Query psy17453
Match_columns 140
No_of_seqs 102 out of 357
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 22:51:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362|consensus 100.0 1.6E-31 3.4E-36 231.3 11.8 131 1-139 440-572 (577)
2 PF04515 Choline_transpo: Plas 99.9 4E-26 8.7E-31 185.3 12.1 111 1-117 222-332 (334)
3 PRK13344 spxA transcriptional 60.1 5 0.00011 28.7 1.2 32 1-32 1-32 (132)
4 PRK01655 spxA transcriptional 59.3 5.4 0.00012 28.4 1.3 31 1-31 1-31 (131)
5 cd03036 ArsC_like Arsenate Red 56.6 5.5 0.00012 27.4 0.9 30 2-31 1-30 (111)
6 PRK12559 transcriptional regul 51.9 7.5 0.00016 27.8 1.0 31 1-31 1-31 (131)
7 PRK10853 putative reductase; P 48.4 11 0.00024 26.4 1.4 32 1-32 1-32 (118)
8 TIGR02327 int_mem_ywzB conserv 47.8 39 0.00084 21.7 3.7 28 75-102 36-63 (68)
9 cd03032 ArsC_Spx Arsenate Redu 47.4 10 0.00022 26.1 1.1 32 1-32 1-32 (115)
10 cd03418 GRX_GRXb_1_3_like Glut 46.4 10 0.00022 23.3 0.9 31 2-32 2-32 (75)
11 COG3732 SrlE Phosphotransferas 46.2 37 0.00079 27.9 4.2 20 9-28 171-190 (328)
12 cd02977 ArsC_family Arsenate R 44.7 11 0.00023 25.4 0.9 30 2-31 1-30 (105)
13 PRK13150 cytochrome c-type bio 44.6 19 0.00042 26.9 2.3 21 119-139 131-151 (159)
14 cd03027 GRX_DEP Glutaredoxin ( 44.6 11 0.00024 23.4 0.9 31 2-32 3-33 (73)
15 TIGR00825 EIIBC-GUT PTS system 44.5 76 0.0017 26.3 5.8 21 8-28 173-193 (331)
16 PF14946 DUF4501: Domain of un 43.2 18 0.00039 27.4 1.9 25 36-60 91-117 (180)
17 PF06703 SPC25: Microsomal sig 42.8 96 0.0021 22.6 5.8 24 78-101 57-80 (162)
18 KOG2611|consensus 42.5 24 0.00051 31.5 2.8 41 96-136 78-118 (698)
19 TIGR02181 GRX_bact Glutaredoxi 41.8 12 0.00027 23.4 0.7 30 2-31 1-30 (79)
20 PRK11200 grxA glutaredoxin 1; 41.2 13 0.00029 23.8 0.9 30 2-31 3-37 (85)
21 TIGR02189 GlrX-like_plant Glut 38.5 16 0.00035 24.6 0.9 28 2-29 10-37 (99)
22 TIGR01617 arsC_related transcr 37.9 16 0.00034 25.2 0.9 31 2-32 1-31 (117)
23 PRK10638 glutaredoxin 3; Provi 36.9 18 0.0004 23.1 1.0 30 2-31 4-33 (83)
24 cd02066 GRX_family Glutaredoxi 36.3 17 0.00037 21.4 0.8 31 2-32 2-32 (72)
25 TIGR02200 GlrX_actino Glutared 35.6 20 0.00044 21.8 1.0 31 1-31 1-31 (77)
26 PF13074 DUF3938: Protein of u 35.3 26 0.00056 23.3 1.5 22 72-93 65-86 (102)
27 COG1393 ArsC Arsenate reductas 34.3 21 0.00046 25.1 1.1 31 1-31 2-32 (117)
28 PRK10026 arsenate reductase; P 33.9 21 0.00046 26.0 1.0 30 2-31 4-33 (141)
29 COG3057 SeqA Negative regulato 33.1 50 0.0011 24.7 2.9 34 106-139 104-138 (181)
30 cd03035 ArsC_Yffb Arsenate Red 32.5 21 0.00045 24.4 0.8 30 2-31 1-30 (105)
31 PRK11056 hypothetical protein; 31.6 1.2E+02 0.0026 21.7 4.5 19 72-90 90-108 (120)
32 TIGR02058 lin0512_fam conserve 31.2 45 0.00098 23.7 2.3 24 4-31 13-36 (116)
33 PF07226 DUF1422: Protein of u 30.5 1E+02 0.0023 21.9 4.0 19 72-90 90-108 (117)
34 cd03029 GRX_hybridPRX5 Glutare 30.3 28 0.0006 21.4 1.0 30 2-31 3-32 (72)
35 cd03033 ArsC_15kD Arsenate Red 29.9 29 0.00063 24.1 1.1 31 2-32 2-32 (113)
36 PF02790 COX2_TM: Cytochrome C 29.3 1.5E+02 0.0033 18.6 5.4 60 28-87 18-79 (84)
37 PF10870 DUF2729: Protein of u 29.0 25 0.00054 21.3 0.6 18 104-121 20-37 (53)
38 KOG1965|consensus 28.8 3.9E+02 0.0084 24.2 8.1 29 32-60 231-260 (575)
39 TIGR02196 GlrX_YruB Glutaredox 27.1 33 0.00071 20.3 0.9 28 1-28 1-28 (74)
40 PRK06758 hypothetical protein; 26.9 41 0.00089 23.3 1.4 21 72-92 89-109 (128)
41 PRK08456 flagellar motor prote 26.6 3.3E+02 0.0071 21.6 7.8 66 72-137 178-251 (257)
42 KOG2927|consensus 26.4 1.4E+02 0.0031 25.3 4.7 22 38-59 191-212 (372)
43 TIGR02194 GlrX_NrdH Glutaredox 26.0 33 0.00071 21.2 0.8 29 3-31 2-30 (72)
44 TIGR02190 GlrX-dom Glutaredoxi 24.7 41 0.00089 21.2 1.1 30 2-31 10-39 (79)
45 TIGR00014 arsC arsenate reduct 24.3 36 0.00078 23.5 0.8 29 3-31 2-30 (114)
46 PRK12585 putative monovalent c 24.2 3.4E+02 0.0075 21.0 7.0 19 29-47 4-22 (197)
47 COG2332 CcmE Cytochrome c-type 23.7 62 0.0013 24.1 1.9 22 117-138 123-144 (153)
48 PRK10478 putative PTS system f 23.4 3.7E+02 0.0081 22.7 6.8 46 39-87 103-151 (359)
49 KOG4511|consensus 23.3 62 0.0014 26.6 2.0 22 95-116 55-76 (335)
50 PF06612 DUF1146: Protein of u 22.8 77 0.0017 18.8 1.9 20 75-94 29-48 (48)
51 KOG4050|consensus 22.7 3.5E+02 0.0076 20.6 7.2 60 38-102 77-136 (188)
52 PF09585 Lin0512_fam: Conserve 22.6 67 0.0014 22.7 1.9 21 3-27 12-32 (113)
53 TIGR01616 nitro_assoc nitrogen 22.4 48 0.001 23.5 1.1 31 2-32 3-33 (126)
54 KOG1725|consensus 22.3 2E+02 0.0044 22.1 4.6 24 97-120 115-138 (186)
55 PF00837 T4_deiodinase: Iodoth 22.2 65 0.0014 25.7 1.9 15 121-135 223-237 (237)
56 PF14163 SieB: Superinfection 22.1 3E+02 0.0066 19.6 5.8 32 72-103 31-62 (151)
57 PF03823 Neurokinin_B: Neuroki 21.3 2.2E+02 0.0047 17.7 4.6 42 80-133 6-56 (59)
58 TIGR03097 PEP_O_lig_1 probable 21.2 4.4E+02 0.0094 22.0 6.9 63 25-96 322-386 (402)
59 PF09425 CCT_2: Divergent CCT 21.0 73 0.0016 16.8 1.4 12 125-136 6-17 (27)
60 cd03034 ArsC_ArsC Arsenate Red 20.7 47 0.001 22.7 0.8 29 3-31 2-30 (112)
61 PF07297 DPM2: Dolichol phosph 20.4 2.7E+02 0.0058 18.4 5.8 18 39-56 5-22 (78)
62 PHA03231 glycoprotein BALF4; P 20.3 2.2E+02 0.0048 26.9 5.1 18 81-98 710-727 (829)
63 PHA02898 virion envelope prote 20.1 2.9E+02 0.0064 18.7 5.7 53 37-98 14-69 (92)
No 1
>KOG1362|consensus
Probab=99.97 E-value=1.6e-31 Score=231.31 Aligned_cols=131 Identities=46% Similarity=0.747 Sum_probs=120.9
Q ss_pred CeeecCCchhHHHHHHHHHHHHchhhhHhhhhHHHHHHHHHHHHHHHHHHhhHHHHhccccccccCCCccccccchHHHH
Q psy17453 1 MCAIHGGNFCKSAKDAFSLLIRNAVRTVVVDKVADLLLFLGKVLLTAGVSAGAYYIFFRPVIDFDTKKSFILEYPWFPVA 80 (140)
Q Consensus 1 ~iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~~v~~~vl~lgkl~v~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~p~~ 80 (140)
|||||||+||+|||+||+|+.||..|++.+|.++++++|+||+++++.+++.++.++..+ ++ .++++++|++
T Consensus 440 ~iAiyGk~Fc~SAkda~~ll~~Nv~~vv~~d~vs~~llflgk~l~~~~~g~~g~~~l~~~-------~~-~l~~y~V~ll 511 (577)
T KOG1362|consen 440 MIAIYGKNFCTSAKDAWELLRRNVLRVVDVDLVSDFLLFLGKLLGAIGSGVAGIWLLIGR-------KD-VLYYYVVPLL 511 (577)
T ss_pred eeeccCccchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC-------CC-cceeEeHHHH
Confidence 689999999999999999999999999999999999999999999999999999988764 33 1488999988
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhhhcCCCc--ccccHHHHHHHhhhcccCC
Q psy17453 81 ILGVATFLISSTFFRVYSMAIDTLFLCFLEDCERNDGSQE--YFMSKRLMKLLTKRKVVDH 139 (140)
Q Consensus 81 i~~~~s~~ia~~F~~v~~~aidTiflCf~~D~e~n~g~~~--~~~~~~L~~~l~~~~~~~~ 139 (140)
..++.+|+|+++|+++++|++||+|+|||||+|+|||+++ ++|++.|++.+++.++.++
T Consensus 512 a~iig~ylIa~~f~~v~~m~VdtlflCf~eD~e~n~gs~~~p~~~~~~l~~~~~~~~~~~~ 572 (577)
T KOG1362|consen 512 AFIIGAYLIAHIFFSVLEMCVDTLFLCFAEDPESNDGSPEKPQFMSEQLLEILGRSNKAPR 572 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheeEecHhhcCCCCCcceeeeHHHHHhcccccccch
Confidence 8888889999999999999999999999999999999955 7999999999999987654
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=99.94 E-value=4e-26 Score=185.33 Aligned_cols=111 Identities=41% Similarity=0.692 Sum_probs=103.3
Q ss_pred CeeecCCchhHHHHHHHHHHHHchhhhHhhhhHHHHHHHHHHHHHHHHHHhhHHHHhccccccccCCCccccccchHHHH
Q psy17453 1 MCAIHGGNFCKSAKDAFSLLIRNAVRTVVVDKVADLLLFLGKVLLTAGVSAGAYYIFFRPVIDFDTKKSFILEYPWFPVA 80 (140)
Q Consensus 1 ~iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~~v~~~vl~lgkl~v~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~p~~ 80 (140)
++||||++||+|||++++|+.||+.+...++++++.++++||+++++++++++|+++....+ . ++ ++++.+|.+
T Consensus 222 ~~ai~G~~F~~sak~~~~L~~~n~~~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~---~-~~--~~~~~~~~~ 295 (334)
T PF04515_consen 222 YIAIYGKSFCESAKRAFELIKRNGLRAIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSF---K-ND--LSYPIVPAL 295 (334)
T ss_pred HHHhcCCchHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---C-cc--ccchHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999986321 1 45 899999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhhhcC
Q psy17453 81 ILGVATFLISSTFFRVYSMAIDTLFLCFLEDCERNDG 117 (140)
Q Consensus 81 i~~~~s~~ia~~F~~v~~~aidTiflCf~~D~e~n~g 117 (140)
++++++|.++++|+++|++++||+++||+||||+++.
T Consensus 296 ~~~~i~~~i~~~f~~v~~~~vdti~vc~~~d~e~~~~ 332 (334)
T PF04515_consen 296 ISFFIGYFISSIFMSVYSSAVDTIFVCYAEDPEMNKN 332 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999999999999999999999988764
No 3
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=60.09 E-value=5 Score=28.74 Aligned_cols=32 Identities=22% Similarity=0.120 Sum_probs=28.0
Q ss_pred CeeecCCchhHHHHHHHHHHHHchhhhHhhhh
Q psy17453 1 MCAIHGGNFCKSAKDAFSLLIRNAVRTVVVDK 32 (140)
Q Consensus 1 ~iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~~ 32 (140)
|+-|||.+-|.++++|...+.+|...+..++-
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~ 32 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNL 32 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 57799999999999999999999988766653
No 4
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=59.30 E-value=5.4 Score=28.44 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=27.5
Q ss_pred CeeecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 1 MCAIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 1 ~iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
|+-|||.+-|..+++|..++.+|...+..++
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~id 31 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERN 31 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEee
Confidence 5779999999999999999999998876665
No 5
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=56.61 E-value=5.5 Score=27.41 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=26.0
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
+-|||.+-|.++++|..++.+|...+..++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~id 30 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAID 30 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEec
Confidence 458999999999999999999998876655
No 6
>PRK12559 transcriptional regulator Spx; Provisional
Probab=51.94 E-value=7.5 Score=27.79 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=27.2
Q ss_pred CeeecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 1 MCAIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 1 ~iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
|+-|||.+-|.++++|...+.+|...+..++
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~d 31 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKN 31 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEE
Confidence 5779999999999999999999998876655
No 7
>PRK10853 putative reductase; Provisional
Probab=48.44 E-value=11 Score=26.41 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=28.1
Q ss_pred CeeecCCchhHHHHHHHHHHHHchhhhHhhhh
Q psy17453 1 MCAIHGGNFCKSAKDAFSLLIRNAVRTVVVDK 32 (140)
Q Consensus 1 ~iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~~ 32 (140)
|+-|||.+=|.+.|+|...+..|...+..++-
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~ 32 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDY 32 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeeh
Confidence 46799999999999999999999988877663
No 8
>TIGR02327 int_mem_ywzB conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; Pfam model pfam06612 describes the same family as Protein of unknown function DUF1146.
Probab=47.77 E-value=39 Score=21.70 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy17453 75 PWFPVAILGVATFLISSTFFRVYSMAID 102 (140)
Q Consensus 75 ~~~p~~i~~~~s~~ia~~F~~v~~~aid 102 (140)
.+.-++++..+||.+|+.|.+.++.+-.
T Consensus 36 ~ll~vllaIalGylvs~FfL~~i~~s~~ 63 (68)
T TIGR02327 36 RVLVVLIAIALGYTVSHFFLELIQLSQS 63 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778899999999999999877643
No 9
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=47.43 E-value=10 Score=26.14 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=27.4
Q ss_pred CeeecCCchhHHHHHHHHHHHHchhhhHhhhh
Q psy17453 1 MCAIHGGNFCKSAKDAFSLLIRNAVRTVVVDK 32 (140)
Q Consensus 1 ~iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~~ 32 (140)
|+-|||.+=|..+++|...+.++...+..++-
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi 32 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNL 32 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 46799999999999999999999887766653
No 10
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=46.37 E-value=10 Score=23.31 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=25.5
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVDK 32 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~~ 32 (140)
|-|++++.|+.+++|-.++.++...+..++.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i 32 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDV 32 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEEC
Confidence 5689999999999999999998877765543
No 11
>COG3732 SrlE Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]
Probab=46.22 E-value=37 Score=27.86 Aligned_cols=20 Identities=15% Similarity=0.469 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHchhhhH
Q psy17453 9 FCKSAKDAFSLLIRNAVRTV 28 (140)
Q Consensus 9 Fc~sAk~a~~Li~~N~~~~~ 28 (140)
|++|+|++.+...||.+-++
T Consensus 171 ffqagR~tid~vlknilPFM 190 (328)
T COG3732 171 FFQAGRDTIDTVLKNILPFM 190 (328)
T ss_pred hhhhchhHHHHHHHHhHHHH
Confidence 89999999999999988875
No 12
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=44.72 E-value=11 Score=25.37 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=25.8
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
+-|||.+-|..+++|..++.+|...+..++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~id 30 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFID 30 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEe
Confidence 458999999999999999999988776555
No 13
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=44.59 E-value=19 Score=26.92 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=16.7
Q ss_pred CcccccHHHHHHHhhhcccCC
Q psy17453 119 QEYFMSKRLMKLLTKRKVVDH 139 (140)
Q Consensus 119 ~~~~~~~~L~~~l~~~~~~~~ 139 (140)
++.|||||+.+-+++...-||
T Consensus 131 dekYmPpEv~~al~~~~~~~~ 151 (159)
T PRK13150 131 DENYTPPEVEKAMQENHRRPQ 151 (159)
T ss_pred CCCCCCHHHHHHHHHhCCCCc
Confidence 346999999999987777665
No 14
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=44.57 E-value=11 Score=23.35 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=25.8
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVDK 32 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~~ 32 (140)
+-+++.+-|+.+++|-.++.++......++-
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di 33 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPYVEINI 33 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCceEEEEC
Confidence 5689999999999999999999887765543
No 15
>TIGR00825 EIIBC-GUT PTS system, glucitol/sorbitol-specific, IIBC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIBC component.
Probab=44.52 E-value=76 Score=26.32 Aligned_cols=21 Identities=10% Similarity=0.341 Sum_probs=18.7
Q ss_pred chhHHHHHHHHHHHHchhhhH
Q psy17453 8 NFCKSAKDAFSLLIRNAVRTV 28 (140)
Q Consensus 8 ~Fc~sAk~a~~Li~~N~~~~~ 28 (140)
-|.+|+|++.+.+.+|.+-++
T Consensus 173 ~f~QagRdtidtvlktIlPFM 193 (331)
T TIGR00825 173 TLFQSGRDTIDTVLKTILPFM 193 (331)
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 489999999999999988875
No 16
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=43.18 E-value=18 Score=27.36 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=19.5
Q ss_pred HHHHHHHHHHH--HHHHhhHHHHhccc
Q psy17453 36 LLLFLGKVLLT--AGVSAGAYYIFFRP 60 (140)
Q Consensus 36 ~vl~lgkl~v~--~~~~~~~~~~l~~~ 60 (140)
.-||||.+||+ ++-++.+|++|+..
T Consensus 91 ASL~LgTffIS~~LilSvA~FFYLKrs 117 (180)
T PF14946_consen 91 ASLFLGTFFISLGLILSVASFFYLKRS 117 (180)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeeccc
Confidence 34889999998 55667889999853
No 17
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=42.76 E-value=96 Score=22.57 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q psy17453 78 PVAILGVATFLISSTFFRVYSMAI 101 (140)
Q Consensus 78 p~~i~~~~s~~ia~~F~~v~~~ai 101 (140)
|.+++++++|++.+..+.++.+-+
T Consensus 57 ~~~~~~v~~YfiLs~il~~~~~~~ 80 (162)
T PF06703_consen 57 PYLIICVILYFILSGILTLYSYFV 80 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788889999988777776643
No 18
>KOG2611|consensus
Probab=42.52 E-value=24 Score=31.50 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCCCcccccHHHHHHHhhhcc
Q psy17453 96 VYSMAIDTLFLCFLEDCERNDGSQEYFMSKRLMKLLTKRKV 136 (140)
Q Consensus 96 v~~~aidTiflCf~~D~e~n~g~~~~~~~~~L~~~l~~~~~ 136 (140)
||-...-|++-|||.|+|+-.-.+--..-|-|.+++.+..+
T Consensus 78 Vy~~i~itvLacFC~~pElAsh~~~v~~IP~llev~~~~~d 118 (698)
T KOG2611|consen 78 VYLQISITVLACFCRVPELASHEEMVSRIPLLLEVMSKGID 118 (698)
T ss_pred HHHHHHHHHHHHHhCChhhccCHHHHHhhhHHHHHHHhcCC
Confidence 44445557999999999986532112234677788766544
No 19
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=41.76 E-value=12 Score=23.41 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=24.4
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
|.|++++.|+.+++|-.++.++......++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~d 30 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIR 30 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEE
Confidence 468899999999999999998887765544
No 20
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=41.16 E-value=13 Score=23.80 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=22.9
Q ss_pred eeecCCchhHHHHHHHHHHHH-----chhhhHhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIR-----NAVRTVVVD 31 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~-----N~~~~~~v~ 31 (140)
+-|++++.|+.+++|..++.+ +......+|
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~id 37 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVD 37 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEE
Confidence 568899999999999999888 655544433
No 21
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=38.50 E-value=16 Score=24.59 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=22.9
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVV 29 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~ 29 (140)
+-|++++.|+-+++|-.++.++......
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~~~ 37 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNPAV 37 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 5688999999999999999888776544
No 22
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=37.91 E-value=16 Score=25.21 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=26.4
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVDK 32 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~~ 32 (140)
+-|||.+-|..+++|...+.+|...+..++-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi 31 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDI 31 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEec
Confidence 3589999999999999999999988776653
No 23
>PRK10638 glutaredoxin 3; Provisional
Probab=36.91 E-value=18 Score=23.06 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=25.4
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
|-||+++.|+-++++-.++.++......++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~d 33 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSFQEIP 33 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEE
Confidence 678999999999999999999988776554
No 24
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=36.27 E-value=17 Score=21.37 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=24.8
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVDK 32 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~~ 32 (140)
+-+++++.|..++++..++.++..++..++.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di 32 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDI 32 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEEC
Confidence 5688999999999999999999876654443
No 25
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=35.60 E-value=20 Score=21.77 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=24.5
Q ss_pred CeeecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 1 MCAIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 1 ~iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
++-++|.+.|..++++-..+.++......++
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~id 31 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVD 31 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEe
Confidence 4678999999999999998888876654433
No 26
>PF13074 DUF3938: Protein of unknown function (DUF3938)
Probab=35.32 E-value=26 Score=23.33 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=10.1
Q ss_pred cccchHHHHHHHHHHHHHHhhh
Q psy17453 72 LEYPWFPVAILGVATFLISSTF 93 (140)
Q Consensus 72 l~~~~~p~~i~~~~s~~ia~~F 93 (140)
+++..+-.+-..+++|..|.+|
T Consensus 65 lssaffhglwtwfiafcladvf 86 (102)
T PF13074_consen 65 LSSAFFHGLWTWFIAFCLADVF 86 (102)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 4444444444455555555443
No 27
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=34.34 E-value=21 Score=25.08 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=27.3
Q ss_pred CeeecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 1 MCAIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 1 ~iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
+|-|||.+=|.++|+|...+.+|+.....++
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~ 32 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFID 32 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEE
Confidence 4789999999999999999999998886554
No 28
>PRK10026 arsenate reductase; Provisional
Probab=33.91 E-value=21 Score=26.03 Aligned_cols=30 Identities=7% Similarity=0.332 Sum_probs=27.2
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
+-|||.+=|.+.|+|..++.+|...+...+
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d 33 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNSGTEPTIIH 33 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCcEEEe
Confidence 568999999999999999999998887766
No 29
>COG3057 SeqA Negative regulator of replication initiationR [DNA replication, recombination, and repair]
Probab=33.09 E-value=50 Score=24.74 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=26.2
Q ss_pred HHhhhhhhhhcCCCc-ccccHHHHHHHhhhcccCC
Q psy17453 106 LCFLEDCERNDGSQE-YFMSKRLMKLLTKRKVVDH 139 (140)
Q Consensus 106 lCf~~D~e~n~g~~~-~~~~~~L~~~l~~~~~~~~ 139 (140)
..|.+-.|-.+|+.+ ||+..+---..+..+.|||
T Consensus 104 ~sFaeATesl~GRtRVYFA~deqTLL~~Gn~TKPK 138 (181)
T COG3057 104 QAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPK 138 (181)
T ss_pred HHHHHHHHhhcCceeEEEecchHHHHHcCCCCCCC
Confidence 578888888888878 9988876666666666766
No 30
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=32.49 E-value=21 Score=24.39 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=25.7
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
|-|||.+=|.++|+|...+.+|...+..++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~d 30 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHD 30 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEe
Confidence 358999999999999999999987776655
No 31
>PRK11056 hypothetical protein; Provisional
Probab=31.65 E-value=1.2e+02 Score=21.72 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=9.5
Q ss_pred cccchHHHHHHHHHHHHHH
Q psy17453 72 LEYPWFPVAILGVATFLIS 90 (140)
Q Consensus 72 l~~~~~p~~i~~~~s~~ia 90 (140)
+.+..+|.+++.++.++|+
T Consensus 90 iGSNF~p~il~~~L~~Wi~ 108 (120)
T PRK11056 90 IGSNFFPAVLSVILVFWIG 108 (120)
T ss_pred cccchHHHHHHHHHHHHHH
Confidence 5555555555555544443
No 32
>TIGR02058 lin0512_fam conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.
Probab=31.20 E-value=45 Score=23.72 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=18.4
Q ss_pred ecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 4 IHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 4 i~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
+||+++-+||++| .||+++-..+.
T Consensus 13 lhGqD~TkAA~RA----vrDAI~hnsip 36 (116)
T TIGR02058 13 QHGQNITKAAMRA----VRNAIASNSMP 36 (116)
T ss_pred ccCccHHHHHHHH----HHHHHhhccch
Confidence 6999999999999 56666654433
No 33
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=30.47 E-value=1e+02 Score=21.89 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=9.3
Q ss_pred cccchHHHHHHHHHHHHHH
Q psy17453 72 LEYPWFPVAILGVATFLIS 90 (140)
Q Consensus 72 l~~~~~p~~i~~~~s~~ia 90 (140)
+.+..+|.+++.++.++|+
T Consensus 90 iGSNFfp~il~l~L~~Wi~ 108 (117)
T PF07226_consen 90 IGSNFFPSILCLILVFWIG 108 (117)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 4455555555544444443
No 34
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=30.30 E-value=28 Score=21.39 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=21.8
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
+-|++++.|+-+++|-+++.+.......++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~ 32 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENGISYEEIP 32 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 567788888888888888888776664443
No 35
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=29.91 E-value=29 Score=24.10 Aligned_cols=31 Identities=16% Similarity=0.034 Sum_probs=27.0
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVDK 32 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~~ 32 (140)
+-|||.+=|.++|+|...+.+|...+..++-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~ 32 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDL 32 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeeh
Confidence 4589999999999999999999988776663
No 36
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=29.31 E-value=1.5e+02 Score=18.62 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=31.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhHHHHhcccccc-ccCC-CccccccchHHHHHHHHHHH
Q psy17453 28 VVVDKVADLLLFLGKVLLTAGVSAGAYYIFFRPVID-FDTK-KSFILEYPWFPVAILGVATF 87 (140)
Q Consensus 28 ~~v~~v~~~vl~lgkl~v~~~~~~~~~~~l~~~~~~-~~~~-~~~~l~~~~~p~~i~~~~s~ 87 (140)
.-++.+-+.++.+.-.....+.+++.+...+.+.++ .+.+ +.=++-.-++|.++..++++
T Consensus 18 ~~~~~l~~~~~~i~~~I~~~V~~~l~~~~~~~~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~ 79 (84)
T PF02790_consen 18 EEMDWLHDFVMIIMIFIFVFVFYFLIYFLFNSKFPNKFFNHNNKLEIIWTIIPAIILLFLAF 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS--S---SHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhheeeeEeeecccccccccccccccccchhhhhhhhHHHHHHHHHHHh
Confidence 345566667777666666666667777777622221 1111 11002223478888777764
No 37
>PF10870 DUF2729: Protein of unknown function (DUF2729); InterPro: IPR022621 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf72; it is a family of uncharacterised viral proteins. This Alphabaculovirus family of proteins has no known function.
Probab=28.96 E-value=25 Score=21.31 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=13.5
Q ss_pred HHHHhhhhhhhhcCCCcc
Q psy17453 104 LFLCFLEDCERNDGSQEY 121 (140)
Q Consensus 104 iflCf~~D~e~n~g~~~~ 121 (140)
-++|.|..+|-.||.++|
T Consensus 20 ~LlCkCv~~~d~d~gdrY 37 (53)
T PF10870_consen 20 ALLCKCVAPEDSDGGDRY 37 (53)
T ss_pred HHhhhhcCCccCCCCceE
Confidence 356999988888766664
No 38
>KOG1965|consensus
Probab=28.79 E-value=3.9e+02 Score=24.21 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=21.1
Q ss_pred hHHHHH-HHHHHHHHHHHHHhhHHHHhccc
Q psy17453 32 KVADLL-LFLGKVLLTAGVSAGAYYIFFRP 60 (140)
Q Consensus 32 ~v~~~v-l~lgkl~v~~~~~~~~~~~l~~~ 60 (140)
.++.++ +|.|.+.+++.+|++.-+++++.
T Consensus 231 ~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~ 260 (575)
T KOG1965|consen 231 AIGNFLYTFFGSLGLGVAIGLISALVLKFL 260 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 78888888888888887777763
No 39
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=27.09 E-value=33 Score=20.25 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=19.5
Q ss_pred CeeecCCchhHHHHHHHHHHHHchhhhH
Q psy17453 1 MCAIHGGNFCKSAKDAFSLLIRNAVRTV 28 (140)
Q Consensus 1 ~iAi~G~~Fc~sAk~a~~Li~~N~~~~~ 28 (140)
++-+++.+.|..++++...+.++...+.
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~ 28 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFE 28 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEE
Confidence 4678888888888887776666544443
No 40
>PRK06758 hypothetical protein; Provisional
Probab=26.90 E-value=41 Score=23.33 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=9.3
Q ss_pred cccchHHHHHHHHHHHHHHhh
Q psy17453 72 LEYPWFPVAILGVATFLISST 92 (140)
Q Consensus 72 l~~~~~p~~i~~~~s~~ia~~ 92 (140)
+++..+-.+-..+++|..|.+
T Consensus 89 lssaffhglwtwfiafcladv 109 (128)
T PRK06758 89 LSSAFFHGLWTWFIAFCLADV 109 (128)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 344333344444555554443
No 41
>PRK08456 flagellar motor protein MotA; Validated
Probab=26.57 E-value=3.3e+02 Score=21.61 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------Hhhhhh-hhhcCCCcccccHHHHHHHhhhccc
Q psy17453 72 LEYPWFPVAILGVATFLISSTFFRVYSMAIDTLFL-------CFLEDC-ERNDGSQEYFMSKRLMKLLTKRKVV 137 (140)
Q Consensus 72 l~~~~~p~~i~~~~s~~ia~~F~~v~~~aidTifl-------Cf~~D~-e~n~g~~~~~~~~~L~~~l~~~~~~ 137 (140)
+...+.-.++.-+.+.++|..++..+..-++..-. +..+=- ...+|.++....+.|..|+...+++
T Consensus 178 lg~gIa~ALvtT~yGl~vAn~~~~Pia~kl~~~~~~e~~~~~~i~egi~~i~~g~~P~~i~~~L~~~l~~~~~~ 251 (257)
T PRK08456 178 MAAGIAGAFTATVTGIMGSYALFGPWGHKLKAKSKDIIKEKTVILEGILGIAEGANPRDLEEKLLNYLSPGEPK 251 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhCCchhhh
Confidence 55555556677777778888888776655543321 111111 1223543345566677777654443
No 42
>KOG2927|consensus
Probab=26.41 E-value=1.4e+02 Score=25.34 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhHHHHhcc
Q psy17453 38 LFLGKVLLTAGVSAGAYYIFFR 59 (140)
Q Consensus 38 l~lgkl~v~~~~~~~~~~~l~~ 59 (140)
..||-+++.++-++..|-+.-.
T Consensus 191 ~vl~~~fvl~tlaivLFPLWP~ 212 (372)
T KOG2927|consen 191 QVLGVLFVLVTLAIVLFPLWPR 212 (372)
T ss_pred HHHHHHHHHHHHHHHhcccCcH
Confidence 4455555555555555544333
No 43
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=25.97 E-value=33 Score=21.20 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=23.0
Q ss_pred eecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 3 AIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 3 Ai~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
-||+++-|..+++|-.++.++...+..++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~~i~~~~~d 30 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEHGIAFEEIN 30 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCceEEEE
Confidence 47888888888888888888887765544
No 44
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=24.74 E-value=41 Score=21.24 Aligned_cols=30 Identities=10% Similarity=0.013 Sum_probs=22.9
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
|-|++++.|.-++++-.++.+.......++
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~~~gi~y~~id 39 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLKEKGYDFEEIP 39 (79)
T ss_pred EEEEECCCCHhHHHHHHHHHHcCCCcEEEE
Confidence 567888888888888888888877766544
No 45
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=24.26 E-value=36 Score=23.46 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=25.5
Q ss_pred eecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 3 AIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 3 Ai~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
-+||.+=|.++|+|...+.+|...+...|
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~~i~~~~~d 30 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDKGIEPEVVK 30 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 48999999999999999999988876655
No 46
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=24.18 E-value=3.4e+02 Score=21.04 Aligned_cols=19 Identities=11% Similarity=0.530 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q psy17453 29 VVDKVADLLLFLGKVLLTA 47 (140)
Q Consensus 29 ~v~~v~~~vl~lgkl~v~~ 47 (140)
+++.++.+++.+|.++..+
T Consensus 4 i~eiI~~vLLliG~~f~li 22 (197)
T PRK12585 4 IIEIIISIMILIGGLLSIL 22 (197)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567788888888877654
No 47
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=23.68 E-value=62 Score=24.11 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=15.8
Q ss_pred CCCcccccHHHHHHHhhhcccC
Q psy17453 117 GSQEYFMSKRLMKLLTKRKVVD 138 (140)
Q Consensus 117 g~~~~~~~~~L~~~l~~~~~~~ 138 (140)
..++.|+||++.+-+++...-+
T Consensus 123 KHdEnY~P~ev~~~mk~~~~~~ 144 (153)
T COG2332 123 KHDENYTPPEVAKAMKKNGVWL 144 (153)
T ss_pred cCCcccCCHHHHHHhhhcCCcc
Confidence 3445699999999887765543
No 48
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=23.42 E-value=3.7e+02 Score=22.70 Aligned_cols=46 Identities=13% Similarity=0.064 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhHHHHhcc-ccccccCC--CccccccchHHHHHHHHHHH
Q psy17453 39 FLGKVLLTAGVSAGAYYIFFR-PVIDFDTK--KSFILEYPWFPVAILGVATF 87 (140)
Q Consensus 39 ~lgkl~v~~~~~~~~~~~l~~-~~~~~~~~--~~~~l~~~~~p~~i~~~~s~ 87 (140)
|+|.++.+.+.+.+.. ++++ +.|..+.+ |- +-.|++-++++.++-+
T Consensus 103 FlGaii~G~laGy~v~-~lkki~lpk~l~~~~pi--liiP~l~~li~g~lm~ 151 (359)
T PRK10478 103 FFGALIAGIIGGIVVH-YLKKIPVHKVLRSVMPI--FIIPIVGTLITAGIMM 151 (359)
T ss_pred hHHHHHHHHHHHHHHH-HHHhcCCchhhHhhcce--eeeHHHHHHHHHHHHH
Confidence 6788888888776665 4444 34432221 22 3444554555555554
No 49
>KOG4511|consensus
Probab=23.33 E-value=62 Score=26.62 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhc
Q psy17453 95 RVYSMAIDTLFLCFLEDCERND 116 (140)
Q Consensus 95 ~v~~~aidTiflCf~~D~e~n~ 116 (140)
-=|..-|||++=|||+|-.++.
T Consensus 55 ~EYk~LVd~lle~f~eevgi~p 76 (335)
T KOG4511|consen 55 KEYKQLVDTLLECFCEEVGITP 76 (335)
T ss_pred HHHHHHHHHHHHHHHHHhCCCH
Confidence 3578899999999999987653
No 50
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=22.84 E-value=77 Score=18.80 Aligned_cols=20 Identities=25% Similarity=0.291 Sum_probs=15.3
Q ss_pred chHHHHHHHHHHHHHHhhhH
Q psy17453 75 PWFPVAILGVATFLISSTFF 94 (140)
Q Consensus 75 ~~~p~~i~~~~s~~ia~~F~ 94 (140)
.+.-++++..++|.+|+.|.
T Consensus 29 ~ll~vllsIalGylvs~FfL 48 (48)
T PF06612_consen 29 RLLIVLLSIALGYLVSSFFL 48 (48)
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 45556778889999998873
No 51
>KOG4050|consensus
Probab=22.71 E-value=3.5e+02 Score=20.59 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhHHHHhccccccccCCCccccccchHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy17453 38 LFLGKVLLTAGVSAGAYYIFFRPVIDFDTKKSFILEYPWFPVAILGVATFLISSTFFRVYSMAID 102 (140)
Q Consensus 38 l~lgkl~v~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~p~~i~~~~s~~ia~~F~~v~~~aid 102 (140)
+++|-+.+++..+.+.|....... ...-. -.+|+.-+..+...+|+.-++|-+|.-.+..
T Consensus 77 iilglivvvlvi~~liwa~~~~a~---~krmr--~~hp~~~l~gvllv~yfli~v~~~vlv~~F~ 136 (188)
T KOG4050|consen 77 IILGLIVVVLVIGTLIWAASADAN---IKRMR--TDHPLVTLAGVLLVGYFLISVFGGVLVFAFA 136 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHH---HHHHh--hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888887776666665544321 11112 4578888888888889888888876554433
No 52
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=22.64 E-value=67 Score=22.74 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=16.2
Q ss_pred eecCCchhHHHHHHHHHHHHchhhh
Q psy17453 3 AIHGGNFCKSAKDAFSLLIRNAVRT 27 (140)
Q Consensus 3 Ai~G~~Fc~sAk~a~~Li~~N~~~~ 27 (140)
-+||+++-+||++| .||+++-
T Consensus 12 DlhGqD~TkAA~RA----v~DAI~~ 32 (113)
T PF09585_consen 12 DLHGQDYTKAAVRA----VRDAISH 32 (113)
T ss_pred cccCCcHHHHHHHH----HHHHHhh
Confidence 36999999999999 4555544
No 53
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=22.36 E-value=48 Score=23.54 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=26.9
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVDK 32 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~~ 32 (140)
+-|||.+=|.+.|+|...+.+|...+...+-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~ 33 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKASGHDVEVQDI 33 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCcEEEec
Confidence 4589999999999999999999988776663
No 54
>KOG1725|consensus
Probab=22.27 E-value=2e+02 Score=22.08 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhhhhhhhcCCCc
Q psy17453 97 YSMAIDTLFLCFLEDCERNDGSQE 120 (140)
Q Consensus 97 ~~~aidTiflCf~~D~e~n~g~~~ 120 (140)
+---+.++|+|++.+|+.|+....
T Consensus 115 ~y~~~K~~fl~~l~lP~~~Ga~~i 138 (186)
T KOG1725|consen 115 FYWYAKLIFLLWLVLPQFNGAAII 138 (186)
T ss_pred HHHHHHHHHHHHHhccCCCCceee
Confidence 446678999999999977775443
No 55
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=22.22 E-value=65 Score=25.70 Aligned_cols=15 Identities=27% Similarity=0.291 Sum_probs=13.3
Q ss_pred ccccHHHHHHHhhhc
Q psy17453 121 YFMSKRLMKLLTKRK 135 (140)
Q Consensus 121 ~~~~~~L~~~l~~~~ 135 (140)
.|.|+|++++|+|.+
T Consensus 223 ~y~~~e~r~~L~~~~ 237 (237)
T PF00837_consen 223 GYSPEELREWLEKYK 237 (237)
T ss_pred cCCHHHHHHHHHhcC
Confidence 799999999999863
No 56
>PF14163 SieB: Superinfection exclusion protein B
Probab=22.10 E-value=3e+02 Score=19.63 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=26.0
Q ss_pred cccchHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy17453 72 LEYPWFPVAILGVATFLISSTFFRVYSMAIDT 103 (140)
Q Consensus 72 l~~~~~p~~i~~~~s~~ia~~F~~v~~~aidT 103 (140)
.+.+++..++.+-+||+++.++...+.-+.+-
T Consensus 31 ~y~~~i~~~fl~s~s~li~~~~~~~~~~~~~~ 62 (151)
T PF14163_consen 31 KYQPWIGLIFLFSVSYLIAQLLSFIYKEAKDR 62 (151)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688888899999999999998887765543
No 57
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=21.32 E-value=2.2e+02 Score=17.72 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhhh----cCCC----c-ccccHHHHHHHhh
Q psy17453 80 AILGVATFLISSTFFRVYSMAIDTLFLCFLEDCERN----DGSQ----E-YFMSKRLMKLLTK 133 (140)
Q Consensus 80 ~i~~~~s~~ia~~F~~v~~~aidTiflCf~~D~e~n----~g~~----~-~~~~~~L~~~l~~ 133 (140)
+++++++..++. -|-..||+..-. .|.. . |..||+|.+-+-+
T Consensus 6 Lf~aiLalsla~------------s~gavCeesQeQ~~p~gg~skKdsdLyqLPpslLRRLyd 56 (59)
T PF03823_consen 6 LFAAILALSLAR------------SFGAVCEESQEQVVPGGGHSKKDSDLYQLPPSLLRRLYD 56 (59)
T ss_pred HHHHHHHHHHHH------------HhhhhhhhhhhccCCCCCccccCcchhhCCHHHHHHHHh
Confidence 455555555554 455667765433 1211 1 7889998766544
No 58
>TIGR03097 PEP_O_lig_1 probable O-glycosylation ligase, exosortase system type 1-associated. These proteins are members of the O-antigen polymerase (wzy) family described by Pfam model pfam04932. This group is associated with genomes and ususally genomic contexts containing elements of the exosortase/PEP-CTERM protein export system, specificially the type 1 variety of this system described by the Genome Property, GenProp0652.
Probab=21.20 E-value=4.4e+02 Score=21.98 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=36.8
Q ss_pred hhhHhhhhHHHHHHHHHHHHHHHHHHhhHHHHhccccccccCCCccccc--cchHHHHHHHHHHHHHHhhhHHH
Q psy17453 25 VRTVVVDKVADLLLFLGKVLLTAGVSAGAYYIFFRPVIDFDTKKSFILE--YPWFPVAILGVATFLISSTFFRV 96 (140)
Q Consensus 25 ~~~~~v~~v~~~vl~lgkl~v~~~~~~~~~~~l~~~~~~~~~~~~~~l~--~~~~p~~i~~~~s~~ia~~F~~v 96 (140)
.++..-.++.+++++++-++.....+.-.....+.+ ++ .. ....-.+.+..++|.+++.|++.
T Consensus 322 le~l~e~GivGl~l~l~l~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~l~g~~v~~~fl~~ 386 (402)
T TIGR03097 322 FQVLGEHGFVGLALFLGLLALTLLRAGWLKRHARGI-------PE--LKWAVDLAAMLQVSLVGYAVGGAFLGL 386 (402)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------cc--hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666677777777766666554432222111111 22 22 22344577889999999999884
No 59
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=20.98 E-value=73 Score=16.81 Aligned_cols=12 Identities=42% Similarity=0.534 Sum_probs=8.8
Q ss_pred HHHHHHHhhhcc
Q psy17453 125 KRLMKLLTKRKV 136 (140)
Q Consensus 125 ~~L~~~l~~~~~ 136 (140)
.+|++|++|.++
T Consensus 6 ~SLqRFLeKRK~ 17 (27)
T PF09425_consen 6 ASLQRFLEKRKD 17 (27)
T ss_dssp HHHHHHHHHH--
T ss_pred HHHHHHHHHHHH
Confidence 689999998765
No 60
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=20.70 E-value=47 Score=22.74 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=25.4
Q ss_pred eecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 3 AIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 3 Ai~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
-|||.+=|.++|+|...+..|...+...|
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~~i~~~~~d 30 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEAGIEPEIVE 30 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 48999999999999999999988876665
No 61
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=20.39 E-value=2.7e+02 Score=18.35 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhHHHH
Q psy17453 39 FLGKVLLTAGVSAGAYYI 56 (140)
Q Consensus 39 ~lgkl~v~~~~~~~~~~~ 56 (140)
.+|+.+....+.++.|+-
T Consensus 5 ~vG~~~l~~a~~vF~YYt 22 (78)
T PF07297_consen 5 LVGLLMLAVALSVFTYYT 22 (78)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357777777777777653
No 62
>PHA03231 glycoprotein BALF4; Provisional
Probab=20.33 E-value=2.2e+02 Score=26.90 Aligned_cols=18 Identities=17% Similarity=-0.062 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhhHHHHH
Q psy17453 81 ILGVATFLISSTFFRVYS 98 (140)
Q Consensus 81 i~~~~s~~ia~~F~~v~~ 98 (140)
+.++++.+++-++..-+.
T Consensus 710 illvia~vv~v~l~~rr~ 727 (829)
T PHA03231 710 GLLVIAVLVAVFLAYRRV 727 (829)
T ss_pred HHHHHHHhhhhhHHHHHH
Confidence 344444455544444433
No 63
>PHA02898 virion envelope protein; Provisional
Probab=20.14 E-value=2.9e+02 Score=18.74 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHhccccccccCCCccccccch-HHHHHHHHHHH--HHHhhhHHHHH
Q psy17453 37 LLFLGKVLLTAGVSAGAYYIFFRPVIDFDTKKSFILEYPW-FPVAILGVATF--LISSTFFRVYS 98 (140)
Q Consensus 37 vl~lgkl~v~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~p~~i~~~~s~--~ia~~F~~v~~ 98 (140)
++..|-++..+.| +++|+=+..+.+ ++ .+.| ...+++|+++. .++-++++.|+
T Consensus 14 vli~GIiLL~~AC-IfAfidfSK~~~-----~~---~~~wRalSii~FIlgivl~lG~~ifs~y~ 69 (92)
T PHA02898 14 VVAFGIILLIVAC-ICAYIELSKSEK-----PA---DSALRSISIISFILAIILILGIIFFKGYN 69 (92)
T ss_pred HHHHHHHHHHHHH-HHheehhhcCCC-----cc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555443 666655443221 21 2334 44455666553 33444444443
Done!