46
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=95.21 E-value=0.038 Score=35.69 Aligned_cols=57 Identities=4% Similarity=-0.028 Sum_probs=38.4
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSP 61 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~ 61 (90)
+.+..+.+.+|.+|++|+.+.....+.....+..++..+...+...+.++.++++++
T Consensus 41 ~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~s~ 97 (302)
T 3ix1_A 41 PTNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSPLNHVMFLAEQD 97 (302)
T ss_dssp CSSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSCCEEEEEEGGGC
T ss_pred CCCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccCCEEEEEECCCC
Confidence 345568999999999999988754444444444456665544545567777777655
No 47
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=95.02 E-value=0.1 Score=34.06 Aligned_cols=58 Identities=12% Similarity=-0.038 Sum_probs=38.2
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcc-cccceEEEEeCCCCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELF-GRSGYAIGLQKGSPW 62 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~-~~~~~~ia~~kgs~l 62 (90)
+.+.++.+.+|.+|++|+.+...........+..++.++.... ...++++.++++++.
T Consensus 65 ~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~lvv~~~s~I 123 (324)
T 3ksx_A 65 FPAGPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVGWVPPTPKAETILVPSKSAL 123 (324)
T ss_dssp ESSHHHHHHHHHTTSCSEEEEESHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTCSC
T ss_pred CCCHHHHHHHHHCCCCCEEeecCHHHHHHHhcCCCEEEEEEecCCCCceEEEEeCCCCC
Confidence 4677889999999999997665443333333444566654332 234678888887764
No 48
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=94.97 E-value=0.06 Score=34.41 Aligned_cols=68 Identities=7% Similarity=-0.154 Sum_probs=42.3
Q ss_pred CChHHHHHHhhcCCceEEEeeh-hHHhHHHhcCCCeEEeCC-------cc-cccc-eEEEEeCC-CC-ChHHHHHHHHHh
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDS-SRLDFEAAQDCELVTAGE-------LF-GRSG-YAIGLQKG-SP-WADAVTLAILDF 73 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~-~~~~~~~~~~~~l~~~~~-------~~-~~~~-~~ia~~kg-s~-l~~~vn~~l~~l 73 (90)
-+.++++.+|.+|++||++... +... +.+.. +.++.. .. .+.+ .+++++++ +| +.+.+++++.+.
T Consensus 131 ~~~~~~~~al~~G~vDa~~~~~~~~~~-~~~~g--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a 207 (280)
T 1zbm_A 131 MPFDRIIQAVLDEEVDAGLLIHEGQIT-YADYG--LKCVLDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRES 207 (280)
T ss_dssp CCGGGHHHHHHTTSSSEEEECSGGGGT-GGGGT--CEEEEEHHHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCCEEEEechHHhH-HHhcC--CeEeccHHHHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHH
Confidence 3567899999999999988654 4433 33322 222211 01 1123 36889998 66 888888888766
Q ss_pred hhc
Q psy17442 74 HES 76 (90)
Q Consensus 74 ~~~ 76 (90)
.+.
T Consensus 208 ~~~ 210 (280)
T 1zbm_A 208 IAF 210 (280)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 49
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=94.85 E-value=0.12 Score=33.27 Aligned_cols=82 Identities=10% Similarity=-0.063 Sum_probs=53.8
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHH-HhcCCCeEEeCCcccccceEEEEeCCCCC--hH--HHHHHHHHhh---
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFE-AAQDCELVTAGELFGRSGYAIGLQKGSPW--AD--AVTLAILDFH--- 74 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~-~~~~~~l~~~~~~~~~~~~~ia~~kgs~l--~~--~vn~~l~~l~--- 74 (90)
+.+.+..+.+..+++|.+|.++...+..... ..+.- .+-...+....+.++.|+++|+ +. .+...+.++-
T Consensus 38 ~~~~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~--~~~~~~~~~n~lVlV~P~~~P~~i~~~~dl~~~l~~IA~a~ 115 (236)
T 3lr1_A 38 VIAVGTGQALKLGEAGDVDVVFVHARKLEDKFVADGF--GVNRKDVMYNDFVIVGPKNDPAGIAKAKTAAEALKLLATKG 115 (236)
T ss_dssp EEEECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTS--EEEEEEEEECCEEEEECTTCTTCGGGCSSHHHHHHHHHHHT
T ss_pred EEEcChHHHHHHHhcCCCCEEeecCchhHHHHHhcCC--CcceEEEEcCcEEEEEECCChhhccchhhHHHHHHHHhhCC
Confidence 5667889999999999999999887765443 33321 1222245566788999999986 32 2445555552
Q ss_pred --------hccHHHHHHHHh
Q psy17442 75 --------ESTVCYLFMAKV 86 (90)
Q Consensus 75 --------~~G~~~~l~~kW 86 (90)
.||+-....+-|
T Consensus 116 ~~fisRed~SGT~~~~~~l~ 135 (236)
T 3lr1_A 116 ATFISRGDKSGTHTKELDLW 135 (236)
T ss_dssp CCEEECCSSSHHHHHHHHHH
T ss_pred CcEEEccCCcchHHHHHHHH
Confidence 367766665554
No 50
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=94.84 E-value=0.064 Score=35.08 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=35.1
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcC-CCeEEeCCcccccceEEEEeCC
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD-CELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~-~~l~~~~~~~~~~~~~ia~~kg 59 (90)
+.++++.+|.+|++||++...+....+..+. ..+......+......+++++.
T Consensus 166 ~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (324)
T 3ksx_A 166 SPANARAAFAAGQVDAWAIWDPWYSALTLDGSARLLANGEGLGLTGGFFLSSRR 219 (324)
T ss_dssp CHHHHHHHHHTTCCSEEEEETTHHHHHHHTTSEEEEEESTTSCCCCEEEEEEHH
T ss_pred CHHHHHHHHHcCCCCEEEEccHHHHHHHhcCCcEEEecccccCCCccEEEECHH
Confidence 6789999999999999999988887766553 2222223333333445666654
No 51
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=94.65 E-value=0.16 Score=32.77 Aligned_cols=83 Identities=7% Similarity=-0.081 Sum_probs=53.1
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCCh----HHHHHHHHHhh----
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWA----DAVTLAILDFH---- 74 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l~----~~vn~~l~~l~---- 74 (90)
+.+.+..+.+..+.+|.+|.++...+.......... +..-...+....+.++.|+++|+. ..+...+.++.
T Consensus 38 ~~~~gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g-~~~~~~~~a~N~lVlV~P~~~P~~i~~~~dl~~~l~~Ia~~~~ 116 (237)
T 3muq_A 38 VIAAGTGKALKMGENGDVDLVMTHAPKAEGTFVEKG-YGVLPRKLMYNDFVIVGPKADPAKIKDDESVLDVFKEIANKNA 116 (237)
T ss_dssp EEEECHHHHHHHHHTTSSSEEEECCHHHHHHHHHTT-SEEEEEEEEEEEEEEEECTTCTTCCTTCSSHHHHHHHHHHTTC
T ss_pred EEEcChHHHHHHHhcCCCCEEEecCchhHHHHHhcC-CccccEEEEeCCEEEEEeCCChhhccchhhHHHHHHHHhhcCC
Confidence 456788899999999999999988776544332221 212223455556888889998852 23555565553
Q ss_pred -------hccHHHHHHHHh
Q psy17442 75 -------ESTVCYLFMAKV 86 (90)
Q Consensus 75 -------~~G~~~~l~~kW 86 (90)
.||+-....+-|
T Consensus 117 ~fisRedgSGTr~~~~~~~ 135 (237)
T 3muq_A 117 TFISRGDDSGTHKKEMGFW 135 (237)
T ss_dssp CEEECCSCCHHHHHHHHHH
T ss_pred cEEEccCCCcHHHHHHHHH
Confidence 477766665554
No 52
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=94.58 E-value=0.13 Score=33.96 Aligned_cols=56 Identities=11% Similarity=-0.078 Sum_probs=37.6
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSP 61 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~ 61 (90)
+.+..+.+.+|.+|++|+.+...........+..++.++... ...+.++.++++++
T Consensus 89 ~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~ivv~~~s~ 144 (341)
T 3un6_A 89 FNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALG-HHEGNVIMGQKGMH 144 (341)
T ss_dssp CSSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEES-CEECEEEEESTTCC
T ss_pred cCCHHHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEeec-CCCceEEEEcCCCC
Confidence 456889999999999999888766554433444445544322 24566777777765
No 53
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=94.55 E-value=0.18 Score=32.74 Aligned_cols=56 Identities=5% Similarity=-0.236 Sum_probs=38.8
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGS 60 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs 60 (90)
+.+..+.+.+|.+|++|+.+...........+..++..+.......+.++.+++++
T Consensus 71 ~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 126 (346)
T 3qsl_A 71 FAGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKN 126 (346)
T ss_dssp CSSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTT
T ss_pred cCChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCc
Confidence 56778899999999999988876655444444445555543334446777788865
No 54
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=94.52 E-value=0.11 Score=34.39 Aligned_cols=55 Identities=13% Similarity=-0.065 Sum_probs=34.6
Q ss_pred hHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCC
Q psy17442 8 SPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPW 62 (90)
Q Consensus 8 ~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l 62 (90)
.++.+.+|.+|++|+.+...........+..++.++.......+.+++++++++.
T Consensus 57 ~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lvv~~~s~i 111 (348)
T 3uif_A 57 GPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLVVPKNSTA 111 (348)
T ss_dssp HHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEEEETTCCC
T ss_pred cHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEEEECCCCC
Confidence 4667899999999998855444333333344555554334455667777777653
No 55
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=94.13 E-value=0.14 Score=34.69 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=37.2
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHh-cCCCeEEe-CCccc------ccceEE-EEeCCCCC
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAA-QDCELVTA-GELFG------RSGYAI-GLQKGSPW 62 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~-~~~~l~~~-~~~~~------~~~~~i-a~~kgs~l 62 (90)
...+..+++.++++|++|+++.+...... +. +.+++..+ .+... ...|++ +++|+|++
T Consensus 39 ~~~~~~~ci~aI~~g~AD~~~ld~~~~~~-A~~~~~~l~pi~~e~~~~~~~~~~~Y~avaVVkk~s~i 105 (334)
T 1h45_A 39 KRDSPIQCIQAIAENRADAVTLDGGFIYE-AGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSF 105 (334)
T ss_dssp ECSSHHHHHHHHHTTSCCBEEECHHHHHH-HHSTTTCEEEEEEEEEECSSSEESEEEEEEEEETTCCC
T ss_pred EcCCHHHHHHHHHcCCCCEEEeCccceEE-eecCccCCEEEEEEeecCCCCCCCceEEEEEEeCCCCC
Confidence 34688999999999999999998664333 33 34555433 22222 234565 45788764
No 56
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=93.93 E-value=0.13 Score=33.47 Aligned_cols=33 Identities=9% Similarity=0.025 Sum_probs=27.0
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD 37 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~ 37 (90)
+++.++++.+|.+|++||++...+....+..+.
T Consensus 173 ~~~~~~~~~al~~G~vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 173 VGAGAGAVTALRSGQIDAISNTDPVVSMLETSG 205 (346)
T ss_dssp CCSSHHHHHHHHHTSCSEEEEETTHHHHHHHTT
T ss_pred cCCcHHHHHHHHcCCccEEEecchhHHHHHhCC
Confidence 445679999999999999999988887665554
No 57
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=93.87 E-value=0.15 Score=33.70 Aligned_cols=57 Identities=14% Similarity=0.015 Sum_probs=40.8
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSP 61 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~ 61 (90)
+.+..+++.+|.+|++|..+...+.+.....+..+++++.......+.++.++++++
T Consensus 45 ~~~~~~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v~~~~~~~~~~~~~~~~~~ 101 (342)
T 4esw_A 45 PSNPSDVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSIGSLLDEPFTGICYLEGSG 101 (342)
T ss_dssp ESSGGGHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEEEEEECSCCEEEEEETTSS
T ss_pred CCChHHHHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEEEEeccCCccccccccccc
Confidence 456778899999999999888777666666665566666555555666777766543
No 58
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=93.50 E-value=0.19 Score=33.97 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=37.1
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHh-cCCCeEEe-CCcc------cccceEEE-EeCCCCC
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAA-QDCELVTA-GELF------GRSGYAIG-LQKGSPW 62 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~-~~~~l~~~-~~~~------~~~~~~ia-~~kgs~l 62 (90)
...+..+++.++++|++|++..+.... +.+. +.+++..+ .+.. ....|+++ ++|+|++
T Consensus 41 ~~~dy~~ci~ai~~g~aD~~~l~~~~~-~~A~~~~~~l~pi~ae~~~~~~~~~~~Y~sVaVVkkdS~i 107 (327)
T 1ryo_A 41 KKASYLDCIRAIAANEADAVTLDAGLV-YDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGF 107 (327)
T ss_dssp EESSHHHHHHHHHTTSCCBEEECHHHH-HHHHSTTTCCEEEEEEEEECSSSEESEEEEEEEEETTCCC
T ss_pred ecCCHHHHHHHHHcCCCcEEEeCccce-eEEecccCCCEEEEEEEecCCCCCCCceEEEEEEeCCCCC
Confidence 346889999999999999999987665 3333 44444432 2222 12345544 4778764
No 59
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=92.98 E-value=0.22 Score=33.67 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=36.4
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHh-cCCCeEEe-CCccc------ccceEE-EEeCCCCC
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAA-QDCELVTA-GELFG------RSGYAI-GLQKGSPW 62 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~-~~~~l~~~-~~~~~------~~~~~i-a~~kgs~l 62 (90)
...+..+++.++++|++|++..|..... .+. +.+++..+ .+... ...|++ +++|+|++
T Consensus 38 ~~~s~~~Ci~aI~~g~aD~~~ld~~~~~-~A~~~~~~l~pi~~e~~~~~~~~~~~Y~aVaVVkkdS~i 104 (332)
T 1iej_A 38 QKATYLDCIKAIANNEADAITLDGGQVF-EAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEF 104 (332)
T ss_dssp ECSSHHHHHHHHHTTSCCBEEECHHHHH-HHTSTTTCCEEEEEEEEECSSSEESEEEEEEEEETTCCC
T ss_pred EcCCHHHHHHHHHcCCCcEEEeCcccee-EecccccCCEEEEEEEecCCCCCCCceEEEEEEeCCCCC
Confidence 3468899999999999999999865543 333 33454432 22221 234554 45888764
No 60
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=92.87 E-value=0.44 Score=30.60 Aligned_cols=58 Identities=16% Similarity=0.027 Sum_probs=35.0
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCc-ccccceEEEEeCCCCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGEL-FGRSGYAIGLQKGSPW 62 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~-~~~~~~~ia~~kgs~l 62 (90)
+++.++.+.+|.+|++|+.+...........+..++.++... ....+.++++++++++
T Consensus 39 ~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~i 97 (308)
T 2x26_A 39 FPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSPI 97 (308)
T ss_dssp CSSHHHHHHHHHHTSCSEEEECSHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTCSC
T ss_pred CCCcHHHHHHHHCCCCCEEcccCcHHHHHHhcCCCeEEEEEecCCCCceEEEEeCCCCC
Confidence 445578999999999999876544332222233445444322 2234667777777654
No 61
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=92.82 E-value=0.19 Score=33.25 Aligned_cols=65 Identities=8% Similarity=-0.008 Sum_probs=38.1
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCC-CeEEeCCccc---ccceEEEEeCC----CC-ChHHHHHHHHH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDC-ELVTAGELFG---RSGYAIGLQKG----SP-WADAVTLAILD 72 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~-~l~~~~~~~~---~~~~~ia~~kg----s~-l~~~vn~~l~~ 72 (90)
+.++++.+|.+|++||++...+... +..... .......... ....+++++++ .| +.+.+.+++.+
T Consensus 154 ~~~~~~~al~~G~vDa~~~~~~~~~-~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~ 227 (348)
T 3uif_A 154 NPQVGAAALASGTVDGFFSLFDSYI-LEDRGVGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLK 227 (348)
T ss_dssp CHHHHHHHHHHTSSSEEEESTTHHH-HHHTTSEEEEEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCEEEechHHHH-HHhcCCcEEEEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHH
Confidence 5688999999999999998877653 223221 2111111121 23356777775 44 55555555443
No 62
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=92.54 E-value=0.41 Score=31.27 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=44.7
Q ss_pred cCChHHHHHHhhcC----CceEEEeehhHHhHHHhcCCCeEEeCCcccc-cceEEEEeCC----CC-----ChHHHHHHH
Q psy17442 5 VKFSPSTVVRHGTK----KLMAFIWDSSRLDFEAAQDCELVTAGELFGR-SGYAIGLQKG----SP-----WADAVTLAI 70 (90)
Q Consensus 5 ~~~~~~~~~~l~~G----~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~-~~~~ia~~kg----s~-----l~~~vn~~l 70 (90)
+++.++++.+|.+| ++||++++......... ...+.++.+...+ ...+++++++ .| +.+.+.+++
T Consensus 152 ~~~~~~~~~al~~G~~~~~vDa~~~ep~~~~~~~~-~g~~~~~~d~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~ 230 (321)
T 2x7q_A 152 LSNFKNLRDSVNLKDGVEGSDAFMWEYFTSKKYYD-NHEIKQIDQIYTPWSSWVVATSSDSLQAKSDVIKNFIDAVNQGI 230 (321)
T ss_dssp CCSHHHHHHHHTTCTTSCCCSEEEEEHHHHHHHHH-TTSEEEEEEEECSSCSEEEEEEHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHcCCCccceEEEEecCccchhhcc-CCceEEccccCCCCceEEEEEcHHHHhhCHHHHHHHHHHHHHHH
Confidence 35678999999999 99998876544443333 3345554433322 2346777764 33 556666777
Q ss_pred HHhhhcc
Q psy17442 71 LDFHEST 77 (90)
Q Consensus 71 ~~l~~~G 77 (90)
..+.++.
T Consensus 231 ~~~~~~p 237 (321)
T 2x7q_A 231 QYYNEHV 237 (321)
T ss_dssp HHHHHCH
T ss_pred HHHHHCH
Confidence 7776654
No 63
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=92.29 E-value=0.76 Score=30.89 Aligned_cols=75 Identities=12% Similarity=-0.105 Sum_probs=46.5
Q ss_pred HHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcc----cccceEEEEeC----CCC-Ch----HHHHHHHHHhhhcc
Q psy17442 11 TVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELF----GRSGYAIGLQK----GSP-WA----DAVTLAILDFHEST 77 (90)
Q Consensus 11 ~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~----~~~~~~ia~~k----gs~-l~----~~vn~~l~~l~~~G 77 (90)
++.+|.+|++||++...|....+... ...++...- ......+++++ .+| +. +.+.++...++++.
T Consensus 210 ~~~aL~~G~vDA~~~~~p~~~~~~~~--g~~~l~~~~~~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~p 287 (365)
T 2de3_A 210 QAAVLASGDVDALYSWLPWAGELQAT--GARPVVDLGLDERNAYASVWTVSSGLVRQRPGLVQRLVDAAVDAGLWARDHS 287 (365)
T ss_dssp HHHHHHSSSCSEEEEEHHHHHHHHHT--TEEESSCGGGSGGGCEEEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhCCCcCEEEEcchhHHHHHhC--CCEEEEeCcccCCCCceEEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCH
Confidence 68999999999999988877655442 355553321 12234567763 243 33 34566666777664
Q ss_pred -HHHHHHHHhc
Q psy17442 78 -VCYLFMAKVH 87 (90)
Q Consensus 78 -~~~~l~~kW~ 87 (90)
+..++..+|+
T Consensus 288 ~~~~~i~~~~~ 298 (365)
T 2de3_A 288 DAVTSLHAANL 298 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 6667766664
No 64
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=92.20 E-value=1.5 Score=28.27 Aligned_cols=79 Identities=13% Similarity=-0.088 Sum_probs=52.8
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe-CC-cccccceEEEEeCCCCChHHHHHHHHHhhhccHHHHHH
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA-GE-LFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYLFM 83 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~-~~-~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~l~ 83 (90)
.+..++...+.+|++++.+.....+..+.....++.++ +. .......+++++++++-.+..-+.|.-|........+.
T Consensus 217 ~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e~q~~~~ 296 (351)
T 4edp_A 217 SKSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSKEVQEKTA 296 (351)
T ss_dssp CCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTCEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHHHHH
T ss_pred CChHHHHHHHHcCCEEEEecCcHHHHHHHhcCCCeeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCHHHHHHHH
Confidence 46688999999999999888777666665555455443 21 11223467999999988787777777666544333443
Q ss_pred H
Q psy17442 84 A 84 (90)
Q Consensus 84 ~ 84 (90)
+
T Consensus 297 ~ 297 (351)
T 4edp_A 297 K 297 (351)
T ss_dssp H
T ss_pred H
Confidence 3
No 65
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=91.93 E-value=0.46 Score=32.50 Aligned_cols=69 Identities=16% Similarity=0.097 Sum_probs=44.4
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe--CCcccc-cceEEEEeCC----CC-----ChHHHHHHHHHhh
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA--GELFGR-SGYAIGLQKG----SP-----WADAVTLAILDFH 74 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~--~~~~~~-~~~~ia~~kg----s~-----l~~~vn~~l~~l~ 74 (90)
..++++.+|++|++||++...|....+..+.....++ .+.... ....++++++ +| +.+.+.++...+.
T Consensus 192 ~~~~~~~aL~~G~vDa~~~~eP~~~~~~~~g~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~ 271 (417)
T 2g29_A 192 PPAQMVANVKVNAMESFCVGEPWPLQTVNQGVGYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCD 271 (417)
T ss_dssp CGGGHHHHHHTTSCSEEEEETTHHHHHHHHTSCEEEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCEEEeCCCHHHHHHHcCCCEEEEechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999988877666654222222 222222 2356888764 33 4455666666676
Q ss_pred h
Q psy17442 75 E 75 (90)
Q Consensus 75 ~ 75 (90)
+
T Consensus 272 ~ 272 (417)
T 2g29_A 272 Q 272 (417)
T ss_dssp C
T ss_pred C
Confidence 5
No 66
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A
Probab=91.75 E-value=0.39 Score=35.55 Aligned_cols=58 Identities=22% Similarity=0.297 Sum_probs=37.7
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe-CCccc------ccceEEEE-eCCCCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA-GELFG------RSGYAIGL-QKGSPW 62 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~-~~~~~------~~~~~ia~-~kgs~l 62 (90)
-.+..+++.++++|++|+++.|...+..+-.+.+++..+ .+... ...|++|+ +|+|++
T Consensus 39 ~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~~l~pv~aE~y~~~~~~~~~Y~aVAVVkk~s~~ 104 (689)
T 1blf_A 39 RAFALECIRAIAEKKADAVTLDGGMVFEAGRDPYKLRPVAAEIYGTKESPQTHYYAVAVVKKGSNF 104 (689)
T ss_dssp CSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEEEEEECSSSEESEEEEEEEEESSCCC
T ss_pred cCCHHHHHHHHHcCCCCEEEEChhHeEEeccccCCCEEEEEEeecCCCCCCcceEEEEEEeCCCCC
Confidence 467899999999999999999966544222134565543 23222 23567554 677764
No 67
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=91.69 E-value=0.16 Score=35.09 Aligned_cols=31 Identities=6% Similarity=-0.137 Sum_probs=27.0
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHH
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEA 34 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~ 34 (90)
.++++.+++.+|.+|++||++.+.+...-..
T Consensus 67 ~y~~~~~a~~aL~nG~vDAiv~~~~~~~~le 97 (398)
T 2xxp_A 67 QSSSYLAAYKSLIAGETKAIVLNSVFENIIE 97 (398)
T ss_dssp ECSSHHHHHHHHHTTSCSCEEEEHHHHHHHH
T ss_pred ecCCHHHHHHHHHcCCCCEEEEchHHHHHHH
Confidence 5789999999999999999999988766554
No 68
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ...
Probab=91.62 E-value=0.42 Score=35.42 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=38.7
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe-CCccc------ccceEEEE-eCCCCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA-GELFG------RSGYAIGL-QKGSPW 62 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~-~~~~~------~~~~~ia~-~kgs~l 62 (90)
-.+..+++.++++|++|++..|...+..+-.+.+++..+ .+... ...|++|+ +|++++
T Consensus 39 ~~s~~~Ci~~I~~g~AD~~~ld~~~vy~A~~~~~~L~pi~~E~y~~~~~~~~~Y~aVAVVkk~s~~ 104 (691)
T 1cb6_A 39 RDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSF 104 (691)
T ss_dssp CSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEEEEEEETTEEESEEEEEEEEETTCCC
T ss_pred CCCHHHHHHHHhcCCCCEEEEChHHhheeccccCCCEEEEEEeecCCCCCCCceEEEEEEECCCCC
Confidence 467899999999999999999976544322235666543 33322 34567665 677764
No 69
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=91.38 E-value=0.51 Score=34.97 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=37.9
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe-CCccc------ccceEEEE-eCCCCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA-GELFG------RSGYAIGL-QKGSPW 62 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~-~~~~~------~~~~~ia~-~kgs~l 62 (90)
-.+..+++.++++|++|++..|...+..+-.+.+++..+ .+... ...|++|+ +|++++
T Consensus 39 ~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~~L~pi~~E~y~~~~~~~~~Y~aVAVVkk~s~~ 104 (686)
T 2d3i_A 39 KATYLDCIKAIANNEADAISLDGGQVFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEF 104 (686)
T ss_dssp CSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCCEEEEEEEBCCTTCCBSEEEEEEEEETTCCC
T ss_pred CCCHHHHHHHHHcCCCCEEEeCccceEEeccccCCCEEEEEEeecCCCCCCCceEEEEEEECCCCC
Confidence 467899999999999999999976654332234555533 33222 23466654 777764
No 70
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Probab=91.02 E-value=0.52 Score=34.99 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=38.4
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe-CCcc------cccceEEEE-eCCCCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA-GELF------GRSGYAIGL-QKGSPW 62 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~-~~~~------~~~~~~ia~-~kgs~l 62 (90)
-.+..+++..++.|++|++..|...+..+-...+++..+ .+.. ....|++|+ +|++++
T Consensus 61 ~~s~~~Ci~~I~~g~AD~~~ld~~~vy~A~~~~~~L~Pv~~E~y~~~~~~~~~YyaVAVVkk~s~~ 126 (698)
T 3v83_A 61 KASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGF 126 (698)
T ss_dssp ESSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEEEEEECSSSEESEEEEEEEEESSCCC
T ss_pred cCCHHHHHHHHHcCCCCEEEEChHHHHhhccCcCCcEEEEEEeeccCCCCCcceEEEEEEeCCCCC
Confidence 467899999999999999999977442222134566433 2222 133578775 888875
No 71
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=90.92 E-value=1.1 Score=29.11 Aligned_cols=57 Identities=7% Similarity=-0.050 Sum_probs=35.5
Q ss_pred CChH-HHHHHhhcCCceEEEeehhHHhHHHhcCCC-eEEeCCcccccc-eEEEEeCCC-CC
Q psy17442 6 KFSP-STVVRHGTKKLMAFIWDSSRLDFEAAQDCE-LVTAGELFGRSG-YAIGLQKGS-PW 62 (90)
Q Consensus 6 ~~~~-~~~~~l~~G~ida~i~d~~~~~~~~~~~~~-l~~~~~~~~~~~-~~ia~~kgs-~l 62 (90)
.+.+ ..+.+|.+|++|+.+...+.+.....+..+ +.++........ +++.+++++ +.
T Consensus 52 ~~g~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~i~v~~ds~~i 112 (321)
T 2x7q_A 52 PEGSGRLINLLNSNEVDIAIGLTEAFIADIAKGNENIHVLDTYVKSPLLWAVSTGSNRDDV 112 (321)
T ss_dssp TTCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEEEEEEEECSCCEEEEEEESSCTTC
T ss_pred CCCHHHHHHHHHcCCccEEecCcHHHHHHHHCCCCcEEEEEEecCCCcceEEEECCCCCCC
Confidence 4444 478999999999988776543333334334 776643332222 578888877 54
No 72
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=90.81 E-value=0.82 Score=29.72 Aligned_cols=51 Identities=10% Similarity=-0.017 Sum_probs=37.1
Q ss_pred ccCChHHHHHHhhcCCceE-EEeehhHHhHHHhc-CCCeEEeCCcccccceEEE
Q psy17442 4 DVKFSPSTVVRHGTKKLMA-FIWDSSRLDFEAAQ-DCELVTAGELFGRSGYAIG 55 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida-~i~d~~~~~~~~~~-~~~l~~~~~~~~~~~~~ia 55 (90)
.|.++.+.-.+|.+|.+|| ++-..+.+..+.++ +.++..++... .+++|+.
T Consensus 41 ~F~Dy~~pN~AL~~G~IDaN~fQH~pyL~~~nk~~g~~lv~v~~~~-~~p~giY 93 (245)
T 3up9_A 41 EYTDYVQPNTALNDGDLDANFYQTVPYLENAEKQFGYNFEAGEGIH-LEPLGVF 93 (245)
T ss_dssp ECSSSHHHHHHHHTTSCSEEEEEEHHHHHHHHHHHCCCEEECCCCE-ECCCEEE
T ss_pred EecCcccHHHHHHcCCCceeccCCHHHHHHHHHHCCCCEEEEeeec-ccceEEE
Confidence 5788999999999999999 66677888777654 55677776543 2344444
No 73
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=90.59 E-value=0.33 Score=31.22 Aligned_cols=55 Identities=2% Similarity=-0.213 Sum_probs=37.0
Q ss_pred ChHHHHHHhhcCCceEEEeeh-hH--HhHHHhcCCCeEEeCCcccccceEEEEeCCCC
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDS-SR--LDFEAAQDCELVTAGELFGRSGYAIGLQKGSP 61 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~-~~--~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~ 61 (90)
+.+..+.+|.+|.+|++..-. +. ..++.....++..++.......+|+++|+..+
T Consensus 38 ~~~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~Vp~~~~ 95 (256)
T 3l6g_A 38 DNAVAWQTVANGQADGMVSAWLPNTHKTQWQKYGKSVDLLGPNLKGAKVGFVVPSYMN 95 (256)
T ss_dssp CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEEEEEEEEEEETTSC
T ss_pred ChHHHHHHHHCCCCeEEEcccCCcccHHHHHHhCCceEEccccCCCceEEEEECCccC
Confidence 567789999999999987542 22 12332222357777766656679999999653
No 74
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B 1suv_E
Probab=90.38 E-value=0.6 Score=31.76 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=35.6
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeE-EeCCccc----------ccceEEEE-eCCCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELV-TAGELFG----------RSGYAIGL-QKGSP 61 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~-~~~~~~~----------~~~~~ia~-~kgs~ 61 (90)
-.+..++++.++.|++|++..|...+ |.+.+ +++. ++.+... ...|++|+ +|+++
T Consensus 34 a~s~~~Ci~~I~~g~AD~~~ld~~~v-y~Ag~-~~L~Pv~~E~y~~~~~~~~~~~~~YyaVAVVkK~s~ 100 (342)
T 3skp_A 34 AETTEDCIAKIMNGEADAMSLDGGFV-YIAGK-CGLVPVLAENYNKSDNCEDTPEAGYFAVAVVKKSAS 100 (342)
T ss_dssp CSSHHHHHHHHHHTSCCBEEECHHHH-HHHHH-TTCEEEEEEECSCCTTGGGSCCCCEEEEEEEETTCS
T ss_pred CCCHHHHHHHHHcCCCCEEEECchhe-EEecc-CCcEEEEEEEeecCccccCCCcceEEEEEEEEcCCC
Confidence 46789999999999999999997764 33333 3554 2322221 12577776 67554
No 75
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=90.17 E-value=0.37 Score=31.40 Aligned_cols=56 Identities=7% Similarity=-0.023 Sum_probs=36.8
Q ss_pred ChHHHHHHhhcCCceEEEee-hhHH--hHHHhcCCCeEEeCCcccccceEEEEeCCCCC
Q psy17442 7 FSPSTVVRHGTKKLMAFIWD-SSRL--DFEAAQDCELVTAGELFGRSGYAIGLQKGSPW 62 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d-~~~~--~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l 62 (90)
+.+..+++|.+|.+|++..- .+.. .++..-...+..++.......+|+++|+..++
T Consensus 52 ~~~~~~~AL~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~~~~i 110 (280)
T 3tmg_A 52 TTSIMYQYLASGKIDGTVSSWVPTADKFYYEKLKTKFVDLGANYEGTIQGFVVPSYVPI 110 (280)
T ss_dssp CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEEEEEEEEEEETTSCC
T ss_pred CcHHHHHHHHCCCCcEEEeccCCcccHHHHHHhcCcEEEccccCCCceEEEEECCCCCC
Confidence 45678999999999998753 2221 12211123577777666556799999997643
No 76
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=89.82 E-value=2.1 Score=27.45 Aligned_cols=53 Identities=13% Similarity=-0.117 Sum_probs=36.2
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe---CCcccccceEEEEeCCC
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA---GELFGRSGYAIGLQKGS 60 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~---~~~~~~~~~~ia~~kgs 60 (90)
+...-+.+|++|++|.+|........++.+ .+..++ +.......+.+.+++++
T Consensus 53 g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~-~~r~~~vdFg~~yYv~~h~li~~~~~ 108 (231)
T 2ozz_A 53 GADIRVECLLNGVYDMAVVSRLAAESYLSQ-NNLCIALELGPHTYVGEHQLICRKGE 108 (231)
T ss_dssp CHHHHHHHHHTTSCSEEEEEHHHHHHHHHH-SCEEEEEECCTTSSSCCEEEEEETTC
T ss_pred ChHHHHHHHHcCCCCEEEEecccchhhhcc-cCeEEEEEcCCCccccCeEEEEeCCC
Confidence 667788999999999999998888887766 333322 33333334446666654
No 77
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=89.51 E-value=2.6 Score=26.31 Aligned_cols=77 Identities=12% Similarity=0.009 Sum_probs=50.5
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEE---eCCcc-cccceEEEEeCCCCChHHHHHHHHHhhhccHHHH
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVT---AGELF-GRSGYAIGLQKGSPWADAVTLAILDFHESTVCYL 81 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~---~~~~~-~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~ 81 (90)
++..+++..+.+|++|+.+.-...+. . ...+.+ +++.. ....|++++.|+++- +.. +.+.+...+.+-++
T Consensus 154 ~~~~~~~~~v~~Ge~d~gi~~~s~a~---~-~~~~~~v~~~P~~~~~~~~~~~ai~k~~~~-~~A-~~Fi~fl~S~eaq~ 227 (237)
T 3r26_A 154 EDVRGALALVERNEAPLGIVYGSDAV---A-SKGVKVVATFPEDSHKKVEYPVAVVEGHNN-ATV-KAFYDYLKGPQAAE 227 (237)
T ss_dssp SSHHHHHHHHHTTSSSEEEEEHHHHH---H-CSSEEEEEECCGGGSCCEEEEEEEBTTCCS-HHH-HHHHHHHTSHHHHH
T ss_pred CCHHHHHHHHHcCCCCEEEEEecccc---c-CCCCeEEEECCcccCCeeeeeEEEEcCCCC-HHH-HHHHHHHcCHHHHH
Confidence 56788999999999999887655432 1 223433 33332 345678899999765 433 55555666777778
Q ss_pred HHHHhcc
Q psy17442 82 FMAKVHL 88 (90)
Q Consensus 82 l~~kW~~ 88 (90)
+..+|..
T Consensus 228 i~~~~Gf 234 (237)
T 3r26_A 228 IFKRYGF 234 (237)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 7777753
No 78
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=89.46 E-value=2.4 Score=27.24 Aligned_cols=69 Identities=7% Similarity=-0.045 Sum_probs=44.6
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCChHHHHHHHHHhhh
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHE 75 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~ 75 (90)
+..+....+.+|++.+.+.-...+..+.....++.++-+.-.....+++++|+++-.+..-+.|.-|..
T Consensus 186 ~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~k~s~~~~~A~~fi~fl~s 254 (324)
T 4i1d_A 186 SGAQSAQLLNDGEVDMEMAWNGRVSAVAKEGAKVSFTYNQGILQSTSLCILKGAPNLETAVKFLNEAVD 254 (324)
T ss_dssp SHHHHHHHHHHTSCSEEEEEHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEBTTCTTHHHHHHHHHHHTC
T ss_pred CcchHHHHHhCCCEEEEecccHHHHHHHhcCCCeEEEecCeeeeccEEEEECCCCCHHHHHHHHHHHhC
Confidence 567788999999999888765555444444445544422112234578999999876666666655543
No 79
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=89.31 E-value=0.59 Score=30.91 Aligned_cols=53 Identities=6% Similarity=-0.078 Sum_probs=37.0
Q ss_pred ccCChHHHHHHhhcCCceE-EEeehhHHhHHHhc-CCCeEEeCCcccccceEEEEe
Q psy17442 4 DVKFSPSTVVRHGTKKLMA-FIWDSSRLDFEAAQ-DCELVTAGELFGRSGYAIGLQ 57 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida-~i~d~~~~~~~~~~-~~~l~~~~~~~~~~~~~ia~~ 57 (90)
.|.++.+...+|.+|.+|+ ++...|.+..+.+. ..++..++... ..+.|+..+
T Consensus 57 ~F~Dy~~pN~AL~~G~IDaN~fQh~pyL~~~nk~~g~~Lv~v~~~~-~~p~glYS~ 111 (275)
T 3gxa_A 57 EFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQVP-TAPLGLYPG 111 (275)
T ss_dssp EESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHHHTCCEEEEEECC-BCCCEEEES
T ss_pred EeCCcHhHHHHHHcCCCCeeecCCHHHHHHHHHHcCCCEEEEeecc-ccceEEecC
Confidence 5778889999999999999 56667788766554 45677665432 344555443
No 80
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A
Probab=89.31 E-value=0.95 Score=33.54 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=26.9
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEE
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVT 42 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~ 42 (90)
-.+..+++.++++|++|+++.|......+. + +++..
T Consensus 374 ~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~-~-~gL~P 409 (689)
T 1blf_A 374 ASTTDDCIVLVLKGEADALNLDGGYIYTAG-K-CGLVP 409 (689)
T ss_dssp ESSHHHHHHHHHHTSCCEEEECHHHHHHHH-T-TTCEE
T ss_pred CCCHHHHHHHHHcCCCCEEEeCcHHHHHHh-h-cCCEE
Confidence 467899999999999999999966543332 3 66543
No 81
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Probab=89.21 E-value=1 Score=33.51 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=35.6
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe-CCccc----------ccceEEEE-eCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA-GELFG----------RSGYAIGL-QKG 59 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~-~~~~~----------~~~~~ia~-~kg 59 (90)
-.+..++++.++.|++|++..|...+.. +.+ +++..+ .+... ...|++|+ +|+
T Consensus 390 a~s~~~Ci~~I~~g~AD~~~ld~~~vy~-Ag~-~~L~Pv~~E~y~~~~~~~~~~~~~YyaVAVVkks 454 (698)
T 3v83_A 390 AETTEDCIAKIMNGEADAMSLDGGFVYI-AGK-CGLVPVLAENYNKSDNCEDTPEAGYFAVAVVKKS 454 (698)
T ss_dssp ESSHHHHHHHHHHTSCCEEEECHHHHHH-HHH-TTCEEEEEEECSCCTTGGGCCCCCEEEEEEEETT
T ss_pred CCCHHHHHHHHHcCCCCEEEECcHHHhh-hhh-cCceEEEEEeeccccccccCCCCceEEEEEEecC
Confidence 4678999999999999999998776432 333 666533 33221 23578776 664
No 82
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris}
Probab=88.72 E-value=3.4 Score=27.03 Aligned_cols=69 Identities=7% Similarity=-0.191 Sum_probs=44.8
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCChHHHHHHHHHhhh
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHE 75 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~ 75 (90)
+..+....+.+|++.+.+.-.........+..++.++-+.......+++++|+++-.+..-+.|.-|..
T Consensus 221 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~i~k~s~~~~~A~~fi~~l~s 289 (365)
T 3rpw_A 221 TAAQPPQLILDGEADMCLAYTGSMSKLALEGAPIDLTFNQGFVYYDFFSIPKGAPNYDNALKLLSWRLD 289 (365)
T ss_dssp STTHHHHHHHTTSCSEEEEEHHHHHHHHHHTCSEEEEEEEEEEEEEEEECBTTCTTHHHHHHHHHHHTC
T ss_pred CccHHHHHHHcCCeEEEEehhHHHHHHHhCCCCeEEeeCCeeeeceEEEEECCCCCHHHHHHHHHHHcC
Confidence 556788999999999888665555444444445554422112234478999999877777666665544
No 83
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=88.29 E-value=3 Score=26.57 Aligned_cols=78 Identities=14% Similarity=0.038 Sum_probs=49.0
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe---CCcc-cccceEEEEeCCCCChHHHHHHHHHhhhccHHH
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA---GELF-GRSGYAIGLQKGSPWADAVTLAILDFHESTVCY 80 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~---~~~~-~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~ 80 (90)
.++..+++..+.+|++|+.|.-...+. . ...+.++ ++.. ....|++++.|++. .+ .-+.+.+...+.+-+
T Consensus 169 ~~~~~~~~~~v~~Gead~giv~~s~a~---~-~~~v~~v~~~P~~~~~~i~~~~ai~k~~~-~~-~A~~Fi~fl~S~eaq 242 (253)
T 3gzg_A 169 SESVRAALMLVSRGEAPLGIVYGSDAR---A-DAKVRVVATFPDDSHDAIVYPVAALKNSN-NP-ATAAFVSWLGSKPAK 242 (253)
T ss_dssp ESSHHHHHHHHHTTSSSEEEEEHHHHH---H-CTTEEEEEECCGGGSCCEEEEEEECTTCC-CT-THHHHHHHTTSHHHH
T ss_pred cCCHHHHHHHHHcCCCCEEEEEhhccc---c-CCCceEEEECCcccCceeEEEEEEECCCC-hH-HHHHHHHHHcCHHHH
Confidence 367788999999999999887655433 1 2334443 3332 34568899988851 12 233344455667777
Q ss_pred HHHHHhcc
Q psy17442 81 LFMAKVHL 88 (90)
Q Consensus 81 ~l~~kW~~ 88 (90)
++.++|..
T Consensus 243 ~i~~~~Gf 250 (253)
T 3gzg_A 243 AIFARRGF 250 (253)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 77777753
No 84
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ...
Probab=88.20 E-value=1 Score=33.41 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=26.9
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEE
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVT 42 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~ 42 (90)
-.+..+++.++++|++|++..|......+-+ +.+..
T Consensus 374 ~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~--~gL~P 409 (691)
T 1cb6_A 374 ASTTEDCIALVLKGEADAMSLDGGYVYTAGK--CGLVP 409 (691)
T ss_dssp ESSHHHHHHHHHHTSCCBEEECHHHHHHHHH--TTCEE
T ss_pred CCCHHHHHHHHHcCCCCEEEeCcHHHHHHhh--cCCEE
Confidence 3578999999999999999999665543333 55543
No 85
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=88.12 E-value=3.7 Score=26.40 Aligned_cols=76 Identities=11% Similarity=-0.139 Sum_probs=47.0
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCChHHHHHHHHHhhhccHHHHH
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYLF 82 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~l 82 (90)
++..+....+.+|++++.+.-...+........++.++-+.......+++++|+++-.+..-+.|.-|. +.+.++.
T Consensus 180 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~-s~e~q~~ 255 (320)
T 4euo_A 180 SGGAQSQQLIASAEAPFGSVWNGRMTALEQSGVKVETSWAQNITAADSLVVPKGTKNKDAAMKFIALAT-SAQAQAD 255 (320)
T ss_dssp CSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTTCCCEEEEEEEEEEEEEEECBTTCSCHHHHHHHHHHHT-SHHHHHH
T ss_pred CCCchHHHHHHcCCEEEEEeecHHHHHHHhCCCCeEEEecCceeecceEEEECCCCCHHHHHHHHHHHh-CHHHHHH
Confidence 456788999999999988776555544444444444432211223347899999887666666665554 4444433
No 86
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=86.76 E-value=0.94 Score=29.42 Aligned_cols=53 Identities=8% Similarity=-0.075 Sum_probs=36.8
Q ss_pred hHHHHHHhhcCCceEEEeeh---hHHhHHHhcCCCeEEeCCcccccceEEEEeCCC
Q psy17442 8 SPSTVVRHGTKKLMAFIWDS---SRLDFEAAQDCELVTAGELFGRSGYAIGLQKGS 60 (90)
Q Consensus 8 ~~~~~~~l~~G~ida~i~d~---~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs 60 (90)
.+..+.+|.+|.+|++..-. ....++.+-...+..++.......+|+++|+..
T Consensus 202 ~~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~Vp~~~ 257 (268)
T 2b4l_A 202 AGPMWTAIATGSADASLSAWLPNTHKAYAAKYKGKYDDIGTSMTGVKMGLVVPQYM 257 (268)
T ss_dssp TTHHHHHHHHTSSSEEEEEEETTTTHHHHHHTTTSEEEEEEEEEEEEEEEEEETTC
T ss_pred hHHHHHHHHCCCCeEEehhhcCcCcHHHHHHHcCCeEEccCCCCCCeEEEEEehhh
Confidence 36788999999999984332 111233333457888877766678999999875
No 87
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=86.14 E-value=1.4 Score=28.73 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=30.8
Q ss_pred ccCChHHHHHHhhcCCceE-EEeehhHHhHHHhc-CCCeEEeCC
Q psy17442 4 DVKFSPSTVVRHGTKKLMA-FIWDSSRLDFEAAQ-DCELVTAGE 45 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida-~i~d~~~~~~~~~~-~~~l~~~~~ 45 (90)
.|.++.+.-.+|.+|.+|+ ++...+.+..+.+. +.++..++.
T Consensus 44 ~F~Dy~~pN~AL~~G~iDaN~fQh~pyL~~~~k~~g~~lv~v~~ 87 (252)
T 4ib2_A 44 VFDDYVQPNEVVESGEFDANYFQHVPYLESFNEEKGTHLVDAGD 87 (252)
T ss_dssp ECSSSSHHHHHHHTTSSSEEEEEEHHHHHHHHHHHCCCEEEEEE
T ss_pred EecChhhHHHHHHcCCcCeeecCCHHHHHHHHHHCCCCEEEEee
Confidence 5788889999999999999 55556677666554 456666643
No 88
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=86.00 E-value=1.6 Score=32.40 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=27.3
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEE
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVT 42 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~ 42 (90)
-.+..+++.++++|++|++..|..... .+.+ +.+..
T Consensus 374 ~~s~~~Ci~~I~~g~AD~~~ld~~~~y-~A~~-~gL~P 409 (686)
T 2d3i_A 374 VDETKDCIIKIMKGEADAVALDGGLVY-TAGV-CGLVP 409 (686)
T ss_dssp ESSHHHHHHHHHHTSCCBEEECHHHHH-HHHH-TTCEE
T ss_pred CCCHHHHHHHHHcCCCCEEEECchHHh-hhhc-CCcee
Confidence 467899999999999999999976654 2333 55543
No 89
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=85.98 E-value=1.3 Score=28.84 Aligned_cols=52 Identities=6% Similarity=-0.060 Sum_probs=36.6
Q ss_pred ccCChHHHHHHhhcCCceE-EEeehhHHhHHHhc-CCCeEEeCCcccccceEEEE
Q psy17442 4 DVKFSPSTVVRHGTKKLMA-FIWDSSRLDFEAAQ-DCELVTAGELFGRSGYAIGL 56 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida-~i~d~~~~~~~~~~-~~~l~~~~~~~~~~~~~ia~ 56 (90)
.|.++.+.-.+|.+|.+|| ++...+.+..+.++ +.++..++.. ..++.|+-.
T Consensus 35 ~F~Dy~~pN~AL~~G~iDaN~fQh~pyL~~~nk~~g~~Lv~v~~~-~~~p~glYS 88 (245)
T 3ir1_A 35 EFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQV-PTAPLGLYP 88 (245)
T ss_dssp EESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHHHTCCEEEEEEC-CBCCCEEEE
T ss_pred EeCCcHhHHHHHHCCCcCeeccCCHHHHHHHHHHcCCCEEEEeee-cccceEEec
Confidence 5678888999999999999 66667788776654 5567776543 234444443
No 90
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=85.95 E-value=2.8 Score=27.67 Aligned_cols=57 Identities=9% Similarity=-0.053 Sum_probs=34.2
Q ss_pred cCChHHHHHHhhcCCceEEEeeh-hHHhHHHhcCCCeEEeCCc-----ccccceEEEEeCCCCCh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDS-SRLDFEAAQDCELVTAGEL-----FGRSGYAIGLQKGSPWA 63 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~-~~~~~~~~~~~~l~~~~~~-----~~~~~~~ia~~kgs~l~ 63 (90)
..+.++.+.+|.+|++|.++... +.... ..+. ....+... .......++++++|++.
T Consensus 53 ~~~~~~~i~aL~~G~vDia~~~~~~~~~~-~~~~-~~~~~a~~~~~~g~~~y~~~lvv~~ds~i~ 115 (321)
T 3p7i_A 53 APDYAGIIQGMRFNKVDIAWYGNLSAMEA-VDRA-NGQVFAQTVAADGSPGYWSVLIVNKDSPIN 115 (321)
T ss_dssp CSSHHHHHHHHHTTSCSEEECCHHHHHHH-HHHS-CEEEEEEEEETTCCSSBCEEEEEETTCSCC
T ss_pred cCCHHHHHHHHHcCCCcEEEEChHHHHHH-HHhc-CCEEEEEEeccCCCcceEEEEEEECCCCCC
Confidence 46788999999999999998653 33322 2222 22222111 11123468889998864
No 91
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=85.86 E-value=0.73 Score=34.17 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=36.9
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHh-cCCCeEE-eCCccc------ccceEEEE-eCCCCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAA-QDCELVT-AGELFG------RSGYAIGL-QKGSPW 62 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~-~~~~l~~-~~~~~~------~~~~~ia~-~kgs~l 62 (90)
-.+..++++.++.|++|++..|..-+. .+. ...++.. +.+... ...|++|+ +|++++
T Consensus 48 ~~d~~~Ci~~I~~g~AD~~~ld~~~vy-~A~~~~~~L~Pi~~E~y~~~~~~~~~YyaVAVVkK~s~i 113 (687)
T 3mc2_A 48 KMSHPECIRDISANKVDAVTVDGALVA-EADLPHHSLKPIMAEYYGSKDDPKTHYYVVAMAKKGTGF 113 (687)
T ss_dssp CSCHHHHHHHHHTTSCCBEEECTTGGG-SCSSTTCCEEEEEEEEEECSSSEECEEEEEEEEETTTCC
T ss_pred CCCHHHHHHHHHCCCCCEEEEChHHHH-hhhcccCCceEEEEEeeecCCCCCceeEEEEEEECCCCC
Confidence 467899999999999999999866432 222 2344543 222221 34577774 778875
No 92
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=85.23 E-value=1.1 Score=28.90 Aligned_cols=51 Identities=16% Similarity=0.019 Sum_probs=34.9
Q ss_pred ccCChHHHHHHhhcCCceE-EEeehhHHhHHHhc-CCCeEEeCCcccccceEEE
Q psy17442 4 DVKFSPSTVVRHGTKKLMA-FIWDSSRLDFEAAQ-DCELVTAGELFGRSGYAIG 55 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida-~i~d~~~~~~~~~~-~~~l~~~~~~~~~~~~~ia 55 (90)
.|.++.+.-.+|.+|++|+ ++...+.+..+.+. +.++..++... .++.|+.
T Consensus 40 ~F~Dy~~pN~AL~~G~IDaN~fQh~pyL~~~nk~~g~~lv~v~~~~-~~p~glY 92 (237)
T 3k2d_A 40 TFTDYVTPNAALDDGSIDMNAFQHKPYLDRQVEDRDYKLTIAGNTF-VYPIAGY 92 (237)
T ss_dssp EESCTTSHHHHHHHTSCSEEEEEEHHHHHHHHHHHCCCEEEEEECC-CCCCEEE
T ss_pred EeCChHhHHHHHHcCCCCeeccCCHHHHHHHHHHCCCCEEEEeeec-ccceEEe
Confidence 5778888999999999999 55567777766554 55677665432 3344444
No 93
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=84.78 E-value=2.8 Score=27.38 Aligned_cols=58 Identities=7% Similarity=-0.164 Sum_probs=34.3
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCc---cc--ccceEEEEeCCCCCh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGEL---FG--RSGYAIGLQKGSPWA 63 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~---~~--~~~~~ia~~kgs~l~ 63 (90)
+.+.++.+.+|.+|++|.++...........+. ....+... .. ..+..++++++|++.
T Consensus 43 ~~~~~~~i~al~~G~vDi~~~~~~~~~~~~~~~-~~~~~a~~~~~~g~~~~~~~lvv~~ds~i~ 105 (310)
T 3n5l_A 43 APDYAGIIQGMRFDKVDIAWYGNKAAMEAVDRA-HGEIFAQTVAASGAPGYWSLLIANKDSKID 105 (310)
T ss_dssp CSSHHHHHHHHHTTSCSEEECCHHHHHHHHHHS-CEEEEEEEEETTCCSEEEEEEEEETTCSCC
T ss_pred CCCHHHHHHHHHcCCCCEEEECcHHHHHHHHhc-CCeEEEEEeccCCCcceEEEEEEECCCCCC
Confidence 467889999999999999986633322222222 22222111 11 123468889998854
No 94
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=84.74 E-value=4.5 Score=25.82 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=20.3
Q ss_pred ccCChHHHHHHhhcCCceEEEeeh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
.+.+..+++.+|.+|++|+.+...
T Consensus 165 ~~~~~~~~~~al~~G~vda~~~~~ 188 (314)
T 1us5_A 165 IRVSASQGIQLMQDKRADALFYTV 188 (314)
T ss_dssp ECCCHHHHHHHHHTTSCSEEEEEE
T ss_pred ecCCHHHHHHHHHcCCccEEEEcc
Confidence 345778999999999999998764
No 95
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=84.27 E-value=4.3 Score=27.27 Aligned_cols=70 Identities=4% Similarity=-0.292 Sum_probs=45.8
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhc---CCCeEEeCCc---cccc-----------ceEEEEeCCCCChHHHH
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQ---DCELVTAGEL---FGRS-----------GYAIGLQKGSPWADAVT 67 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~---~~~l~~~~~~---~~~~-----------~~~ia~~kgs~l~~~vn 67 (90)
+-+...|+..|.+|..|+.+....++...... ..++.++-+. -... ..+++++++.+-.+.|-
T Consensus 185 y~G~~gA~rcL~eG~gDVAfv~~~~v~~~~~~~~~~~d~~lLc~dg~~~pi~~~~~C~l~~~P~~~vv~r~~~~~~~~i~ 264 (327)
T 1ryo_A 185 YFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGGKEDLIW 264 (327)
T ss_dssp TCHHHHHHHHHHTTSCSEEEEETTHHHHHCCSHHHHTTEEEECTTSCEEEGGGGGGSCSEEEECCEEEECSSSCCHHHHH
T ss_pred ccCcHHHHHHHHcCCccEEEEeccchhhhhhhcccccceeEEccCCcccCCCCCCcceeccCCCceEEEeCCCCHHHHHH
Confidence 34477899999999999988887776544332 2356665321 1112 23888988755567777
Q ss_pred HHHHHhh
Q psy17442 68 LAILDFH 74 (90)
Q Consensus 68 ~~l~~l~ 74 (90)
..|.++.
T Consensus 265 ~~l~~~~ 271 (327)
T 1ryo_A 265 ELLNQAQ 271 (327)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777765
No 96
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=83.98 E-value=1.4 Score=28.53 Aligned_cols=42 Identities=10% Similarity=-0.011 Sum_probs=31.2
Q ss_pred ccCChHHHHHHhhcCCceEE-EeehhHHhHHHhc-CCCeEEeCC
Q psy17442 4 DVKFSPSTVVRHGTKKLMAF-IWDSSRLDFEAAQ-DCELVTAGE 45 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~-i~d~~~~~~~~~~-~~~l~~~~~ 45 (90)
.|.++.+.-.+|.+|++|+- +...|.+..+.+. +.++..++.
T Consensus 37 ~F~Dy~~pN~AL~~G~iDaN~fQh~pyl~~~~k~~g~~lv~v~~ 80 (240)
T 3tqw_A 37 TFSDYNTPNEALADGSVDANMFQHLPYLKAQIEMRGYKIVSIGK 80 (240)
T ss_dssp EESCTTSHHHHHHTTSCSEEEEEEHHHHHHHHHHHCCCEEEEEE
T ss_pred EeCChHhHHHHHHcCCcCeeccCCHHHHHHHHHHCCCCEEEEee
Confidence 56788889999999999995 5567777766554 456666544
No 97
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=83.90 E-value=4.8 Score=26.50 Aligned_cols=57 Identities=12% Similarity=-0.067 Sum_probs=38.4
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHHhc---------CCCeEEeCCcccccceEEEEeCCCCCh
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQ---------DCELVTAGELFGRSGYAIGLQKGSPWA 63 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~---------~~~l~~~~~~~~~~~~~ia~~kgs~l~ 63 (90)
.+..+.+..|.+|++|..+............ ..++..+.. +...+..++++++++++
T Consensus 74 ~g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~~f~~~~~~~d~~~v~~-~~~~~~~lvv~~ds~i~ 139 (327)
T 4ddd_A 74 TGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLGFYEKMLPMDNLRMLAS-LHKEYLTIVVKKSSNIS 139 (327)
T ss_dssp CCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCGGGTTSCCCTTEEEEEE-EEEEEEEEEEETTSSCC
T ss_pred CcHHHHHHHHHcCCCcEEEECcHHHHHHHhCcCcccccCCCcchhehhc-cCCccEEEEEECCCCCC
Confidence 4567889999999999988776654433321 124655543 33467889999988753
No 98
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=83.87 E-value=6.6 Score=25.28 Aligned_cols=74 Identities=7% Similarity=-0.243 Sum_probs=46.7
Q ss_pred HHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCc--ccccceEEEEeCCCCChHHHHHHHHHhhhccHHHHH
Q psy17442 9 PSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGEL--FGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYLF 82 (90)
Q Consensus 9 ~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~--~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~l 82 (90)
.+....+.+|++.+.+.-...+..+...+.++..+-+. -.....+++++++++-.+..-+.|.-|.......++
T Consensus 192 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e~~~~~ 267 (330)
T 4eqb_A 192 DEMKGYMIQNNVAIGVTFSGEASQMLEKNENLRYVVPTEASNLWFDNMVIPKTVKNQDSAYAFINFMLKPENALQN 267 (330)
T ss_dssp TTHHHHHHTTCCSEEEEEHHHHHHHHHHCTTEEEECCTTCEEEEEEEEBCBTTCSCHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEechHHHHHHHhhCCCeEEEeCCCccceEEEEEEEECCCCCHHHHHHHHHHhcCHHHHHHH
Confidence 46788899999988887665555554445555544211 112234689999998777777777766554433333
No 99
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1- butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB; 1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A* 3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 4fim_A* 4fjp_A* 4for_A* 4g2z_A* 4grk_A* 2b6d_A* 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* ...
Probab=82.69 E-value=1.5 Score=29.73 Aligned_cols=26 Identities=12% Similarity=0.004 Sum_probs=22.7
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHH
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRL 30 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~ 30 (90)
-.+..+++..++.|++|++..|...+
T Consensus 33 ~~s~~dCi~~I~~g~AD~~~ld~g~v 58 (335)
T 3tod_A 33 ASTTDDCIVLVLKGEADALNLDGGYI 58 (335)
T ss_dssp ESSHHHHHHHHHHTSCCEEEECHHHH
T ss_pred cCCHHHHHHHHHcCCCCEEEECchhe
Confidence 46789999999999999999997744
No 100
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=82.19 E-value=2 Score=27.86 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=30.6
Q ss_pred ccCChHHHHHHhhcCCceE-EEeehhHHhHHHhc-CCCeEEeCC
Q psy17442 4 DVKFSPSTVVRHGTKKLMA-FIWDSSRLDFEAAQ-DCELVTAGE 45 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida-~i~d~~~~~~~~~~-~~~l~~~~~ 45 (90)
.|.+..+.-.+|.+|.+|+ ++...+.+..+.+. ..++..++.
T Consensus 37 ~F~dy~~pN~AL~~G~iD~n~fQh~pyl~~~~k~~g~~Lv~v~~ 80 (246)
T 4ef1_A 37 TYTDYVLPNKALESGDIDANYFQHVPFFNEAVKENDYDFVNAGA 80 (246)
T ss_dssp ECSSSSHHHHHHHHTSCSEEEEEEHHHHHHHHHHHTCCEEEEEE
T ss_pred EeCCchhHHHHHHCCCCCEEecCCHHHHHHHHHHCCCCEEEEee
Confidence 4678888889999999998 55667777766554 445666543
No 101
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=82.17 E-value=2.8 Score=26.77 Aligned_cols=41 Identities=7% Similarity=0.021 Sum_probs=29.8
Q ss_pred ccCChHHHHHHhhcCCceEE-EeehhHHhHHHhc-CCCeEEeC
Q psy17442 4 DVKFSPSTVVRHGTKKLMAF-IWDSSRLDFEAAQ-DCELVTAG 44 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~-i~d~~~~~~~~~~-~~~l~~~~ 44 (90)
.|.+..+...+|.+|++|+. +...+.+..+.+. .-++..++
T Consensus 36 ~f~d~~~~n~AL~~G~iD~n~fq~~~~l~~~~~~~g~~l~~v~ 78 (241)
T 1xs5_A 36 EFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQEHNGDLVSVG 78 (241)
T ss_dssp ECSCHHHHHHHHHHTSSSEEEEEEHHHHHHHHHHHTCCEEEEE
T ss_pred EcCChHHHHHHHHcCCCCEeccCCHHHHHHHHHHCCCCEEEEE
Confidence 57889999999999999995 4566777655433 44555553
No 102
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=82.13 E-value=0.83 Score=29.53 Aligned_cols=57 Identities=2% Similarity=-0.105 Sum_probs=37.6
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhH-HHhcCCCeEEeCCcccccceEEEEeCCCC
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDF-EAAQDCELVTAGELFGRSGYAIGLQKGSP 61 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~-~~~~~~~l~~~~~~~~~~~~~ia~~kgs~ 61 (90)
+.+.+..+.+..+.+|.+|.++...+.... ++.+.- ..-...+....+.++.|+++|
T Consensus 38 ~~~~gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~--~~~~~~~a~N~LVLV~P~~~P 95 (242)
T 3kn3_A 38 WVAVGTGNALKLGENCDVDVVFVHAPKVELEYVEKGF--GIDRTPVMYNDFVIIGNPSFK 95 (242)
T ss_dssp EEEECHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTS--EEEEEEEECSCEEEEECTHHH
T ss_pred EEEcCcHHHHHHHhcCCCCEEEecChHhHHHHHhcCC--CccceEEEcceEEEEEeCCCc
Confidence 567788899999999999999887665443 333321 111123444457788888776
No 103
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=81.65 E-value=2 Score=27.68 Aligned_cols=31 Identities=10% Similarity=-0.030 Sum_probs=25.8
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcC
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD 37 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~ 37 (90)
+.+++..+|.+|++||.+.-.|.+.....++
T Consensus 131 ~~~~~~~al~~G~vDa~~~~eP~~~~a~~~~ 161 (283)
T 3hn0_A 131 TAGEITQGILAGKVNRAVLGEPFLSIALRKD 161 (283)
T ss_dssp SHHHHHHHHHHTSCSEEEECTTHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCCEEEecccHHHHHHhhC
Confidence 4789999999999999998888887665544
No 104
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=81.46 E-value=7.7 Score=24.69 Aligned_cols=57 Identities=4% Similarity=-0.141 Sum_probs=36.0
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHh-c---------CCCeEEeCCcccccceEEEEeCCCCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAA-Q---------DCELVTAGELFGRSGYAIGLQKGSPW 62 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~-~---------~~~l~~~~~~~~~~~~~ia~~kgs~l 62 (90)
..+..+.+..|.+|++|..+........... + ..++..+.. +...++.+++++++|+
T Consensus 57 ~~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~lvv~~~~~i 123 (314)
T 1us5_A 57 TGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAA-LYPEVVHVVARKDAGI 123 (314)
T ss_dssp CSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEE-EEEEEEEEEEETTSSC
T ss_pred cCcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchhehhh-cCcceEEEEEECCCCC
Confidence 3456789999999999988876544321111 1 124554432 3345678888988775
No 105
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=80.97 E-value=3.2 Score=27.13 Aligned_cols=53 Identities=17% Similarity=0.136 Sum_probs=35.2
Q ss_pred ChHHHHHHhhcCCceEEEee-hhH-HhHHHh--cCCCeEEeCCcccccceEEEEeCC
Q psy17442 7 FSPSTVVRHGTKKLMAFIWD-SSR-LDFEAA--QDCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d-~~~-~~~~~~--~~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
+.+.++++|.+|.+|++... .+. ..++.. ....+..++.......+|+++|+.
T Consensus 43 ~~~~~~~Al~~G~iD~~~~~w~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~~ 99 (298)
T 2rin_A 43 SVPVTYTSLKNKDIDVFLGNWMPTMEADIAPYREDKSVETVRENLAGAKYTLATNAK 99 (298)
T ss_dssp CHHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHTTTSEEEEEEEEEEEEEEEEEEHH
T ss_pred CcHHHHHHHHcCCcEEEhhhccCchHHHHHHHhhCCCEEEeccCCCCCeEEEEEchh
Confidence 56778999999999998733 222 122222 235677776654556799999884
No 106
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=78.90 E-value=1.1 Score=28.69 Aligned_cols=58 Identities=5% Similarity=-0.186 Sum_probs=38.1
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCC
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPW 62 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l 62 (90)
+...+..+++.+|.+|++|..+.+.+.-.....+..+ +....+...+..+++++++|+
T Consensus 36 v~~~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~--l~~~~i~~d~lvvvv~~~~p~ 93 (264)
T 4ecf_A 36 VQGGGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQ--LVDHRVAVVGITPIVNKKVGV 93 (264)
T ss_dssp EEEECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGG--EECCEEEEEEEEEEECTTSSC
T ss_pred EEeCCCHHHHHHHHcCCCchhhccCCCChhHHhhccC--CEEEEEEEEEEEEEEcCCCcc
Confidence 3456789999999999999999886643210000112 223455667788888888775
No 107
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=78.76 E-value=2.8 Score=26.91 Aligned_cols=56 Identities=11% Similarity=0.026 Sum_probs=35.2
Q ss_pred cCChHHHHHHhhcCCceEEEee-hhHH---------------hHHH--hc----CCCeEEeCCcccccceEEEEeCCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWD-SSRL---------------DFEA--AQ----DCELVTAGELFGRSGYAIGLQKGS 60 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d-~~~~---------------~~~~--~~----~~~l~~~~~~~~~~~~~ia~~kgs 60 (90)
+.+.+..+.+|.+|.+|+++.- ...+ .++. +. ..++..++.......+++++|+.+
T Consensus 42 ~g~~~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~~~ 119 (275)
T 1sw5_A 42 LGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALAVRADW 119 (275)
T ss_dssp CCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCEEEEEEHHH
T ss_pred CCchHHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHHHHhhhcCCeEEeccCCCCCeeEEEEeHHH
Confidence 4567889999999999998731 1110 0111 11 125677765544567999999744
No 108
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=78.73 E-value=3.2 Score=30.82 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=27.8
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEE
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVT 42 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~ 42 (90)
-.+..+++.++++|++||+..|...+..+- + ++|+.
T Consensus 371 ~~s~~dCi~~I~~g~ADa~tldgg~vy~Ag-~-~~L~P 406 (687)
T 3mc2_A 371 EETPEDCIAATMKGEADAMSLDGGFAYVAG-H-CGLVP 406 (687)
T ss_dssp ESSHHHHHHHHHHTSSCBEEECHHHHHHHH-H-TTCEE
T ss_pred CCCHHHHHHHHhCCCCCEEEECchHheehh-h-cCcEE
Confidence 367899999999999999999977654433 3 66653
No 109
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=78.65 E-value=13 Score=25.14 Aligned_cols=82 Identities=5% Similarity=-0.095 Sum_probs=48.9
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHH-h--c-C--------------CCeEEeCCc-----ccccceEEEEeCCCCC
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEA-A--Q-D--------------CELVTAGEL-----FGRSGYAIGLQKGSPW 62 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~-~--~-~--------------~~l~~~~~~-----~~~~~~~ia~~kgs~l 62 (90)
++..+++..|.+|++|+.|.-.+.+...- . . . ....++... ..+..|++++.++++-
T Consensus 227 ~~v~~~l~~v~~G~aDag~vy~S~a~~~~l~~v~lP~~~n~~~~~~~~~y~~v~v~~~~~~~~~~~Pi~y~~ai~k~a~~ 306 (354)
T 3k6v_A 227 SMEVELSSALETGEIDYLYIYRSVAEQHGFEYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIPNNAEN 306 (354)
T ss_dssp SSHHHHHHHHHHTSCSEEEEEHHHHHHHTCEEEECCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTCTT
T ss_pred CCHHHHHHHHHcCCCCEEEEEhhhhhhcCCcEEeCChhhccccccccccccceeeeccccccccCCceeEeEEeecCCCC
Confidence 57789999999999999877665543320 0 0 0 122222111 1234689999999765
Q ss_pred hHHHHHHHHHhhhccHHHHHHHHhcc
Q psy17442 63 ADAVTLAILDFHESTVCYLFMAKVHL 88 (90)
Q Consensus 63 ~~~vn~~l~~l~~~G~~~~l~~kW~~ 88 (90)
.+.....+ +...+.+-+++.+++..
T Consensus 307 ~~~A~~Fi-~fL~S~eaq~i~~~~Gf 331 (354)
T 3k6v_A 307 SELATEFV-ALLLGETGQQIFIENGQ 331 (354)
T ss_dssp HHHHHHHH-HHHHSHHHHHHHHHTTC
T ss_pred HHHHHHHH-HHHcCHHHHHHHHHCCC
Confidence 54444444 34445566777766643
No 110
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=78.14 E-value=3.5 Score=24.89 Aligned_cols=51 Identities=20% Similarity=0.066 Sum_probs=34.8
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCCh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWA 63 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l~ 63 (90)
..+..+.+..|.+|++|..|...+. ....+.. ..+..+++.++++++.|+.
T Consensus 54 ~~~~~~~~~~l~~g~~Dl~i~~~~~------~~~~~~~--~~l~~~~~~~v~~~~hpl~ 104 (241)
T 3oxn_A 54 PLQHDRLSDQLTYEGADLAICRPTG------PVEPLRS--EILGRVGVLCLLSKQHPLA 104 (241)
T ss_dssp ECCGGGHHHHHHTSCCSEEEECCSS------CCTTEEE--EEEECCCEEEEEETTSGGG
T ss_pred ECCcccHHHHHHcCCCCEEEecCCC------CCcccee--EEeecccEEEEEeCCCCcc
Confidence 3456678899999999999885332 1233332 2356778888889988754
No 111
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=77.73 E-value=3.8 Score=24.60 Aligned_cols=51 Identities=10% Similarity=-0.054 Sum_probs=33.0
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCCh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWA 63 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l~ 63 (90)
..+..+.+..|.+|++|..+...+. ...++.. ..+..+.+.++++++.|+.
T Consensus 43 ~~~~~~l~~~L~~g~iDl~i~~~~~------~~~~l~~--~~l~~~~~~~v~~~~hpla 93 (218)
T 2y7p_A 43 RPNAGNLKEDMESGAVDLALGLLPE------LQTGFFQ--RRLFRHRYVCMFRKDHPSA 93 (218)
T ss_dssp CCCTTTHHHHHHHTSSCEEEECCTT------CCTTEEE--EEEEEECEEEEEETTCSSC
T ss_pred eCCcccHHHHHhCCCceEEEecCCC------CCcceeE--EEeeeccEEEEEcCCCCCC
Confidence 3456778899999999998875332 1123322 2355667777788877653
No 112
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=76.77 E-value=5.3 Score=25.74 Aligned_cols=58 Identities=9% Similarity=-0.090 Sum_probs=37.0
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCC-cccccceEEEEeCCCC
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGE-LFGRSGYAIGLQKGSP 61 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~-~~~~~~~~ia~~kgs~ 61 (90)
....+..+.+.+|.+|++|.++...+.....+... .+..... .+......++++++.|
T Consensus 58 l~~~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~-~~~~~~~~~l~~d~lvlv~~~~hp 116 (294)
T 3cvg_A 58 WYKSDTTVTINYLKDGIVDVGITYSPVAERISIKH-GISESPSYYAFRDHFMLIGPPSNP 116 (294)
T ss_dssp EEECCHHHHHHHHHTTSCSEEEESCHHHHHHHHHT-TSBCSSCEEEEEEEEEEEECTTCT
T ss_pred EEeCCHHHHHHHHHcCCCcEEEEcCchhhhHHHhC-CcccceeeeEEeccEEEEecCCCh
Confidence 34568889999999999999888654322211111 1111112 3556777888999988
No 113
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=76.61 E-value=3 Score=27.36 Aligned_cols=54 Identities=7% Similarity=-0.066 Sum_probs=36.5
Q ss_pred CChHHHHHHhhcCCceEEEee-hhH-HhHHHh--cCCCeEEeCCcccccceEEEEeCC
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWD-SSR-LDFEAA--QDCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d-~~~-~~~~~~--~~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
-+.+..+.+|.+|.+|++..- .+. ..++.. ....+..++.......+|+++|+.
T Consensus 44 ~~~~~~~~Al~~G~iDi~~e~w~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~~ 101 (309)
T 1r9l_A 44 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKK 101 (309)
T ss_dssp CCHHHHHHHHHHTSSCEEEEEEETTTHHHHHHTTGGGTEEECSCSEEEEEEEEEEEHH
T ss_pred CchHHHHHHHhcCCceEEeccccCccHHHHHHhhcCCcEEEecccCCCceEEEEEchh
Confidence 367888999999999998632 222 233322 124677877655566799999985
No 114
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=76.56 E-value=3.1 Score=26.51 Aligned_cols=58 Identities=7% Similarity=0.007 Sum_probs=36.0
Q ss_pred cccCChHHHHHHhhcCC-ceEEEeeh-hHHhHHHhcCCCeEE-eCCcccccceEEEEeCCCC
Q psy17442 3 FDVKFSPSTVVRHGTKK-LMAFIWDS-SRLDFEAAQDCELVT-AGELFGRSGYAIGLQKGSP 61 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~-ida~i~d~-~~~~~~~~~~~~l~~-~~~~~~~~~~~ia~~kgs~ 61 (90)
+.+.+..+.+.++.+|. .|.++... ..+..+.++.. +.. ....+.....+|++++++|
T Consensus 54 ~~~~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl-~~~~~~~~~a~~~lvl~~~~~~~ 114 (253)
T 3gzg_A 54 VSYAASSALARQIEQGAPADVFLSADLEWMDYLQQHGL-VLPAQRHNLLGNTLVLVAPASSK 114 (253)
T ss_dssp EEEECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTS-SCGGGEEEEEEECEEEEEETTCC
T ss_pred EEECChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCC-cCCCcceeEEeeEEEEEEECCCC
Confidence 45677888999999997 99999844 45555544421 000 0012334556788888865
No 115
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=76.23 E-value=12 Score=23.82 Aligned_cols=66 Identities=5% Similarity=-0.046 Sum_probs=39.4
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcc---------------------------cccceEEEEeC
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELF---------------------------GRSGYAIGLQK 58 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~---------------------------~~~~~~ia~~k 58 (90)
.+..+.+..+.+|++|+.+.-...+.. ..-.+..+++.. ....+++++.|
T Consensus 186 ~~~~~~~~~v~~Ge~d~gi~~~s~a~~---~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~k 262 (292)
T 3cfz_A 186 SKETDLLAPLEAGAFDYLFIYKSVANQ---HHLKYIELPKEINLGYYEYADTYKKVALKIIAKNKTINAKPIVYGMTVPT 262 (292)
T ss_dssp SSGGGGHHHHHTTSSSEEEEEHHHHHH---TTCEEECCCTTTSSCCGGGHHHHTTEEEEEGGGTEEEECCCCEEEEECCT
T ss_pred ccHHHHHHHHHCCCCCEEEEEehhhhh---CCCCEEECChhhcccCccccchhhceeeeeccccccccCCceeEEEEeec
Confidence 456688999999999998765544322 111122222211 12357899999
Q ss_pred CCCChHHHHHHHHHhh
Q psy17442 59 GSPWADAVTLAILDFH 74 (90)
Q Consensus 59 gs~l~~~vn~~l~~l~ 74 (90)
+++-.+..-+.+.-|.
T Consensus 263 ~a~~~~~A~~Fi~fl~ 278 (292)
T 3cfz_A 263 NAPHKKEAIEFVKFVL 278 (292)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9876555555555555
No 116
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=76.02 E-value=9.8 Score=22.46 Aligned_cols=72 Identities=7% Similarity=-0.083 Sum_probs=40.6
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCChHHHHHHHHHhh
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFH 74 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~ 74 (90)
+.+++...++..+.+|.--+++-......+..........+........++++.+++.+....+...+..++
T Consensus 140 ~~~~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 211 (232)
T 3ho7_A 140 YSGGSMEAFMRLVESGQGITFIPQLTVEQLSPSQKELVRPFGMPRPVREVRLAVRQDYSRRKLREQLIGLLR 211 (232)
T ss_dssp EESCCHHHHHHHHHTTCCEEEEEGGGGGGSCHHHHTTEECBCSSEEEEEEEEEEETTCSCHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHcCCcEEEecHHHhhhhcccCceEEEEccCCCceEEEEEEEeCCCccCHHHHHHHHHHH
Confidence 457888889999999986666654433222111111122222223345678888998765555555444443
No 117
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=75.71 E-value=9.2 Score=24.79 Aligned_cols=73 Identities=15% Similarity=0.091 Sum_probs=46.6
Q ss_pred ccCChHHHHHHhhcCCceE-EEeehhHHhHHHhcC--CCeEEeCCccc----------------ccceEEEEeCCCCChH
Q psy17442 4 DVKFSPSTVVRHGTKKLMA-FIWDSSRLDFEAAQD--CELVTAGELFG----------------RSGYAIGLQKGSPWAD 64 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida-~i~d~~~~~~~~~~~--~~l~~~~~~~~----------------~~~~~ia~~kgs~l~~ 64 (90)
.|.++.+.=.+|.+|.+|| ++-..+.+..+.+.+ .++..++..+. +.+--||+|.+. .
T Consensus 39 ~F~Dy~~pN~AL~~G~iDaN~fQH~pyL~~~~k~~~g~~lv~v~~~~~~P~glYS~k~ksl~dl~~Ga~IaIPnDp---t 115 (249)
T 4got_A 39 VLSDYKMYNKALADKEVDANYFQHIPYLEQEMKENTDYKLVNAGAVHLEPFGIYSKTYKSLKDLPDGATIILTNNV---A 115 (249)
T ss_dssp CCSSTHHHHHHHHTTSCSEEEEEEHHHHHHHHHHCTTCCEEEEEEEEECCCEEECSSCSSGGGCCTTCEEEEECCG---G
T ss_pred EeCCccchhHHHHcCCcceeeccCHHHHHHHHHhCCCCceEEeeeeeeccccccccCcCchhhcCCCCEEEEecCc---c
Confidence 5778889999999999999 566677887666543 35665543320 223345555542 1
Q ss_pred HHHHHHHHhhhccHH
Q psy17442 65 AVTLAILDFHESTVC 79 (90)
Q Consensus 65 ~vn~~l~~l~~~G~~ 79 (90)
.-.++|.-|++.|.+
T Consensus 116 N~~RaL~lL~~aGLI 130 (249)
T 4got_A 116 EQGRMLAMLENAGLI 130 (249)
T ss_dssp GHHHHHHHHHHTTSC
T ss_pred chHHHHHHHHHCCCE
Confidence 245677777777653
No 118
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=74.71 E-value=5.7 Score=25.24 Aligned_cols=50 Identities=8% Similarity=0.004 Sum_probs=30.8
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCCh
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWA 63 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l~ 63 (90)
.+..+.+..|.+|++|..|...+. ...++.. ..+..+++.++++++.|+.
T Consensus 126 ~~~~~~~~~l~~g~~Dlai~~~~~------~~~~l~~--~~L~~~~~~~v~~~~hpla 175 (312)
T 2h9b_A 126 MGTKAQTEALKEGRIDAGFGRLKI------SDPAIKH--SLLRNERLMVAVHASHPLN 175 (312)
T ss_dssp CCHHHHHHHHHTTSCSEEEESSCC------CCTTEEE--EEEEEEEEEEEEETTSGGG
T ss_pred CCHHHHHHHHHcCCCCEEEEeCCC------CCCCceE--EEeecceEEEEEcCCCccc
Confidence 456788999999999998875432 1122222 1344556666666666543
No 119
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=74.38 E-value=4.1 Score=25.39 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=33.4
Q ss_pred cccCChHHHHHHhhcCC-ceEEEeeh-hHHhHHHhcCCCeEE-eCCcccccceEEEEeCCC
Q psy17442 3 FDVKFSPSTVVRHGTKK-LMAFIWDS-SRLDFEAAQDCELVT-AGELFGRSGYAIGLQKGS 60 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~-ida~i~d~-~~~~~~~~~~~~l~~-~~~~~~~~~~~ia~~kgs 60 (90)
+.+.+..+.+..+.+|. .|.++... ..+..+.++.. +.. ....+.....++++++++
T Consensus 38 ~~~~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~-~~~~~~~~~~~~~lvl~~~~~~ 97 (237)
T 3r26_A 38 SSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKA-IDTATRQTLLGNSLVVVAPKAS 97 (237)
T ss_dssp EEEECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTC-BCGGGCEEEEEECEEEEEESSC
T ss_pred EEECCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCC-CCCCceeeeEcceEEEEEeCCC
Confidence 45677888999999987 99999854 44554444321 000 001233345566777664
No 120
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=73.07 E-value=12 Score=21.91 Aligned_cols=70 Identities=4% Similarity=-0.188 Sum_probs=40.9
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe--CCcccccceEEEEeCCCCChHHHHHHHHHhh
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA--GELFGRSGYAIGLQKGSPWADAVTLAILDFH 74 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~--~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~ 74 (90)
+.+++...++..+.+|.--+++-.. .+...... ..+..+ ........+.++.+++......+...+..++
T Consensus 135 ~~~~~~~~~~~~v~~g~gi~~~p~~-~~~~~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 206 (222)
T 4ab5_A 135 RHSELTIAIIQLVASRRGIAALPYW-TVMPYLEK-GYVVHRQITADGLQSKLYAAIRTEDTDKSYLNNFCQIIR 206 (222)
T ss_dssp EECSCHHHHHHHHHTTSCBEEEEHH-HHHHHHHT-TSCEEEEESTTCCEEEEEEEEEGGGTTCHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHcCCeEEEcchH-HhHHHhhc-CcEEEEecCCCccceEEEEEEeCCcccCHHHHHHHHHHH
Confidence 4577888899999999866665543 33333332 233332 3323355677888887555444544444443
No 121
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=71.89 E-value=2.7 Score=26.54 Aligned_cols=22 Identities=0% Similarity=-0.219 Sum_probs=17.7
Q ss_pred cCChHHHHHHhhcCCceEEEee
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWD 26 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d 26 (90)
..+.++...+|.+|++|+.+..
T Consensus 44 ~~~~~~~~~~l~~G~~D~~~~~ 65 (280)
T 1zbm_A 44 IEDIETLNRKAFNAEYEVTAIS 65 (280)
T ss_dssp ECCHHHHHHHGGGTCCSEEEEE
T ss_pred eCCHHHHHHHHHcCCCCEEEEC
Confidence 3466777899999999998874
No 122
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=71.63 E-value=6.2 Score=24.49 Aligned_cols=20 Identities=5% Similarity=-0.130 Sum_probs=17.5
Q ss_pred cCChHHHHHHhhcCCceEEE
Q psy17442 5 VKFSPSTVVRHGTKKLMAFI 24 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i 24 (90)
+.+..+++.+|++|++|++.
T Consensus 78 ~~~~~~~~~~l~~G~~D~~~ 97 (267)
T 3mpk_A 78 VDTVEELIAKLRSGEADMAG 97 (267)
T ss_dssp ESSHHHHHHHHHHTSCSEEE
T ss_pred cCCHHHHHHHHHCCCccEEe
Confidence 45789999999999999965
No 123
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=70.71 E-value=3.3 Score=26.18 Aligned_cols=26 Identities=8% Similarity=-0.064 Sum_probs=19.6
Q ss_pred CccccCChHHHHHHhhcCCceEEEee
Q psy17442 1 MRFDVKFSPSTVVRHGTKKLMAFIWD 26 (90)
Q Consensus 1 ~~~~~~~~~~~~~~l~~G~ida~i~d 26 (90)
|+..+++.++++.++++|+.-.++.|
T Consensus 1 ~~~~~~~ie~Ai~~lr~G~~Viv~Dd 26 (204)
T 1tks_A 1 MTNIFTPIEEALEAYKNGEFLIVMDD 26 (204)
T ss_dssp --CCSCCHHHHHHHHHTTCCEEEESS
T ss_pred CCCchhhHHHHHHHHHCCCeEEEEeC
Confidence 67788999999999999995545443
No 124
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=70.58 E-value=14 Score=24.37 Aligned_cols=55 Identities=11% Similarity=-0.038 Sum_probs=39.2
Q ss_pred ccCChHHHHHHhhcCCceEEEeeh---------hHHhHHHhcCCCeEEeCCcccccceEEEEeCCC
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDS---------SRLDFEAAQDCELVTAGELFGRSGYAIGLQKGS 60 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~---------~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs 60 (90)
-.++.++++.+|.+|++|..+..- .++..+.. .++.++++.+-+-.+.+..++|.
T Consensus 31 p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~--~~l~I~gE~~l~I~h~Ll~~~g~ 94 (283)
T 2qmx_A 31 PCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLR--RPVVILAETFVKVEHCLLGLPGA 94 (283)
T ss_dssp EESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHH--SSEEEEEEEEEECCCEEEECSSC
T ss_pred cCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhc--CCcEEEEEEEEeeeeeEecCCCC
Confidence 357899999999999998766431 12233333 56889988777777777777764
No 125
>3rqt_A Putative uncharacterized protein; ligand binding component, ABC-type import system, nickel, SI DI-peptides, structural genomics; HET: MSE HIS EPE; 1.50A {Staphylococcus aureus}
Probab=69.47 E-value=21 Score=24.65 Aligned_cols=70 Identities=10% Similarity=-0.061 Sum_probs=40.0
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCC-CChHHHHHHHHHhhh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGS-PWADAVTLAILDFHE 75 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs-~l~~~vn~~l~~l~~ 75 (90)
+.+....+.+|++|++|++..-.+.....++++..+.+... .....+.+++.-.+ |+.+.|-++|.....
T Consensus 203 ~~d~~~~~~al~~GeiD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~N~~~~~~~d~vRqAl~~aiD 273 (486)
T 3rqt_A 203 QEDGNNRVRNLESQKDDLITDVPVNKVQDIENNQNLKVSKE-SGFRTSLLMYNHTNKKMTKSVREALDHIID 273 (486)
T ss_dssp CCCHHHHHHHHHTTSCSEEESCCGGGHHHHHHCTTEEEEEE-EEEEEEEEEECTTSTTCCHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHcCCCCEEcCCCHHHHHHHhcCCCeEEEEe-cCCceEEEEecCCCCccccHHHHHHHHhcC
Confidence 56778899999999999975322222222334455555421 12234557776554 565556666654443
No 126
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=68.85 E-value=3.3 Score=27.28 Aligned_cols=24 Identities=8% Similarity=-0.163 Sum_probs=20.9
Q ss_pred ccCChHHHHHHhhcCCceEEEeeh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
.+.+..+++.+|.+|++|+++...
T Consensus 180 ~~~g~~~a~~aL~~G~vDa~~~~~ 203 (327)
T 4ddd_A 180 AELKSSEQAQALCDNKIDVMVDVI 203 (327)
T ss_dssp ECCCHHHHHHHHHTTSCSBEEEEE
T ss_pred hcCCHHHHHHHHHcCCCCEEEEcc
Confidence 467889999999999999998754
No 127
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=68.78 E-value=4.4 Score=23.74 Aligned_cols=23 Identities=9% Similarity=-0.172 Sum_probs=18.2
Q ss_pred cCChHHHHHHhhcCCceEEEeeh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
..+..+....|.+|++|..|...
T Consensus 40 ~~~~~~l~~~l~~g~~Dl~i~~~ 62 (209)
T 2ql3_A 40 EDTQNRLRTQLEGGELDVAIVYD 62 (209)
T ss_dssp ECCHHHHHHHHHTTSCSEEEEES
T ss_pred ECcHHHHHHHHHcCCccEEEEec
Confidence 34567788899999999988653
No 128
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=68.47 E-value=15 Score=21.45 Aligned_cols=70 Identities=9% Similarity=-0.161 Sum_probs=40.3
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCChHHHHHHHHHh
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDF 73 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l 73 (90)
+.+++...++..+.+|.--+++-...+. .......-............++++.+++......+...+..+
T Consensus 134 ~~~~~~~~~~~~v~~g~Gi~~lp~~~~~-~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 203 (219)
T 3kos_A 134 MVFDSSVTMLEAAQAGMGVAIAPVRMFT-HLLSSERIVQPFLTQIDLGSYWITRLQSRPETPAMREFSRWL 203 (219)
T ss_dssp EEESCHHHHHHHHHTTSCBEEEEGGGCH-HHHHTTSSBCCCCCCBCSCEEEEEEETTSCCCHHHHHHHHHH
T ss_pred eEEccHHHHHHHHHcCCCeEeehHHhhH-HHHHcCCeeccccCCccCCcEEEEecccccCCHHHHHHHHHH
Confidence 5678888899999999866666554443 333322111222223334567888888865544444444333
No 129
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=68.00 E-value=8.5 Score=24.60 Aligned_cols=50 Identities=6% Similarity=-0.066 Sum_probs=30.4
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCCh
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWA 63 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l~ 63 (90)
.+..+.+..|.+|++|..|...+. ...++.. ..+..+++.++++++.|+.
T Consensus 126 ~~~~~~~~~l~~g~~Dlai~~~~~------~~~~l~~--~~L~~~~~~~v~~~~hpl~ 175 (313)
T 2h98_A 126 CGTKDQINALKQGKIDLGFGRLKI------TDPAIRR--IMLHKEQLKLAIHKHHHLN 175 (313)
T ss_dssp CCHHHHHHHHHHTSCSEEEESSCC------CCTTEEE--EEEEEEEEEEEEETTSGGG
T ss_pred CChHHHHHHHHcCCCCEEEEeCCC------CCCCeeE--EEeeeCcEEEEEcCCCccc
Confidence 456788999999999998875432 1122222 1344556666666666543
No 130
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=67.49 E-value=13 Score=23.80 Aligned_cols=40 Identities=5% Similarity=-0.208 Sum_probs=27.1
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA 43 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~ 43 (90)
.+.+.++...+|.+|++|..+...........+..++.++
T Consensus 39 ~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~i~ 78 (283)
T 3hn0_A 39 VVDSPDLAQALLIKQETDIAVLPMINAANLYNKGIKIKLA 78 (283)
T ss_dssp EESCHHHHHHHHHTTCCSEEEEEHHHHHHHHHTTCSCEEE
T ss_pred EeCCHHHHHHHHHCCCCCEEEEcHHHHHHHHHCCCCeEEE
Confidence 4677888999999999999887755444433333234433
No 131
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis}
Probab=67.20 E-value=22 Score=22.73 Aligned_cols=73 Identities=11% Similarity=-0.162 Sum_probs=44.2
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHHhcCCC-eEEeCC--cccccceEEEEeCCCCChHHHHHHHHHhhhccHHH
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCE-LVTAGE--LFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCY 80 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~-l~~~~~--~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~ 80 (90)
.+..++...+.+|++.+.+.-...+..+..+..+ +.++-+ .......+++++|++ -.+..-+.|.-|. +.+..
T Consensus 193 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~g~~~~~~~~~i~k~s-~~~~A~~Fi~~l~-s~e~q 268 (333)
T 3pu5_A 193 TAFNDPVVLLTSGEGAIGPGWDGRTFIAEDSTKGMVKWVDPTEGAVSSGPVMAVVKGG-KEDLAKAFMNYAL-GEEAQ 268 (333)
T ss_dssp CSTTHHHHHHHHTSCSEEEEEHHHHHHHHHHTTTSSEEECCTTCCEEECCEEEEBTTS-CHHHHHHHHHHHT-SHHHH
T ss_pred CChHHHHHHHHcCCEEEEecccHHHHHHHhCCCCceeEEcCCCceeeccceEEEeCCC-CHHHHHHHHHHHc-CHHHH
Confidence 4556788999999998877665554444444333 554421 111224578999998 6666666665554 34433
No 132
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=67.01 E-value=18 Score=21.63 Aligned_cols=57 Identities=11% Similarity=0.035 Sum_probs=33.7
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCC--cccccceEEEEeCCCC
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGE--LFGRSGYAIGLQKGSP 61 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~--~~~~~~~~ia~~kgs~ 61 (90)
+.+++...++..+.+|.--+++-.. .+..+... ..+..+.- ......++++.+++..
T Consensus 145 ~~~~~~~~~~~~v~~g~giailp~~-~~~~~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~ 203 (241)
T 3oxn_A 145 LRAYHLEAALAIVDTLPIIITVPAD-LAYLVAER-YDLVVKPLPFQFTPFDYSMIWHARCE 203 (241)
T ss_dssp EECSSTHHHHHHC--CCCEEEEEHH-HHHHHHHH-TTEEEECCSSCCCCCCEEEEEEGGGT
T ss_pred EECCcHHHHHHHHhCCCeEEEcHHH-HHHHhccc-CCceEeCCCCCCCcccEEEEEcCcCC
Confidence 4678889999999999966665443 33333332 34555532 2334567888888743
No 133
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=67.00 E-value=9.7 Score=26.17 Aligned_cols=79 Identities=8% Similarity=0.036 Sum_probs=47.1
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe--CCccc-ccceEEEEeCC----CC-----ChHHHHHHHHHhh
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA--GELFG-RSGYAIGLQKG----SP-----WADAVTLAILDFH 74 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~--~~~~~-~~~~~ia~~kg----s~-----l~~~vn~~l~~l~ 74 (90)
..++++.+|++|++||++...|.......+.....++ ++... .....+++++. +| +.+.+.++...+.
T Consensus 200 ~~~~~~~aL~~G~iDa~~~~eP~~~~a~~~g~g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~ 279 (429)
T 2i49_A 200 PPAETVQGMRNGTMDAFSTGDPWPYRIVTENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWID 279 (429)
T ss_dssp CHHHHHHHHHHTCCCEEEEETTHHHHHHHTTSCEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHcCCccEEEeccchHHHHHHCCCCEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHh
Confidence 5588999999999999999888877666654322222 22212 22346777764 33 4445555555555
Q ss_pred h---ccHHHHHHHH
Q psy17442 75 E---STVCYLFMAK 85 (90)
Q Consensus 75 ~---~G~~~~l~~k 85 (90)
+ ..+..++..+
T Consensus 280 ~~~n~~e~a~i~a~ 293 (429)
T 2i49_A 280 DPKNRPEVVQIVSG 293 (429)
T ss_dssp SGGGHHHHHHHHHS
T ss_pred CccCHHHHHHHhcc
Confidence 4 2344454443
No 134
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=66.56 E-value=8.2 Score=25.29 Aligned_cols=41 Identities=5% Similarity=-0.168 Sum_probs=29.0
Q ss_pred ccCChHHHHHHhhcCCceEEE-eehhHHhHHHh-c-CCCeEEeC
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFI-WDSSRLDFEAA-Q-DCELVTAG 44 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i-~d~~~~~~~~~-~-~~~l~~~~ 44 (90)
.+.+..+...+|.+|++|+.+ ...+.+..+.+ + .-++..++
T Consensus 71 ~f~~~~~~~~AL~~G~iD~~~~~~~~~l~~~~~~~~g~~l~~v~ 114 (295)
T 1p99_A 71 HFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALS 114 (295)
T ss_dssp ECSSTTSHHHHHHTTSSSEEEEEEHHHHHHHHHHCTTCCEEEEE
T ss_pred EeCChHHHHHHHHcCCCCEEccCCHHHHHHHHHhcCCCCEEEEE
Confidence 467888899999999999965 56666665543 3 34566554
No 135
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=66.30 E-value=3.8 Score=24.75 Aligned_cols=25 Identities=20% Similarity=0.031 Sum_probs=20.1
Q ss_pred ccCChHHHHHHhhcCCceEEEeehh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~ 28 (90)
...+..+.+..|.+|++|..|...+
T Consensus 61 ~~~~~~~~~~~L~~g~~Dl~i~~~~ 85 (238)
T 3onm_A 61 RVKRSPFIADMLSSGEVDLAITTAK 85 (238)
T ss_dssp EECCHHHHHHHHHHTSCSEEEECSC
T ss_pred EECCHHHHHHHHHCCCccEEEEecC
Confidence 3456778899999999999887654
No 136
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=66.28 E-value=22 Score=23.13 Aligned_cols=55 Identities=11% Similarity=-0.067 Sum_probs=34.4
Q ss_pred cCChHHHHHHhhcCCceEEE-eehh-----HH---------hHHH--hc----CCCeEEeCCcccccceEEEEeCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFI-WDSS-----RL---------DFEA--AQ----DCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i-~d~~-----~~---------~~~~--~~----~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
+.+..-.+.+|.+|.+|++. .-.. .+ ..+. ++ ...+..++.......||+++|+.
T Consensus 49 lg~~~~~~~al~~G~iDv~~~eytGt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~laV~~~ 124 (284)
T 3r6u_A 49 LGSNAVQQQALMNGEIDIAATRYTGDALTGTLRMEPEKDPDKALALTQREFKKRYDLKWYDSYGFDNTYAFTVSKE 124 (284)
T ss_dssp ECSHHHHHHHHHTTSCSEEEEEEHHHHHHHTTCCCCCCSHHHHHHHHHHHHHHHHCEEECCCCSCBCCEEEEEEHH
T ss_pred CCchHHHHHHHHcCCCCEEehhccchhHHHhcCCCCCCCHHHHHHHHHHHhHhhcCeEEeccCCcCCeEEEEEeHH
Confidence 33566789999999999999 3111 00 1111 11 11566676655566899999973
No 137
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=65.62 E-value=8.7 Score=25.14 Aligned_cols=57 Identities=14% Similarity=-0.119 Sum_probs=38.9
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCC
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPW 62 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l 62 (90)
+...+..+++.+|.+|.+|..+.+.+.-.....+ |.+.. ..+...+.+++++++.++
T Consensus 33 v~~~gS~~~~~~l~~g~~Di~~~~~~~~~~e~~~-~~l~~--~~~~~d~lvvvv~~~~~~ 89 (321)
T 1ixh_A 33 YQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQ-EGLFQ--FPTVIGGVVLAVNIPGLK 89 (321)
T ss_dssp EEECCHHHHHHHHHTTCSSEEEESSCCCHHHHHH-HTEEE--EEEEEEEEEEEECCTTCC
T ss_pred EecCCCHHHHHHHHcCCCcEEecccCCChhhHhh-CCCEE--eeeeeeeEEEEEeCCCCc
Confidence 4556889999999999999999887754433221 23322 245567788888886553
No 138
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=65.59 E-value=13 Score=24.81 Aligned_cols=57 Identities=12% Similarity=-0.020 Sum_probs=38.4
Q ss_pred cCChHHHHHHhhcCCceEEEee------hhHHhHH--HhcCCCeEEeCCcccccceEEEEeCCCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWD------SSRLDFE--AAQDCELVTAGELFGRSGYAIGLQKGSP 61 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d------~~~~~~~--~~~~~~l~~~~~~~~~~~~~ia~~kgs~ 61 (90)
.++..+++.+|.+|++|..+.. ..+...+ +.+..++.++++.+-+-.+.+..++|..
T Consensus 37 ~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~IvgE~~l~I~h~Ll~~~g~~ 101 (313)
T 3mwb_A 37 CTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPGVE 101 (313)
T ss_dssp ESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHTTSSSCCEEEEEEEEECCCEEEECTTCC
T ss_pred cCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHHhhCCCCeEEEEEEEEeeeEEEEcCCCCC
Confidence 5789999999999999865542 2222221 2223468899887777777777777643
No 139
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=65.09 E-value=24 Score=22.43 Aligned_cols=78 Identities=10% Similarity=-0.031 Sum_probs=45.8
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcc--------------------------cccceEEEEeCC
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELF--------------------------GRSGYAIGLQKG 59 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~ia~~kg 59 (90)
.+..+.+..+.+|++|+.+.-...+.. ..-.+..+++.. ....+++++.|+
T Consensus 188 ~~~~~~~~~v~~Ge~d~~i~~~s~a~~---~~~~~~~~P~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~i~k~ 264 (295)
T 3cij_A 188 SMEMELIHLVESGELDYFFIYKSVAKQ---HGFNFVELPVEIDLSSPDYAELYSKVKVVLANGKEVTGKPIVYGITIPKN 264 (295)
T ss_dssp SSTHHHHHHHHTTSCSEEEEEHHHHHH---TTCEEEECCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTT
T ss_pred ccHHHHHHHHhCCCCCEEEEEeehhhh---CCCCEEECchhhccCCccccccccceEEeccCCccccCCceEEEEEeecC
Confidence 456789999999999987765443322 111122222221 123578999999
Q ss_pred CCChHHHHHHHHHhhhccHHHHHHHHhc
Q psy17442 60 SPWADAVTLAILDFHESTVCYLFMAKVH 87 (90)
Q Consensus 60 s~l~~~vn~~l~~l~~~G~~~~l~~kW~ 87 (90)
++-.+...+.|.-|. +.+-+++..++.
T Consensus 265 a~~~~~A~~Fi~fl~-S~e~q~i~~~~g 291 (295)
T 3cij_A 265 AENRELAVEFVKLVI-SEEGQEILRELG 291 (295)
T ss_dssp CSCHHHHHHHHHHHH-SHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHh-ChhHHHHHHHcC
Confidence 876665555554444 444456666543
No 140
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=64.91 E-value=24 Score=22.44 Aligned_cols=78 Identities=8% Similarity=-0.034 Sum_probs=44.7
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcc--------------------------cccceEEEEeCC
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELF--------------------------GRSGYAIGLQKG 59 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~ia~~kg 59 (90)
.+..+.+..+.+|++|+.+.-...+... .-.+..+++.. ....+++++.|+
T Consensus 189 ~~~~~~~~~v~~Ge~d~~i~~~s~a~~~---~~~~~~~P~~~~~~~~~~~~~y~~v~~~~~~g~~~~~~~i~~~~~i~k~ 265 (296)
T 3cfx_A 189 SMEVELSSALETGEIDYLYIYRSVAEQH---GFEYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIPNN 265 (296)
T ss_dssp SSGGGGHHHHHTTSCSEEEEEHHHHHHH---TCEEECCCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTT
T ss_pred ccHHHHHHHHHcCCCCEEEeehhhHhhC---CCCEEECChhhcccCccccccccceeeeccCCccccCCceEEEEEeecC
Confidence 4566889999999999877654433221 11111122111 123578999999
Q ss_pred CCChHHHHHHHHHhhhccHHHHHHHHhc
Q psy17442 60 SPWADAVTLAILDFHESTVCYLFMAKVH 87 (90)
Q Consensus 60 s~l~~~vn~~l~~l~~~G~~~~l~~kW~ 87 (90)
++-.+.--+.|.-|. +.+-+++..++.
T Consensus 266 a~~~~~A~~Fi~fll-S~e~q~i~~~~g 292 (296)
T 3cfx_A 266 AENSELATEFVALLL-GETGQQIFIENG 292 (296)
T ss_dssp CSCHHHHHHHHHHHH-SHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHh-ChHHHHHHHHcC
Confidence 876655555554443 445566666553
No 141
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=63.65 E-value=19 Score=20.81 Aligned_cols=69 Identities=1% Similarity=-0.123 Sum_probs=42.4
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCC--cccccceEEEEeCCCCChHHHHHHHHHhh
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGE--LFGRSGYAIGLQKGSPWADAVTLAILDFH 74 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~--~~~~~~~~ia~~kgs~l~~~vn~~l~~l~ 74 (90)
+.+++...++..+.+|.--+++-...... + ....+..+.- ......++++.+++......+...+..++
T Consensus 137 ~~~~~~~~~~~~v~~g~gi~~~p~~~~~~-~--~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 207 (219)
T 3jv9_A 137 LQGSSINTIRHMVASGLAISVLPATALTE-N--DHMLFSIIPFEGTPPSRRVVLAYRRNFVRPKALSAMKAAIM 207 (219)
T ss_dssp CEESSHHHHHHHHHHTSCEEEEEGGGCCT-T--CTTTEEEECCSSSCCEEEEEEEEETTCSCHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHcCCcEEehhHHHHHh-c--cCCcEEEEecCCCCcceeEEEEEecCccccHHHHHHHHHHH
Confidence 56788899999999999666665544433 2 3345655533 22334677888888655544544444443
No 142
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=63.52 E-value=27 Score=22.46 Aligned_cols=68 Identities=7% Similarity=-0.185 Sum_probs=42.8
Q ss_pred HHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCc--ccccceEEEEeCCCCChHHHHHHHHHhhhc
Q psy17442 9 PSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGEL--FGRSGYAIGLQKGSPWADAVTLAILDFHES 76 (90)
Q Consensus 9 ~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~--~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~ 76 (90)
.+....+.+|++.+.+.-..........+.++..+-.. ......+++++|+++-.+.--+.|.-|...
T Consensus 195 ~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~p~eG~~~~~~~~~I~k~a~n~e~A~~fi~fllsp 264 (333)
T 4gl0_A 195 DEIKLLMADNEAGVAVTFSGEAAEMLSENEDLEYVIPKDGSNLWFDNMVIPKTAKNVDGAHKFINFMLKP 264 (333)
T ss_dssp TTHHHHTSCC-CCEEEEEHHHHHHHHHHCTTEEEECCSSCEEEEEEEEECBTTCSCHHHHHHHHHHHHSH
T ss_pred hhhhhhhhccchheehhhhHHHHHHHhhccccccccCCCCCccccceEEEEcCCCCHHHHHHHHHHhcCH
Confidence 35667889999988887766655555555555544211 112234789999998777777766655543
No 143
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=63.10 E-value=16 Score=22.43 Aligned_cols=55 Identities=13% Similarity=-0.049 Sum_probs=33.6
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCCh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWA 63 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l~ 63 (90)
..+..+.+..|.+|++|.++...+.... ....++.. ..+..+++.++++++.|+.
T Consensus 62 ~~~~~~~~~~l~~g~~Di~i~~~~~~~~--~~~~~~~~--~~l~~~~~~~v~~~~~pl~ 116 (290)
T 1twy_A 62 GVGSTAGISLLKKGVADIAMTSRYLTES--EAQNTLHT--FTLAFDGLAIVVNQANPVT 116 (290)
T ss_dssp ESCHHHHHHHHHTTSCSEEEESSCCCTT--TCCTTCEE--EEEEEEEEEEEECTTCCCC
T ss_pred ecCcHHHHHHHhcCCCcEEEecCCCchh--hhhcCceE--EEEEeeeEEEEECCCCCcc
Confidence 4567788999999999998876432110 00022222 1345667778888877653
No 144
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=63.06 E-value=20 Score=23.46 Aligned_cols=52 Identities=2% Similarity=-0.185 Sum_probs=31.1
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHH-HhcCCCeEEeCCcccccceEEEEeCC
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFE-AAQDCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~-~~~~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
..+|.+.+|++|.||+.....+.+... ...-.++..... ....+..+++.+.
T Consensus 169 ~~~Evy~ALq~G~vDg~~~~~~~~~~~~~~ev~ky~~~~~-~~~~~~~~~~n~~ 221 (312)
T 2xwv_A 169 AFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTN-HILNDQLYLVSNE 221 (312)
T ss_dssp CGGGHHHHHHTTSSSEEEEEHHHHHHTTGGGSCSEEECCC-CCEEEEEEEEEHH
T ss_pred CHHHHHHHHHcCCcceEeccHHHHhhcchhhccceEEecC-ccccceEEEEeHH
Confidence 457899999999999999987765221 111233333322 2233445667664
No 145
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=62.89 E-value=16 Score=22.05 Aligned_cols=76 Identities=9% Similarity=-0.057 Sum_probs=40.2
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe--CCc-ccccceEEEEeCCCCChHHHHHHHHHhhhccHHHHH
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA--GEL-FGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYLF 82 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~--~~~-~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~l 82 (90)
.+..+..+.+.+|.+++.+.....+. .......++ ... .....|++++.|++ .+...+ +.+...+.+-+++
T Consensus 150 ~~~~~~~~~~~~g~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~A~~-Fi~fl~s~e~q~~ 223 (237)
T 2hxw_A 150 PNSGSARKLFAQDQADAWITWIDWSK---SNPDIGTAVAIEKDLVVYRTFNVIAKEGA--SKETQD-FIAYLSSKEAKEI 223 (237)
T ss_dssp CCCTTC--CTTTTTCSEEEEEHHHHH---HSTTSSEEEECCTTTCCEEEEEEEECTTC--CHHHHH-HHHHTTSHHHHHH
T ss_pred CCHHHHHHHHHcCCeeEEEEechhhh---cCCCceEEEecCCceeEEeeeeEEEccCC--hHHHHH-HHHHHcCHHHHHH
Confidence 34455566688888898776554332 112222332 222 23455788999987 444444 3444445566666
Q ss_pred HHHhc
Q psy17442 83 MAKVH 87 (90)
Q Consensus 83 ~~kW~ 87 (90)
..++.
T Consensus 224 ~~~~g 228 (237)
T 2hxw_A 224 FKKYG 228 (237)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 55543
No 146
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=62.14 E-value=5.3 Score=25.49 Aligned_cols=57 Identities=9% Similarity=-0.093 Sum_probs=36.7
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCC-eEEeCCcccccceEEEEeCCCCC
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCE-LVTAGELFGRSGYAIGLQKGSPW 62 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~-l~~~~~~~~~~~~~ia~~kgs~l 62 (90)
+...+..+++.+|.+|++|..+.+.+.-. +..+. -.+....+...+..+++++++|+
T Consensus 36 v~~~gS~~gi~~l~~g~~Dig~~~~~~~~---~~~~~~~~l~~~~ia~d~lvvvv~~~~~~ 93 (265)
T 4exl_A 36 VQGGGSGTGLSQVQSGAVDIGNSDVFAEE---KDGIDASALVDHKVAVAGLALIVNKEVDV 93 (265)
T ss_dssp EEEECHHHHHHHHHTTSSSEEEESSCGGG---STTCCGGGEECCEEEEEEEEEEECTTCCC
T ss_pred EeeCCcHHHHHHHHcCCCccccccCCcch---hhcccccCceEeeEEEEEEEEEECCCCcc
Confidence 34567889999999999999888643211 11111 11233445566788888888775
No 147
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=60.76 E-value=8.5 Score=23.90 Aligned_cols=23 Identities=4% Similarity=-0.315 Sum_probs=18.1
Q ss_pred CChHHHHHHhhcCCceEEEeehh
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~ 28 (90)
.+..+.+..|.+|++|..|...+
T Consensus 127 ~~~~~~~~~l~~g~~Dl~i~~~~ 149 (294)
T 1ixc_A 127 MTKDEQVEGLLAGTIHVGFSRFF 149 (294)
T ss_dssp CCHHHHHHHHHHTSCSEEEESCC
T ss_pred CCHHHHHHHHHCCCccEEEEecC
Confidence 34667889999999999887543
No 148
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=59.92 E-value=9.9 Score=25.31 Aligned_cols=53 Identities=9% Similarity=-0.076 Sum_probs=31.4
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHh--cCCCeEEeCC-cccccceEEEEeCC
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAA--QDCELVTAGE-LFGRSGYAIGLQKG 59 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~--~~~~l~~~~~-~~~~~~~~ia~~kg 59 (90)
..+|.+.+|++|.||+.....+......+ .-.++..... -.....+.+++++.
T Consensus 197 ~~~e~y~ALq~G~VDg~~~~~p~~~~~~~~~ev~k~~~~~~~~~~~~~~~~v~n~~ 252 (365)
T 2hzl_A 197 AGGDIYPALEKGTIDATEWVGPYDDEKLGFFKVAPYYYYPGWWEGGPTVHFMFNKS 252 (365)
T ss_dssp CTTSHHHHHHHTSCSEECCSCHHHHHHHTGGGTCCEEEECBTTCSSCEEEEEEEHH
T ss_pred CHHHHHHHHhCCCcceeeccCccchhhcChHHhhheeeccCccccccceEEEEcHH
Confidence 45688999999999999876665432222 1234333322 11124456777774
No 149
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=59.60 E-value=18 Score=23.35 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=38.2
Q ss_pred hHHHHHHhhcCCceEEEeehhHHhHHHhcCC---CeEEeCCcccccce--EEEEeCCCCChHHHHHHHHHhhhccHHHHH
Q psy17442 8 SPSTVVRHGTKKLMAFIWDSSRLDFEAAQDC---ELVTAGELFGRSGY--AIGLQKGSPWADAVTLAILDFHESTVCYLF 82 (90)
Q Consensus 8 ~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~---~l~~~~~~~~~~~~--~ia~~kgs~l~~~vn~~l~~l~~~G~~~~l 82 (90)
.++...+|..|++||.+.....+... .-++ .+.+ ... ..+| .|++|+++.=.+++-..+.-+ +|.+.++.
T Consensus 158 aaql~~al~dg~vDaavin~n~a~~a-gl~p~~dal~~-E~~--~~~y~n~i~vr~~~~~~~~~k~lv~~~-~s~~v~~~ 232 (246)
T 4ef1_A 158 PAIMTTLYDNEEGAAVLINSNFAVDQ-GLNPKKDAIAL-EKE--SSPYANIIAVRKEDENNENVKKLVKVL-RSKEVQDW 232 (246)
T ss_dssp GGGHHHHHHTTCSSEEEECHHHHHHT-TCCHHHHCSEE-CSC--CGGGCEEEEEEGGGTTCHHHHHHHHHH-HSHHHHHH
T ss_pred HHHHHHHhccccccEEEEechHHHHc-CCCCccCceEE-cCC--CCCeEEEEEEeccccCCHHHHHHHHHH-cCHHHHHH
Confidence 46677889999999988876554322 1121 1222 221 2355 588888743334444433333 35555544
Q ss_pred HH
Q psy17442 83 MA 84 (90)
Q Consensus 83 ~~ 84 (90)
.+
T Consensus 233 i~ 234 (246)
T 4ef1_A 233 IT 234 (246)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 150
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=59.18 E-value=23 Score=20.36 Aligned_cols=68 Identities=7% Similarity=-0.107 Sum_probs=39.1
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCccc--ccceEEEEeCCCCChHHHHHHHH
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFG--RSGYAIGLQKGSPWADAVTLAIL 71 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~--~~~~~ia~~kgs~l~~~vn~~l~ 71 (90)
+.+++...++..+.+|.--+++-.. .+........-..+...... ...+.++.+++.+....+...+.
T Consensus 132 ~~~~~~~~~~~~v~~g~Gi~~lp~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 201 (213)
T 3hhf_B 132 FTASSGEILRSLCLSGCGIVCLSDF-LVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLD 201 (213)
T ss_dssp SEESSHHHHHHHHHTTSCBEEEEHH-HHHHHHHHTSSEEECTTTBCCCCEEEEEEEEGGGGGCHHHHHHHH
T ss_pred eeeCCHHHHHHHHHcCCcEEEeeHH-HhhHHHhcCCcEEecCCCCCCceeeEEEEEcCCCCCChHHHHHHH
Confidence 5678889999999999966665544 33333333222223333222 35778888887544444444333
No 151
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=57.93 E-value=21 Score=23.03 Aligned_cols=51 Identities=10% Similarity=-0.074 Sum_probs=28.8
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHh--cCCCeEEeCCcccccceEEEEeCC
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAA--QDCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~--~~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
..+|.+.+|++|.|||.....+... ..+ ...++..... ....+..+.+.+.
T Consensus 163 ~~~E~y~ALq~G~vDg~~~~~~~~~-~~~~~ev~ky~~~~~-~~~~~~~~~~n~~ 215 (301)
T 2pfz_A 163 QQAELAQAMATGVIDSYMSSGSTGF-DTKTYEYIKKFYDTE-AWLPKNAVLVNKK 215 (301)
T ss_dssp CGGGHHHHHHTTSCSEEEECHHHHH-HTTGGGTCCEEECCC-CCCCEEEEEEEHH
T ss_pred CHHHHHHHHhcCeeeEEecCccccc-cccHHHHhhhheecc-cccceeEEEEcHH
Confidence 4678999999999999965433322 112 1233333221 2234455777664
No 152
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=57.57 E-value=21 Score=23.32 Aligned_cols=55 Identities=9% Similarity=-0.087 Sum_probs=39.0
Q ss_pred ccCChHHHHHHhhcCCceEEEeeh------h---HHhHHHhcCCCeEEeCCcccccceEEEEeCCC
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDS------S---RLDFEAAQDCELVTAGELFGRSGYAIGLQKGS 60 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~------~---~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs 60 (90)
-.++..+++.+|.+|++|..+..- . ++..+.. .++.++++..-+-.+.+..++|.
T Consensus 33 ~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~--~~l~I~gE~~l~I~h~Ll~~~g~ 96 (267)
T 2qmw_A 33 PKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQ--QDVFAHGEIRLDINFALYGNGTD 96 (267)
T ss_dssp EESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHT--TSSEEEEEEEEECCEEEECCSSC
T ss_pred EcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhc--CCcEEEEEEEEEeeeEEEecCCC
Confidence 357899999999999998876531 1 2222222 35889988877777887777764
No 153
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=55.51 E-value=21 Score=23.19 Aligned_cols=51 Identities=8% Similarity=-0.201 Sum_probs=30.6
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHh--cCCCeEEeCCcccccceEEEEeCC
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAA--QDCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~--~~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
..+|.+.+|++|.||+.....+.... .+ ...++..... ....++.+++.+.
T Consensus 166 ~~~Evy~ALq~G~VDg~~~~~~~~~~-~~~~ev~~y~~~~~-~~~~~~~~~~n~~ 218 (316)
T 2vpn_A 166 PWGEVYGGLQTGIIDGQENPIFWIES-GGLYEVSPNLTFTS-HGWFTTAMMANQD 218 (316)
T ss_dssp CGGGHHHHHHHTSCSEEEEEHHHHHH-TTGGGTCCEEEECC-CCEEEEEEEEEHH
T ss_pred CHHHHHHHHHcCCcceeeCCHHHHHh-cCHHHhhhhheecc-ccccceEEEEcHH
Confidence 45789999999999999987554321 11 2233333222 2233556777775
No 154
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=52.48 E-value=37 Score=22.86 Aligned_cols=55 Identities=13% Similarity=-0.015 Sum_probs=36.6
Q ss_pred cCChHHHHHHhhcCCceEEEee------hh---HHhHHHhcCCCeEEeCCcccccceEEEEeCCCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWD------SS---RLDFEAAQDCELVTAGELFGRSGYAIGLQKGSP 61 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d------~~---~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~ 61 (90)
++++.+++.+|.+|+ |..+.. .. ++..+ .+..++.++++.+-+-.+.+...+|..
T Consensus 43 ~~s~~~vf~aV~~g~-d~gVVPIENS~eG~V~~tlDlL-~~~~~l~I~gE~~l~I~h~Ll~~~g~~ 106 (329)
T 3luy_A 43 MDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDAL-IDAKDLVGFARVGVNVEFDAYVAQGAD 106 (329)
T ss_dssp ESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHH-HTCSSCEEEEEEEEECCCEEEEETTCC
T ss_pred CCCHHHHHHHHHcCC-CEEEEEEcccCCCchHHHHHHh-hccCCcEEEEEEEEEeeeeeecCCCCC
Confidence 578999999999999 876642 11 22222 233468888887766667766666643
No 155
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=52.04 E-value=30 Score=22.96 Aligned_cols=56 Identities=9% Similarity=-0.078 Sum_probs=37.2
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCC
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGS 60 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs 60 (90)
+...+..+++.+|.+|.+|..+.+.+.-.....+..++.. ..+...+.+++++++.
T Consensus 59 v~~~gS~~g~~~l~~g~~Di~~~~~~~~~~e~~~~~~l~~--~pi~~d~lvvvvn~~~ 114 (350)
T 1pc3_A 59 AQGTGSGAGIAQAAAGTVNIGASDAYLSEGDMAAHKGLMN--IALAISAQQVNYNLPG 114 (350)
T ss_dssp CCBCCHHHHHHHHHTTSCSEEEESSCCCHHHHHHSTTEEE--EEEEEEEEEEEECCTT
T ss_pred EecCCCHHHHHHHHcCCCcEEeccCCCCHHHHHhcCCCEE--eeEEeeeEEEEEeCCc
Confidence 4556789999999999999999887754433222112322 2345667778887754
No 156
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=51.96 E-value=38 Score=20.63 Aligned_cols=70 Identities=11% Similarity=-0.088 Sum_probs=41.5
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCC--cccccceEEEEeCCCCChHHHHHHHHHhh
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGE--LFGRSGYAIGLQKGSPWADAVTLAILDFH 74 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~--~~~~~~~~ia~~kgs~l~~~vn~~l~~l~ 74 (90)
+.+++...+...+.+|.--+++-. ..+....... .+..+.. ......++++.+++.+....+...+..++
T Consensus 215 ~~~~~~~~~~~~v~~g~Giailp~-~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 286 (291)
T 3szp_A 215 FQASALNVVRSACSEGLGITLMPD-VMLREFLEDG-SLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 286 (291)
T ss_dssp EEESSHHHHHHHHHTTCCEEEEEG-GGTHHHHHTT-TSEECCTTCBCCCEEEEEEECCGGGCCHHHHHHHHHHH
T ss_pred eEECcHHHHHHHHHcCCcEEEccH-HHHHHHHhCC-CeEEecCCccCCCCcEEEEECCCCCCCHHHHHHHHHHH
Confidence 467788889999999996666544 4444333332 3333322 22355677888888655555555554443
No 157
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=51.26 E-value=7.6 Score=25.88 Aligned_cols=24 Identities=4% Similarity=-0.208 Sum_probs=21.1
Q ss_pred ChHHHHHHhhcCCceEEEeehhHH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRL 30 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~ 30 (90)
..+|.+.+|++|.||+.....+..
T Consensus 199 ~~~e~~~ALq~G~VDg~~~~~~~~ 222 (361)
T 2zzv_A 199 PGGEVYPALERGVIDAADFVGPAV 222 (361)
T ss_dssp CGGGHHHHHHTTSCSEEECSCHHH
T ss_pred ChHHHHHHHHcCCcceeecCCcch
Confidence 567899999999999999887776
No 158
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=50.78 E-value=42 Score=20.85 Aligned_cols=68 Identities=9% Similarity=-0.110 Sum_probs=37.5
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCC--cccccceEEEEeCCCCChHHHHHHHHH
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGE--LFGRSGYAIGLQKGSPWADAVTLAILD 72 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~--~~~~~~~~ia~~kgs~l~~~vn~~l~~ 72 (90)
+.+++...++..+.+|.--+++-.. .+...... ..+..+.. ......++++.+++.+....+...+..
T Consensus 231 ~~~~~~~~~~~~v~~g~Gia~lp~~-~~~~~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 300 (310)
T 2esn_A 231 VQLPTVLAALFLAGSTDFLLTAPRH-AARALAEA-AGLALYPAPFDIPPYVLRLYSHVQHVGRDAHAWMIGQ 300 (310)
T ss_dssp EEESCHHHHHHHHHTSSCEEEEEHH-HHHHHHHH-HTEEEECCSSCCCCEEEEEEEECC--CCHHHHHHHHH
T ss_pred EeCCCHHHHHHHHhcCCeEEEcHHH-HHHHHhhc-CCceEecCCCCCCCeeEEEEEeCcccCCHHHHHHHHH
Confidence 4577888889999999865665443 33332222 23444432 223456778888876554444444333
No 159
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=50.59 E-value=37 Score=20.06 Aligned_cols=70 Identities=13% Similarity=0.011 Sum_probs=42.3
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe-CC-cccccceEEEEeCCCCChHHHHHHHHHhh
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA-GE-LFGRSGYAIGLQKGSPWADAVTLAILDFH 74 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~-~~-~~~~~~~~ia~~kgs~l~~~vn~~l~~l~ 74 (90)
+.+++...++.++.+|.--+++....+ ...... ..+..+ .. ......+.++.+++......+...+..++
T Consensus 140 ~~~~~~~~~~~~v~~G~Gia~lp~~~~-~~~l~~-g~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 211 (218)
T 2qsx_A 140 VGFEHFYLACEAVRMEKGLALLPDFMA-QFSILR-GDIQHIGNLKLHSGYGYYVVIPNFRLTSRKVALFHDWLK 211 (218)
T ss_dssp BCCSSHHHHHHHHHTTCCBEEEEHHHH-HHHHHT-TSEEEEEEEEEEEEEEEEEECCTTCTTCHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHhCCCEEEecHHHH-HHHHHC-CCccccCccccCCCceEEEEeccccCCCHHHHHHHHHHH
Confidence 467888999999999996666665433 333332 334433 21 12234677888888766666665555443
No 160
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=50.56 E-value=39 Score=21.93 Aligned_cols=55 Identities=11% Similarity=-0.161 Sum_probs=33.6
Q ss_pred cCChHHHHHHhhcCCceEEEee-hh-H----H---------hHHH--hc----CCCeEEeCCcccccceEEEEeCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWD-SS-R----L---------DFEA--AQ----DCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d-~~-~----~---------~~~~--~~----~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
+.+..-.+.+|.+|.+|++..+ .. . + .++. ++ .-.+..++.......||+++|+.
T Consensus 48 lg~~~~~~~al~~G~iDv~~~eytGt~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~n~~~laV~~~ 123 (282)
T 3o66_A 48 LGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQGFKKKFDQTFFDSYGFANTYAFMVTKE 123 (282)
T ss_dssp ESSHHHHHHHHHHTSCSEEEEEEHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHHHSEEECCCCSCBCCEEEEECHH
T ss_pred CCCcHHHHHHHHcCCCCEeehhccchhhHhhcCCCCCCCHHHHHHHHHHHhhhccCeEEeccCCcCCeEEEEEeHH
Confidence 3456678999999999999922 11 1 1 1111 11 11456666554556899999873
No 161
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=50.41 E-value=48 Score=21.33 Aligned_cols=69 Identities=12% Similarity=-0.127 Sum_probs=39.3
Q ss_pred hHHHHHHhhcCCceEEEeehhHHhH--HHhcCCCeEEeCCc---ccccceEEEEeCCCCChHHHHHHHHHhhhc
Q psy17442 8 SPSTVVRHGTKKLMAFIWDSSRLDF--EAAQDCELVTAGEL---FGRSGYAIGLQKGSPWADAVTLAILDFHES 76 (90)
Q Consensus 8 ~~~~~~~l~~G~ida~i~d~~~~~~--~~~~~~~l~~~~~~---~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~ 76 (90)
..++...+.+|++.+.+.-...... ......++.++-+. ......+++++++++-.+..-+.|.-|...
T Consensus 209 ~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~I~~~s~~~~aA~~Fi~~l~s~ 282 (343)
T 2v84_A 209 SDGYAKSFASGDFVVAHGFAEAFFAETPEAMHEHIDFFIPQDVASPVYVDSFCIPKGARNRDLAHAFINFFLEP 282 (343)
T ss_dssp SSSHHHHHHHTSCSEEEECHHHHHHHSCGGGGGGEEEECCTTTTCEEEEEEEBEETTCSCHHHHHHHHHHHTSH
T ss_pred chHHHHHHhcCCEEEEEEecHHHHHHHHHhcCCCeeEEeeCccCcceeeeeeEEECCCCCHHHHHHHHHHHcCH
Confidence 3457778899998887754433322 22222344433111 112235788999988766666666666543
No 162
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=49.80 E-value=42 Score=20.49 Aligned_cols=67 Identities=3% Similarity=-0.183 Sum_probs=38.9
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCC--cccccceEEEEeCCCCChHHHHHHHH
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGE--LFGRSGYAIGLQKGSPWADAVTLAIL 71 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~--~~~~~~~~ia~~kgs~l~~~vn~~l~ 71 (90)
+.+++...++..+.+|.--+++-. ..+....... .+..+.. ......+.++.+++.+....+...+.
T Consensus 217 ~~~~~~~~~~~~v~~g~Gi~~lp~-~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~ 285 (300)
T 3mz1_A 217 MAANESTTYLAAARAGLGVIQAPL-FMVREDLRNG-TMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFAD 285 (300)
T ss_dssp EEESSHHHHHHHHHTTCCBEEEEH-HHHHHHHHHT-SEEECCTTCBCCCEEEEEEECTTCCCCHHHHHHHH
T ss_pred EEECCHHHHHHHHHhCCCEEeccH-HHHHHHHhCC-CeEEeCCCcCCCCccEEEEEcCcccCcHHHHHHHH
Confidence 457788889999999986555544 3333333332 3444422 23345677888887554444444333
No 163
>3tpa_A Heme-binding protein A; glutathione binding protein, SBP; 2.00A {Haemophilus parasuis 29755} SCOP: c.94.1.0
Probab=48.94 E-value=11 Score=26.38 Aligned_cols=54 Identities=9% Similarity=-0.055 Sum_probs=30.3
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
+++....+.+|++|++|.+....+.....++++..+.+.... ....+.+.+.-.
T Consensus 226 ~~d~~~~~~al~~GevD~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~N~~ 279 (521)
T 3tpa_A 226 TPDAGTRYAKLKAGECDVIDFPNISDIAQMKKDPQINLLERE-GLNLAYIGLNTT 279 (521)
T ss_dssp CCCHHHHHHHHHTTSCSEESSCCHHHHHHHTTCTTEEEEEEE-CSEEEEEEECTT
T ss_pred eCCHHHHHHHHHcCCCCEEcCCCHHHHHHHhcCCCeEEEecC-CceEEEEEecCC
Confidence 467778899999999998743322222223344556554221 122334666554
No 164
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=48.77 E-value=58 Score=21.82 Aligned_cols=68 Identities=7% Similarity=-0.163 Sum_probs=42.9
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhc---CCCeEEeC-C----ccc---------ccceEEEEeCCCCChHHHHHH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQ---DCELVTAG-E----LFG---------RSGYAIGLQKGSPWADAVTLA 69 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~---~~~l~~~~-~----~~~---------~~~~~ia~~kgs~l~~~vn~~ 69 (90)
++.-|+.-|.+|..|+.+....++...... ..++.++= . ++. ....+|+.+++..-.+.|-..
T Consensus 192 G~~GA~rCL~eg~gDVAFv~~~~v~~~~~~~~~~~dy~lLC~dg~~~pv~~~~~C~la~vP~~avv~r~~~~~~~~i~~~ 271 (334)
T 1h45_A 192 SYSGAFKCLRDGAGDVAFIGESTVFEDLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNL 271 (334)
T ss_dssp HHHHHHHHHHTTSCSEEEEETTHHHHHCCCHHHHTTEEEEETTTEEEEGGGGGGSCSEEEECCEEEEESSSCCHHHHHHH
T ss_pred CchHHHHHHHhCCCcEEEEecchhhhhhcccCCccceEEECCCCCccCcCCCccceecccCCceEEEcCCCChHHHHHHH
Confidence 367899999999999988887777543311 13444431 0 111 334578888875445667777
Q ss_pred HHHhh
Q psy17442 70 ILDFH 74 (90)
Q Consensus 70 l~~l~ 74 (90)
|.+++
T Consensus 272 l~~~~ 276 (334)
T 1h45_A 272 LRQAQ 276 (334)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76665
No 165
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A
Probab=48.43 E-value=73 Score=22.87 Aligned_cols=76 Identities=7% Similarity=-0.117 Sum_probs=45.6
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCc-c-------cccceEEEEeCCCCChHHHHHHHHHhhhccH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGEL-F-------GRSGYAIGLQKGSPWADAVTLAILDFHESTV 78 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~-~-------~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~ 78 (90)
+..++...+.+|++-.++...-.+..+...+.++.++.-+ . ...+.+++++++|+-.+.--+.|..+.-+.+
T Consensus 209 ~~~~~~~~F~~Gk~am~~~g~w~~~~~~~~~~~~gv~~lP~~~g~~~~~~~g~~~~~I~~~Skn~eaA~~Fl~~fl~s~E 288 (637)
T 4dxb_A 209 DYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDE 288 (637)
T ss_dssp CHHHHHHHHHTTCCSEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHHHHHHHHHHTTSSHH
T ss_pred ChHHHHHHHHcCCEEEEEeCHHHHHHHHhcCCCeEEEEcCCCCCCCCceEeeeeEEEEECCCCCHHHHHHHHHHHhCCHH
Confidence 4567788899999776665444443333334555444211 1 1123568999999887777777765555554
Q ss_pred HHHH
Q psy17442 79 CYLF 82 (90)
Q Consensus 79 ~~~l 82 (90)
-.+.
T Consensus 289 ~q~~ 292 (637)
T 4dxb_A 289 GLEA 292 (637)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 166
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=47.40 E-value=55 Score=21.16 Aligned_cols=70 Identities=7% Similarity=-0.199 Sum_probs=41.5
Q ss_pred CChHHHHHHhhcCCceEEEee-hhHHhHHHhcCCCeEEeCCc--ccccceEEEEeCCCCChHHHHHHHHHhhh
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWD-SSRLDFEAAQDCELVTAGEL--FGRSGYAIGLQKGSPWADAVTLAILDFHE 75 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d-~~~~~~~~~~~~~l~~~~~~--~~~~~~~ia~~kgs~l~~~vn~~l~~l~~ 75 (90)
.+..+....+.+|++...+.- ............++.++-+. ......+++++|+++-.+..-+.|.-|..
T Consensus 214 ~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~I~k~s~~~eaA~~Fi~fl~s 286 (355)
T 3c9h_A 214 STSSAILERVSDGRFVLGYNILGSYAADWASRHPDVGIVLPKDYTVVMSRIGLVPEAAANPELGRRYLEFFMS 286 (355)
T ss_dssp SCHHHHHHHHHTTSCSEEEEEEHHHHHHHHHHCTTEEEECCSSCEEEECCEEEEETTBSCHHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHCCCeEEEEecchhHHHHHHhcCCCeeEEecCCCceeeeeEEEEECCCCCHHHHHHHHHHHcC
Confidence 456788899999998887743 33332222234455544211 11224578999998876666666655543
No 167
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} SCOP: c.94.1.1
Probab=45.61 E-value=14 Score=25.70 Aligned_cols=54 Identities=6% Similarity=-0.182 Sum_probs=29.4
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
+.+....+.+|++|++|.+..-.+.....++++.++.+.... ....+.+.+.-.
T Consensus 220 i~d~~~~~~al~~GevD~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~N~~ 273 (509)
T 1uqw_A 220 VADNNTRAAMLQTGEAQFAFPIPYEQATLLEKNKNIELMASP-SIMQRYISMNVT 273 (509)
T ss_dssp CCCHHHHHHHHHHTSCSEECSCCHHHHHHHHHCTTEEEEEEE-EEEEEEEEECTT
T ss_pred cCCHHHHHHHHHcCCCCEEcCCCHHHHHHHHcCCCeEEEEcC-CCcEEEEEEeCC
Confidence 566778899999999998632222222223334455543211 223345666544
No 168
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=44.49 E-value=37 Score=21.19 Aligned_cols=69 Identities=9% Similarity=-0.105 Sum_probs=37.2
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCC--cccccceEEEEeCCCCChHHHHHHHHHh
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGE--LFGRSGYAIGLQKGSPWADAVTLAILDF 73 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~--~~~~~~~~ia~~kgs~l~~~vn~~l~~l 73 (90)
+.+++...+...+.+|.--+++-. ..+.... ....+..+.. .....++.++.+++.+....+...+..+
T Consensus 221 ~~~~~~~~~~~~v~~g~gia~lp~-~~~~~~~-~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 291 (305)
T 3fxq_A 221 LVCESFLALPGVVAHSDLLTTMPR-TLYERNA-FKDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWI 291 (305)
T ss_dssp EEECCTTTHHHHHHTSSCEEEEEH-HHHHSST-TGGGEEECCCSSCCCCCEEEEEEETTSCCCHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHhCCEEEEeeH-HHHhhhh-hcCCEEEeeCCCCCCCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 345677778888888875444433 2222111 1234555532 2234567888898865544444444433
No 169
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=43.26 E-value=36 Score=22.98 Aligned_cols=55 Identities=11% Similarity=-0.099 Sum_probs=33.3
Q ss_pred cCChHHHHHHhhcCC----ceEEEeehh--HHhHHH---h-cCCCeEEeCCcccccceEEEEeCCC
Q psy17442 5 VKFSPSTVVRHGTKK----LMAFIWDSS--RLDFEA---A-QDCELVTAGELFGRSGYAIGLQKGS 60 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~----ida~i~d~~--~~~~~~---~-~~~~l~~~~~~~~~~~~~ia~~kgs 60 (90)
+.+.++.+.+|.+|+ +|+.+...+ .+.... . +..++.++... ...+.+|.+++++
T Consensus 70 ~~~~~~~~~al~~G~~~~giD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~i~v~~~~ 134 (417)
T 2g29_A 70 QASWGTTRDNLVLGSASGGIDGAHILTPMPYLITMGTVTDGKPTPMYILARL-NVNGQGIQLGNNY 134 (417)
T ss_dssp CSCHHHHHHHHHHCGGGTSCSEEEEETHHHHHHHHCTTSSSCCCCEEEEEEC-CBSCEEEEECGGG
T ss_pred cCCHHHHHHHHHCCCCcCCcCeEeecchHHHHHHhCcccCCCCCCEEEEEEe-ccCCeEEEEecch
Confidence 457788999999999 999887433 222221 1 23455555322 3345677777764
No 170
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A* 3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A* 3qim_A
Probab=42.67 E-value=80 Score=21.72 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=17.0
Q ss_pred cCChHHHHHHhhcCCceEEE
Q psy17442 5 VKFSPSTVVRHGTKKLMAFI 24 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i 24 (90)
+.+....+.+|++|++|.+.
T Consensus 199 i~d~~~~~~al~~GevD~~~ 218 (502)
T 2noo_A 199 IPDPTTRAVAFETGDIDLLY 218 (502)
T ss_dssp CCSHHHHHHHHHHSSCCEEE
T ss_pred cCCHHHHHHHHHcCCCCEec
Confidence 46777889999999999875
No 171
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=42.59 E-value=81 Score=21.76 Aligned_cols=54 Identities=0% Similarity=-0.176 Sum_probs=30.8
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
+.+....+.+|++|++|.+..-.+.....++++..+.+... .....+.+.+.-.
T Consensus 196 ~~d~~~~~~al~~GeiD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~N~~ 249 (496)
T 3t66_A 196 NEDASARSLALESGQADIVYRPEVESIETLQANEGIMVEAT-ETFRTHNLTMNLD 249 (496)
T ss_dssp CCCHHHHHHHHHTTSCSEEESCCTTTHHHHHHSTTEEEEEE-ECSEEEEEEECTT
T ss_pred cCCHHHHHHHHHcCCCCEecCCCHHHHHHHhcCCCcEEEec-CCcceEEEEecCC
Confidence 56778899999999999875322222222333445555421 1223455777554
No 172
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*
Probab=42.42 E-value=63 Score=20.44 Aligned_cols=67 Identities=1% Similarity=-0.261 Sum_probs=38.8
Q ss_pred HHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe-CC-cccccceEEEEeCCCCChHHHHHHHHHhhhc
Q psy17442 10 STVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA-GE-LFGRSGYAIGLQKGSPWADAVTLAILDFHES 76 (90)
Q Consensus 10 ~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~-~~-~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~ 76 (90)
+....+.+|++.+.+.-............++.++ +. .......+++++++++-.+..-+.|.-|...
T Consensus 190 ~~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~ 258 (325)
T 1pot_A 190 NPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRP 258 (325)
T ss_dssp CTHHHHHTTSCSEEEEEHHHHHHHHTTSCCEEEECCTTCCEEEEEEEBCBTTCTTHHHHHHHHHHHHSH
T ss_pred hHhHHHhcCCEEEEEeecHHHHHHhhcCCCeEEEECCCcceEEEEEEEEECCCCCHHHHHHHHHHHhCH
Confidence 5677889999888775433333333333455443 21 1112245688999988766666666555543
No 173
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=41.78 E-value=18 Score=22.48 Aligned_cols=25 Identities=12% Similarity=-0.082 Sum_probs=19.9
Q ss_pred ChHHHHHHhhcCCceEEEee-hhHHh
Q psy17442 7 FSPSTVVRHGTKKLMAFIWD-SSRLD 31 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d-~~~~~ 31 (90)
..+++..+|.+|++||.+.- .|.+.
T Consensus 125 ~~~~~~~al~~G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 125 RYDRILPMVAQGEVEAGLIIHESRFT 150 (272)
T ss_dssp CGGGHHHHHHTTSSSEEEECTTHHHH
T ss_pred ChHHHHHHHHCCCCCEEEEecchhhh
Confidence 44588999999999998875 66655
No 174
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=41.67 E-value=21 Score=22.55 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=18.7
Q ss_pred cccCChHHHHHHhhcCCceEEEee
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWD 26 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d 26 (90)
+.+++.++++.+|++|+.-.++.|
T Consensus 2 ~~~~~ie~Ai~~lr~G~~Viv~Dd 25 (206)
T 3mio_A 2 TRLDSVERAVADIAAGKAVIVIDD 25 (206)
T ss_dssp CCCCCHHHHHHHHHTTCCEEEESS
T ss_pred CCchhHHHHHHHHHCCCeEEEEeC
Confidence 467899999999999995444443
No 175
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=41.58 E-value=64 Score=20.30 Aligned_cols=75 Identities=4% Similarity=-0.034 Sum_probs=36.3
Q ss_pred HHHHHHhhcCCceEEEeehhHHhHHHhcCC--CeEEeCCcccccceEEEEeCCCCChHHHHHHHHHhhhccHHHHHHHHh
Q psy17442 9 PSTVVRHGTKKLMAFIWDSSRLDFEAAQDC--ELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYLFMAKV 86 (90)
Q Consensus 9 ~~~~~~l~~G~ida~i~d~~~~~~~~~~~~--~l~~~~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~l~~kW 86 (90)
++...+| |++||.+...+.+... ..++ ..........+....++++++..=.+.+-+.+.-++.+..-+-+.++|
T Consensus 156 ~~~~~al--~~VDaa~i~~~~a~~a-gl~~~~~~l~~e~~~~~~~nviv~r~~~~~~~~vk~l~~a~~s~~v~~~i~~~~ 232 (241)
T 1xs5_A 156 ALLPRVF--DQVDGAVINGNYAIMA-GLSARRDGLAVEPDASAYANVLVVKRGNEADARVQAVLRALCGGRVRTYLKERY 232 (241)
T ss_dssp GGHHHHG--GGSSEEEECHHHHHHT-TCCTTTTCSEECSCGGGGCEEEEEETTCTTCHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred HHHHHhh--hccCEEEECcHHHHHc-CCCcccceEEEcCCCCceEEEEEEECCccChHHHHHHHHHHCCHHHHHHHHHhc
Confidence 4455555 6899998877654321 1121 122222222222235788887433345555444444333333444443
No 176
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=41.28 E-value=52 Score=19.15 Aligned_cols=81 Identities=4% Similarity=-0.178 Sum_probs=44.5
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCe-EEeCCcc-cccceEEEEeCCCCChHHHHHHHHHhhhccHHHHH
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCEL-VTAGELF-GRSGYAIGLQKGSPWADAVTLAILDFHESTVCYLF 82 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l-~~~~~~~-~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~l 82 (90)
..+..+....+.+|.+++.+.....+.......... ..+.... ....+.+++.|+++..+.....+.-+ .+.+-+++
T Consensus 143 ~~~~~~~~~~v~~G~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~a~~fi~~l-~s~~~q~~ 221 (231)
T 1atg_A 143 ANSVGQAHSQTASGAADLGFVALAQIIQAAAKIPGSHWFPPANYYEPIVQQAVITKSTAEKANAEQFMSWM-KGPKAVAI 221 (231)
T ss_dssp ESSHHHHHHHHHTTSSSEEEEEGGGTCCTTSCCSSEEECCCGGGSCCCEEEEEEBTTCSCHHHHHHHHHHT-TSHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCEEEEEHHHhhhccccccCeEEEeCcccCccceEeEEEecCCCChHHHHHHHHHH-cCHHHHHH
Confidence 456678889999999877666544332110111122 2222221 23345678888887766665555444 44455666
Q ss_pred HHHh
Q psy17442 83 MAKV 86 (90)
Q Consensus 83 ~~kW 86 (90)
..++
T Consensus 222 ~~~~ 225 (231)
T 1atg_A 222 IKAA 225 (231)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5554
No 177
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=41.02 E-value=41 Score=17.85 Aligned_cols=51 Identities=6% Similarity=-0.006 Sum_probs=29.4
Q ss_pred HHHHHHhh-cCCceEEEeehhHHhHHH----hc-CCCeEEeCCcccccceEEEEeCCCC
Q psy17442 9 PSTVVRHG-TKKLMAFIWDSSRLDFEA----AQ-DCELVTAGELFGRSGYAIGLQKGSP 61 (90)
Q Consensus 9 ~~~~~~l~-~G~ida~i~d~~~~~~~~----~~-~~~l~~~~~~~~~~~~~ia~~kgs~ 61 (90)
..++..+. .|.+--++.|.+....-+ ++ ...+.. .......|-|-++||.+
T Consensus 19 kkal~~l~~~G~~L~V~~dd~~a~~dI~~~~~~~G~~v~~--~~~~~g~~~i~I~Kg~~ 75 (87)
T 3hz7_A 19 KKALAELGEAGGVVTVLVDNDISRQNLQKMAEGMGYQSEY--LEKDNGVIEVTIVAGEG 75 (87)
T ss_dssp HHHHHTTGGGCCEEEEEESSHHHHHHHHHHHHHHTCEEEE--EECGGGCEEEEEESCC-
T ss_pred HHHHHhccCCCCEEEEEECCccHHHHHHHHHHHCCCEEEE--EEecCCEEEEEEEECCC
Confidence 45677786 888666676666443222 22 333332 22345567788899865
No 178
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=40.83 E-value=22 Score=22.86 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=17.6
Q ss_pred cccCChHHHHHHhhcCCceEEEee
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWD 26 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d 26 (90)
+.+++.++++.++++|+.-.++.|
T Consensus 10 ~~~~~ie~Ai~alr~G~~Viv~Dd 33 (233)
T 1k4i_A 10 SNFDAIPDVIQAFKNGEFVVVLDD 33 (233)
T ss_dssp --CCCHHHHHHHHHTTCCEEEECC
T ss_pred CchhHHHHHHHHHHCCCeEEEEeC
Confidence 347889999999999995444443
No 179
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=40.56 E-value=49 Score=20.40 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=36.5
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe--CCcccccceEEEEeCCCCChHHHHHHHHHh
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA--GELFGRSGYAIGLQKGSPWADAVTLAILDF 73 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~--~~~~~~~~~~ia~~kgs~l~~~vn~~l~~l 73 (90)
+.+++...+...+.+|.--+++-....... ......+..+ .......+++++.+++......+...+..+
T Consensus 223 ~~~~~~~~~~~~v~~g~Gia~lp~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 294 (306)
T 3fzv_A 223 FSSPSIEMVRGMVGQGFGFSLLVTRPHSEC-TYDGKKVVMVDLAEPVSTSGLAAAWLKRAQLTKPARLFVDYC 294 (306)
T ss_dssp EEESCHHHHHHHHHTTSCBEEECCCCSCSB-CTTSCBEEEEEESSCCCBCCCEEEEETTSCCCHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHcCCCEEEEeccccccc-ccCCCceEEEECCCCCccceEEEEEeCCcccCHHHHHHHHHH
Confidence 345677777777888875555544332211 1111224444 223334567888888754444444444333
No 180
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=38.98 E-value=56 Score=19.00 Aligned_cols=69 Identities=10% Similarity=-0.049 Sum_probs=38.2
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCC--cccccceEEEEeCCCCChHHHHHHHHHh
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGE--LFGRSGYAIGLQKGSPWADAVTLAILDF 73 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~--~~~~~~~~ia~~kgs~l~~~vn~~l~~l 73 (90)
+.+++...++..+.+|.--+++-.... .... ....+..+.- ......++++.+++.+....+...+..+
T Consensus 133 ~~~~~~~~~~~lv~~g~Gia~lp~~~~-~~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 203 (219)
T 1i6a_A 133 FRATSLETLRNMVAAGSGITLLPALAV-PPER-KRDGVVYLPAIKPEPRRTIGLVYRPGSPLRSRYEQLAEAI 203 (219)
T ss_dssp TTTSCHHHHHHHHHTTSCBEEEEGGGS-CSSS-EETTEEEECEESSCCEEEEEEEECTTCTTHHHHHHHHHHH
T ss_pred EeeCCHHHHHHHHHhCCCEEEeehhhh-hhhc-cCCcEEEEECCCCcceEEEEEEECCCCCCCHHHHHHHHHH
Confidence 456778888889999986666654332 1111 1124544432 1122357788888766554444444433
No 181
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=38.96 E-value=67 Score=19.76 Aligned_cols=67 Identities=9% Similarity=-0.038 Sum_probs=38.1
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe-CCccc--ccceEEEEeCCCCChHHHHHHHH
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA-GELFG--RSGYAIGLQKGSPWADAVTLAIL 71 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~-~~~~~--~~~~~ia~~kgs~l~~~vn~~l~ 71 (90)
+.+++...+...+.+|.--+++-. ..+....... .+..+ ..... ...+.++.+++.+....+...+.
T Consensus 218 ~~~~~~~~~~~~v~~G~Gia~lp~-~~~~~~~~~g-~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~ 287 (306)
T 3hhg_A 218 FTASSGEILRSLCLSGCGIVCLSD-FLVDNDIAEG-KLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLD 287 (306)
T ss_dssp SEESSHHHHHHHHHTTSCEEEEEH-HHHHHHHHHT-SSEECSTTTBCCCEEEEEEEECSGGGGCHHHHHHHH
T ss_pred EEECCHHHHHHHHHhCCCeEeccH-HHHHHHHhCC-CcEEeCCCCcCCCCccEEEEecCCCcCCHHHHHHHH
Confidence 457888889999999996565544 3444333332 33333 32222 24677888887544444444333
No 182
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A
Probab=38.72 E-value=75 Score=20.24 Aligned_cols=73 Identities=5% Similarity=-0.078 Sum_probs=42.6
Q ss_pred HHHHHhhcCCceEEEeehhHHhHHHh------cCCCeEEeCCc--ccccceEEEEeCCCCChHHHHHHHHHhhhccHHHH
Q psy17442 10 STVVRHGTKKLMAFIWDSSRLDFEAA------QDCELVTAGEL--FGRSGYAIGLQKGSPWADAVTLAILDFHESTVCYL 81 (90)
Q Consensus 10 ~~~~~l~~G~ida~i~d~~~~~~~~~------~~~~l~~~~~~--~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~G~~~~ 81 (90)
+....+.+|++.+.+.-......... ...++..+-+. ......+++++++++-.+..-+.|.-|.......+
T Consensus 205 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~I~~~s~~~~~A~~fi~fl~s~e~q~~ 284 (346)
T 3ttm_A 205 KYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAE 284 (346)
T ss_dssp THHHHHHHTSCSEEEEEHHHHHHHHHHHHHHTSSCCCEEECCTTCEEEEEEEEECBTTCSCSHHHHHHHHHHTSHHHHHH
T ss_pred hHHHHHhcCCeEEEEeccHHHHHHHHhhhhcccCCceEEEEcCCCceEEEEEEEEECCCCCHHHHHHHHHHhcCHHHHHH
Confidence 67788999998887765443333321 13345443211 11123468999999877777777776664433333
Q ss_pred H
Q psy17442 82 F 82 (90)
Q Consensus 82 l 82 (90)
+
T Consensus 285 ~ 285 (346)
T 3ttm_A 285 I 285 (346)
T ss_dssp H
T ss_pred H
Confidence 3
No 183
>1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta sheet, sugar binding protein, signaling protein; HET: CBS; 2.20A {Vibrio cholerae} PDB: 1zty_A*
Probab=38.22 E-value=31 Score=24.11 Aligned_cols=20 Identities=5% Similarity=-0.170 Sum_probs=16.8
Q ss_pred cCChHHHHHHhhcCCceEEE
Q psy17442 5 VKFSPSTVVRHGTKKLMAFI 24 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i 24 (90)
+.+....+.+|++|++|.+.
T Consensus 200 i~d~~~~~~al~~GeiD~~~ 219 (529)
T 1zu0_A 200 IANNDQLLGKIVNSELDWTS 219 (529)
T ss_dssp CCSHHHHHHHHHTTCCSEEC
T ss_pred eCCHHHHHHHHHcCCccccc
Confidence 46777889999999999864
No 184
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=38.15 E-value=28 Score=22.01 Aligned_cols=56 Identities=14% Similarity=-0.055 Sum_probs=37.3
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCC
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPW 62 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l 62 (90)
++..+...++.++.+|.+|....+++.-... ++.+ +.- ..+...+.+++++++++.
T Consensus 69 ~~~~GSg~g~~~~~~G~~di~~as~~~~~~e-~~~~-~~~--~~ia~d~~~vivn~~n~~ 124 (279)
T 4gd5_A 69 INQIGSSAGIKNAMEGVSEIGMASRDLKGEE-KQAG-LKE--VEIAYDGIALITHKNNPV 124 (279)
T ss_dssp EEECCHHHHHHHHHHTSSSEEEESSCCCHHH-HTTC-CEE--EEEEEEEEEEEEETTCSC
T ss_pred EeeCCcHHHHHHHHcCCCcEEEecchhhhhH-hhcC-ceE--EEEEeeceeeeeccCCcc
Confidence 4556788999999999999888877653322 2222 221 134556778888888763
No 185
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=38.13 E-value=21 Score=23.49 Aligned_cols=51 Identities=2% Similarity=-0.241 Sum_probs=30.3
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHh--cCCCeEEeCCcccccceEEEEeCC
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAA--QDCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~--~~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
..+|.+.+|++|.||+.....+.+. ..+ .-.++..... ....+..+++.+.
T Consensus 184 ~~~Evy~ALq~G~VDg~~~p~~~~~-~~~~~ev~ky~~~~~-~~~~~~~~~~n~~ 236 (327)
T 2hpg_A 184 NFGEIYTAVQTRAVDGAELTYANVY-NGGLYEVLKYMSETG-HFLLINFEIVSAD 236 (327)
T ss_dssp CGGGHHHHHHTTSCSEEEECHHHHH-HTTGGGTCCEEEEEE-EEEEEEEEEEEHH
T ss_pred CHHHHHHHHHcCCeeEEECCHHHHH-HcChhhhccEEEecC-cchhceEEEEeHH
Confidence 4578999999999999998655431 111 1233322221 1234456777775
No 186
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=37.83 E-value=16 Score=21.18 Aligned_cols=23 Identities=13% Similarity=-0.162 Sum_probs=18.4
Q ss_pred CChHHHHHHhhcCCceEEEeehh
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~ 28 (90)
.+..++-.+|++|++++++.=.+
T Consensus 42 ~s~~ea~~~l~~g~~~~~l~IP~ 64 (156)
T 3cni_A 42 SDLKEAEEAVKKEKAPAIIVIPK 64 (156)
T ss_dssp SCHHHHHHHHHHHTCSEEEEECT
T ss_pred CCHHHHHHHHHcCCeeEEEEECc
Confidence 57888999999999988776443
No 187
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=37.49 E-value=22 Score=19.07 Aligned_cols=17 Identities=0% Similarity=0.065 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhhhccHH
Q psy17442 63 ADAVTLAILDFHESTVC 79 (90)
Q Consensus 63 ~~~vn~~l~~l~~~G~~ 79 (90)
++.||++|.+|+..|.+
T Consensus 48 KKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 48 KRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 57899999999998853
No 188
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=37.02 E-value=35 Score=22.54 Aligned_cols=64 Identities=8% Similarity=-0.020 Sum_probs=37.7
Q ss_pred hHHHHHHhhcCCceEEEeehhHHhHHHh--cCCCeEEeCCcccccceEEEEeCC-----CC-ChHHHHHHHHHh
Q psy17442 8 SPSTVVRHGTKKLMAFIWDSSRLDFEAA--QDCELVTAGELFGRSGYAIGLQKG-----SP-WADAVTLAILDF 73 (90)
Q Consensus 8 ~~~~~~~l~~G~ida~i~d~~~~~~~~~--~~~~l~~~~~~~~~~~~~ia~~kg-----s~-l~~~vn~~l~~l 73 (90)
.+|.+.+|++|-||+.....+.+. ..+ .-.++..... ....++.+++.+. ++ .++.|..+..+.
T Consensus 184 ~~Evy~ALq~GvvDg~e~~~~~~~-~~~~~Ev~ky~~~~~-h~~~~~~~~~n~~~w~~L~~e~q~~i~~a~~e~ 255 (328)
T 3u65_B 184 NARLAPLLKAGSIDGFLSVHLFTW-ATGFYRYISYALDTK-ICPAVIGMLISDGSWARIPSRYHDAMLQAATRV 255 (328)
T ss_dssp TCCHHHHHHHTSCCEEEECHHHHH-HSCGGGGCCEEECSC-CEEEEEEEEEEHHHHTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccceEecCHHHHH-HcchhhcCcEEEEcC-ccccceEEEEcHHHHhcCCHHHHHHHHHHHHHH
Confidence 467889999999999998766542 111 1233333322 2334566777763 33 666666654443
No 189
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=36.97 E-value=94 Score=20.88 Aligned_cols=69 Identities=7% Similarity=-0.119 Sum_probs=42.7
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCc-c-------cccceEEEEeCCCCChHHHHHHHH-Hhhh
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGEL-F-------GRSGYAIGLQKGSPWADAVTLAIL-DFHE 75 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~-~-------~~~~~~ia~~kgs~l~~~vn~~l~-~l~~ 75 (90)
+..++...+.+|++..++.....+..+...+.++.++.-+ . ...+.+++++++++-.+..-+.|. -|..
T Consensus 209 ~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~I~~~s~~~e~A~~fl~~~l~s 286 (449)
T 3iot_A 209 DYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLT 286 (449)
T ss_dssp CHHHHHHHHHTTCBSEEEECGGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBTTCSCHHHHHHHHHHTTSS
T ss_pred ChhHHHHHHHcCCeeEEeccccchhhHHhcCCceeEEeCCCCCCCCCCceeceeEEEEECCCCCHHHHHHHHHHHhcC
Confidence 4567888999999877776555444444434455544211 1 112457899999887777666665 4433
No 190
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=35.20 E-value=83 Score=19.73 Aligned_cols=80 Identities=9% Similarity=-0.063 Sum_probs=44.4
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHH------------------hcCCCeEEe-CCc-----ccccceEEEEeCCCC
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEA------------------AQDCELVTA-GEL-----FGRSGYAIGLQKGSP 61 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~------------------~~~~~l~~~-~~~-----~~~~~~~ia~~kgs~ 61 (90)
.+..+.+..+.+|++|+.+.-...+.... .....+.++ ... .....+++++.|+++
T Consensus 188 ~~~~~~~~~v~~Ge~~~~i~~~s~a~~~~~~~~~~p~~~~~~~~~~~~~~~~v~~~~p~~g~~~~~~~~~~~~~i~k~a~ 267 (296)
T 3cg1_A 188 PKETDLLGLVESGSIDYIFIYKSVAKQHNLSYITLPSEINLGDFSKEKFYGQISITLGSTGKTIKAKPIVYGVTVLKDAP 267 (296)
T ss_dssp SSGGGGHHHHHHTSSSEEEEEHHHHHHTTCEEEECCTTTSSCCGGGHHHHTTCEEEETTTCCEEECCCCEEEEEECTTCT
T ss_pred CchHHHHHHHhCCCCCEEEEEhhHHHHcCCCeEecChhhccccccccccccceeEEecCCcccccCceeeeeEEEeCCCC
Confidence 34567889999999998776544433210 000112222 111 112356899999988
Q ss_pred ChHHHHHHHHHhhhccHHHHHHHHh
Q psy17442 62 WADAVTLAILDFHESTVCYLFMAKV 86 (90)
Q Consensus 62 l~~~vn~~l~~l~~~G~~~~l~~kW 86 (90)
-.+..-..|.-|. +.+-+++..++
T Consensus 268 ~~~~A~~Fi~fl~-s~e~q~~~~~~ 291 (296)
T 3cg1_A 268 NREVAIEFLRYLL-SENGKRIFEKN 291 (296)
T ss_dssp THHHHHHHHHHHH-SHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh-ChHHHHHHHHc
Confidence 6666555554444 44555555554
No 191
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=34.21 E-value=37 Score=19.21 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=16.8
Q ss_pred HHHHhhhccHHHHHHHHhcc
Q psy17442 69 AILDFHESTVCYLFMAKVHL 88 (90)
Q Consensus 69 ~l~~l~~~G~~~~l~~kW~~ 88 (90)
.|.+|.++|+++++.+++..
T Consensus 92 dl~~l~~~GeL~~lL~~~Gi 111 (118)
T 2wul_A 92 ILLQMHQNGDLVEELKKLGI 111 (118)
T ss_dssp HHHHHHHHTHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHcCC
Confidence 47889999999999988754
No 192
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=33.93 E-value=32 Score=20.06 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=18.0
Q ss_pred ChHHHHHHhhcCCceEEEeehh
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~ 28 (90)
..++....+++|++|.+|.-..
T Consensus 62 G~p~I~d~I~~geIdlVInt~~ 83 (134)
T 2xw6_A 62 GDQQMGARVAEGRILAVIFFRD 83 (134)
T ss_dssp HHHHHHHHHHTTCEEEEEEECC
T ss_pred CcchHHHHHHCCCccEEEEccC
Confidence 4567899999999999997654
No 193
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=33.74 E-value=1.2e+02 Score=20.96 Aligned_cols=65 Identities=6% Similarity=-0.163 Sum_probs=39.9
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcc--------cccceEEEEeCCCCChHHHHHHHH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELF--------GRSGYAIGLQKGSPWADAVTLAIL 71 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~--------~~~~~~ia~~kgs~l~~~vn~~l~ 71 (90)
+..++...+.+|++..++...-.+..+...+.++.++.-+. ...+.+++++++++-.+..-+.|.
T Consensus 209 ~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~eaA~~Fi~ 281 (500)
T 3ob4_A 209 DYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLE 281 (500)
T ss_dssp CHHHHHHHHHTTCEEEEEECGGGHHHHHTSSCCEEEECCCEETTEECCCEEEEEEEEEETTCSCHHHHHHHHH
T ss_pred ChhHHHHHHHcCCeeEEecCchhHHHHHhcCCCeEEEECCCCCCCCccccccceEEEEECCCCCHHHHHHHHH
Confidence 45678899999997666655444444433344555542111 112357899999887777766665
No 194
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=33.63 E-value=22 Score=22.90 Aligned_cols=51 Identities=8% Similarity=-0.077 Sum_probs=28.9
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHh--cCCCeEEeCCcccccceEEEEeCC
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAA--QDCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~--~~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
..+|.+.+|++|.|||.....+... ..+ ...++..... ....+..+.+.+.
T Consensus 164 ~~~E~y~ALq~G~vDg~~~~~~~~~-~~~~~ev~k~~~~~~-~~~~~~~~~~n~~ 216 (301)
T 2pfy_A 164 QTPEVPQAFSTGVIDAMLTSPATGV-DSQAWDYVKYYYDAQ-AFIPQSFVIANKR 216 (301)
T ss_dssp CGGGHHHHHHTTSCSBEEECHHHHH-HTTGGGTCCEEEECC-CCCCEEEEEEEHH
T ss_pred cHHHHHHHHhcceeeeEecCccccc-cccHHHHhhhhcccc-cccceeeEEEcHH
Confidence 4678999999999999965433321 112 1233333222 2234456777764
No 195
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=33.56 E-value=36 Score=16.78 Aligned_cols=20 Identities=5% Similarity=-0.185 Sum_probs=13.8
Q ss_pred HHHHHHhhhccHHHHHHHHh
Q psy17442 67 TLAILDFHESTVCYLFMAKV 86 (90)
Q Consensus 67 n~~l~~l~~~G~~~~l~~kW 86 (90)
..-+..|--.|.++++.+||
T Consensus 15 eekvkalggggrieelkkkw 34 (67)
T 1lq7_A 15 EEKVKALGGGGRIEELKKKW 34 (67)
T ss_dssp HHHHHHSCCSSSHHHHHHHH
T ss_pred HHHHHHhcCCccHHHHHHHH
Confidence 33444555677888888888
No 196
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=33.42 E-value=91 Score=19.63 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=40.6
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeC--CcccccceEEEEeCCCCChHHHHHHHHHhhh
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAG--ELFGRSGYAIGLQKGSPWADAVTLAILDFHE 75 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~--~~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~ 75 (90)
+.+++...++..+.+|.--+++-.. .+.... ...+..+. .......+.++.+++..+...+...+..+++
T Consensus 222 ~~~~~~~~~~~lv~~G~Giailp~~-~~~~~~--~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~fi~~l~~ 293 (324)
T 1al3_A 222 FTATDADVIKTYVRLGLGVGVIASM-AVDPVS--DPDLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAP 293 (324)
T ss_dssp EEESSHHHHHHHHHHTSCEEEEEGG-GCCTTT--CTTSEEEECBTTBCCEEEEEEEETTCCCCHHHHHHHHHHCT
T ss_pred EEeCCHHHHHHHHHhCCCeEEechh-hhhhhc--cCCeEEEECCCCCcceEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3567777788888888865555432 221111 23455442 2223456788889887666666666655554
No 197
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*
Probab=33.25 E-value=92 Score=19.67 Aligned_cols=68 Identities=9% Similarity=-0.116 Sum_probs=41.4
Q ss_pred HHHHHHhhcCCceEEEeehhHHhHHHh------cCCCeEEeCCc--ccccceEEEEeCCCCChHHHHHHHHHhhhc
Q psy17442 9 PSTVVRHGTKKLMAFIWDSSRLDFEAA------QDCELVTAGEL--FGRSGYAIGLQKGSPWADAVTLAILDFHES 76 (90)
Q Consensus 9 ~~~~~~l~~G~ida~i~d~~~~~~~~~------~~~~l~~~~~~--~~~~~~~ia~~kgs~l~~~vn~~l~~l~~~ 76 (90)
.+....+.+|++.+.+.-......... ...++..+-+. -.....+++++++++-.+..-+.|.-|...
T Consensus 200 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~ 275 (340)
T 3ttn_A 200 SKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRP 275 (340)
T ss_dssp SHHHHHHHHTSCSEEEEEHHHHHHHHHHHHHHTSCCCEEEECCTTCCEEEEEEEECBTTCSCHHHHHHHHHHHTSH
T ss_pred chHHHHHhcCCeEEEEeccHHHHHHHHhhhhccCCCceEEEeCCCccceeEEEEEEECCCCCHHHHHHHHHHhcCH
Confidence 367889999998887765443333321 13455544221 112234689999998777777777766643
No 198
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=33.11 E-value=35 Score=19.17 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=20.5
Q ss_pred cCChHHHHHHhhcCCceEEEeehh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~ 28 (90)
..+..+|+..+.+.+.|.++.|..
T Consensus 39 a~~g~eAl~~~~~~~~DlvllDi~ 62 (123)
T 2lpm_A 39 ASRMQEALDIARKGQFDIAIIDVN 62 (123)
T ss_dssp SCCHHHHHHHHHHCCSSEEEECSS
T ss_pred ECCHHHHHHHHHhCCCCEEEEecC
Confidence 467889999999999999998743
No 199
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=32.70 E-value=27 Score=19.55 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=16.5
Q ss_pred HHHHhhhccHHHHHHHHhcc
Q psy17442 69 AILDFHESTVCYLFMAKVHL 88 (90)
Q Consensus 69 ~l~~l~~~G~~~~l~~kW~~ 88 (90)
.+.+|.++|++.++.++|..
T Consensus 92 ~l~~l~~~G~L~~~L~~~g~ 111 (118)
T 2wem_A 92 ILLQMHQNGDLVEELKKLGI 111 (118)
T ss_dssp HHHHHHHHSHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHcCC
Confidence 37788999999999988753
No 200
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=32.45 E-value=31 Score=23.20 Aligned_cols=33 Identities=15% Similarity=0.042 Sum_probs=26.6
Q ss_pred eEEEEeCCC-CChHHHHHHHHHhhhccHHHHHHH
Q psy17442 52 YAIGLQKGS-PWADAVTLAILDFHESTVCYLFMA 84 (90)
Q Consensus 52 ~~ia~~kgs-~l~~~vn~~l~~l~~~G~~~~l~~ 84 (90)
..|++...- .|.+.||..+..|.+.|.++|...
T Consensus 193 ~~i~L~~~R~~L~~RI~~Rvd~Ml~~Gl~eEv~~ 226 (322)
T 3exa_A 193 VMIGLTMERDVLYDRINRRVDQMVEEGLIDEAKK 226 (322)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 346666653 499999999999999999998754
No 201
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=32.22 E-value=1.3e+02 Score=20.87 Aligned_cols=65 Identities=6% Similarity=-0.142 Sum_probs=40.3
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcc-c-------ccceEEEEeCCCCChHHHHHHHH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELF-G-------RSGYAIGLQKGSPWADAVTLAIL 71 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~-~-------~~~~~ia~~kgs~l~~~vn~~l~ 71 (90)
+..++...+.+|++..++...-....+...+.++.++.-+. . ..+.+++++++++-.+..-..|.
T Consensus 210 ~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~eaA~~fi~ 282 (523)
T 3py7_A 210 DYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLE 282 (523)
T ss_dssp CHHHHHHHHHTTSEEEEEECGGGHHHHHHSSCCEEEECCCEETTEECCCEEEEEEEEEBTTCSCHHHHHHHHH
T ss_pred ChHHHHHHHhcCCEEEEecCCcchhHHHhcCCceeEEECCCCCCCCCCccccceEEEEECCCCCHHHHHHHHH
Confidence 45778899999997666665444444433344555542111 1 12357899999887776666665
No 202
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=32.20 E-value=41 Score=23.37 Aligned_cols=33 Identities=12% Similarity=-0.002 Sum_probs=26.6
Q ss_pred eEEEEeCCC-CChHHHHHHHHHhhhccHHHHHHH
Q psy17442 52 YAIGLQKGS-PWADAVTLAILDFHESTVCYLFMA 84 (90)
Q Consensus 52 ~~ia~~kgs-~l~~~vn~~l~~l~~~G~~~~l~~ 84 (90)
..|++...- .|.+.||..+..|.+.|.++|...
T Consensus 190 ~~i~L~~~R~~L~~RI~~Rvd~Ml~~GlleEv~~ 223 (409)
T 3eph_A 190 LFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQ 223 (409)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHHHCcHHHHHHH
Confidence 446776663 499999999999999999998653
No 203
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=32.19 E-value=94 Score=19.45 Aligned_cols=57 Identities=9% Similarity=-0.152 Sum_probs=31.1
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeC--CcccccceEEEEeCCCC
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAG--ELFGRSGYAIGLQKGSP 61 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~--~~~~~~~~~ia~~kgs~ 61 (90)
+.+++.......+.+|.--+++-.. .+..... ...+..+. .......++++.+++.+
T Consensus 232 ~~~~~~~~~~~~v~~g~giailp~~-~~~~~~~-~~~l~~~~~~~~~~~~~~~l~~~~~~~ 290 (315)
T 1uth_A 232 LVVPHFIAIGPILHSTDLIATVPQR-FAVRCEV-PFGLTTSPHPAKLPDIAINLFWHAKYN 290 (315)
T ss_dssp EEESSSTTHHHHHHTSSCBEEEEHH-HHHHHTT-TTTEEEEECSSCCCCEEEEEEEEGGGT
T ss_pred EECCcHHHHHHHHhcCCEEEEcHHH-HHHHHhh-cCCceEeCCCCCCCCccEEEEECCccC
Confidence 3456777777888888755555433 2222222 23455442 22233467778888644
No 204
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=32.12 E-value=44 Score=17.62 Aligned_cols=24 Identities=8% Similarity=-0.123 Sum_probs=20.3
Q ss_pred cCChHHHHHHhhcCCceEEEeehh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~ 28 (90)
+.+..+++..+...+.|.++.|..
T Consensus 32 ~~~~~~al~~~~~~~~dlii~D~~ 55 (120)
T 3f6p_A 32 AHDGNEAVEMVEELQPDLILLDIM 55 (120)
T ss_dssp ESSHHHHHHHHHTTCCSEEEEETT
T ss_pred eCCHHHHHHHHhhCCCCEEEEeCC
Confidence 567889999999999999999853
No 205
>4gl8_A Oligopeptide ABC transporter oppaiv; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Borrelia burgdorferi B31}
Probab=31.44 E-value=29 Score=24.08 Aligned_cols=25 Identities=12% Similarity=-0.126 Sum_probs=19.5
Q ss_pred ccCChHHHHHHhhcCCceEEEeehh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~ 28 (90)
.+++...++.++++|++|++....+
T Consensus 243 ~~~d~~~~~~~l~~G~~D~~~~~~~ 267 (529)
T 4gl8_A 243 VTDNSITAYNMYLNDELDAIFKNVP 267 (529)
T ss_dssp CCSCHHHHHHHHHTTSCSEEESCCC
T ss_pred EeecHHHHHHHHhCCCceeeccCCC
Confidence 4567788999999999998765433
No 206
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=31.44 E-value=59 Score=16.84 Aligned_cols=50 Identities=16% Similarity=0.016 Sum_probs=26.6
Q ss_pred HHHHHHhhcCCceEEEeehhHHhH----HHhcCCCeEEeCCcccccceEEEEeCC
Q psy17442 9 PSTVVRHGTKKLMAFIWDSSRLDF----EAAQDCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 9 ~~~~~~l~~G~ida~i~d~~~~~~----~~~~~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
..++..+..|.+--++.|.+.... +.++. ...++...-....|-|-++|+
T Consensus 28 kkal~~l~~G~~l~V~~dd~~a~~di~~~~~~~-G~~~~~~~~~~~~~~i~I~K~ 81 (82)
T 3lvj_C 28 RKTVRNMQPGETLLIIADDPATTRDIPGFCTFM-EHELVAKETDGLPYRYLIRKG 81 (82)
T ss_dssp HHHHHTSCTTCEEEEEECCTTHHHHHHHHHHHT-TCEEEEEECSSSSEEEEEECC
T ss_pred HHHHHhCCCCCEEEEEECCccHHHHHHHHHHHC-CCEEEEEEecCCEEEEEEEEC
Confidence 456777788885556666554322 22222 223332222345677888875
No 207
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=31.20 E-value=37 Score=20.26 Aligned_cols=20 Identities=10% Similarity=-0.047 Sum_probs=16.4
Q ss_pred hHHHHHHhhcCCceEEEeeh
Q psy17442 8 SPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 8 ~~~~~~~l~~G~ida~i~d~ 27 (90)
.++....+++|++|.+|.-.
T Consensus 71 ~p~I~d~I~~geIdlVInt~ 90 (152)
T 1b93_A 71 DQQVGALISEGKIDVLIFFW 90 (152)
T ss_dssp HHHHHHHHHTTCCCEEEEEC
T ss_pred CchHHHHHHCCCccEEEEcC
Confidence 45689999999999988743
No 208
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=30.96 E-value=51 Score=17.71 Aligned_cols=24 Identities=4% Similarity=-0.176 Sum_probs=20.2
Q ss_pred ccCChHHHHHHhhcCCceEEEeeh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
.+.+..+++..+.....|+++.|.
T Consensus 36 ~~~~~~~a~~~l~~~~~dlii~d~ 59 (142)
T 3cg4_A 36 SADSGGQCIDLLKKGFSGVVLLDI 59 (142)
T ss_dssp EESSHHHHHHHHHTCCCEEEEEES
T ss_pred EeCCHHHHHHHHHhcCCCEEEEeC
Confidence 356788999999999999999874
No 209
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}
Probab=30.71 E-value=1.5e+02 Score=21.28 Aligned_cols=65 Identities=6% Similarity=-0.159 Sum_probs=40.1
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcc--------cccceEEEEeCCCCChHHHHHHHH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELF--------GRSGYAIGLQKGSPWADAVTLAIL 71 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~--------~~~~~~ia~~kgs~l~~~vn~~l~ 71 (90)
+..++...+.+|++-.++...-.+..+...+.++.++.-+. ...+.+++++++++-.+..-+.|.
T Consensus 209 ~~~~~~~~f~~Gk~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~eaA~~Fl~ 281 (658)
T 3f5f_A 209 DYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLE 281 (658)
T ss_dssp CHHHHHHHHHTTSEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHHHHHHHHH
T ss_pred CchHHHHHHHCCCEEEEEechhhhHHHHhcCCCEEEEECCCCCCCCCccccCceEEEEECCCCCHHHHHHHHH
Confidence 45678899999997666655444444444444555542111 112357899999887776666665
No 210
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=30.53 E-value=40 Score=17.82 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=20.2
Q ss_pred ccCChHHHHHHhhcCCceEEEeeh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
.+.+..+++..+...+.|.++.|.
T Consensus 32 ~~~~~~~a~~~l~~~~~dlii~D~ 55 (127)
T 3i42_A 32 YVMSGTDALHAMSTRGYDAVFIDL 55 (127)
T ss_dssp EESSHHHHHHHHHHSCCSEEEEES
T ss_pred EECCHHHHHHHHHhcCCCEEEEeC
Confidence 356788999999999999999884
No 211
>3m8u_A Heme-binding protein A; glutathione binding protein, ABC-type transport system, PERI component, transport protein; HET: GDS; 1.85A {Haemophilus parasuis}
Probab=30.06 E-value=1.3e+02 Score=20.88 Aligned_cols=54 Identities=7% Similarity=-0.087 Sum_probs=30.1
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
+++....+.+|++|++|.+....+.....++.+..+.+.... ....+.+++.-.
T Consensus 221 ~~d~~~~~~al~~GevD~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~N~~ 274 (522)
T 3m8u_A 221 VPDATARYAKLQAGACDLIDFPNAADLEKMKTDPKVNLHSQS-GLNIAYIAFNTE 274 (522)
T ss_dssp CCCHHHHHHHHHHTSCSEESSCCHHHHHHHTSCTTCEEEEEE-CSEEEEEEECTT
T ss_pred cCCHHHHHHHHHCCCcceecCCCHHHHHHHhcCCCeEEEEcC-CCcEEEEEEeCC
Confidence 467778899999999998744332222223344555544221 122334666554
No 212
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=29.99 E-value=29 Score=22.27 Aligned_cols=22 Identities=0% Similarity=-0.071 Sum_probs=15.9
Q ss_pred cCChHHHHHHhhcCCceEEEee
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWD 26 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d 26 (90)
+++.++++.++++|+.-.++.|
T Consensus 1 ~~~ie~Ai~alr~G~~Viv~Dd 22 (227)
T 1snn_A 1 MNNVEKAIEALKKGEIILVYDS 22 (227)
T ss_dssp -CHHHHHHHHHHTTCCEEEECC
T ss_pred CchHHHHHHHHHCCCeEEEEeC
Confidence 3567899999999995444443
No 213
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=29.61 E-value=45 Score=18.12 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=21.1
Q ss_pred ccCChHHHHHHhhcCCceEEEeehh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~ 28 (90)
.+.+..+++..+...+.|+++.|..
T Consensus 36 ~~~~~~~a~~~l~~~~~dlii~D~~ 60 (144)
T 3kht_A 36 FVDNGAKALYQVQQAKYDLIILDIG 60 (144)
T ss_dssp EESSHHHHHHHHTTCCCSEEEECTT
T ss_pred EECCHHHHHHHhhcCCCCEEEEeCC
Confidence 3568899999999999999999853
No 214
>2cjr_A Nucleocapsid protein; oligomerization domain, viral protein; 2.50A {Sars coronavirus} SCOP: d.254.1.2 PDB: 2jw8_A
Probab=29.55 E-value=22 Score=20.81 Aligned_cols=24 Identities=21% Similarity=0.014 Sum_probs=17.3
Q ss_pred ccceEEEEeCCCC----ChHHHHHHHHH
Q psy17442 49 RSGYAIGLQKGSP----WADAVTLAILD 72 (90)
Q Consensus 49 ~~~~~ia~~kgs~----l~~~vn~~l~~ 72 (90)
...|.+-+||++| +.+.+|..|..
T Consensus 96 ty~y~i~vpkddP~~~~~l~~l~~~vdA 123 (128)
T 2cjr_A 96 TYHGAIKLDDKDPQFKDNVILLNKHIDA 123 (128)
T ss_dssp EEEEEEECCTTSTTHHHHHHHHHHHBTG
T ss_pred EEEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 3468899999998 66666665543
No 215
>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2
Probab=29.15 E-value=31 Score=21.79 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=9.9
Q ss_pred cCCceEEEeehhHHhHHHh
Q psy17442 17 TKKLMAFIWDSSRLDFEAA 35 (90)
Q Consensus 17 ~G~ida~i~d~~~~~~~~~ 35 (90)
.|++|++|.+..-|.+|.+
T Consensus 183 ~GradGyiLEGkELeFY~~ 201 (208)
T 2xzm_2 183 SGRADGYILEGKELEFYIR 201 (208)
T ss_dssp HSCCEEEECCHHHHHHHHH
T ss_pred cccccEEEEechhHHHHHH
Confidence 3455555555555555543
No 216
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=29.05 E-value=41 Score=22.53 Aligned_cols=33 Identities=6% Similarity=-0.071 Sum_probs=26.3
Q ss_pred eEEEEeC-C-CCChHHHHHHHHHhhhccHHHHHHH
Q psy17442 52 YAIGLQK-G-SPWADAVTLAILDFHESTVCYLFMA 84 (90)
Q Consensus 52 ~~ia~~k-g-s~l~~~vn~~l~~l~~~G~~~~l~~ 84 (90)
..|++.. + ..|.+.||..+..|.+.|.++|...
T Consensus 198 ~~i~L~~~~R~~L~~RI~~Rvd~Ml~~Gl~eEv~~ 232 (316)
T 3foz_A 198 HQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRA 232 (316)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3466655 4 3499999999999999999988654
No 217
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Probab=28.87 E-value=1.3e+02 Score=20.19 Aligned_cols=65 Identities=8% Similarity=-0.112 Sum_probs=39.6
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCc-c-------cccceEEEEeCCCCChHHHHHHHH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGEL-F-------GRSGYAIGLQKGSPWADAVTLAIL 71 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~-~-------~~~~~~ia~~kgs~l~~~vn~~l~ 71 (90)
+..++...+.+|++-.++...-.+..+...+.++.++.-+ . ...+.+++++++++-.+..-+.|.
T Consensus 209 ~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fl~ 281 (507)
T 3oai_A 209 DYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLE 281 (507)
T ss_dssp CHHHHHHHHHTTCEEEEEECGGGHHHHHHHCCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHHHHHHHHH
T ss_pred chhHHHHHHhcCCeEEEeccccccChhhhcCCceeEEeCCCCCCCCCCccccceEEEEECCCCCHHHHHHHHH
Confidence 4567889999999666665444443333334455544211 1 112357899999887777766665
No 218
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=28.69 E-value=49 Score=17.50 Aligned_cols=24 Identities=13% Similarity=-0.065 Sum_probs=20.3
Q ss_pred cCChHHHHHHhhcCCceEEEeehh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~ 28 (90)
+.+..+++..+.+.+.|.++.|..
T Consensus 37 ~~~~~~a~~~l~~~~~dlvi~d~~ 60 (130)
T 3eod_A 37 AADGVDALELLGGFTPDLMICDIA 60 (130)
T ss_dssp ESCHHHHHHHHTTCCCSEEEECCC
T ss_pred eCCHHHHHHHHhcCCCCEEEEecC
Confidence 567889999999999999998843
No 219
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=28.53 E-value=44 Score=18.10 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=20.3
Q ss_pred ccCChHHHHHHhhcCCceEEEeeh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
.+.+..+++..+...+.|+++.|.
T Consensus 33 ~~~~~~~al~~~~~~~~dlvl~D~ 56 (136)
T 3t6k_A 33 RAASGEEALQQIYKNLPDALICDV 56 (136)
T ss_dssp EESSHHHHHHHHHHSCCSEEEEES
T ss_pred EeCCHHHHHHHHHhCCCCEEEEeC
Confidence 356788999999999999999884
No 220
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Probab=28.50 E-value=1.6e+02 Score=20.86 Aligned_cols=65 Identities=6% Similarity=-0.142 Sum_probs=40.0
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcc-c-------ccceEEEEeCCCCChHHHHHHHH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELF-G-------RSGYAIGLQKGSPWADAVTLAIL 71 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~-~-------~~~~~ia~~kgs~l~~~vn~~l~ 71 (90)
+..++...+.+|++..++...-....+...+.++.++.-+. . ..+.+++++++++-.+..-+.|.
T Consensus 209 ~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~skn~eaA~~Fl~ 281 (568)
T 3h4z_A 209 DYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLE 281 (568)
T ss_dssp CHHHHHHHHHTTSEEEEEECGGGHHHHHTSSCCEEEECCCEETTEECCCEEEEEEEEEBTTCSCHHHHHHHHH
T ss_pred ChHHHHHHHHcCCeEEEEEChhHHHHHHhcCCCEEEEECCCCCCCCccceecceEEEEECCCCCHHHHHHHHH
Confidence 45678889999997666655444444433344555442111 1 12357899999987777666665
No 221
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=28.42 E-value=51 Score=18.28 Aligned_cols=24 Identities=17% Similarity=0.014 Sum_probs=20.5
Q ss_pred ccCChHHHHHHhhcCCceEEEeeh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
.+.+..+++..+...+.|+++.|.
T Consensus 36 ~~~~~~~al~~l~~~~~dlii~D~ 59 (154)
T 3gt7_A 36 HVRNGREAVRFLSLTRPDLIISDV 59 (154)
T ss_dssp EESSHHHHHHHHTTCCCSEEEEES
T ss_pred EeCCHHHHHHHHHhCCCCEEEEeC
Confidence 356788999999999999999984
No 222
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=27.82 E-value=46 Score=20.48 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=16.8
Q ss_pred hHHHHHHhhcCCceEEEeehh
Q psy17442 8 SPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 8 ~~~~~~~l~~G~ida~i~d~~ 28 (90)
.++....+++|++|.+|.-..
T Consensus 87 ~pqI~d~I~~geIdlVInt~d 107 (178)
T 1vmd_A 87 DQQIGAMIAEGKIDVLIFFWD 107 (178)
T ss_dssp HHHHHHHHHTTSCCEEEEECC
T ss_pred CchHHHHHHCCCccEEEEccC
Confidence 456899999999999887443
No 223
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=27.15 E-value=45 Score=17.71 Aligned_cols=24 Identities=13% Similarity=-0.061 Sum_probs=20.5
Q ss_pred ccCChHHHHHHhhcCCceEEEeeh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
.+.+..+++..+.+.+.|+++.|.
T Consensus 32 ~~~~~~~a~~~l~~~~~dlvi~d~ 55 (133)
T 3nhm_A 32 TAADGASGLQQALAHPPDVLISDV 55 (133)
T ss_dssp EESSHHHHHHHHHHSCCSEEEECS
T ss_pred EECCHHHHHHHHhcCCCCEEEEeC
Confidence 356788999999999999999884
No 224
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5
Probab=27.09 E-value=33 Score=22.81 Aligned_cols=21 Identities=5% Similarity=-0.184 Sum_probs=17.9
Q ss_pred CChHHHHHHhhcCCceEEEee
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWD 26 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d 26 (90)
++..-|+..+++|++||++..
T Consensus 112 ~s~~~A~~lv~~G~aDalVtg 132 (337)
T 1r5j_A 112 DVNYFGVMLVKMGLADGMVSG 132 (337)
T ss_dssp SHHHHHHHHHHTTSCSEEEEC
T ss_pred hhHHHHHHHHHCCCCcEEEEC
Confidence 455568999999999999987
No 225
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=27.04 E-value=51 Score=18.11 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=20.9
Q ss_pred ccCChHHHHHHhhcCCceEEEeehh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~ 28 (90)
.+.+..+++..+.+.+.|.++.|..
T Consensus 51 ~~~~~~~al~~l~~~~~dlii~D~~ 75 (150)
T 4e7p_A 51 QAKNGQEAIQLLEKESVDIAILDVE 75 (150)
T ss_dssp EESSHHHHHHHHTTSCCSEEEECSS
T ss_pred EECCHHHHHHHhhccCCCEEEEeCC
Confidence 3568889999999999999998843
No 226
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=27.00 E-value=44 Score=17.97 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=20.5
Q ss_pred ccCChHHHHHHhhcCCceEEEeeh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
.+.+..+++..+...+.|+++.|.
T Consensus 35 ~~~~~~~a~~~l~~~~~dlvi~d~ 58 (140)
T 3grc_A 35 MVHSAAQALEQVARRPYAAMTVDL 58 (140)
T ss_dssp EECSHHHHHHHHHHSCCSEEEECS
T ss_pred EECCHHHHHHHHHhCCCCEEEEeC
Confidence 356788999999999999999884
No 227
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=26.73 E-value=48 Score=17.56 Aligned_cols=24 Identities=0% Similarity=-0.090 Sum_probs=19.8
Q ss_pred ccCChHHHHHHhhcCCceEEEeeh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
.+.+..+++..+...+.|.++.|.
T Consensus 31 ~~~~~~~al~~l~~~~~dlvllD~ 54 (122)
T 3gl9_A 31 EAENGQIALEKLSEFTPDLIVLXI 54 (122)
T ss_dssp EESSHHHHHHHHTTBCCSEEEECS
T ss_pred EeCCHHHHHHHHHhcCCCEEEEec
Confidence 356778899999988899999874
No 228
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=26.65 E-value=48 Score=22.15 Aligned_cols=34 Identities=6% Similarity=-0.057 Sum_probs=27.1
Q ss_pred EEEEeCC-C-CChHHHHHHHHHhhhccHHHHHHHHh
Q psy17442 53 AIGLQKG-S-PWADAVTLAILDFHESTVCYLFMAKV 86 (90)
Q Consensus 53 ~ia~~kg-s-~l~~~vn~~l~~l~~~G~~~~l~~kW 86 (90)
.|++... - .|.+.||..+..|.+.|.++|...-+
T Consensus 205 ~~~L~~~~r~~L~~RI~~Rvd~M~~~Gl~~Ev~~L~ 240 (323)
T 3crm_A 205 QLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALH 240 (323)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 4666654 3 49999999999999999999976543
No 229
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=26.51 E-value=1e+02 Score=17.90 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=18.3
Q ss_pred CCCeEEeCCcccccceEEEEeCC
Q psy17442 37 DCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 37 ~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
++.++++.+.-...++|+++.-+
T Consensus 89 ~i~fTiV~~~~~~~~~glVv~s~ 111 (133)
T 2ohw_A 89 GVPFKIVSDLQFHTPLGIVIAAD 111 (133)
T ss_dssp TCCEEEECCCSSCCSEEEEEEES
T ss_pred CCCeEEecCCCCCCCeEEEEEcC
Confidence 68999998766788999887554
No 230
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Probab=26.24 E-value=1.2e+02 Score=18.81 Aligned_cols=70 Identities=6% Similarity=-0.211 Sum_probs=42.0
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHH-Hh---cCCCeEEeC-Cc----ccccceEEEEeCCCCChHHHHHHHHHhhh
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFE-AA---QDCELVTAG-EL----FGRSGYAIGLQKGSPWADAVTLAILDFHE 75 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~-~~---~~~~l~~~~-~~----~~~~~~~ia~~kgs~l~~~vn~~l~~l~~ 75 (90)
.+..++...+.+|++.+.+.....+..+ .. ...++.++- .. ....+.+++++++++-.+..-+.|.-|..
T Consensus 173 ~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~i~~~s~~~~aA~~fi~~l~s 251 (309)
T 1nnf_A 173 AKNSVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQAEAQKFVDFLAS 251 (309)
T ss_dssp SSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHHCGGGCSEEEECCCTTCGGGCEEEEEEEEBTTCSCHHHHHHHHHHHHS
T ss_pred CCCchHHHHHhcCCccEEEccHHHHHHHHhcccCCCCceEEeCCCCCCCceeeccccEEEEcCCCCHHHHHHHHHHHhC
Confidence 3456788899999998888765544443 22 122444331 11 11224578999998866666666655543
No 231
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=25.86 E-value=57 Score=21.95 Aligned_cols=33 Identities=6% Similarity=-0.056 Sum_probs=26.5
Q ss_pred eEEEEeCCC-CChHHHHHHHHHhhhccHHHHHHH
Q psy17442 52 YAIGLQKGS-PWADAVTLAILDFHESTVCYLFMA 84 (90)
Q Consensus 52 ~~ia~~kgs-~l~~~vn~~l~~l~~~G~~~~l~~ 84 (90)
..|++...- .|.+.||..+..|.+.|.++|...
T Consensus 199 ~~~~L~~~r~~L~~RI~~Rvd~M~~~Gl~~Ev~~ 232 (340)
T 3d3q_A 199 LLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQH 232 (340)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 346666653 499999999999999999998654
No 232
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=25.73 E-value=1.4e+02 Score=19.45 Aligned_cols=69 Identities=7% Similarity=-0.125 Sum_probs=41.9
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCccc----------ccceEEEEeCCCC--ChHHHHHHHHHhh
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFG----------RSGYAIGLQKGSP--WADAVTLAILDFH 74 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~----------~~~~~ia~~kgs~--l~~~vn~~l~~l~ 74 (90)
+..++...+.+|++-.++...-....+.....++.++.-+.. ..+.+++++++++ -.+..-+.|.-|.
T Consensus 246 ~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~I~~~s~~~~~e~A~~fl~~l~ 325 (414)
T 3quf_A 246 SADQVKQEFVSGNLGVMRSGPWDLPDLQKSDIDFGVAPFPAYSKEDGQWINGGPDQGFAIASRASDKEKAAAKKFLAYLN 325 (414)
T ss_dssp CHHHHHHHHHTTCEEEEEECGGGHHHHHHSSCCEEEECBCBSSCTTCCBEEEEESCEEEEBSSSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCceEEEcCcccHHHHhhhccceeEEecCCcCCCCccceecccCccEEEECCCCccCHHHHHHHHHHHc
Confidence 456788999999966666544444444333445555422111 1234689999987 7777777777664
Q ss_pred h
Q psy17442 75 E 75 (90)
Q Consensus 75 ~ 75 (90)
.
T Consensus 326 s 326 (414)
T 3quf_A 326 S 326 (414)
T ss_dssp S
T ss_pred C
Confidence 4
No 233
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=25.66 E-value=2e+02 Score=21.00 Aligned_cols=65 Identities=6% Similarity=-0.159 Sum_probs=41.0
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcc--------cccceEEEEeCCCCChHHHHHHHH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELF--------GRSGYAIGLQKGSPWADAVTLAIL 71 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~--------~~~~~~ia~~kgs~l~~~vn~~l~ 71 (90)
+..++...+.+|++..++...-.+..+.+.+.++.++.-+. .....+++++++++-.+..-+.|.
T Consensus 245 ~~~~~~~~f~sGk~am~~~gsw~~~~l~~~~~~~gv~~~P~~~g~~~~~~~g~~~~aI~k~Skn~eaA~~FI~ 317 (653)
T 3osr_A 245 DYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLE 317 (653)
T ss_dssp CHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHHHHHHHHH
T ss_pred ChHHHHHHHHCCCEEEEEeChhHHHHHhhcCCCEEEEEcCCCCCCCcceeeccEEEEEECCCCCHHHHHHHHH
Confidence 45678899999997776665544444444444555442111 112347899999987777777665
No 234
>1dpe_A Dipeptide-binding protein; peptide transport, periplasmic, chemotaxis binding proteins for active transport; 2.00A {Escherichia coli K12} SCOP: c.94.1.1 PDB: 1dpp_A
Probab=25.65 E-value=1.3e+02 Score=20.65 Aligned_cols=54 Identities=6% Similarity=-0.122 Sum_probs=29.0
Q ss_pred cCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCC
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
+.+....+.+|++|++|.+..-.+.....++++..+.+... .....+.+.+.-.
T Consensus 219 ~~d~~~~~~al~~GeiD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~N~~ 272 (507)
T 1dpe_A 219 TPDASVRYAKLQKNECQVMPYPNPADIARMKQDKSINLMEM-PGLNVGYLSYNVQ 272 (507)
T ss_dssp CCCHHHHHHHHHTTSCSBCSSCCGGGHHHHHHCTTEEEEEE-ECSEEEEEEECTT
T ss_pred ecChHHHHHHHHcCCCCEecCCCHHHHHHHhcCCCeEEEec-CCCcEEEEEeeCC
Confidence 56778889999999999764211211122233445554321 1222345666544
No 235
>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I
Probab=25.58 E-value=37 Score=21.35 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=10.0
Q ss_pred HHHhhcCCceEEEeehh
Q psy17442 12 VVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 12 ~~~l~~G~ida~i~d~~ 28 (90)
.....+|++.|.|.+.|
T Consensus 157 eeqf~~GrllA~isSRP 173 (200)
T 3u5c_I 157 ESQFSAGRLYACISSRP 173 (200)
T ss_dssp HHHHHTTCCEEEECSCH
T ss_pred HHHHhhCcEEEEEecCC
Confidence 34555666666665554
No 236
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=25.18 E-value=52 Score=21.56 Aligned_cols=51 Identities=10% Similarity=-0.158 Sum_probs=30.6
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHh--cCCCeEEeCCcccccceEEEEeCC
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAA--QDCELVTAGELFGRSGYAIGLQKG 59 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~--~~~~l~~~~~~~~~~~~~ia~~kg 59 (90)
..+|.+.+|++|-||+.....+.... .+ .-+++..... ....+..+.+.+.
T Consensus 180 ~~~Evy~ALq~GvvDg~e~~~~~~~~-~~~~Ev~ky~~~~~-~~~~~~~~~~n~~ 232 (326)
T 3fxb_A 180 PWGEVYGGLQTNVIQGQENPTFFLYS-TKIYEVTDYITYAG-HNNFTTAVMANKD 232 (326)
T ss_dssp CGGGHHHHHHTTSCCEEEEEHHHHHH-TTGGGSCSEEEECC-CCEEEEEEEEEHH
T ss_pred CHHHHHHHHHcCCcceEecCHHHHHh-ccHhhhcceeEEcC-ccccceEEEEeHH
Confidence 35789999999999999987655321 11 1244333322 2233456777764
No 237
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=25.10 E-value=55 Score=17.91 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=19.3
Q ss_pred cCChHHHHHHhhcCCceEEEeeh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
+.+..+++..+...+.|+++.|.
T Consensus 44 ~~~~~~al~~~~~~~~dlvl~D~ 66 (143)
T 3m6m_D 44 VNGAEQVLDAMAEEDYDAVIVDL 66 (143)
T ss_dssp ESSHHHHHHHHHHSCCSEEEEES
T ss_pred eCCHHHHHHHHhcCCCCEEEEeC
Confidence 46778899999999999999874
No 238
>3o9p_A Periplasmic murein peptide-binding protein; oligopeptide binding proteins, murein tripeptide, periplasmi protein; HET: MHI; 2.07A {Escherichia coli} SCOP: c.94.1.0
Probab=24.94 E-value=35 Score=23.69 Aligned_cols=19 Identities=5% Similarity=-0.053 Sum_probs=16.6
Q ss_pred cCChHHHHHHhhcCCceEE
Q psy17442 5 VKFSPSTVVRHGTKKLMAF 23 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~ 23 (90)
+.+....+.+|++|++|.+
T Consensus 229 ~~d~~~~~~al~~GevD~~ 247 (519)
T 3o9p_A 229 INQESAATKRYLAGDIDIT 247 (519)
T ss_dssp CCCHHHHHHHHHHTSCSBC
T ss_pred cCCchHHHHHHHcCCCcee
Confidence 5677889999999999987
No 239
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=24.91 E-value=58 Score=17.21 Aligned_cols=25 Identities=12% Similarity=-0.074 Sum_probs=20.3
Q ss_pred ccCChHHHHHHhhcCCceEEEeehh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~ 28 (90)
.+.+..+++..+...+.|.++.|..
T Consensus 35 ~~~~~~~a~~~l~~~~~dlii~d~~ 59 (132)
T 3lte_A 35 IAHNGFDAGIKLSTFEPAIMTLDLS 59 (132)
T ss_dssp EESSHHHHHHHHHHTCCSEEEEESC
T ss_pred EeCCHHHHHHHHHhcCCCEEEEecC
Confidence 3567788999999999999998843
No 240
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=24.84 E-value=64 Score=17.32 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=20.0
Q ss_pred cCChHHHHHHhhcCCceEEEeeh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
+.+..+++..+...+.|+++.|.
T Consensus 34 ~~~~~~a~~~l~~~~~dlvi~d~ 56 (142)
T 2qxy_A 34 AKNEQEAFTFLRREKIDLVFVDV 56 (142)
T ss_dssp ESSHHHHHHHHTTSCCSEEEEEC
T ss_pred ECCHHHHHHHHhccCCCEEEEeC
Confidence 46778999999999999999885
No 241
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=24.32 E-value=23 Score=23.87 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=20.4
Q ss_pred cccCChHHHHHHhhcCCceEEEeeh
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
+.+++...|+..+++|++||++.-.
T Consensus 115 ~~~~sl~~A~~l~~~g~~~alVT~P 139 (349)
T 4aty_A 115 ATLAYVSAALRAARAGQVDAVIACP 139 (349)
T ss_dssp HHHHHHHHHHHHHHTTSCSEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCceEEecc
Confidence 3456678899999999999999753
No 242
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.21 E-value=62 Score=17.25 Aligned_cols=24 Identities=8% Similarity=-0.042 Sum_probs=20.2
Q ss_pred cCChHHHHHHhhcCCceEEEeehh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~ 28 (90)
+.+..+++..+...+.|+++.|..
T Consensus 33 ~~~~~~a~~~l~~~~~dlvi~d~~ 56 (140)
T 2qr3_A 33 LSSPVSLSTVLREENPEVVLLDMN 56 (140)
T ss_dssp ECCHHHHHHHHHHSCEEEEEEETT
T ss_pred eCCHHHHHHHHHcCCCCEEEEeCC
Confidence 567789999999999999998743
No 243
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=24.18 E-value=41 Score=17.85 Aligned_cols=27 Identities=11% Similarity=-0.074 Sum_probs=18.9
Q ss_pred CCChHHHHHHHHHhhhccHHHHHHHHhc
Q psy17442 60 SPWADAVTLAILDFHESTVCYLFMAKVH 87 (90)
Q Consensus 60 s~l~~~vn~~l~~l~~~G~~~~l~~kW~ 87 (90)
.|+++.+++.+..+..+.--++. +.|+
T Consensus 13 EPF~dfVdRl~kal~~e~~~~~v-k~~m 39 (77)
T 3g21_A 13 ESFVDFANRLIKAVEGSDLPPSA-RAPV 39 (77)
T ss_dssp CCHHHHHHHHHHHHHTSSSCHHH-HHHH
T ss_pred ccHHHHHHHHHHHHHHhhChHHH-HHHH
Confidence 57999999999988866443333 4554
No 244
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=24.05 E-value=59 Score=17.90 Aligned_cols=25 Identities=4% Similarity=-0.039 Sum_probs=20.9
Q ss_pred ccCChHHHHHHhhcCCceEEEeehh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~ 28 (90)
.+.+..+++..+...+.|+++.|..
T Consensus 43 ~~~~~~~a~~~l~~~~~dlvi~D~~ 67 (153)
T 3hv2_A 43 FARDATQALQLLASREVDLVISAAH 67 (153)
T ss_dssp EESSHHHHHHHHHHSCCSEEEEESC
T ss_pred EECCHHHHHHHHHcCCCCEEEEeCC
Confidence 3567889999999999999998843
No 245
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=23.81 E-value=70 Score=17.54 Aligned_cols=24 Identities=8% Similarity=-0.057 Sum_probs=20.2
Q ss_pred ccCChHHHHHHhhcCCceEEEeeh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
.+.+..+++..+.....|+++.|.
T Consensus 36 ~~~~~~~a~~~l~~~~~dlvi~d~ 59 (154)
T 2rjn_A 36 TFTSPLDALEALKGTSVQLVISDM 59 (154)
T ss_dssp EESCHHHHHHHHTTSCCSEEEEES
T ss_pred EeCCHHHHHHHHhcCCCCEEEEec
Confidence 356788999999999999999874
No 246
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=23.80 E-value=59 Score=17.67 Aligned_cols=25 Identities=4% Similarity=0.074 Sum_probs=20.4
Q ss_pred ccCChHHHHHHhhcC-CceEEEeehh
Q psy17442 4 DVKFSPSTVVRHGTK-KLMAFIWDSS 28 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G-~ida~i~d~~ 28 (90)
.+.+..+++..+... ..|+++.|..
T Consensus 44 ~~~~~~~al~~l~~~~~~dlvilD~~ 69 (145)
T 3kyj_B 44 QAANGQEALDKLAAQPNVDLILLDIE 69 (145)
T ss_dssp EESSHHHHHHHHHHCTTCCEEEECTT
T ss_pred EECCHHHHHHHHhcCCCCCEEEEeCC
Confidence 457888999999888 8999998853
No 247
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=23.63 E-value=1.7e+02 Score=19.71 Aligned_cols=65 Identities=8% Similarity=-0.091 Sum_probs=39.5
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCc-cc-------ccceEEEEeCCCCChHHHHHHHH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGEL-FG-------RSGYAIGLQKGSPWADAVTLAIL 71 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~-~~-------~~~~~ia~~kgs~l~~~vn~~l~ 71 (90)
+..++...+.+|++..++...-.+..+...+.++.++.-+ .. ..+.+++++++++-.+..-+.|.
T Consensus 211 ~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~s~~~e~A~~fi~ 283 (475)
T 3n94_A 211 DYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLE 283 (475)
T ss_dssp CHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHHHHHHHHH
T ss_pred ChhHHHHHHHcCCEEEEecCccccChhhhcCCceEEEeCCCCCCCCCCccccceEEEEECCCCCHHHHHHHHH
Confidence 4567888999999766665544444433334455554211 11 12356899999887776666665
No 248
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=23.47 E-value=1.9e+02 Score=20.03 Aligned_cols=65 Identities=6% Similarity=-0.159 Sum_probs=39.8
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcc--------cccceEEEEeCCCCChHHHHHHHH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELF--------GRSGYAIGLQKGSPWADAVTLAIL 71 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~--------~~~~~~ia~~kgs~l~~~vn~~l~ 71 (90)
+..++...+.+|++-.++...-.+..+...+.++.++.-+. ...+.+++++++++-.+..-+.|.
T Consensus 210 ~~~~~~~~f~~Gk~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~eaA~~Fi~ 282 (522)
T 3mp6_A 210 DYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLE 282 (522)
T ss_dssp CHHHHHHHHHTTSEEEEEECGGGHHHHHHSSCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHHHHHHHHH
T ss_pred ChHHHhhHHhcCCEeEEeccCcchhhhhhcCCceEEEECCCCCCCCCcccccceEEEEECCCCCHHHHHHHHH
Confidence 45678889999996666555444444433344555542111 112357899999887777766665
No 249
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=23.18 E-value=66 Score=17.24 Aligned_cols=25 Identities=8% Similarity=0.016 Sum_probs=20.2
Q ss_pred ccCChHHHHHHhhc-----CCceEEEeehh
Q psy17442 4 DVKFSPSTVVRHGT-----KKLMAFIWDSS 28 (90)
Q Consensus 4 ~~~~~~~~~~~l~~-----G~ida~i~d~~ 28 (90)
.+.+..+++..+.. ...|.++.|..
T Consensus 40 ~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~ 69 (146)
T 3ilh_A 40 SVTSGNAAINKLNELYAAGRWPSIICIDIN 69 (146)
T ss_dssp EESSHHHHHHHHHHHHTSSCCCSEEEEESS
T ss_pred ecCCHHHHHHHHHHhhccCCCCCEEEEcCC
Confidence 35678899999988 88999998843
No 250
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=23.17 E-value=1.9e+02 Score=19.87 Aligned_cols=65 Identities=8% Similarity=-0.112 Sum_probs=39.5
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCc-c-------cccceEEEEeCCCCChHHHHHHHH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGEL-F-------GRSGYAIGLQKGSPWADAVTLAIL 71 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~-~-------~~~~~~ia~~kgs~l~~~vn~~l~ 71 (90)
+..++...+.+|++..++...-.+..+.....++.++.-+ . ...+.+++++++++-.+..-+.|.
T Consensus 209 ~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fl~ 281 (581)
T 3o3u_N 209 DYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLE 281 (581)
T ss_dssp CHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHHHHHHHHH
T ss_pred ChhhHhhHHhcCCEEEEeccchhhchHhhcCCceEEEECCCCCCCCCcccccceEEEEECCCCCHHHHHHHHH
Confidence 4567888999999666665444443333334455544211 1 112357899999887777766665
No 251
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=23.05 E-value=80 Score=16.55 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=19.0
Q ss_pred cCChHHHHHHhhcC-CceEEEeeh
Q psy17442 5 VKFSPSTVVRHGTK-KLMAFIWDS 27 (90)
Q Consensus 5 ~~~~~~~~~~l~~G-~ida~i~d~ 27 (90)
+.+..+++..+... +.|+++.|.
T Consensus 35 ~~~~~~a~~~l~~~~~~dlvi~d~ 58 (132)
T 2rdm_A 35 VSSGAKAIEMLKSGAAIDGVVTDI 58 (132)
T ss_dssp ESSHHHHHHHHHTTCCCCEEEEES
T ss_pred ECCHHHHHHHHHcCCCCCEEEEee
Confidence 56778999999987 899999773
No 252
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Probab=23.00 E-value=1.9e+02 Score=20.02 Aligned_cols=65 Identities=8% Similarity=-0.112 Sum_probs=39.4
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCc-c-------cccceEEEEeCCCCChHHHHHHHH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGEL-F-------GRSGYAIGLQKGSPWADAVTLAIL 71 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~-~-------~~~~~~ia~~kgs~l~~~vn~~l~ 71 (90)
+..++...+.+|++-.++...-.+..+.....++.++.-+ . ...+.+++++++++-.+..-+.|.
T Consensus 211 ~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~s~~~eaA~~Fl~ 283 (539)
T 3h3g_A 211 DYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLE 283 (539)
T ss_dssp CHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHHHHHHHHH
T ss_pred ChhHHHHHHHCCCeeEEEecchhhhhHHHcCCcEEEEECCCCCCCCCcccccceEEEEECCCCCHHHHHHHHH
Confidence 4567788999999766665544444443334455544211 1 112356899999887776666665
No 253
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=22.68 E-value=80 Score=16.51 Aligned_cols=23 Identities=9% Similarity=-0.161 Sum_probs=19.0
Q ss_pred cCChHHHHHHhhcCCceEEEeeh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
+.+..+++..+...+.|.++.|.
T Consensus 37 ~~~~~~a~~~~~~~~~dlvl~D~ 59 (129)
T 1p6q_A 37 AGDGEQGMKIMAQNPHHLVISDF 59 (129)
T ss_dssp CSSHHHHHHHHHTSCCSEEEECS
T ss_pred cCCHHHHHHHHHcCCCCEEEEeC
Confidence 45778899999888899999874
No 254
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=22.61 E-value=81 Score=16.46 Aligned_cols=23 Identities=9% Similarity=-0.132 Sum_probs=19.2
Q ss_pred cCChHHHHHHhhcCCceEEEeeh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
+.+..+++..+..++.|.++.|.
T Consensus 35 ~~~~~~a~~~~~~~~~dlvi~D~ 57 (128)
T 1jbe_A 35 AEDGVDALNKLQAGGYGFVISDW 57 (128)
T ss_dssp ESSHHHHHHHHTTCCCCEEEEES
T ss_pred eCCHHHHHHHHHhcCCCEEEEeC
Confidence 46778899999988899999874
No 255
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=22.43 E-value=68 Score=17.10 Aligned_cols=24 Identities=13% Similarity=-0.235 Sum_probs=20.2
Q ss_pred cCChHHHHHHhhcCCceEEEeehh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~~ 28 (90)
+.+..+++..+...+.|.++.|..
T Consensus 40 ~~~~~~a~~~l~~~~~dlii~d~~ 63 (143)
T 3cnb_A 40 AYNPFDAGDLLHTVKPDVVMLDLM 63 (143)
T ss_dssp ECSHHHHHHHHHHTCCSEEEEETT
T ss_pred ECCHHHHHHHHHhcCCCEEEEecc
Confidence 567889999999999999998843
No 256
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=22.30 E-value=54 Score=17.69 Aligned_cols=16 Identities=13% Similarity=-0.033 Sum_probs=13.2
Q ss_pred HHHhhhccHHHHHHHH
Q psy17442 70 ILDFHESTVCYLFMAK 85 (90)
Q Consensus 70 l~~l~~~G~~~~l~~k 85 (90)
+.+|.++|++.++.++
T Consensus 90 l~~l~~~G~L~~~L~~ 105 (109)
T 3ipz_A 90 TLEAFKTGELQEEVEK 105 (109)
T ss_dssp HHHHHHHSHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHH
Confidence 6788899999988765
No 257
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=22.12 E-value=54 Score=18.13 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=18.5
Q ss_pred EeCC--CCChHHHHHHHHHhhhccHHH
Q psy17442 56 LQKG--SPWADAVTLAILDFHESTVCY 80 (90)
Q Consensus 56 ~~kg--s~l~~~vn~~l~~l~~~G~~~ 80 (90)
+++| .|+++.+++.+..++.+....
T Consensus 3 IkQGPkEPFrDyVdRf~kalraeqa~~ 29 (96)
T 1eoq_A 3 IMQGPSESFVDFANRLIKAVEGSDLPP 29 (96)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHTTTCCH
T ss_pred cccCCCCcHHHHHHHHHHHHHHhhccH
Confidence 3455 479999999999988855443
No 258
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=22.04 E-value=71 Score=18.35 Aligned_cols=23 Identities=9% Similarity=-0.224 Sum_probs=17.9
Q ss_pred CChHHHHHHhhcCCceEEEeehh
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~ 28 (90)
+.+...+..++.|++|.++....
T Consensus 50 p~l~~ll~~~~~g~id~vvv~~l 72 (143)
T 3ilx_A 50 KGFLKLLRMILNNEVSRVITAYP 72 (143)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSH
T ss_pred HHHHHHHHHHHhCCCCEEEEEeC
Confidence 44677888999999999886543
No 259
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=21.87 E-value=71 Score=17.94 Aligned_cols=22 Identities=5% Similarity=-0.117 Sum_probs=17.3
Q ss_pred CChHHHHHHhhcCCceEEEeeh
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~ 27 (90)
+.+...+..++.|++|.++...
T Consensus 58 p~l~~ll~~~~~g~~d~lvv~~ 79 (138)
T 3bvp_A 58 PAMQRLINDIENKAFDTVLVYK 79 (138)
T ss_dssp HHHHHHHHGGGGTSCSEEEESS
T ss_pred HHHHHHHHHHHhCCCCEEEEEe
Confidence 3456788899999999988654
No 260
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=21.85 E-value=30 Score=20.03 Aligned_cols=18 Identities=11% Similarity=-0.237 Sum_probs=15.2
Q ss_pred HHHHHHhhcCCceEEEee
Q psy17442 9 PSTVVRHGTKKLMAFIWD 26 (90)
Q Consensus 9 ~~~~~~l~~G~ida~i~d 26 (90)
++.+..+++|++|.+|.-
T Consensus 86 ~~i~d~i~~g~i~lVInt 103 (143)
T 2yvq_A 86 SSIRKLIRDGSIDLVINL 103 (143)
T ss_dssp BCHHHHHHTTSCCEEEEC
T ss_pred ccHHHHHHCCCceEEEEC
Confidence 557888999999999983
No 261
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=21.83 E-value=50 Score=17.79 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=20.2
Q ss_pred ccCChHHHHHHhhc-CCceEEEeeh
Q psy17442 4 DVKFSPSTVVRHGT-KKLMAFIWDS 27 (90)
Q Consensus 4 ~~~~~~~~~~~l~~-G~ida~i~d~ 27 (90)
.+.+..+++..+.+ .+.|.++.|.
T Consensus 34 ~~~~~~~a~~~l~~~~~~dlvi~D~ 58 (140)
T 3lua_A 34 EVENLKKFYSIFKDLDSITLIIMDI 58 (140)
T ss_dssp EECSHHHHHTTTTTCCCCSEEEECS
T ss_pred EECCHHHHHHHHhcCCCCcEEEEeC
Confidence 35678899999999 8999999884
No 262
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=21.68 E-value=1.3e+02 Score=17.52 Aligned_cols=65 Identities=9% Similarity=-0.079 Sum_probs=37.1
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEe--CCcccccceEEEEeCCCCChHHHHHHHHH
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTA--GELFGRSGYAIGLQKGSPWADAVTLAILD 72 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~--~~~~~~~~~~ia~~kgs~l~~~vn~~l~~ 72 (90)
+.+++...++..+.+|.--+++-.... . ....+..+ ........++++.+++.+....+...+..
T Consensus 158 ~~~~~~~~~~~~v~~g~Gi~~lp~~~~-~----~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~ 224 (238)
T 2hxr_A 158 IEANSISAVLELIRRTSLSTLLPAAIA-T----QHDGLKAISLAPPLLERTAVLLRRKNSWQTAAAKAFLHM 224 (238)
T ss_dssp EEESCHHHHHHHHHHSSCBEEEETHHH-H----HCTTEEEEEESSCSCEEEEEEEEETTSCCCHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHcCCcEEEecHHHh-c----cCCCeEEEecCCCCeeEEEEEEEeCCCccCHHHHHHHHH
Confidence 456778888888889886666654332 2 33345443 22222346778888876544444444433
No 263
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=21.64 E-value=68 Score=16.44 Aligned_cols=23 Identities=9% Similarity=-0.002 Sum_probs=19.0
Q ss_pred cCChHHHHHHhhcCCceEEEeeh
Q psy17442 5 VKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 5 ~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
+.+..+++..+...+.|.++.|.
T Consensus 31 ~~~~~~a~~~~~~~~~dlvl~D~ 53 (116)
T 3a10_A 31 AENGEEALKKFFSGNYDLVILDI 53 (116)
T ss_dssp ESSHHHHHHHHHHSCCSEEEECS
T ss_pred eCCHHHHHHHHhcCCCCEEEEEC
Confidence 46778899999988899999774
No 264
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=21.62 E-value=58 Score=17.04 Aligned_cols=18 Identities=0% Similarity=0.028 Sum_probs=15.3
Q ss_pred hHHHHHHHHHhhhccHHH
Q psy17442 63 ADAVTLAILDFHESTVCY 80 (90)
Q Consensus 63 ~~~vn~~l~~l~~~G~~~ 80 (90)
+..|++.|.+|+++|.+.
T Consensus 41 r~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 41 KKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHCCCEE
Confidence 367999999999999764
No 265
>2gib_A Nucleocapsid protein; dimer, viral protein; 1.75A {Sars coronavirus} SCOP: d.254.1.2
Probab=21.35 E-value=50 Score=18.51 Aligned_cols=22 Identities=23% Similarity=0.080 Sum_probs=14.8
Q ss_pred ccceEEEEeCCCC----ChHHHHHHH
Q psy17442 49 RSGYAIGLQKGSP----WADAVTLAI 70 (90)
Q Consensus 49 ~~~~~ia~~kgs~----l~~~vn~~l 70 (90)
...|.+-++|++| +.+.++..|
T Consensus 66 ty~y~i~vpk~dP~~~~~~~~l~~~v 91 (103)
T 2gib_A 66 TYHGAIKLDDKDPQFKDNVILLNKHI 91 (103)
T ss_dssp EEEEEEEECTTSTTHHHHHHHHHHHB
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHHhh
Confidence 4468899999998 444444433
No 266
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=21.30 E-value=1.3e+02 Score=17.47 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=40.7
Q ss_pred cccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCC--cccccceEEEEeCCCCChHHHHHHHHHhhh
Q psy17442 3 FDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGE--LFGRSGYAIGLQKGSPWADAVTLAILDFHE 75 (90)
Q Consensus 3 ~~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~--~~~~~~~~ia~~kgs~l~~~vn~~l~~l~~ 75 (90)
+.+++...++..+.+|.--+++-.... ... ....+..+.- ......++++.+++.++...+...+..+++
T Consensus 143 ~~~~~~~~~~~lv~~G~Gia~lp~~~~-~~~--~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~ 214 (228)
T 2fyi_A 143 LSAQDSDVIKTYVALGLGIGLVAEQSS-GEQ--EEENLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNA 214 (228)
T ss_dssp EEESSHHHHHHHHHHTSCEEEEEGGGG-STT--CCTTEEEECCTTTSCCEEEEEEEETTCCBCHHHHHHHHHHCS
T ss_pred EEeCCHHHHHHHHHhCCCEEEeehHhh-hhc--ccCCeEEEECCCcccceEEEEEEeCCCcCCHHHHHHHHHHHH
Confidence 346677778888888886566554322 111 1234555432 222345778888887766666666655543
No 267
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=21.27 E-value=72 Score=18.35 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=20.2
Q ss_pred ccCChHHHHHHhhcCCceEEEeeh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
.+.+..+++..+...+.|.++.|.
T Consensus 36 ~~~~~~~al~~~~~~~~dlvl~D~ 59 (184)
T 3rqi_A 36 QAHNKDEALKLAGAEKFEFITVXL 59 (184)
T ss_dssp EECSHHHHHHHHTTSCCSEEEECS
T ss_pred EeCCHHHHHHHHhhCCCCEEEEec
Confidence 356788999999999999999874
No 268
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A
Probab=21.17 E-value=1.8e+02 Score=18.96 Aligned_cols=70 Identities=10% Similarity=-0.136 Sum_probs=41.5
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhc--CCCeEEeCCcc----------cccceEEEEeCCCCChHHHHHHHHHhh
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQ--DCELVTAGELF----------GRSGYAIGLQKGSPWADAVTLAILDFH 74 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~--~~~l~~~~~~~----------~~~~~~ia~~kgs~l~~~vn~~l~~l~ 74 (90)
+..++...+.+|++-.++.........+.+ ..++.++.-+. .....+++++++++-.+..-+.|.-|.
T Consensus 244 ~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~I~~~s~~~e~A~~fl~~l~ 323 (415)
T 3oo8_A 244 TWQDAAKALENKQAGMMFQGSNQVAANYSAKNLPDLDFFVFPAINPQYGTDYMDAPTDGFILPKKGKNAAAAKKVLQYIG 323 (415)
T ss_dssp CHHHHHHHHHTTSEEEEEEEHHHHHHHSCTTTGGGEEEECCCBSSTTTTTCEEECCCEEEECBTTCSCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCeeEEEcccHhhhhcCCccccCCceEEeCCCCCCCCCCccccccCceEEEECCCCCHHHHHHHHHHHh
Confidence 457788999999965555443133322222 23344431111 112357899999988888888777765
Q ss_pred hc
Q psy17442 75 ES 76 (90)
Q Consensus 75 ~~ 76 (90)
..
T Consensus 324 s~ 325 (415)
T 3oo8_A 324 TA 325 (415)
T ss_dssp SH
T ss_pred CH
Confidence 53
No 269
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=21.07 E-value=52 Score=17.71 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=20.9
Q ss_pred ccCChHHHHHHhhcCCceEEEeehh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSS 28 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~ 28 (90)
.+.+..+++..+...+.|+++.|..
T Consensus 31 ~~~~~~~a~~~~~~~~~dlvi~D~~ 55 (140)
T 3n53_A 31 ESKNEKEALEQIDHHHPDLVILDMD 55 (140)
T ss_dssp EESSHHHHHHHHHHHCCSEEEEETT
T ss_pred EeCCHHHHHHHHhcCCCCEEEEeCC
Confidence 3567889999999999999999853
No 270
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=21.03 E-value=62 Score=16.98 Aligned_cols=17 Identities=0% Similarity=0.186 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhhhccHH
Q psy17442 63 ADAVTLAILDFHESTVC 79 (90)
Q Consensus 63 ~~~vn~~l~~l~~~G~~ 79 (90)
+..||+.|-.|.++|.+
T Consensus 43 K~~vNr~LY~L~kkG~V 59 (75)
T 1sfu_A 43 KKKINQQLYKLQKEDTV 59 (75)
T ss_dssp HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHCCCE
Confidence 37799999999999975
No 271
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=20.69 E-value=72 Score=18.51 Aligned_cols=21 Identities=0% Similarity=-0.211 Sum_probs=17.0
Q ss_pred CChHHHHHHhhcCCceEEEee
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWD 26 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d 26 (90)
+.+.+.+..++.|++|.++..
T Consensus 62 p~l~~ll~~~~~g~id~vvv~ 82 (169)
T 3g13_A 62 EDFQRMINDCMNGEIDMVFTK 82 (169)
T ss_dssp HHHHHHHHHHHTTCCSEEEES
T ss_pred HHHHHHHHHHHcCCCcEEEEE
Confidence 345788899999999998865
No 272
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=20.65 E-value=53 Score=22.03 Aligned_cols=23 Identities=9% Similarity=-0.126 Sum_probs=18.5
Q ss_pred ChHHHHHHhhcCCceEEEeehhH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSR 29 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~ 29 (90)
+..-|+..+++|++||++....+
T Consensus 81 s~~~A~~lv~~G~aDa~Vsag~t 103 (345)
T 1vi1_A 81 SMVLMAQEVAENRADACISAGNT 103 (345)
T ss_dssp HHHHHHHHHHTTSCSEEEECSCH
T ss_pred HHHHHHHHHHCCCCcEEEcCCcH
Confidence 34668999999999999995444
No 273
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4
Probab=20.60 E-value=48 Score=22.10 Aligned_cols=23 Identities=4% Similarity=-0.204 Sum_probs=18.5
Q ss_pred ChHHHHHHhhcCCceEEEeehhH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSR 29 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~ 29 (90)
+..-|+..+++|++||++....+
T Consensus 81 s~~~A~~lv~~G~ada~Vsag~t 103 (336)
T 1u7n_A 81 SMVLAAQAVKNGEADAIFSAGNT 103 (336)
T ss_dssp HHHHHHHHHHHTSCSEEEESSCH
T ss_pred HHHHHHHHHHCCCCcEEEeCCcH
Confidence 34678999999999999995444
No 274
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=20.58 E-value=1.5e+02 Score=17.89 Aligned_cols=32 Identities=9% Similarity=0.029 Sum_probs=22.6
Q ss_pred CChHHHHHHhhcCCceEEEeehhHHhHHHhcC
Q psy17442 6 KFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQD 37 (90)
Q Consensus 6 ~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~ 37 (90)
++..+++..++...+++++.+..+...+.+..
T Consensus 129 ~e~~~~i~~l~~~G~~vvVG~~~~~~~A~~~G 160 (196)
T 2q5c_A 129 DEITTLISKVKTENIKIVVSGKTVTDEAIKQG 160 (196)
T ss_dssp GGHHHHHHHHHHTTCCEEEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCeEEECCHHHHHHHHHcC
Confidence 45567788888777888888877766554434
No 275
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=20.47 E-value=76 Score=15.93 Aligned_cols=17 Identities=0% Similarity=0.032 Sum_probs=13.5
Q ss_pred HHHHhhhccHHHHHHHH
Q psy17442 69 AILDFHESTVCYLFMAK 85 (90)
Q Consensus 69 ~l~~l~~~G~~~~l~~k 85 (90)
.|.++.++|+++++.+.
T Consensus 71 ~i~~~~~~g~l~~~l~~ 87 (89)
T 2klx_A 71 DLYALENKGKLDSLLQD 87 (89)
T ss_dssp HHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHcCcHHHHHhh
Confidence 47788999999987653
No 276
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=20.40 E-value=85 Score=17.14 Aligned_cols=24 Identities=4% Similarity=-0.157 Sum_probs=20.3
Q ss_pred ccCChHHHHHHhhcCCceEEEeeh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
.+.+..+++..+.....|+++.|.
T Consensus 36 ~~~~~~~a~~~l~~~~~dlii~D~ 59 (153)
T 3cz5_A 36 EAADAGEAYRLYRETTPDIVVMDL 59 (153)
T ss_dssp EESSHHHHHHHHHTTCCSEEEECS
T ss_pred EeCCHHHHHHHHhcCCCCEEEEec
Confidence 456788999999999999999874
No 277
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.36 E-value=2.1e+02 Score=19.45 Aligned_cols=65 Identities=6% Similarity=-0.159 Sum_probs=39.2
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcc--------cccceEEEEeCCCCChHHHHHHHH
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELF--------GRSGYAIGLQKGSPWADAVTLAIL 71 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~--------~~~~~~ia~~kgs~l~~~vn~~l~ 71 (90)
+..++...+.+|++..++...-....+...+.++.++.-+. ...+.+++++++++-.+..-..|.
T Consensus 223 ~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~eaA~~Fi~ 295 (471)
T 3mq9_A 223 DYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLE 295 (471)
T ss_dssp CHHHHHHHHHTTCEEEEEECGGGHHHHHTTTCCEEEECCCBBTTBCCCCEEEEEEEEEBSSCSCHHHHHHHHH
T ss_pred ChHHHHHHHHcCCeEEEEecchhhHHHHhcCCCEEEEECCCCCCCCCcceecceEEEEECCCCCHHHHHHHHH
Confidence 45678889999996655554434433333344555442111 112357899999887777766665
No 278
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=20.32 E-value=51 Score=17.62 Aligned_cols=24 Identities=13% Similarity=-0.101 Sum_probs=20.1
Q ss_pred ccCChHHHHHHhhcCCceEEEeeh
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDS 27 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~ 27 (90)
.+.+..+++..+.....|.++.|.
T Consensus 36 ~~~~~~~a~~~l~~~~~dlvi~d~ 59 (137)
T 3hdg_A 36 SAGDGEEGERLFGLHAPDVIITDI 59 (137)
T ss_dssp EESSHHHHHHHHHHHCCSEEEECS
T ss_pred EECCHHHHHHHHhccCCCEEEEeC
Confidence 356788999999988999999884
No 279
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Probab=20.16 E-value=1.9e+02 Score=18.72 Aligned_cols=69 Identities=7% Similarity=-0.190 Sum_probs=39.0
Q ss_pred ChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcc---c------ccceEEEEeCCCCChHHHHHHH-HHhhh
Q psy17442 7 FSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELF---G------RSGYAIGLQKGSPWADAVTLAI-LDFHE 75 (90)
Q Consensus 7 ~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~---~------~~~~~ia~~kgs~l~~~vn~~l-~~l~~ 75 (90)
+..++...+.+|++..++...-....+.....++.++.-+. . ..+.+++++++++-.+..-+.| .-|..
T Consensus 210 ~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~~~i~~~s~~~e~A~~fi~~~l~s 288 (382)
T 2gha_A 210 NYQIMDSMFREGQAAMIINGPWAIKAYKDAGIDYGVAPIPDLEPGVPARPFVGVQGFMVNAKSPNKLLAIEFLTSFIAK 288 (382)
T ss_dssp CHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBSBTTBCCCCEEEEEEEEEBTTCTTHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHhCCCccEEEcCHHHHHHHHhcCCceEEEeCCCCCCCCCCcccccceEEEEeCCCCCHHHHHHHHHHHhcC
Confidence 44677888999996665554333333333334454442111 1 1234688999987666666666 44443
No 280
>4h1x_A PBP 2, phosphate-binding protein PSTS 2; periplasmic binding protein, PF12849 family; HET: MSE CIT; 1.77A {Streptococcus pneumoniae}
Probab=20.15 E-value=1.5e+02 Score=18.88 Aligned_cols=54 Identities=11% Similarity=-0.004 Sum_probs=37.0
Q ss_pred ccCChHHHHHHhhcCCceEEEeehhHHhHHHhcCCCeEEeCCcccccceEEEEeCCCCC
Q psy17442 4 DVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPW 62 (90)
Q Consensus 4 ~~~~~~~~~~~l~~G~ida~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~kgs~l 62 (90)
+-.....++.++..|.+|....+++.-..... .+.- ..+...+.++++.+++|.
T Consensus 189 ~~~GSg~G~~~~~~g~~di~~ssr~l~~~e~~---~~~~--~~va~d~iavvvn~~n~~ 242 (265)
T 4h1x_A 189 TSNGSSAGITAVKEKTADIGMVSRELTPEEGK---SLTH--DAIALDGIAVVVNNDNKA 242 (265)
T ss_dssp EESCHHHHHHHHHHTSCSEEEESSCCCHHHHT---TCEE--EEEEEEEEEEEECTTCCC
T ss_pred ecCCcHHHHHHHHcCCCceeeccccCChHHHc---CCeE--eeEEEEeEEEEECCCCCc
Confidence 34567889999999999999998876443222 1211 134566788899888763
Done!