RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17442
         (90 letters)



>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand
           binding core {Rat (Rattus norvegicus), GluR5 [TaxId:
           10116]}
          Length = 246

 Score = 50.2 bits (118), Expect = 2e-09
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 22  AFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHES 76
           A + +S+ +++   ++C L   G L    GY +G   GSP+ D +T+AIL   E 
Sbjct: 180 ALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEE 234


>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 289

 Score = 49.7 bits (117), Expect = 3e-09
 Identities = 36/65 (55%), Positives = 47/65 (72%)

Query: 12  VVRHGTKKLMAFIWDSSRLDFEAAQDCELVTAGELFGRSGYAIGLQKGSPWADAVTLAIL 71
           +      KL AFIWDS+ L+FEA+Q C+LVT GELF RSG+ IG++K SPW   V+L+IL
Sbjct: 207 IQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSIL 266

Query: 72  DFHES 76
             HE+
Sbjct: 267 KSHEN 271


>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat
           (Rattus norvegicus), GluR2 [TaxId: 10116]}
          Length = 260

 Score = 44.6 bits (104), Expect = 2e-07
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 22  AFIWDSSRLDFEAAQ-DCELVTAGELFGRSGYAIGLQKGSPWADAVTLAILDFHES 76
           A++ +S+  ++   +  C+ +  G      GY I   KGS   +AV LA+L  +E 
Sbjct: 187 AYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQ 242


>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor
           subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId:
           10116]}
          Length = 277

 Score = 42.3 bits (98), Expect = 1e-06
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 4/79 (5%)

Query: 2   RFDVKFSPSTVVRHGTKKLMAFIWDSSRLDFEAAQDCEL----VTAGELFGRSGYAIGLQ 57
           RF+ +     +V   T KL AFI+D++ L+++A +D       + +G +F  +GY I LQ
Sbjct: 183 RFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQ 242

Query: 58  KGSPWADAVTLAILDFHES 76
           KGSPW   + LA+L F   
Sbjct: 243 KGSPWKRQIDLALLQFVGD 261


>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA
           {Campylobacter jejuni [TaxId: 197]}
          Length = 248

 Score = 28.1 bits (61), Expect = 0.11
 Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 23  FIWDSSRLDFEAAQD-CELVTAGELFGRSGYAIGLQKGSP-WADAVTLAILDFHES 76
              D++ L           +   EL  +   A  ++KG     + +   I+   + 
Sbjct: 165 LSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQE 220


>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli
           [TaxId: 562]}
          Length = 223

 Score = 27.6 bits (60), Expect = 0.18
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 32  FEAAQDCELVTAGELFGRSGYAIGLQKGSP-WADAVTLAILDFHES 76
            + A + +    G+      Y I   KGS    D V  A+    E+
Sbjct: 162 IKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLREN 207


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 325,073
Number of extensions: 11550
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 7
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)